CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017540	Mannheimia haemolytica strain 1451, complete genome	4 crisprs	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,PD-DExK,RT	5	15	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017540_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017540_1

914208-914282

Orphan

Consensus_repeat	Method
CCTAGCGGTGGCAGGCACCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017540_1

>merge|NZ_CP017540|1|914208-914282|CRISPRCasFinder
CCTAGCGGTGGCAGGCACCAGAAAGACCTGATACTAATCTAGGGTATAAAGACCTAGCGGTGGCAGACACCAGAA

>NZ_CP017540|1|1|914208-914282|CRISPRCasFinder
CCTAGCGGTGGCAGGCACCAGAA	AGACCTGATACTAATCTAGGGTATAAAGA
CCTAGCGGTGGCAGACACCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017540.1\|WP_015586954.1\|914494_915535_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017540.1\|WP_006248919.1\|924742_925156_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248313.1\|911590_912184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248309.1\|909682_910432_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP017540.1\|WP_006248925.1\|919800_920565_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP017540.1\|WP_006253291.1\|919041_919758_+\|DUF3800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378919
NZ_CP017540.1\|WP_006248924.1\|920720_922706_-\|DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377859
NZ_CP017540.1\|WP_006248308.1\|909195_909681_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NZ_CP017540.1\|WP_006248316.1\|912849_914091_+\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP017540.1\|WP_006248921.1\|923510_924494_-\|DUF1738-domain-containing-protein	unknown	unknown	gnl\|CDD\|226680
NZ_CP017540.1\|WP_006248311.1\|910603_911467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006251360.1\|906572_907466_+\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP017540.1\|WP_147008894.1\|923178_923421_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248303.1\|906098_906560_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP017540.1\|WP_015484309.1\|915711_917403_-\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|236872
NZ_CP017540.1\|WP_006248305.1\|907549_908494_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP017540.1\|WP_006248918.1\|925270_926113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006253290.1\|917614_918712_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017540.1\|WP_006250513.1\|912646_912850_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP017540.1\|WP_006248307.1\|908586_909132_+\|endonuclease-SmrB	unknown	unknown	gnl\|CDD\|235321

Protein	Function_ID	Function_description	E-value
NZ_CP017540.1\|WP_015586954.1\|914494_915535_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.80308e-24
NZ_CP017540.1\|WP_006248309.1\|909682_910432_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.14593e-11
NZ_CP017540.1\|WP_006248925.1\|919800_920565_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.76772e-29
NZ_CP017540.1\|WP_006253291.1\|919041_919758_+\|DUF3800-domain-containing-protein	gnl\|CDD\|378919	pfam12686, DUF3800, Protein of unknown function (DUF3800). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 215 and 302 amino acids in length. There is a DE motif at the N-terminus and a QXXD motif at the C-terminus that may be functionally important.	4.6451e-06
NZ_CP017540.1\|WP_006248924.1\|920720_922706_-\|DNA-binding-domain-containing-protein	gnl\|CDD\|377859	pfam07514, TraI_2, Putative helicase. Some members of this family have been annotated as helicases.	1.09264e-162
NZ_CP017540.1\|WP_006248308.1\|909195_909681_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.45719e-68
NZ_CP017540.1\|WP_006248316.1\|912849_914091_+\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	8.01844e-62
NZ_CP017540.1\|WP_006248921.1\|923510_924494_-\|DUF1738-domain-containing-protein	gnl\|CDD\|226680	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair].	2.23887e-80
NZ_CP017540.1\|WP_006251360.1\|906572_907466_+\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	0
NZ_CP017540.1\|WP_006248303.1\|906098_906560_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	4.22169e-09
NZ_CP017540.1\|WP_006248305.1\|907549_908494_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP017540.1\|WP_015484309.1\|915711_917403_-\|D-lactate-dehydrogenase	gnl\|CDD\|236872	PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.	0
NZ_CP017540.1\|WP_006253290.1\|917614_918712_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.31404e-24
NZ_CP017540.1\|WP_006250513.1\|912646_912850_+\|hypothetical-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	0.00480946
NZ_CP017540.1\|WP_006248307.1\|908586_909132_+\|endonuclease-SmrB	gnl\|CDD\|235321	PRK04946, PRK04946, endonuclease SmrB.	3.04874e-103

>NZ_CP017540.1|WP_006248316.1|912849_914091_+|HipA-domain-containing-protein
MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWLSSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKPKLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLESSDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEYLAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYEASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPAYDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQNVAKEIGIPRQEQEQMKFAFNV
>NZ_CP017540.1|WP_006250513.1|912646_912850_+|hypothetical-protein
MFTQTLLAQRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLRK
>NZ_CP017540.1|WP_006248313.1|911590_912184_+|hypothetical-protein
MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDLVFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGYQADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQKEGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI
>NZ_CP017540.1|WP_006248311.1|910603_911467_+|hypothetical-protein
MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTFLLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLSLFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWVGYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGVLNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIAIVAIICLFYWR
>NZ_CP017540.1|WP_006248309.1|909682_910432_-|alpha/beta-fold-hydrolase
MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLKSNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKNLYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREILWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVIELLPIEGADHAFSNPKLMDIAIGKIVEFFAP
>NZ_CP017540.1|WP_006248308.1|909195_909681_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQGAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVFGAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAKS
>NZ_CP017540.1|WP_006248307.1|908586_909132_+|endonuclease-SmrB
MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELRELKEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTREKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWGGDASILILVEQPENPEKMFGR
>NZ_CP017540.1|WP_006248305.1|907549_908494_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGHGYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLTNSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAERFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPYVDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVHLIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA
>NZ_CP017540.1|WP_006251360.1|906572_907466_+|N-acetylmuramic-acid-6-phosphate-etherase
MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQCLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAGGERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGATTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIGKCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNLDKQKAEDLLSQNQGRLQKALK
>NZ_CP017540.1|WP_006248303.1|906098_906560_+|nuclear-transport-factor-2-family-protein
MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILDLNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLSTDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV
>NZ_CP017540.1|WP_015586954.1|914494_915535_-|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSKELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017540.1|WP_015484309.1|915711_917403_-|D-lactate-dehydrogenase
MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVVKPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQLINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGHDHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIGTNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQLFSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGGKGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDIVALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQMLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK
>NZ_CP017540.1|WP_006253290.1|917614_918712_-|IS481-family-transposase
MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFVSAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQIQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAKLYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHRTHQGKMCCGRTPMETLVDGKRIWAEKNLSSN
>NZ_CP017540.1|WP_006253291.1|919041_919758_+|DUF3800-domain-containing-protein
MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIASQFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAVIEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALARTFKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNFDYHNGRIHGLYLRNKEDIIS
>NZ_CP017540.1|WP_006248925.1|919800_920565_-|site-specific-integrase
MLIEWRNQIVGDKIKAVTWNNYVRHLKALYNFGISQGLLNINRNPFNQLFIRESKRRKKTYSTEQLHKIDHILNNNVVLPDFLKPSWFVLAIIMTLRCTGIRRGQLVKLKISDVDLSNRTIYISPEINKNHDYHIVPISDSLYIHIERLITELKIRKQTDNCQLFNLNLFSRCSRRRGQPMSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVQKLLGHKDISVTLGYIEHDVEMLRETVNLL
>NZ_CP017540.1|WP_006248924.1|920720_922706_-|DNA-binding-domain-containing-protein
MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQLLNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLDHGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHLHPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVTLALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKTAADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANTFTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQTGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISIGKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVKWLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDFQGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHCLTLQKEET
>NZ_CP017540.1|WP_147008894.1|923178_923421_-|hypothetical-protein
MLNLNLFKRPIEISTLESWSKFCDDVGKVAFVAVPAMLYSNYEFWIKISSIVGLFIATYFCLVIGRNIRQFIEKEKSKWD
>NZ_CP017540.1|WP_006248921.1|923510_924494_-|DUF1738-domain-containing-protein
MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGGMPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSYRPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQLTDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVLLHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNASYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA
>NZ_CP017540.1|WP_006248919.1|924742_925156_-|hypothetical-protein
MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYTIWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFYEGIARILLEQGMITETEAAEKSYNFRAANCFQRLL
>NZ_CP017540.1|WP_006248918.1|925270_926113_-|hypothetical-protein
MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQIIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQLCYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA

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Crispr_ID: NZ_CP017540_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017540_2

1125850-1125928

Orphan

Consensus_repeat	Method
CCTTAAATATCCTAGATTAGTTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017540_2

>merge|NZ_CP017540|2|1125850-1125928|CRISPRCasFinder
CCTTAAATATCCTAGATTAGTTTCAAGTTTTTCTGATGCTTGCCATCTGCTAGACCTTAAATATCCTAGATTAGTTTCA

>NZ_CP017540|2|2|1125850-1125928|CRISPRCasFinder
CCTTAAATATCCTAGATTAGTTTCA	AGTTTTTCTGATGCTTGCCATCTGCTAGA
CCTTAAATATCCTAGATTAGTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017540.1\|WP_006248324.1\|1124677_1124908_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_032845458.1\|1116644_1117637_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|181888
NZ_CP017540.1\|WP_006248321.1\|1129303_1129942_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|182863
NZ_CP017540.1\|WP_006248319.1\|1130361_1131456_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|237727
NZ_CP017540.1\|WP_015484370.1\|1128443_1129220_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP017540.1\|WP_006252261.1\|1127884_1128178_-\|YfcZ/YiiS-family-protein	unknown	unknown	gnl\|CDD\|367851
NZ_CP017540.1\|WP_006248322.1\|1125175_1125730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
NZ_CP017540.1\|WP_006248320.1\|1130005_1130275_-\|DUF1040-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP017540.1\|WP_015587024.1\|1126047_1126779_-\|transposase	unknown	unknown	gnl\|CDD\|374806
NZ_CP017540.1\|WP_006248329.1\|1123484_1123742_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248336.1\|1117654_1118086_-\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP017540.1\|WP_006248318.1\|1131510_1135707_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP017540.1\|WP_006248333.1\|1121465_1121897_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248334.1\|1119359_1121462_+\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274768
NZ_CP017540.1\|WP_006248332.1\|1121961_1123050_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP017540.1\|WP_006253298.1\|1119054_1119333_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274769
NZ_CP017540.1\|WP_006252258.1\|1135855_1136629_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|223748
NZ_CP017540.1\|WP_006248326.1\|1124239_1124557_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP017540.1\|WP_041447934.1\|1126777_1127818_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017540.1\|WP_015484369.1\|1128179_1128434_-\|luciferase	unknown	unknown	gnl\|CDD\|274646

Protein	Function_ID	Function_description	E-value
NZ_CP017540.1\|WP_032845458.1\|1116644_1117637_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|181888	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional.	0
NZ_CP017540.1\|WP_006248321.1\|1129303_1129942_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	7.23879e-76
NZ_CP017540.1\|WP_015484370.1\|1128443_1129220_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.54784e-136
NZ_CP017540.1\|WP_006252261.1\|1127884_1128178_-\|YfcZ/YiiS-family-protein	gnl\|CDD\|367851	pfam04175, DUF406, Protein of unknown function (DUF406). Members of this family appear to be found only in gamma proteobacteria. The function of this protein family is undetermined. Solution of the structures of the two members of this family investigated bear some resemblance to that of the single domain enzyme pterin-4a-carbinolamine dehydratase, PDC. Although the residues of PCDs involved in binding of metabolite are not conserved in the two structures under study, they do correspond to a surface-region structurally aligned with residues that are highly conserved, eg Glu 89, suggesting that this region is also involved in binding of a ligand, thereby possibly constituting a catalytic site of a yet uncharacterized enzyme specific for gamma proteobacteria.	7.66966e-31
NZ_CP017540.1\|WP_006248322.1\|1125175_1125730_-\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	3.16015e-14
NZ_CP017540.1\|WP_006248320.1\|1130005_1130275_-\|DUF1040-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	8.73032e-44
NZ_CP017540.1\|WP_015587024.1\|1126047_1126779_-\|transposase	gnl\|CDD\|374806	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid. RepB_primase is a DNA-primase produced by P4-like phages. It is a zinc-independent primase unlike Pri-type primases. It takes up a dumbbell shaped consisting of an N-terminal catalytic domain separated by a long alpha-helix plus tether and a C-terminal helical-bundle domain. Primases are necessary for phage replication. RepBprime primases such as in this family recognize both ssiA and ssiB, ie only 1 single-stranded primase initiation site on each strand, independently of each other and then synthesize primers that are elongated by DNA polymerase III. The phage is thus replicated exclusively in leading strand mode.	1.03593e-07
NZ_CP017540.1\|WP_006248336.1\|1117654_1118086_-\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.5487e-72
NZ_CP017540.1\|WP_006248318.1\|1131510_1135707_-\|autotransporter-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	0
NZ_CP017540.1\|WP_006248319.1\|1130361_1131456_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|237727	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional.	0
NZ_CP017540.1\|WP_006248334.1\|1119359_1121462_+\|integrating-conjugative-element-protein	gnl\|CDD\|274768	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	5.90252e-139
NZ_CP017540.1\|WP_006248332.1\|1121961_1123050_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	8.96153e-28
NZ_CP017540.1\|WP_041447934.1\|1126777_1127818_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.24151e-24
NZ_CP017540.1\|WP_006252258.1\|1135855_1136629_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|223748	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism].	2.73894e-101
NZ_CP017540.1\|WP_006248326.1\|1124239_1124557_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	6.83223e-07
NZ_CP017540.1\|WP_006253298.1\|1119054_1119333_+\|hypothetical-protein	gnl\|CDD\|274769	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	3.08918e-11
NZ_CP017540.1\|WP_015484369.1\|1128179_1128434_-\|luciferase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	3.54605e-12

>NZ_CP017540.1|WP_006248322.1|1125175_1125730_-|hypothetical-protein
MRKQAKLEKYIHLIEDAAKFFNSYFINKKVIYRTKTQEISIIFKRSNFMHLCGIKYTDGASEFFNAAISNNLDLAKMNVKSDGTTFLKLSLLNSVSFLLTPEMCLTEGGIYLNIRFDKSLKTKKQIFALTLINQNHVFIPNSLLNLKKMNDFPNGERVVSIKSIGLLTNEEIVFYGGCRRSDLI
>NZ_CP017540.1|WP_006248324.1|1124677_1124908_+|hypothetical-protein
MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAEMNGFSLKPQKRSTYFADHYGCGIHAVETYDNE
>NZ_CP017540.1|WP_006248326.1|1124239_1124557_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNTLDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSAFKA
>NZ_CP017540.1|WP_006248329.1|1123484_1123742_+|hypothetical-protein
MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLREQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF
>NZ_CP017540.1|WP_006248332.1|1121961_1123050_+|AAA-family-ATPase
MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDSQCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQTLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYILYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNGFNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCAIDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGHALNTMDESKENFDQEFQSLAERIIQLTN
>NZ_CP017540.1|WP_006248333.1|1121465_1121897_+|hypothetical-protein
MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNYVYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFEASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA
>NZ_CP017540.1|WP_006248334.1|1119359_1121462_+|integrating-conjugative-element-protein
MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGYRTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTCGNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGLYQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDKKDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLCTEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEAALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLLLIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAITQQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSDGSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWDVNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVWAKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVNARRRNQEADYIINAPKGN
>NZ_CP017540.1|WP_006253298.1|1119054_1119333_+|hypothetical-protein
MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFPHSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH
>NZ_CP017540.1|WP_006248336.1|1117654_1118086_-|DUF3577-domain-containing-protein
MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAALVGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDSKFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE
>NZ_CP017540.1|WP_032845458.1|1116644_1117637_-|ABC-transporter-ATP-binding-protein
MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVGESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPMTSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLGVVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGNPPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS
>NZ_CP017540.1|WP_015587024.1|1126047_1126779_-|transposase
MRVSFLFRLIFDTHILNGKLSLFRVNCQIKSDLLHLNTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLNKKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYKNNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYRKGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC
>NZ_CP017540.1|WP_041447934.1|1126777_1127818_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSKELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKAAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017540.1|WP_006252261.1|1127884_1128178_-|YfcZ/YiiS-family-protein
MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAVQAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR
>NZ_CP017540.1|WP_015484369.1|1128179_1128434_-|luciferase
MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQQLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV
>NZ_CP017540.1|WP_015484370.1|1128443_1129220_-|LLM-class-flavin-dependent-oxidoreductase
MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYILGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAIAAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV
>NZ_CP017540.1|WP_006248321.1|1129303_1129942_-|thioredoxin-domain-containing-protein
MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQKEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWALAMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNKQVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK
>NZ_CP017540.1|WP_006248320.1|1130005_1130275_-|DUF1040-family-protein
MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKALSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND
>NZ_CP017540.1|WP_006248319.1|1130361_1131456_+|molybdenum-cofactor-guanylyltransferase
MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILARLSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFVPCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQQQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLLEKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTETKQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATDYPLERENWLDINNIGGIADFIKNWLENKAS
>NZ_CP017540.1|WP_006248318.1|1131510_1135707_-|autotransporter-domain-containing-protein
MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENKGPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGYKNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNAGTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPDHWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNRSAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSSIANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGAGIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQGRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKHARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLKGNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNGILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNKHDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTPSCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQADQTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKGNGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGNKASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTNVPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSRRLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLIKASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQSDKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEFNEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGANIGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLDDWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGFINGNEIKKQHFAGVKLGYSW
>NZ_CP017540.1|WP_006252258.1|1135855_1136629_+|D-hexose-6-phosphate-mutarotase
MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNAEQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR

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Crispr_ID: NZ_CP017540_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017540_3

1138036-1138110

Orphan

Consensus_repeat	Method
TTCTGGTGTCTGCCACCGCTAGG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP017540_3

>merge|NZ_CP017540|3|1138036-1138110|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGGTCTTTATACCCTAGATTAGTATCAGGTCTTTCTGGTGCCTGCCACCGCTAGG

>NZ_CP017540|3|3|1138036-1138110|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGG	TCTTTATACCCTAGATTAGTATCAGGTCT
TTCTGGTGCCTGCCACCGCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017540.1\|WP_006250508.1\|1147862_1148084_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006253491.1\|1140479_1140995_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NZ_CP017540.1\|WP_006248321.1\|1129303_1129942_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|182863
NZ_CP017540.1\|WP_006249414.1\|1146044_1146977_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226605
NZ_CP017540.1\|WP_147008895.1\|1148266_1150192_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP017540.1\|WP_006253494.1\|1146978_1147776_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224026
NZ_CP017540.1\|WP_006249416.1\|1144069_1145803_-\|C4-dicarboxylic-acid-transporter-DauA	unknown	unknown	gnl\|CDD\|183265
NZ_CP017540.1\|WP_006252261.1\|1127884_1128178_-\|YfcZ/YiiS-family-protein	unknown	unknown	gnl\|CDD\|367851
NZ_CP017540.1\|WP_006248320.1\|1130005_1130275_-\|DUF1040-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP017540.1\|WP_006253492.1\|1141149_1143978_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP017540.1\|WP_006248318.1\|1131510_1135707_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP017540.1\|WP_006248319.1\|1130361_1131456_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|237727
NZ_CP017540.1\|WP_006250513.1\|1139467_1139671_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP017540.1\|WP_015586954.1\|1136782_1137823_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017540.1\|WP_015484370.1\|1128443_1129220_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP017540.1\|WP_041447934.1\|1126777_1127818_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017540.1\|WP_006252258.1\|1135855_1136629_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|223748
NZ_CP017540.1\|WP_006248316.1\|1138226_1139468_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP017540.1\|WP_006250186.1\|1150265_1150631_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|234983
NZ_CP017540.1\|WP_015484369.1\|1128179_1128434_-\|luciferase	unknown	unknown	gnl\|CDD\|274646

Protein	Function_ID	Function_description	E-value
NZ_CP017540.1\|WP_006253491.1\|1140479_1140995_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	2.51083e-99
NZ_CP017540.1\|WP_006248321.1\|1129303_1129942_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	7.23879e-76
NZ_CP017540.1\|WP_006249414.1\|1146044_1146977_+\|ABC-transporter-permease	gnl\|CDD\|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.18432e-98
NZ_CP017540.1\|WP_147008895.1\|1148266_1150192_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	0
NZ_CP017540.1\|WP_006253494.1\|1146978_1147776_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	2.52485e-138
NZ_CP017540.1\|WP_006249416.1\|1144069_1145803_-\|C4-dicarboxylic-acid-transporter-DauA	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	0
NZ_CP017540.1\|WP_006252261.1\|1127884_1128178_-\|YfcZ/YiiS-family-protein	gnl\|CDD\|367851	pfam04175, DUF406, Protein of unknown function (DUF406). Members of this family appear to be found only in gamma proteobacteria. The function of this protein family is undetermined. Solution of the structures of the two members of this family investigated bear some resemblance to that of the single domain enzyme pterin-4a-carbinolamine dehydratase, PDC. Although the residues of PCDs involved in binding of metabolite are not conserved in the two structures under study, they do correspond to a surface-region structurally aligned with residues that are highly conserved, eg Glu 89, suggesting that this region is also involved in binding of a ligand, thereby possibly constituting a catalytic site of a yet uncharacterized enzyme specific for gamma proteobacteria.	7.66966e-31
NZ_CP017540.1\|WP_006248320.1\|1130005_1130275_-\|DUF1040-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	8.73032e-44
NZ_CP017540.1\|WP_006253492.1\|1141149_1143978_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP017540.1\|WP_006248318.1\|1131510_1135707_-\|autotransporter-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	0
NZ_CP017540.1\|WP_006248319.1\|1130361_1131456_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|237727	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional.	0
NZ_CP017540.1\|WP_006250513.1\|1139467_1139671_-\|hypothetical-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	0.00480946
NZ_CP017540.1\|WP_015586954.1\|1136782_1137823_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.80308e-24
NZ_CP017540.1\|WP_015484370.1\|1128443_1129220_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.54784e-136
NZ_CP017540.1\|WP_041447934.1\|1126777_1127818_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.24151e-24
NZ_CP017540.1\|WP_006252258.1\|1135855_1136629_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|223748	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism].	2.73894e-101
NZ_CP017540.1\|WP_006248316.1\|1138226_1139468_-\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	8.01844e-62
NZ_CP017540.1\|WP_006250186.1\|1150265_1150631_+\|CidA/LrgA-family-protein	gnl\|CDD\|234983	PRK01821, PRK01821, hypothetical protein; Provisional.	3.61345e-25
NZ_CP017540.1\|WP_015484369.1\|1128179_1128434_-\|luciferase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	3.54605e-12

>NZ_CP017540.1|WP_015586954.1|1136782_1137823_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSKELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017540.1|WP_006252258.1|1135855_1136629_+|D-hexose-6-phosphate-mutarotase
MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNAEQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR
>NZ_CP017540.1|WP_006248318.1|1131510_1135707_-|autotransporter-domain-containing-protein
MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENKGPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGYKNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNAGTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPDHWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNRSAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSSIANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGAGIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQGRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKHARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLKGNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNGILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNKHDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTPSCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQADQTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKGNGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGNKASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTNVPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSRRLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLIKASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQSDKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEFNEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGANIGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLDDWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGFINGNEIKKQHFAGVKLGYSW
>NZ_CP017540.1|WP_006248319.1|1130361_1131456_+|molybdenum-cofactor-guanylyltransferase
MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILARLSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFVPCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQQQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLLEKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTETKQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATDYPLERENWLDINNIGGIADFIKNWLENKAS
>NZ_CP017540.1|WP_006248320.1|1130005_1130275_-|DUF1040-family-protein
MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKALSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND
>NZ_CP017540.1|WP_006248321.1|1129303_1129942_-|thioredoxin-domain-containing-protein
MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQKEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWALAMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNKQVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK
>NZ_CP017540.1|WP_015484370.1|1128443_1129220_-|LLM-class-flavin-dependent-oxidoreductase
MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYILGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAIAAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV
>NZ_CP017540.1|WP_015484369.1|1128179_1128434_-|luciferase
MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQQLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV
>NZ_CP017540.1|WP_006252261.1|1127884_1128178_-|YfcZ/YiiS-family-protein
MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAVQAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR
>NZ_CP017540.1|WP_041447934.1|1126777_1127818_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSKELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKAAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017540.1|WP_006248316.1|1138226_1139468_-|HipA-domain-containing-protein
MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWLSSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKPKLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLESSDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEYLAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYEASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPAYDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQNVAKEIGIPRQEQEQMKFAFNV
>NZ_CP017540.1|WP_006250513.1|1139467_1139671_-|hypothetical-protein
MFTQTLLAQRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLRK
>NZ_CP017540.1|WP_006253491.1|1140479_1140995_-|single-stranded-DNA-binding-protein
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEPAMNNFDDDIPF
>NZ_CP017540.1|WP_006253492.1|1141149_1143978_+|excinuclease-ABC-subunit-UvrA
MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKGEHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLAESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGACPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLETPFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSVREELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQKEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVHGGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKKVKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFDKVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREFFAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEIIATGTPEEVAKDKRSHTARFLKEILAKG
>NZ_CP017540.1|WP_006249416.1|1144069_1145803_-|C4-dicarboxylic-acid-transporter-DauA
MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTVGVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVTQQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDFLGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAVFIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRIDWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPFLGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLLVVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTIAEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCDAVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDLESAFDKIRQAN
>NZ_CP017540.1|WP_006249414.1|1146044_1146977_+|ABC-transporter-permease
MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFPDLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLASILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGLFDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGGVDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNGIGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG
>NZ_CP017540.1|WP_006253494.1|1146978_1147776_+|ABC-transporter-ATP-binding-protein
MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAGKSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEENMALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLLMASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDRTVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN
>NZ_CP017540.1|WP_006250508.1|1147862_1148084_+|hypothetical-protein
MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLIKLTNLALLVLSIYVFLTLGRKLRQLKEVL
>NZ_CP017540.1|WP_147008895.1|1148266_1150192_+|ATP-dependent-DNA-helicase
MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKFATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKGKIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAEDSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTGFGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLGKAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSLGRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQLKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPDTNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSKSRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCKIQGGDPFNDIQIPEAVITLKQGVGRLIRDLTDRGVVIICDSRLVMRNYGQTFLKSLPPSRRTRDLGNVIQFLKQK
>NZ_CP017540.1|WP_006250186.1|1150265_1150631_+|CidA/LrgA-family-protein
MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILFGCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTLVSVVAIGVFAQWIFHYKRG

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Crispr_ID: NZ_CP017540_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017540_4

1611967-1612999

TypeI

Consensus_repeat	Method
GTTTCAATTCNCAGCCACGCGTAGGTGGCTG	CRT
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	PILER-CR
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	CRISPRCasFinder

15 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

The CRISPR arrays of NZ_CP017540_4

>merge|NZ_CP017540|4|1611967-1612999|CRT,PILER-CR,CRISPRCasFinder
ATTTCAATATATATTGATGCGAAGGTAGCAGCCAATGGCGAAAACATAGGATTTGTGGGTACACCGTTTCAATACACAGCCACGCGAAGGTGGCTGCCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCAAATTCAAGATATACAATTGACCGCAACAGATAAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCGGGGATTAACCGAACAGGATTGGATTCGTTATGAGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCCTCTAGCATTAAAATCCAATCGGTAAACGGTAAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCCCAACAATGCTTTTCTTTGTATAACCAGCCACGAGTTTCAATTCACAGCCACGCGTAGGTGGCTGGTATCATTTATCGCCCGAAAAATCCAAAAATCGCAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTAAAAGATTACTACTACCCTATGGCAATAAGTGTAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGCGCAAGCATTGCACCACGGTAACAACGGCTGCTGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCACGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGG

>NZ_CP017540|4|1|1611967-1612998|CRT
ATTTCAATATATATTGATGCGAAGGTAGCAG	CCAATGGCGAAAACATAGGATTTGTGGGTACACC
GTTTCAATACACAGCCACGCGAAGGTGGCTG	CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CAAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	GTATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG

>NZ_CP017540|4|1|1612032-1612998|PILER-CR
GTTTCAATACACAGCCACGCGAAGGTGGCTG	CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CAAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	GTATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG

>NZ_CP017540|4|4|1612032-1612999|CRISPRCasFinder
GTTTCAATACACAGCCACGCGAAGGTGGCTGC	CTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	AAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGG	TATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	CGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GCACTAGGGCGAGTGCAGACGGGCAAGTGTCGGA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	TTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017540.1\|WP_006253512.1\|1603232_1604765_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP017540.1\|WP_006248816.1\|1605201_1605603_+\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|182380
NZ_CP017540.1\|WP_006248812.1\|1607499_1608573_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP017540.1\|WP_006253506.1\|1622558_1623695_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP017540.1\|WP_006248819.1\|1602254_1603007_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP017540.1\|WP_006248119.1\|1608650_1610153_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP017540.1\|WP_006248114.1\|1613189_1613483_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017540.1\|WP_006248821.1\|1600244_1601051_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
NZ_CP017540.1\|WP_006248111.1\|1614959_1615880_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248820.1\|1601052_1602243_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP017540.1\|WP_134916814.1\|1614665_1614959_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_134983790.1\|1621938_1622400_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017540.1\|WP_006248107.1\|1619278_1619956_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP017540.1\|WP_006253509.1\|1615906_1616581_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP017540.1\|WP_006248118.1\|1610306_1611782_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP017540.1\|WP_006248109.1\|1616580_1617444_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP017540.1\|WP_006248113.1\|1613549_1614563_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017540.1\|WP_006248814.1\|1606548_1607232_-\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP017540.1\|WP_006248815.1\|1605672_1606512_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP017540.1\|WP_031192850.1\|1617453_1619235_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245

Protein	Function_ID	Function_description	E-value
NZ_CP017540.1\|WP_006253512.1\|1603232_1604765_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	3.89543e-96
NZ_CP017540.1\|WP_006248816.1\|1605201_1605603_+\|H-NS-histone-family-protein	gnl\|CDD\|182380	PRK10328, PRK10328, DNA-binding protein StpA.	2.45258e-33
NZ_CP017540.1\|WP_006248812.1\|1607499_1608573_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP017540.1\|WP_006253506.1\|1622558_1623695_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.08341e-47
NZ_CP017540.1\|WP_006248819.1\|1602254_1603007_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.96029e-145
NZ_CP017540.1\|WP_006248119.1\|1608650_1610153_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017540.1\|WP_006248114.1\|1613189_1613483_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.20021e-33
NZ_CP017540.1\|WP_006248821.1\|1600244_1601051_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	4.20082e-123
NZ_CP017540.1\|WP_006248820.1\|1601052_1602243_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP017540.1\|WP_006253509.1\|1615906_1616581_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.93186e-40
NZ_CP017540.1\|WP_006248107.1\|1619278_1619956_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.38632e-113
NZ_CP017540.1\|WP_006248118.1\|1610306_1611782_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP017540.1\|WP_006248109.1\|1616580_1617444_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.47515e-155
NZ_CP017540.1\|WP_006248113.1\|1613549_1614563_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP017540.1\|WP_006248814.1\|1606548_1607232_-\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	6.07933e-73
NZ_CP017540.1\|WP_006248815.1\|1605672_1606512_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.87146e-173
NZ_CP017540.1\|WP_031192850.1\|1617453_1619235_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0

>NZ_CP017540.1|WP_006248118.1|1610306_1611782_-|ribonuclease-G
MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQRVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM
>NZ_CP017540.1|WP_006248119.1|1608650_1610153_-|lysine--tRNA-ligase
MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK
>NZ_CP017540.1|WP_006248812.1|1607499_1608573_+|homoserine-O-acetyltransferase
MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLLCHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINPKTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLTYRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSDFGHDAFLVDYDFFEPMIKAGLAK
>NZ_CP017540.1|WP_006248814.1|1606548_1607232_-|DUF218-domain-containing-protein
MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDSLTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVNQLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPFTIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEPESLEDIRSK
>NZ_CP017540.1|WP_006248815.1|1605672_1606512_+|formyltetrahydrofolate-deformylase
MLQQHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENETKRFFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL
>NZ_CP017540.1|WP_006248816.1|1605201_1605603_+|H-NS-histone-family-protein
MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALDSGKKLEDFAI
>NZ_CP017540.1|WP_006253512.1|1603232_1604765_-|Na+/H+-antiporter-NhaC-family-protein
MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFMLTNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAFANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMKTGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMAFSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEKKH
>NZ_CP017540.1|WP_006248819.1|1602254_1603007_-|SDR-family-oxidoreductase
MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQFGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQMIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVLWLNQQPEHVNINRVEVMPVAQTSSALNVARNI
>NZ_CP017540.1|WP_006248820.1|1601052_1602243_-|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQAEFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVQKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQILAKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEALEAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKILNGGE
>NZ_CP017540.1|WP_006248821.1|1600244_1601051_-|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNGADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLCANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQNTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKPEQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK
>NZ_CP017540.1|WP_006248114.1|1613189_1613483_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVTPAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL
>NZ_CP017540.1|WP_006248113.1|1613549_1614563_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGIEGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGVGLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAVTLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP017540.1|WP_134916814.1|1614665_1614959_-|DUF3800-domain-containing-protein
MQHNKISFEDSVNNSLIQASDVIAGLLAGIGEQIQKYNEQEFYNEFISKLNPNHLENLKLLAQIYQNSIYKSNGLFTHFFAPLSFICRLQNFIFSYK
>NZ_CP017540.1|WP_006248111.1|1614959_1615880_-|hypothetical-protein
MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGSNFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKLGSKELRKVLEWINENNLCIHFALYDWVYFYDVDIIDSALIESDVCSVWKYLSEKIGNSNRYKEIKDYQRKVGLDKQSDDIIYLFYIKELLHDFIINNLQWFLSEIYNNHYKKIDNQEKTVFLDNLYNMIKGSEKYKVLEFFLEKIDRNKYLSFIYDKLDSEMNEDKTFIMLVEDMSPPYQNYLNTFPLSEFYFDKGMEHVFIDY
>NZ_CP017540.1|WP_006253509.1|1615906_1616581_-|CRISPR-associated-protein-Cas4
MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIHNEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDLKTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIFSTELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVGVFGSLL
>NZ_CP017540.1|WP_006248109.1|1616580_1617444_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDVCLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAREITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTEGLTGVTVEELL
>NZ_CP017540.1|WP_031192850.1|1617453_1619235_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSKGNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAKDQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDANVVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVFGGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDASTVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELSENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLLLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKAVLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDEQGRFAIGYYHQKQSYFAKKETTESIEN
>NZ_CP017540.1|WP_006248107.1|1619278_1619956_-|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQQRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFAANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPFYAEEVKS
>NZ_CP017540.1|WP_134983790.1|1621938_1622400_-|hypothetical-protein
MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK
>NZ_CP017540.1|WP_006253506.1|1622558_1623695_-|transposase
MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYEQDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKFKKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFVSIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKNKVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSAKGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPCCNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	NZ_CP017540.1	1533050-1533086	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	NZ_CP017540.1	1533402-1533435	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	NZ_CP017540.1	1533712-1533746	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	NZ_CP017540.1	1533051-1533086	1.0
NZ_CP017540_4	4.29\|1612932\|36\|NZ_CP017540\|CRISPRCasFinder	1612932-1612967	36	NZ_CP017540.1	2635460-2635495	1.0

1. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to position: 1533050-1533086, mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to position: 1533402-1533435, mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

3. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to position: 1533712-1533746, mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

4. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to position: 1533051-1533086, mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

5. spacer 4.29|1612932|36|NZ_CP017540|CRISPRCasFinder matches to position: 2635460-2635495, mismatch: 0, identity: 1.0

tttaccgtagatcaaaatgccattgctcgttatagg	CRISPR spacer
tttaccgtagatcaaaatgccattgctcgttatagg	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18776	0	1.0
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18851	0	1.0
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18816	0	1.0
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19012	0	1.0
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19177	0	1.0
NZ_CP017540_4	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18776	0	1.0
NZ_CP017540_4	4.20\|1612332\|34\|NZ_CP017540\|CRISPRCasFinder	1612332-1612365	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19193-19226	0	1.0
NZ_CP017540_4	4.20\|1612332\|34\|NZ_CP017540\|CRISPRCasFinder	1612332-1612365	34	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19018-19051	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18424	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18499	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18464	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18660	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18825	0	1.0
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18424	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18170	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18170	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18170	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18370	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18599	0	1.0
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18170	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18775	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18850	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18815	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19011	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19176	0	1.0
NZ_CP017540_4	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18775	0	1.0
NZ_CP017540_4	4.28\|1612866\|34\|NZ_CP017540\|CRISPRCasFinder	1612866-1612899	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	3967-4000	0	1.0
NZ_CP017540_4	4.6\|1612331\|35\|NZ_CP017540\|CRT,PILER-CR	1612331-1612365	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19192-19226	1	0.971
NZ_CP017540_4	4.6\|1612331\|35\|NZ_CP017540\|CRT,PILER-CR	1612331-1612365	35	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19017-19051	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18425	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18500	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18465	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18661	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18826	1	0.971
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18425	1	0.971
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18171	1	0.972
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18171	1	0.972
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18171	1	0.972
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18371	1	0.972
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18600	1	0.972
NZ_CP017540_4	4.12\|1612730\|36\|NZ_CP017540\|CRT,PILER-CR	1612730-1612765	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18171	1	0.972
NZ_CP017540_4	4.14\|1612865\|35\|NZ_CP017540\|CRT,PILER-CR	1612865-1612899	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	3966-4000	1	0.971
NZ_CP017540_1	1.1\|914231\|29\|NZ_CP017540\|CRISPRCasFinder	914231-914259	29	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	22354-22382	5	0.828
NZ_CP017540_3	3.1\|1138059\|29\|NZ_CP017540\|CRISPRCasFinder	1138059-1138087	29	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	22354-22382	5	0.828
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19416	6	0.824
NZ_CP017540_4	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19425	6	0.824
NZ_CP017540_2	2.1\|1125875\|29\|NZ_CP017540\|CRISPRCasFinder	1125875-1125903	29	NZ_CP045463	Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence	37941-37969	7	0.759
NZ_CP017540_2	2.1\|1125875\|29\|NZ_CP017540\|CRISPRCasFinder	1125875-1125903	29	NZ_CP045512	Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence	37941-37969	7	0.759
NZ_CP017540_2	2.1\|1125875\|29\|NZ_CP017540\|CRISPRCasFinder	1125875-1125903	29	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	104085-104113	7	0.759
NZ_CP017540_2	2.1\|1125875\|29\|NZ_CP017540\|CRISPRCasFinder	1125875-1125903	29	NZ_CP012834	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence	14210-14238	7	0.759
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19417	7	0.8
NZ_CP017540_4	4.11\|1612664\|35\|NZ_CP017540\|CRT,PILER-CR	1612664-1612698	35	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19426	7	0.8
NZ_CP017540_4	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	HM144385	Brochothrix phage NF5, complete genome	32998-33032	10	0.714
NZ_CP017540_4	4.21\|1612398\|35\|NZ_CP017540\|CRISPRCasFinder	1612398-1612432	35	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	368774-368808	11	0.686
NZ_CP017540_4	4.23\|1612531\|34\|NZ_CP017540\|CRISPRCasFinder	1612531-1612564	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	710003-710036	11	0.676

1. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

3. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

4. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

5. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

6. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

7. spacer 4.20|1612332|34|NZ_CP017540|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

8. spacer 4.20|1612332|34|NZ_CP017540|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

9. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

10. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

11. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

12. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

13. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

14. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

15. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

16. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

17. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

18. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

19. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

20. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

21. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

22. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

23. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

24. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

25. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

26. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

27. spacer 4.28|1612866|34|NZ_CP017540|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

gcactagggcgagtgcagacgggcaagtgtcgga	CRISPR spacer
gcactagggcgagtgcagacgggcaagtgtcgga	Protospacer
**********************************

28. spacer 4.6|1612331|35|NZ_CP017540|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

29. spacer 4.6|1612331|35|NZ_CP017540|CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

30. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

31. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

32. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

33. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

34. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

35. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

36. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

37. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

38. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

39. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

40. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

41. spacer 4.12|1612730|36|NZ_CP017540|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

42. spacer 4.14|1612865|35|NZ_CP017540|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

ggcactagggcgagtgcagacgggcaagtgtcgga	CRISPR spacer
agcactagggcgagtgcagacgggcaagtgtcgga	Protospacer
.**********************************

43. spacer 1.1|914231|29|NZ_CP017540|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

agacctgatactaatctagggtataaaga	CRISPR spacer
aaacctcataataatctagggtataaggc	Protospacer
*.**** *** ***************.*

44. spacer 3.1|1138059|29|NZ_CP017540|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

tctttataccctagattagtatcaggtct	CRISPR spacer
gccttataccctagattattatgaggttt	Protospacer
 *.*************** *** ****.*

45. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

46. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

47. spacer 2.1|1125875|29|NZ_CP017540|CRISPRCasFinder matches to NZ_CP045463 (Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

48. spacer 2.1|1125875|29|NZ_CP017540|CRISPRCasFinder matches to NZ_CP045512 (Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

49. spacer 2.1|1125875|29|NZ_CP017540|CRISPRCasFinder matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
taattttctaatgcttgctatctgctcaa	Protospacer
 . ******.********.******* .*

50. spacer 2.1|1125875|29|NZ_CP017540|CRISPRCasFinder matches to NZ_CP012834 (Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

51. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

52. spacer 4.11|1612664|35|NZ_CP017540|CRT,PILER-CR matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

53. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 10, identity: 0.714

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
ataattatcaacatctggtcgtgttactggtcgat	Protospacer
... ******.****** ***********  * *.

54. spacer 4.21|1612398|35|NZ_CP017540|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

tttaattaataaaatagctttagctttagatttaa	CRISPR spacer
ccaatctaataaaataattttagctttagatcggg	Protospacer
.. * .**********..*************. ..

55. spacer 4.23|1612531|34|NZ_CP017540|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 11, identity: 0.676

tatcatttatcgcccgaaaaatccaaaaatcgca	CRISPR spacer
acaagcttatcgcccaaaaaatccaacaataaaa	Protospacer
    ..*********.********** *** . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44706 : 52033

Mannheimia_phage(80.0%)

transposase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006248673.1\|44706_44949_-	hypothetical protein	A0A0M3LSI9	Mannheimia_phage	4.4e-45	100.0
WP_015483985.1\|44949_47010_-\|tail	Variable tail fiber protein H	A0A0M3LRW6	Mannheimia_phage	0.0e+00	99.9
WP_006253441.1\|47006_47564_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	3.9e-105	98.9
WP_006253442.1\|47512_48508_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	1.5e-99	85.6
WP_006251296.1\|48560_48749_-	hypothetical protein	A0A0M3LSQ8	Mannheimia_phage	2.2e-28	100.0
WP_006253443.1\|48778_49147_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.6e-62	100.0
WP_006253444.1\|49146_49521_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	1.5e-63	100.0
WP_006253446.1\|50010_50814_-\|transposase	transposase	A0A0M3LPN5	Mannheimia_phage	2.4e-31	35.9
WP_006248972.1\|50858_51137_-	DNA-binding protein	F6MII4	Haemophilus_phage	1.0e-16	57.5
WP_006248970.1\|51313_52033_+	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	4.4e-64	60.0

DBSCAN-SWA_2

574299 : 658271

Mannheimia_phage(17.02%)

transposase,protease,tRNA,head,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249683.1\|574299_574977_-	helix-turn-helix transcriptional regulator	A0A0M3LP76	Mannheimia_phage	6.2e-36	36.6
WP_006253637.1\|575190_575409_+	transcriptional regulator	A0A0M3LPY8	Mannheimia_phage	1.1e-21	71.8
WP_006249681.1\|575418_577389_+\|transposase	transposase	C9DGL1	Escherichia_phage	4.3e-146	44.1
WP_006253638.1\|577568_578057_-	hypothetical protein	NA	NA	NA	NA
WP_006249679.1\|578088_579030_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-63	48.4
WP_006249678.1\|579032_579347_+	hypothetical protein	F6MII9	Haemophilus_phage	1.6e-26	61.5
WP_006249677.1\|579358_579595_+	hypothetical protein	NA	NA	NA	NA
WP_006249676.1\|579578_579872_+	hypothetical protein	NA	NA	NA	NA
WP_051133738.1\|579993_580212_+	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.1e-10	85.0
WP_006249674.1\|580221_580404_+	hypothetical protein	A0A0M3LSN0	Mannheimia_phage	1.1e-19	81.7
WP_006249673.1\|580420_580810_+	hypothetical protein	NA	NA	NA	NA
WP_006249672.1\|580858_581146_+	hypothetical protein	NA	NA	NA	NA
WP_006249671.1\|581264_581810_+	DUF1018 domain-containing protein	A0A2I7S9B8	Vibrio_phage	7.5e-16	33.2
WP_006249670.1\|581796_582330_+	hypothetical protein	F6MIJ5	Haemophilus_phage	5.0e-41	53.7
WP_006249669.1\|582494_582854_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	1.1e-23	45.1
WP_006249668.1\|582989_583499_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.1e-56	66.2
WP_006249667.1\|583501_583771_+	DUF2644 domain-containing protein	NA	NA	NA	NA
WP_015484419.1\|583764_584112_+	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	3.4e-30	60.9
WP_006249664.1\|584290_584626_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_006249663.1\|584627_584924_+	hypothetical protein	A0A0C4UR00	Shigella_phage	3.6e-25	58.9
WP_006249662.1\|584946_585519_+	DUF3486 family protein	M4MCR3	Vibrio_phage	8.0e-37	45.5
WP_006249661.1\|585518_587075_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.4e-160	60.2
WP_006249659.1\|587193_588648_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.8e-118	46.8
WP_006249658.1\|588640_589918_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	1.3e-55	48.6
WP_006249656.1\|590119_590464_-	hypothetical protein	NA	NA	NA	NA
WP_006249655.1\|590527_590992_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	1.6e-14	35.2
WP_006249654.1\|591226_592342_+	hypothetical protein	A4JWJ9	Burkholderia_virus	2.3e-64	38.4
WP_006249653.1\|592372_593299_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.4e-75	48.7
WP_006249652.1\|593367_593649_+	hypothetical protein	NA	NA	NA	NA
WP_006249651.1\|593648_594083_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	7.7e-16	40.7
WP_006249650.1\|594088_594586_+	hypothetical protein	NA	NA	NA	NA
WP_006249649.1\|594670_596056_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	3.2e-95	43.3
WP_006249648.1\|596066_596582_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.6e-07	25.3
WP_006249647.1\|596677_596992_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_080542703.1\|596988_597141_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_006249646.1\|597119_597422_-	hypothetical protein	NA	NA	NA	NA
WP_147010026.1\|597469_600127_+\|tail	phage tail tape measure protein	Q19UR0	Mannheimia_phage	1.4e-14	47.4
WP_006249644.1\|600136_601060_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	3.6e-18	29.1
WP_006249643.1\|601043_601271_+	membrane protein	A4JWL2	Burkholderia_virus	7.1e-13	47.8
WP_006249642.1\|601263_602328_+	hypothetical protein	A4JWL3	Burkholderia_virus	5.6e-68	41.6
WP_006249641.1\|602314_602851_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_006249640.1\|602905_603268_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_006249639.1\|603277_604381_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	9.4e-58	37.3
WP_006249638.1\|604373_604940_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	2.8e-42	48.7
WP_006249637.1\|604949_607229_+\|tail	tail fiber protein	A0A0R6PHL4	Moraxella_phage	1.4e-18	33.3
WP_006249636.1\|607229_607832_+	hypothetical protein	A0A0R6PC75	Moraxella_phage	5.0e-05	31.4
WP_006249635.1\|607815_608091_+	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	5.4e-31	73.5
WP_006249634.1\|608090_608378_+	hypothetical protein	NA	NA	NA	NA
WP_006249632.1\|608544_609249_+	hypothetical protein	NA	NA	NA	NA
WP_006249630.1\|609612_610401_+	hypothetical protein	F6MIM2	Haemophilus_phage	2.5e-105	68.3
WP_006249629.1\|610437_612876_-	S6 family igA-specific metalloendopeptidase	Q9LA58	Enterobacterial_phage	6.0e-49	33.7
WP_147010027.1\|613195_614962_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.0e-13	25.5
WP_006249627.1\|615116_616028_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_006253685.1\|616150_617233_+	DNA polymerase IV	NA	NA	NA	NA
WP_006253684.1\|617320_618190_+\|protease	protease HtpX	NA	NA	NA	NA
WP_006253683.1\|618243_618738_-	DedA family protein	NA	NA	NA	NA
WP_006249873.1\|618938_619763_+	formate transporter FocA	NA	NA	NA	NA
WP_006249872.1\|619852_622177_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.4e-159	41.4
WP_147008890.1\|622411_623437_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	1.7e-90	53.9
WP_006250031.1\|623685_624426_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	4.2e-22	25.7
WP_147010028.1\|624556_626623_+	oligopeptidase A	A0A1V0SD92	Indivirus	1.2e-50	23.8
WP_006250033.1\|626744_627902_+	chorismate mutase	NA	NA	NA	NA
WP_006250034.1\|627960_628176_-	YdcH family protein	NA	NA	NA	NA
WP_006250035.1\|628365_629181_+	hypothetical protein	NA	NA	NA	NA
WP_006250036.1\|629242_629887_-	adenylate kinase	A0A1B4XWI3	Tenacibaculum_phage	6.5e-11	36.6
WP_006253681.1\|629998_631702_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_006253680.1\|631736_632135_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_015484415.1\|632162_633299_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.8e-19	27.5
WP_015484414.1\|633295_634111_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005624547.1\|634110_634992_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006250037.1\|634988_635657_-	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.0e-10	28.9
WP_006250039.1\|636000_637284_-	MFS transporter	NA	NA	NA	NA
WP_006250041.1\|637449_641166_+	methionine synthase	A0A140XBC7	Dickeya_phage	1.3e-18	70.0
WP_006250042.1\|641273_643277_+	N-6 DNA methylase	B3GAM1	uncultured_virus	1.5e-16	37.3
WP_020831139.1\|643375_644743_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_006251873.1\|644756_645491_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_006253678.1\|645493_646129_+	hypothetical protein	NA	NA	NA	NA
WP_006249329.1\|646396_647134_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-13	27.6
WP_006249330.1\|647130_648099_-	iron ABC transporter permease	NA	NA	NA	NA
WP_006253677.1\|648279_648615_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006249042.1\|648598_648922_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_006249043.1\|648911_650798_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_006249044.1\|650845_651628_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_006249045.1\|651676_652837_-	hypothetical protein	NA	NA	NA	NA
WP_006249046.1\|652896_653913_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	7.2e-89	48.9
WP_006249047.1\|654000_654162_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249048.1\|654139_655141_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249049.1\|655142_655547_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006249050.1\|655681_655864_+	hypothetical protein	NA	NA	NA	NA
WP_006249051.1\|655867_656197_+	hypothetical protein	NA	NA	NA	NA
WP_006249052.1\|656232_656985_-	Fic family protein	NA	NA	NA	NA
WP_006249053.1\|657023_658271_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-119	54.4

DBSCAN-SWA_3

989005 : 995790

Organic_Lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006248955.1\|989005_990058_-	rod shape-determining protein	F2Y2E1	Organic_Lake_phycodnavirus	1.2e-06	22.1
WP_006248954.1\|990172_990802_-	amino acid transporter	NA	NA	NA	NA
WP_006248953.1\|990905_991553_+	uridine kinase	A0A1V0SAA3	Catovirus	4.7e-33	36.6
WP_006248952.1\|991567_992149_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.9e-27	38.4
WP_006248951.1\|992226_992382_+	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_006248950.1\|992510_993113_-	DedA family protein	NA	NA	NA	NA
WP_006248949.1\|993114_994134_-	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	1.9e-33	32.9
WP_006248948.1\|994269_994998_-	carboxy-S-adenosyl-L-methionine synthase CmoA	H9YRL8	environmental_Halophage	7.1e-22	29.1
WP_006253612.1\|995007_995790_-	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	1.3e-05	36.4

DBSCAN-SWA_4

1234055 : 1332081

114

Mannheimia_phage(84.42%)

terminase,integrase,capsid,transposase,protease,tRNA,tail

attL 1233841:1233859|attR 1255987:1256005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1233841:1233859	attL	NA	NA	NA	NA
WP_006250229.1\|1234055_1235006_-\|capsid	phage capsid protein	E5G6M6	Salmonella_phage	4.0e-49	37.1
WP_006250228.1\|1235016_1235676_-	hypothetical protein	NA	NA	NA	NA
WP_006250227.1\|1235685_1235892_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.7e-05	35.0
WP_006250224.1\|1236361_1237576_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.8e-55	34.1
WP_006249040.1\|1237947_1238685_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_006249039.1\|1238716_1239103_-	RidA family protein	NA	NA	NA	NA
WP_006249038.1\|1239183_1240185_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	5.3e-76	46.5
WP_006249037.1\|1240251_1240593_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_006250748.1\|1240785_1242126_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_006253559.1\|1242287_1243253_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_006250304.1\|1243519_1245190_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	3.6e-255	77.5
WP_006250302.1\|1245350_1245794_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_006250301.1\|1245844_1246420_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_006250739.1\|1246526_1247417_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006250738.1\|1247483_1248050_-	elongation factor P	NA	NA	NA	NA
WP_006253558.1\|1248216_1248786_+	hypothetical protein	NA	NA	NA	NA
WP_006249378.1\|1248839_1249832_+	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_006249379.1\|1249931_1251335_-\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	6.9e-82	37.7
WP_015484287.1\|1251808_1252798_+\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	7.6e-184	100.0
WP_015484286.1\|1252794_1253052_-	hypothetical protein	A0A0M3LQR4	Mannheimia_phage	1.2e-40	100.0
WP_020824296.1\|1253078_1253570_-	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	5.4e-98	100.0
WP_006250263.1\|1254069_1254534_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_006250262.1\|1254517_1254721_-	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_006250261.1\|1254717_1255245_-	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.7e-86	100.0
WP_006250260.1\|1255322_1255775_-	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.8e-85	100.0
WP_006250258.1\|1255984_1256620_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	3.8e-120	100.0
1255987:1256005	attR	NA	NA	NA	NA
WP_006250257.1\|1256616_1257411_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	5.4e-148	100.0
WP_006250256.1\|1258062_1258275_-	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	5.8e-33	100.0
WP_006250255.1\|1258408_1258888_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	2.4e-79	100.0
WP_006250254.1\|1258884_1259244_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250253.1\|1259247_1259754_-	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	5.7e-95	100.0
WP_006250251.1\|1260322_1260559_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	2.1e-36	100.0
WP_006250250.1\|1260940_1261171_-	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	6.5e-38	100.0
WP_006250986.1\|1261462_1261738_+	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006253368.1\|1261746_1262052_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.6e-54	100.0
WP_015586954.1\|1262189_1263230_-\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	1.9e-201	100.0
WP_020824298.1\|1263339_1263837_-	hypothetical protein	A0A0M3LR76	Mannheimia_phage	2.4e-45	100.0
WP_006248823.1\|1263829_1264210_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_006250079.1\|1264260_1264920_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.2e-124	100.0
WP_006250080.1\|1265049_1265256_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	4.8e-32	100.0
WP_006253537.1\|1265276_1265537_+	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	3.3e-38	100.0
WP_006250084.1\|1265845_1266715_+	replication protein	A0A0M3LQL8	Mannheimia_phage	1.8e-165	100.0
WP_006250085.1\|1266711_1268073_+	DNA helicase	A0A0M3LQC0	Mannheimia_phage	7.1e-257	100.0
WP_006250086.1\|1268069_1268606_+	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	2.2e-105	100.0
WP_006250088.1\|1268696_1268912_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	7.2e-39	100.0
WP_006250089.1\|1268895_1269402_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	7.7e-92	100.0
WP_006250090.1\|1269451_1269664_+	hypothetical protein	A0A0M3LQX8	Mannheimia_phage	8.3e-32	100.0
WP_006250091.1\|1269709_1269904_+	hypothetical protein	A0A0M3LSN2	Mannheimia_phage	4.6e-29	100.0
WP_006250093.1\|1270031_1270601_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	3.2e-102	100.0
WP_006250094.1\|1270590_1271064_+	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	1.6e-83	100.0
WP_006251707.1\|1271383_1271569_+	hypothetical protein	A0A0M3LQD0	Mannheimia_phage	5.2e-30	100.0
WP_006250098.1\|1271907_1272153_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	3.1e-38	100.0
WP_006250099.1\|1272145_1272715_+	lysozyme	A0A0M3LQY4	Mannheimia_phage	1.5e-107	100.0
WP_006250100.1\|1272687_1273038_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	1.1e-28	100.0
WP_006250104.1\|1273607_1274132_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	1.7e-89	100.0
WP_015484276.1\|1274115_1275336_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LQ32	Mannheimia_phage	8.3e-241	100.0
WP_006251233.1\|1275332_1276709_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	4.3e-262	100.0
WP_015587047.1\|1276662_1277601_+	hypothetical protein	A0A0M3LQH2	Mannheimia_phage	2.6e-170	100.0
WP_015587048.1\|1277587_1278958_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	1.2e-243	100.0
WP_006251230.1\|1278950_1279385_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	8.7e-76	100.0
WP_006251229.1\|1279399_1280389_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	8.6e-188	100.0
WP_006251227.1\|1280672_1281050_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	7.3e-63	100.0
WP_006251226.1\|1281049_1281394_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.2e-61	100.0
WP_006251225.1\|1281395_1281764_+	hypothetical protein	A0A0M3LSU9	Mannheimia_phage	4.8e-59	100.0
WP_006251224.1\|1281760_1282141_+	hypothetical protein	A0A0M3LTB0	Mannheimia_phage	7.1e-66	100.0
WP_006251223.1\|1282144_1282627_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.3e-85	100.0
WP_006251222.1\|1282666_1283083_-	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	4.3e-72	100.0
WP_006251221.1\|1283138_1283315_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.3e-26	100.0
WP_006251220.1\|1283410_1284082_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	2.8e-121	100.0
WP_020824316.1\|1284096_1284330_-	hypothetical protein	A0A0M3LQZ8	Mannheimia_phage	7.0e-40	100.0
WP_006251218.1\|1284498_1284957_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	1.2e-78	100.0
WP_006251216.1\|1285501_1287997_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	0.0e+00	100.0
WP_006251215.1\|1288000_1288330_+\|tail	phage tail protein	A0A0M3LSV3	Mannheimia_phage	1.4e-57	100.0
WP_006251214.1\|1288329_1288800_+\|tail	phage minor tail protein L	A0A0M3LTB9	Mannheimia_phage	4.2e-84	100.0
WP_006251213.1\|1288807_1289524_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	4.2e-136	100.0
WP_147010038.1\|1289527_1290259_+\|tail	phage tail protein	A0A0M3LQI5	Mannheimia_phage	4.6e-146	98.8
WP_006249176.1\|1290527_1291157_+\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	1.0e-109	100.0
WP_147010039.1\|1291166_1297889_+	DUF1983 domain-containing protein	A0A0M3LQG1	Mannheimia_phage	0.0e+00	99.7
WP_100067196.1\|1297888_1298332_+	hypothetical protein	A0A0M3LS02	Mannheimia_phage	4.7e-77	99.3
WP_006250517.1\|1298332_1298932_+	hypothetical protein	A0A0M3LR33	Mannheimia_phage	7.5e-110	100.0
WP_015484180.1\|1299046_1299340_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	1.2e-47	100.0
WP_006249172.1\|1299886_1300405_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.7e-95	100.0
WP_015484183.1\|1300474_1301065_-	hypothetical protein	A0A0M3LPE1	Mannheimia_phage	3.7e-101	100.0
WP_006249380.1\|1301484_1303032_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_006249381.1\|1303028_1303628_+	hypothetical protein	NA	NA	NA	NA
WP_006249382.1\|1303639_1304458_+	PHP domain-containing protein	NA	NA	NA	NA
WP_015484184.1\|1304493_1304766_-	hypothetical protein	NA	NA	NA	NA
WP_015484185.1\|1304762_1305113_-	hypothetical protein	NA	NA	NA	NA
WP_006253556.1\|1305123_1306317_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_080628642.1\|1306330_1307176_-	EfeM/EfeO family lipoprotein	NA	NA	NA	NA
WP_006249376.1\|1307338_1307575_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_006249374.1\|1307813_1309832_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_006249373.1\|1309834_1310245_+	hypothetical protein	NA	NA	NA	NA
WP_006249372.1\|1310465_1311554_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_015484189.1\|1311572_1312538_-	asparaginase	NA	NA	NA	NA
WP_006249370.1\|1312552_1313050_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_006249369.1\|1313223_1313868_+	stringent starvation protein A	NA	NA	NA	NA
WP_006251052.1\|1313867_1314275_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.7e-20	40.7
WP_006249035.1\|1314471_1315431_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006249034.1\|1315510_1315771_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_006249033.1\|1315820_1316711_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006249032.1\|1316840_1319447_+	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	3.1e-91	37.0
WP_006249031.1\|1319496_1320435_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	6.6e-28	28.6
WP_006249030.1\|1320448_1321525_-	AI-2E family transporter	NA	NA	NA	NA
WP_006249029.1\|1321555_1322311_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006249028.1\|1322462_1322672_+	alternative ribosome-rescue factor A	NA	NA	NA	NA
WP_006249027.1\|1322720_1323443_-	dethiobiotin synthase	NA	NA	NA	NA
WP_006249026.1\|1323490_1324678_-	ROK family protein	NA	NA	NA	NA
WP_006249025.1\|1324811_1325930_+	ribonuclease D	NA	NA	NA	NA
WP_006249024.1\|1325986_1326469_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_006249023.1\|1326479_1329140_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	1.6e-79	44.0
WP_006249022.1\|1329291_1330131_+	membrane protein	A0A1I9SA48	Rhodococcus_phage	1.3e-35	37.0
WP_006249021.1\|1330219_1331302_+	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	6.5e-80	46.7
WP_006249020.1\|1331388_1332081_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_5

1508307 : 1551367

Mannheimia_phage(92.31%)

terminase,integrase,capsid,tRNA,head,holin,plate,tail,portal

attL 1505387:1505403|attR 1530911:1530927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1505387:1505403	attL	NA	NA	NA	NA
WP_006248143.1\|1508307_1510935_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	4.6e-79	37.1
WP_006248145.1\|1511129_1511555_-	universal stress protein	NA	NA	NA	NA
WP_006251533.1\|1511785_1512559_+	FNR family transcription factor	NA	NA	NA	NA
WP_006248147.1\|1512702_1513494_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006248148.1\|1513546_1513843_-	hypothetical protein	A0A2R2X2B2	Escherichia_phage	2.1e-12	42.3
WP_006248149.1\|1513867_1514146_-	hypothetical protein	NA	NA	NA	NA
WP_006248151.1\|1514305_1516282_+	exoribonuclease II	NA	NA	NA	NA
WP_006248152.1\|1516373_1517174_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	4.0e-10	37.1
WP_006248153.1\|1517541_1518540_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	1.1e-185	100.0
WP_006248154.1\|1518817_1519000_+	hypothetical protein	Q19US2	Mannheimia_phage	2.7e-23	100.0
WP_006248155.1\|1519269_1519560_-	hypothetical protein	A0A0M3LQ35	Mannheimia_phage	3.2e-50	100.0
WP_006248156.1\|1519534_1519804_-	hypothetical protein	A0A0M3LQ12	Mannheimia_phage	1.1e-44	100.0
WP_006248157.1\|1519793_1520126_-	hypothetical protein	A0A0M3LNQ0	Mannheimia_phage	2.3e-60	100.0
WP_006248158.1\|1520136_1520589_-	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.7e-77	100.0
WP_006248159.1\|1520588_1520921_-	hypothetical protein	A0A0M3LPG9	Mannheimia_phage	2.5e-59	100.0
WP_006248160.1\|1520933_1523294_-	replication endonuclease	Q19US8	Mannheimia_phage	0.0e+00	100.0
WP_006248161.1\|1523290_1523623_-	hypothetical protein	Q19US9	Mannheimia_phage	1.6e-61	100.0
WP_006248162.1\|1523619_1523862_-	hypothetical protein	Q19UT0	Mannheimia_phage	9.5e-40	100.0
WP_006248164.1\|1524013_1524307_-	hypothetical protein	Q19UT1	Mannheimia_phage	4.1e-53	100.0
WP_006248165.1\|1524319_1524652_-	hypothetical protein	Q19UT2	Mannheimia_phage	4.8e-50	100.0
WP_006248166.1\|1524734_1525007_-	hypothetical protein	Q19UN6	Mannheimia_phage	4.5e-46	100.0
WP_006253660.1\|1525139_1525385_+	hypothetical protein	A0A0M3LNP3	Mannheimia_phage	3.8e-36	100.0
WP_006248168.1\|1525483_1525696_-	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	4.9e-32	100.0
WP_147010041.1\|1525819_1526506_+	helix-turn-helix domain-containing protein	A0A0M3LPF9	Mannheimia_phage	1.2e-127	99.6
WP_006248170.1\|1526509_1527028_+	hypothetical protein	Q19UP0	Mannheimia_phage	2.5e-93	100.0
WP_006253662.1\|1527045_1527456_+	hypothetical protein	A0A0M3LP57	Mannheimia_phage	5.5e-72	100.0
WP_006248172.1\|1527555_1527816_+	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	2.2e-34	100.0
WP_006248173.1\|1527850_1528657_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	2.3e-154	100.0
WP_006248174.1\|1528839_1530078_-	phage late control D family protein	Q19UP4	Mannheimia_phage	7.7e-218	100.0
WP_006248175.1\|1530077_1530515_-\|tail	phage tail protein	Q19UP5	Mannheimia_phage	2.5e-75	100.0
WP_006253663.1\|1530516_1530864_-	hypothetical protein	R9QBV4	Mannheimia_phage	4.0e-55	100.0
WP_075270712.1\|1530927_1531044_-\|tail	GpE family phage tail protein	R9QCM4	Mannheimia_phage	5.0e-15	97.4
1530911:1530927	attR	NA	NA	NA	NA
WP_006248177.1\|1531067_1531382_-\|tail	phage tail assembly protein	Q19UP7	Mannheimia_phage	3.8e-49	100.0
WP_006248178.1\|1531460_1531967_-\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	1.7e-91	100.0
WP_006248179.1\|1531975_1533157_-\|tail	phage tail sheath protein	Q19UP9	Mannheimia_phage	5.2e-224	100.0
WP_147010042.1\|1533455_1533641_-	hypothetical protein	NA	NA	NA	NA
WP_006248181.1\|1533594_1533837_-	hypothetical protein	Q19UQ2	Mannheimia_phage	1.7e-44	100.0
WP_015981653.1\|1533837_1536117_-\|tail	variable tail fiber protein H	Q19UW4	Mannheimia_virus	0.0e+00	100.0
WP_147009206.1\|1536119_1536665_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	7.8e-98	98.9
WP_006248186.1\|1536651_1537569_-\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	6.2e-164	100.0
WP_006248187.1\|1537565_1537901_-	hypothetical protein	Q19UQ6	Mannheimia_phage	7.7e-56	100.0
WP_006248188.1\|1537900_1538506_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	9.3e-84	100.0
WP_006250779.1\|1538634_1538922_-	type II toxin-antitoxin system RelE/ParE family toxin	Q19UQ8	Mannheimia_phage	1.6e-46	100.0
WP_006248190.1\|1539155_1542068_-	hypothetical protein	Q19UR0	Mannheimia_phage	0.0e+00	100.0
WP_006248191.1\|1542106_1542385_+	hypothetical protein	Q19UR1	Mannheimia_phage	2.6e-33	100.0
WP_006248192.1\|1542435_1542894_-	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	2.0e-78	100.0
WP_006248193.1\|1542886_1543372_-\|tail	phage tail protein	Q19UR3	Mannheimia_phage	1.5e-89	100.0
WP_006248194.1\|1543368_1543590_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.4e-36	100.0
WP_006248210.1\|1543738_1544194_-	hypothetical protein	A0A0M3LQV2	Mannheimia_phage	1.4e-71	100.0
WP_006250773.1\|1544190_1544757_-	lysozyme	Q19UR6	Mannheimia_phage	2.3e-105	100.0
WP_006250772.1\|1544749_1544956_-\|holin	holin	Q19UR7	Mannheimia_phage	7.6e-30	100.0
WP_006250771.1\|1544961_1545174_-\|tail	tail protein	A0A0M3LPY0	Mannheimia_phage	2.0e-33	100.0
WP_006248195.1\|1545170_1545686_-\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	3.3e-90	100.0
WP_006250770.1\|1545797_1546487_-\|terminase	terminase endonuclease subunit	Q19US0	Mannheimia_phage	2.2e-121	100.0
WP_006248197.1\|1546496_1547525_-\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	2.7e-192	100.0
WP_006248198.1\|1547538_1548366_-\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	4.7e-139	100.0
WP_006250768.1\|1548479_1550318_+\|terminase	terminase ATPase subunit family protein	R9QCL2	Mannheimia_phage	0.0e+00	100.0
WP_006248200.1\|1550326_1551367_+\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.4e-199	100.0

DBSCAN-SWA_6

1588327 : 1598722

Mannheimia_phage(66.67%)

transposase,integrase

attL 1589909:1589925|attR 1608590:1608606

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006247813.1\|1588327_1591186_-	DNA polymerase I	A0A218MKQ4	uncultured_virus	8.0e-69	30.6
1589909:1589925	attL	NA	NA	NA	NA
WP_006247812.1\|1591470_1591764_-	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_015484247.1\|1591907_1592297_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006247810.1\|1592268_1592568_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_006247808.1\|1592744_1593431_-	hypothetical protein	NA	NA	NA	NA
WP_006248825.1\|1593832_1594033_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006248824.1\|1594163_1594847_+	hypothetical protein	K7PKK1	Enterobacteria_phage	2.8e-20	31.6
WP_006248823.1\|1594921_1595302_+	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_006250077.1\|1595294_1595792_+	hypothetical protein	A0A0M3LR76	Mannheimia_phage	1.6e-44	97.9
WP_006250075.1\|1595923_1596106_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.6e-07	51.7
WP_006250074.1\|1596144_1596564_+	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-27	50.4
WP_006253274.1\|1596899_1597544_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	1.2e-97	83.6
WP_147010043.1\|1597681_1598722_+\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	9.4e-201	99.4
1608590:1608606	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1608650 : 1728134

114

Mannheimia_phage(43.1%)

terminase,integrase,transposase,tRNA,holin,tail,portal

attL 1637555:1637614|attR 1737701:1737832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006248119.1\|1608650_1610153_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	1.3e-86	38.7
WP_006248118.1\|1610306_1611782_-	ribonuclease G	NA	NA	NA	NA
WP_006248114.1\|1613189_1613483_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_006248113.1\|1613549_1614563_-	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_134916814.1\|1614665_1614959_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_006248111.1\|1614959_1615880_-	hypothetical protein	NA	NA	NA	NA
WP_006253509.1\|1615906_1616581_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_006248109.1\|1616580_1617444_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_031192850.1\|1617453_1619235_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_006248107.1\|1619278_1619956_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_134983790.1\|1621938_1622400_-	hypothetical protein	NA	NA	NA	NA
WP_006253506.1\|1622558_1623695_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	4.2e-122	57.5
WP_006253505.1\|1623741_1624158_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_006248103.1\|1624219_1624813_-	hypothetical protein	NA	NA	NA	NA
WP_006248102.1\|1624943_1627232_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_006253504.1\|1627495_1629259_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_006248100.1\|1629355_1630318_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_006248099.1\|1630370_1632803_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	A0A172JHT4	Bacillus_phage	6.6e-104	32.1
WP_006248098.1\|1632934_1635571_-	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	4.3e-141	35.9
WP_006250663.1\|1635580_1637413_-	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	4.9e-152	48.4
1637555:1637614	attL	NA	NA	NA	NA
WP_006248097.1\|1637885_1638761_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_006248096.1\|1638753_1639515_-	DeoR/GlpR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.2e-19	29.2
WP_006248095.1\|1639581_1640949_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.1e-111	46.4
WP_006248094.1\|1640982_1641612_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_006248093.1\|1641743_1643408_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.8e-21	25.2
WP_006248092.1\|1643407_1645174_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	9.2e-23	24.3
WP_006253502.1\|1645288_1649386_-	translocation/assembly module TamB	NA	NA	NA	NA
WP_147008908.1\|1649466_1651302_-	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_006248088.1\|1651313_1652159_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_006248087.1\|1652159_1653323_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_006248086.1\|1653490_1654174_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_006248085.1\|1654310_1654868_-	ribosome recycling factor	NA	NA	NA	NA
WP_006248084.1\|1654919_1655636_-	UMP kinase	NA	NA	NA	NA
WP_006248083.1\|1655727_1657290_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_006248082.1\|1657353_1658205_-	elongation factor Ts	NA	NA	NA	NA
WP_006253501.1\|1658300_1659020_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_006253500.1\|1659364_1660393_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006248079.1\|1660515_1662162_+	iron ABC transporter permease	NA	NA	NA	NA
WP_006248078.1\|1662171_1663182_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-27	33.0
WP_006248077.1\|1663191_1663818_+	DsbA family oxidoreductase	NA	NA	NA	NA
WP_006248076.1\|1663879_1665370_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	6.2e-81	45.0
WP_006248075.1\|1665428_1666664_-	ATP-dependent RNA helicase RhlB	E3T5E1	Cafeteria_roenbergensis_virus	1.9e-38	29.2
WP_006248074.1\|1666751_1667474_-	DNA repair protein RecO	NA	NA	NA	NA
WP_006248073.1\|1667703_1668621_-	GTPase Era	NA	NA	NA	NA
WP_006248072.1\|1668723_1669398_-	ribonuclease III	M4QMG4	Micromonas_pusilla_virus	7.8e-23	35.0
WP_006248071.1\|1669443_1670403_-	signal peptidase I	NA	NA	NA	NA
WP_006253499.1\|1670489_1672283_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	1.1e-23	42.6
WP_006248069.1\|1672555_1673785_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_006253498.1\|1673978_1676210_+	collagen-binding protein	NA	NA	NA	NA
WP_147010044.1\|1677354_1678287_-\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	4.6e-167	97.0
WP_006252769.1\|1678528_1678969_+	DoxX family protein	NA	NA	NA	NA
WP_006248065.1\|1678994_1679282_+	hypothetical protein	NA	NA	NA	NA
WP_006248064.1\|1679382_1680306_+	DUF692 family protein	NA	NA	NA	NA
WP_006248063.1\|1680295_1681036_+	hypothetical protein	NA	NA	NA	NA
WP_006248062.1\|1681836_1682007_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_006247812.1\|1682274_1682568_-	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_006249176.1\|1689751_1690381_-\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	1.0e-109	100.0
WP_147010038.1\|1690649_1691381_-\|tail	phage tail protein	A0A0M3LQI5	Mannheimia_phage	4.6e-146	98.8
WP_006249178.1\|1691384_1692101_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.3e-134	98.3
WP_006249179.1\|1692100_1692430_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	4.1e-17	38.9
WP_006249180.1\|1692429_1695996_-	tape measure protein	A0A125RN77	Pseudomonas_phage	2.3e-33	34.3
WP_006249181.1\|1696049_1696277_-	hypothetical protein	NA	NA	NA	NA
WP_006249183.1\|1696339_1696570_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_006249184.1\|1696614_1697016_-	hypothetical protein	NA	NA	NA	NA
WP_006249185.1\|1697099_1697741_-	hypothetical protein	NA	NA	NA	NA
WP_006249186.1\|1697768_1698164_-\|tail	phage tail protein	NA	NA	NA	NA
WP_006249187.1\|1698160_1698685_-\|tail	tail protein	M9NZH5	Enterobacteria_phage	1.9e-16	37.0
WP_006249188.1\|1698688_1698991_-\|tail	phage tail protein	NA	NA	NA	NA
WP_006249189.1\|1698983_1699307_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	4.9e-15	38.3
WP_006249190.1\|1699380_1701342_-	peptidase S14	A0A1W6JT88	Pseudomonas_phage	3.3e-199	55.0
WP_006249191.1\|1701353_1702853_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	4.4e-159	56.8
WP_006249192.1\|1702852_1703077_-	hypothetical protein	NA	NA	NA	NA
WP_006249193.1\|1703073_1705185_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	2.0e-274	67.7
WP_006249194.1\|1705184_1705661_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	9.3e-39	54.7
WP_006249195.1\|1705808_1706207_-	hypothetical protein	NA	NA	NA	NA
WP_147010045.1\|1706342_1706576_-	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	3.5e-31	85.1
WP_006249197.1\|1706520_1706871_-	DUF2570 domain-containing protein	A0A0M3LPB1	Mannheimia_phage	1.5e-22	88.8
WP_015484172.1\|1706871_1707468_-	glycoside hydrolase family 19 protein	A0A0M3LPP0	Mannheimia_phage	4.1e-92	84.7
WP_006249199.1\|1707457_1707805_-\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	2.5e-49	89.9
WP_015587037.1\|1707968_1708775_-	nitrate ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_015484169.1\|1708854_1709214_-	hypothetical protein	NA	NA	NA	NA
WP_006249418.1\|1709203_1709563_-	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	2.3e-13	33.9
WP_015587038.1\|1709555_1710584_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.8e-48	33.9
WP_015484167.1\|1710653_1711226_-	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	3.1e-105	96.8
WP_006249422.1\|1711222_1711858_-	bacteriophage replication protein	A0A0M3LS65	Mannheimia_phage	1.5e-55	56.3
WP_006249423.1\|1711845_1712637_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	7.7e-30	76.1
WP_006249424.1\|1712633_1713395_-	hypothetical protein	A0A2I7R415	Vibrio_phage	6.5e-26	33.3
WP_006249425.1\|1713443_1713668_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	2.6e-15	65.6
WP_006249426.1\|1713794_1714526_+	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	7.4e-43	39.8
WP_006249427.1\|1714530_1715034_+	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_015484164.1\|1715030_1716143_+	hypothetical protein	NA	NA	NA	NA
WP_015484163.1\|1716406_1716637_+	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	2.5e-37	98.7
WP_006248786.1\|1717089_1717341_+	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	1.7e-31	85.2
WP_006248787.1\|1717343_1717619_-	hypothetical protein	A0A1J0MFQ1	Staphylococcus_phage	1.2e-06	30.4
WP_006248788.1\|1717832_1718018_+	hypothetical protein	NA	NA	NA	NA
WP_006248789.1\|1718001_1718199_+	hypothetical protein	NA	NA	NA	NA
WP_006248790.1\|1718201_1718660_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	6.0e-35	48.0
WP_006248791.1\|1718695_1719055_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	3.6e-19	51.5
WP_006248792.1\|1719124_1719928_+	YfdQ family protein	I3PUY7	Vibrio_phage	1.1e-50	40.1
WP_006248793.1\|1720037_1720556_+	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.4e-77	82.3
WP_006248794.1\|1720552_1720753_+	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.9e-17	67.2
WP_006248795.1\|1720736_1721234_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	3.5e-28	45.9
WP_015484162.1\|1721237_1721426_-	hypothetical protein	A0A0M3LPW7	Mannheimia_phage	5.0e-28	93.5
WP_006248797.1\|1721557_1721935_-	hypothetical protein	NA	NA	NA	NA
WP_006248800.1\|1722164_1723004_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.6e-73	52.9
WP_006248801.1\|1723251_1723929_+	phage repressor protein/antirepressor Ant	A0A0M3LQ72	Mannheimia_phage	2.0e-58	91.3
WP_006248804.1\|1724167_1724605_+	hypothetical protein	Q19US5	Mannheimia_phage	4.7e-05	38.5
WP_006248805.1\|1724597_1724891_+	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	1.1e-05	37.9
WP_006248806.1\|1724893_1725103_+	hypothetical protein	NA	NA	NA	NA
WP_006248807.1\|1725249_1725375_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_006248808.1\|1725421_1726264_+	hypothetical protein	F6MIM2	Haemophilus_phage	4.0e-109	67.3
WP_006248809.1\|1726326_1726818_+	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	1.1e-95	96.9
WP_006248810.1\|1726843_1727119_+	DUF4224 domain-containing protein	A0A0M3LNT7	Mannheimia_phage	4.5e-46	98.9
WP_006248811.1\|1727078_1728134_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	1.0e-199	99.7
1737701:1737832	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1801999 : 1812316

Mannheimia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249218.1\|1801999_1802974_-	single-stranded DNA-binding protein	A0A1S5NNJ1	Burkholderia_phage	8.9e-36	44.6
WP_006249219.1\|1802976_1803174_-	hypothetical protein	NA	NA	NA	NA
WP_006249220.1\|1803157_1803343_-	hypothetical protein	NA	NA	NA	NA
WP_006253352.1\|1803988_1804585_+	hypothetical protein	NA	NA	NA	NA
WP_006247789.1\|1804620_1805358_-	hypothetical protein	NA	NA	NA	NA
WP_006247790.1\|1805509_1805884_-	hypothetical protein	NA	NA	NA	NA
WP_006247791.1\|1805895_1806552_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	4.1e-37	42.5
WP_006247792.1\|1806676_1806865_+	hypothetical protein	A5VW97	Enterobacteria_phage	1.3e-12	62.1
WP_006247793.1\|1806922_1807606_+	hypothetical protein	A0A2I7RHG4	Vibrio_phage	4.7e-52	51.3
WP_006247794.1\|1807602_1808649_+	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-23	52.6
WP_006247795.1\|1808659_1809253_+	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	8.8e-87	75.5
WP_006253316.1\|1811362_1811686_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006253314.1\|1811766_1811934_-	DNA cytosine methyltransferase	A0A0M3LNT4	Mannheimia_phage	4.4e-20	76.8
WP_006247798.1\|1811941_1812316_-	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	1.1e-66	98.4

DBSCAN-SWA_9

2255730 : 2263885

Synechococcus_phage(16.67%)

terminase,integrase

attL 2258936:2258995|attR 2264301:2264374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006250276.1\|2255730_2256270_+	HAD-IIIA family hydrolase	A0A222YVZ6	Synechococcus_phage	3.1e-06	34.8
WP_006250894.1\|2256407_2256698_+	BrnT family toxin	NA	NA	NA	NA
WP_006250278.1\|2256669_2256972_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	3.5e-07	38.7
WP_006253765.1\|2256989_2257283_-	DUF3144 domain-containing protein	NA	NA	NA	NA
WP_015484067.1\|2257233_2257446_-	hypothetical protein	NA	NA	NA	NA
WP_006250280.1\|2257448_2258408_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	5.1e-44	40.2
2258936:2258995	attL	NA	NA	NA	NA
WP_006250282.1\|2259214_2260441_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	4.3e-80	39.9
WP_006253767.1\|2260715_2260934_+	addiction module killer protein	NA	NA	NA	NA
WP_006250284.1\|2261046_2261370_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.0e-12	43.5
WP_006250286.1\|2261764_2262451_+	hypothetical protein	NA	NA	NA	NA
WP_006250289.1\|2262770_2263196_+	hypothetical protein	NA	NA	NA	NA
WP_006250290.1\|2263192_2263885_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	7.5e-29	58.8
2264301:2264374	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP017540.1|WP_147010042.1|1533455_1533641_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP017540.1|WP_147010042.1|1533455_1533641_-|hypothetical-protein

1533455_1533641_-

61 aa aa

1508307-1551367

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP017540_4	TypeI	4.13\|1612797\|37\|NZ_CP017540\|CRT,PILER-CR	1612797-1612833	37	1533050-1533086
NZ_CP017540_4	TypeI	4.25\|1612665\|34\|NZ_CP017540\|CRISPRCasFinder	1612665-1612698	34	1533402-1533435
NZ_CP017540_4	TypeI	4.26\|1612731\|35\|NZ_CP017540\|CRISPRCasFinder	1612731-1612765	35	1533712-1533746
NZ_CP017540_4	TypeI	4.27\|1612798\|36\|NZ_CP017540\|CRISPRCasFinder	1612798-1612833	36	1533051-1533086

1. spacer 4.13|1612797|37|NZ_CP017540|CRT,PILER-CR matches to NZ_CP017540 position: 1533050-1533086, mismatch: 0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 4.25|1612665|34|NZ_CP017540|CRISPRCasFinder matches to NZ_CP017540 position: 1533402-1533435, mismatch: 0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

3. spacer 4.26|1612731|35|NZ_CP017540|CRISPRCasFinder matches to NZ_CP017540 position: 1533712-1533746, mismatch: 0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

4. spacer 4.27|1612798|36|NZ_CP017540|CRISPRCasFinder matches to NZ_CP017540 position: 1533051-1533086, mismatch: 0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information