CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017541	Mannheimia haemolytica strain 1450, complete genome	4 crisprs	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,PD-DExK,RT	7	15	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017541_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017541_1

917289-917363

Orphan

Consensus_repeat	Method
CCTAGCGGTGGCAGGCACCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017541_1

>merge|NZ_CP017541|1|917289-917363|CRISPRCasFinder
CCTAGCGGTGGCAGGCACCAGAAAGACCTGATACTAATCTAGGGTATAAAGACCTAGCGGTGGCAGACACCAGAA

>NZ_CP017541|1|1|917289-917363|CRISPRCasFinder
CCTAGCGGTGGCAGGCACCAGAA	AGACCTGATACTAATCTAGGGTATAAAGA
CCTAGCGGTGGCAGACACCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017541.1\|WP_006248318.1\|919691_923888_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP017541.1\|WP_006248311.1\|913684_914548_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248320.1\|925123_925393_+\|DUF1040-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP017541.1\|WP_006248316.1\|915930_917172_+\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP017541.1\|WP_006250513.1\|915727_915931_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP017541.1\|WP_006248305.1\|910630_911575_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP017541.1\|WP_006248321.1\|925456_926095_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|182863
NZ_CP017541.1\|WP_006248303.1\|909179_909641_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP017541.1\|WP_015587023.1\|927580_928621_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017541.1\|WP_096864247.1\|917575_918616_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017541.1\|WP_006248308.1\|912276_912762_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NZ_CP017541.1\|WP_006248319.1\|923942_925037_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|237727
NZ_CP017541.1\|WP_006248307.1\|911667_912213_+\|endonuclease-SmrB	unknown	unknown	gnl\|CDD\|235321
NZ_CP017541.1\|WP_006252258.1\|918769_919543_-\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|223748
NZ_CP017541.1\|WP_006248313.1\|914671_915265_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006251360.1\|909653_910547_+\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP017541.1\|WP_006248309.1\|912763_913513_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP017541.1\|WP_015484369.1\|926964_927219_+\|luciferase	unknown	unknown	gnl\|CDD\|274646
NZ_CP017541.1\|WP_015484370.1\|926178_926955_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP017541.1\|WP_006252261.1\|927220_927514_+\|YfcZ/YiiS-family-protein	unknown	unknown	gnl\|CDD\|367851

Protein	Function_ID	Function_description	E-value
NZ_CP017541.1\|WP_006248309.1\|912763_913513_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.14593e-11
NZ_CP017541.1\|WP_015484369.1\|926964_927219_+\|luciferase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	3.54605e-12
NZ_CP017541.1\|WP_006248320.1\|925123_925393_+\|DUF1040-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	8.73032e-44
NZ_CP017541.1\|WP_006248316.1\|915930_917172_+\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	8.01844e-62
NZ_CP017541.1\|WP_006250513.1\|915727_915931_+\|hypothetical-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	0.00480946
NZ_CP017541.1\|WP_006248305.1\|910630_911575_-\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP017541.1\|WP_006248321.1\|925456_926095_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	7.23879e-76
NZ_CP017541.1\|WP_006248303.1\|909179_909641_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	4.22169e-09
NZ_CP017541.1\|WP_015587023.1\|927580_928621_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.16175e-24
NZ_CP017541.1\|WP_006252258.1\|918769_919543_-\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|223748	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism].	2.73894e-101
NZ_CP017541.1\|WP_006248308.1\|912276_912762_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.45719e-68
NZ_CP017541.1\|WP_006248319.1\|923942_925037_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|237727	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional.	0
NZ_CP017541.1\|WP_006248307.1\|911667_912213_+\|endonuclease-SmrB	gnl\|CDD\|235321	PRK04946, PRK04946, endonuclease SmrB.	3.04874e-103
NZ_CP017541.1\|WP_096864247.1\|917575_918616_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.45193e-24
NZ_CP017541.1\|WP_006251360.1\|909653_910547_+\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	0
NZ_CP017541.1\|WP_006248318.1\|919691_923888_+\|autotransporter-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	0
NZ_CP017541.1\|WP_015484370.1\|926178_926955_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.54784e-136
NZ_CP017541.1\|WP_006252261.1\|927220_927514_+\|YfcZ/YiiS-family-protein	gnl\|CDD\|367851	pfam04175, DUF406, Protein of unknown function (DUF406). Members of this family appear to be found only in gamma proteobacteria. The function of this protein family is undetermined. Solution of the structures of the two members of this family investigated bear some resemblance to that of the single domain enzyme pterin-4a-carbinolamine dehydratase, PDC. Although the residues of PCDs involved in binding of metabolite are not conserved in the two structures under study, they do correspond to a surface-region structurally aligned with residues that are highly conserved, eg Glu 89, suggesting that this region is also involved in binding of a ligand, thereby possibly constituting a catalytic site of a yet uncharacterized enzyme specific for gamma proteobacteria.	7.66966e-31

>NZ_CP017541.1|WP_006248316.1|915930_917172_+|HipA-domain-containing-protein
MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWLSSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKPKLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLESSDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEYLAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYEASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPAYDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQNVAKEIGIPRQEQEQMKFAFNV
>NZ_CP017541.1|WP_006250513.1|915727_915931_+|hypothetical-protein
MFTQTLLAQRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLRK
>NZ_CP017541.1|WP_006248313.1|914671_915265_+|hypothetical-protein
MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDLVFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGYQADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQKEGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI
>NZ_CP017541.1|WP_006248311.1|913684_914548_+|hypothetical-protein
MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTFLLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLSLFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWVGYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGVLNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIAIVAIICLFYWR
>NZ_CP017541.1|WP_006248309.1|912763_913513_-|alpha/beta-fold-hydrolase
MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLKSNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKNLYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREILWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVIELLPIEGADHAFSNPKLMDIAIGKIVEFFAP
>NZ_CP017541.1|WP_006248308.1|912276_912762_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQGAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVFGAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAKS
>NZ_CP017541.1|WP_006248307.1|911667_912213_+|endonuclease-SmrB
MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELRELKEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTREKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWGGDASILILVEQPENPEKMFGR
>NZ_CP017541.1|WP_006248305.1|910630_911575_-|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGHGYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLTNSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAERFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPYVDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVHLIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA
>NZ_CP017541.1|WP_006251360.1|909653_910547_+|N-acetylmuramic-acid-6-phosphate-etherase
MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQCLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAGGERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGATTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIGKCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNLDKQKAEDLLSQNQGRLQKALK
>NZ_CP017541.1|WP_006248303.1|909179_909641_+|nuclear-transport-factor-2-family-protein
MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILDLNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLSTDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV
>NZ_CP017541.1|WP_096864247.1|917575_918616_-|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017541.1|WP_006252258.1|918769_919543_-|D-hexose-6-phosphate-mutarotase
MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNAEQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR
>NZ_CP017541.1|WP_006248318.1|919691_923888_+|autotransporter-domain-containing-protein
MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENKGPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGYKNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNAGTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPDHWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNRSAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSSIANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGAGIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQGRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKHARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLKGNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNGILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNKHDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTPSCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQADQTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKGNGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGNKASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTNVPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSRRLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLIKASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQSDKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEFNEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGANIGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLDDWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGFINGNEIKKQHFAGVKLGYSW
>NZ_CP017541.1|WP_006248319.1|923942_925037_-|molybdenum-cofactor-guanylyltransferase
MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILARLSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFVPCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQQQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLLEKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTETKQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATDYPLERENWLDINNIGGIADFIKNWLENKAS
>NZ_CP017541.1|WP_006248320.1|925123_925393_+|DUF1040-family-protein
MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKALSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND
>NZ_CP017541.1|WP_006248321.1|925456_926095_+|thioredoxin-domain-containing-protein
MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQKEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWALAMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNKQVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK
>NZ_CP017541.1|WP_015484370.1|926178_926955_+|LLM-class-flavin-dependent-oxidoreductase
MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYILGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAIAAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV
>NZ_CP017541.1|WP_015484369.1|926964_927219_+|luciferase
MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQQLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV
>NZ_CP017541.1|WP_006252261.1|927220_927514_+|YfcZ/YiiS-family-protein
MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAVQAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR
>NZ_CP017541.1|WP_015587023.1|927580_928621_-|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKAAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN

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Crispr_ID: NZ_CP017541_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017541_2

966874-966952

Orphan

Consensus_repeat	Method
CCTTAAATATCCTAGATTAGTTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017541_2

>merge|NZ_CP017541|2|966874-966952|CRISPRCasFinder
CCTTAAATATCCTAGATTAGTTTCAAGTTTTTCTGATGCTTGCCATCTGCTAGACCTTAAATATCCTAGATTAGTTTCA

>NZ_CP017541|2|2|966874-966952|CRISPRCasFinder
CCTTAAATATCCTAGATTAGTTTCA	AGTTTTTCTGATGCTTGCCATCTGCTAGA
CCTTAAATATCCTAGATTAGTTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017541.1\|WP_006248329.1\|964508_964766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248322.1\|966199_966754_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376232
NZ_CP017541.1\|WP_006248364.1\|968973_969216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_015587023.1\|967801_968842_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017541.1\|WP_006248366.1\|969375_969633_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248333.1\|962489_962921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248326.1\|965263_965581_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP017541.1\|WP_006253298.1\|960078_960357_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274769
NZ_CP017541.1\|WP_006248372.1\|974154_975093_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|366360
NZ_CP017541.1\|WP_006248336.1\|958678_959110_-\|DUF3577-domain-containing-protein	unknown	unknown	gnl\|CDD\|371899
NZ_CP017541.1\|WP_006248367.1\|969644_970145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248334.1\|960383_962486_+\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274768
NZ_CP017541.1\|WP_032845458.1\|957668_958661_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|181888
NZ_CP017541.1\|WP_006248373.1\|975089_976415_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173874
NZ_CP017541.1\|WP_147008793.1\|970648_972622_+\|DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377859
NZ_CP017541.1\|WP_006248374.1\|976423_977701_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225265
NZ_CP017541.1\|WP_006248332.1\|962985_964074_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP017541.1\|WP_015587024.1\|967071_967803_-\|transposase	unknown	unknown	gnl\|CDD\|374806
NZ_CP017541.1\|WP_006248370.1\|972775_973540_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP017541.1\|WP_006248324.1\|965701_965932_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017541.1\|WP_006248373.1\|975089_976415_+\|hypothetical-protein	gnl\|CDD\|173874	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of a cellulose-binding protein from the hyperthermophilic bacterium Thermotoga maritima (TmCBP) and its closest related proteins. TmCBP binds a variety of lengths of beta-1,4-linked glucose oligomers, ranging from two sugar rings (cellobiose) to five (cellopentose). TmCBP is structurally homologous to domains I and III of the ATP-binding cassette (ABC)-type oligopeptide-binding proteins and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporters and chemotaxis systems. Members of the PBP2 superfamily function in uptake of a variety of metabolites in bacteria such as amino acids, carbohydrate, ions, and polyamines. Ligands are then transported across the cytoplasmic membrane energized by ATP hydrolysis or electrochemical ion gradient. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0.00180342
NZ_CP017541.1\|WP_006248322.1\|966199_966754_-\|hypothetical-protein	gnl\|CDD\|376232	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4. A predicted endoRNase of the Barnase-EndoU-ColicinE5/D-RelE like nuclease fold found in polyvalent proteins of phages and conjugative elements. The predicted active site contains a conserved histidine residue.	3.16015e-14
NZ_CP017541.1\|WP_015587023.1\|967801_968842_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.16175e-24
NZ_CP017541.1\|WP_015587024.1\|967071_967803_-\|transposase	gnl\|CDD\|374806	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid. RepB_primase is a DNA-primase produced by P4-like phages. It is a zinc-independent primase unlike Pri-type primases. It takes up a dumbbell shaped consisting of an N-terminal catalytic domain separated by a long alpha-helix plus tether and a C-terminal helical-bundle domain. Primases are necessary for phage replication. RepBprime primases such as in this family recognize both ssiA and ssiB, ie only 1 single-stranded primase initiation site on each strand, independently of each other and then synthesize primers that are elongated by DNA polymerase III. The phage is thus replicated exclusively in leading strand mode.	1.03593e-07
NZ_CP017541.1\|WP_006248326.1\|965263_965581_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	6.83223e-07
NZ_CP017541.1\|WP_006253298.1\|960078_960357_+\|hypothetical-protein	gnl\|CDD\|274769	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	3.08918e-11
NZ_CP017541.1\|WP_006248372.1\|974154_975093_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	3.95504e-38
NZ_CP017541.1\|WP_006248336.1\|958678_959110_-\|DUF3577-domain-containing-protein	gnl\|CDD\|371899	pfam12101, DUF3577, Protein of unknown function (DUF3577). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.	1.5487e-72
NZ_CP017541.1\|WP_006248334.1\|960383_962486_+\|integrating-conjugative-element-protein	gnl\|CDD\|274768	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	5.90252e-139
NZ_CP017541.1\|WP_032845458.1\|957668_958661_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|181888	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional.	0
NZ_CP017541.1\|WP_147008793.1\|970648_972622_+\|DNA-binding-domain-containing-protein	gnl\|CDD\|377859	pfam07514, TraI_2, Putative helicase. Some members of this family have been annotated as helicases.	1.87253e-161
NZ_CP017541.1\|WP_006248374.1\|976423_977701_+\|hypothetical-protein	gnl\|CDD\|225265	COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only].	1.37249e-14
NZ_CP017541.1\|WP_006248332.1\|962985_964074_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	8.96153e-28
NZ_CP017541.1\|WP_006248370.1\|972775_973540_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	3.89195e-28

>NZ_CP017541.1|WP_006248322.1|966199_966754_-|hypothetical-protein
MRKQAKLEKYIHLIEDAAKFFNSYFINKKVIYRTKTQEISIIFKRSNFMHLCGIKYTDGASEFFNAAISNNLDLAKMNVKSDGTTFLKLSLLNSVSFLLTPEMCLTEGGIYLNIRFDKSLKTKKQIFALTLINQNHVFIPNSLLNLKKMNDFPNGERVVSIKSIGLLTNEEIVFYGGCRRSDLI
>NZ_CP017541.1|WP_006248324.1|965701_965932_+|hypothetical-protein
MSLLKKAQTFISIFNEVRAKNEAQRQSSNNLNVALKNAAEMRAEMNGFSLKPQKRSTYFADHYGCGIHAVETYDNE
>NZ_CP017541.1|WP_006248326.1|965263_965581_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNTLDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSAFKA
>NZ_CP017541.1|WP_006248329.1|964508_964766_+|hypothetical-protein
MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLREQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF
>NZ_CP017541.1|WP_006248332.1|962985_964074_+|AAA-family-ATPase
MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDSQCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQTLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYILYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNGFNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCAIDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGHALNTMDESKENFDQEFQSLAERIIQLTN
>NZ_CP017541.1|WP_006248333.1|962489_962921_+|hypothetical-protein
MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNYVYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFEASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA
>NZ_CP017541.1|WP_006248334.1|960383_962486_+|integrating-conjugative-element-protein
MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGYRTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTCGNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGLYQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDKKDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLCTEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEAALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLLLIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAITQQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSDGSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWDVNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVWAKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVNARRRNQEADYIINAPKGN
>NZ_CP017541.1|WP_006253298.1|960078_960357_+|hypothetical-protein
MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFPHSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH
>NZ_CP017541.1|WP_006248336.1|958678_959110_-|DUF3577-domain-containing-protein
MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAALVGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDSKFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE
>NZ_CP017541.1|WP_032845458.1|957668_958661_-|ABC-transporter-ATP-binding-protein
MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVGESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPMTSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLGVVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGNPPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS
>NZ_CP017541.1|WP_015587024.1|967071_967803_-|transposase
MRVSFLFRLIFDTHILNGKLSLFRVNCQIKSDLLHLNTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLNKKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYKNNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYRKGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC
>NZ_CP017541.1|WP_015587023.1|967801_968842_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKAAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017541.1|WP_006248364.1|968973_969216_+|hypothetical-protein
MFNLNLFKRPIELSTLESWSKFCDDVGKVAFIAIPPMIYSNYDLCIKIGNISALLAITYGFLLSGRTIRQFIEKEKSRWD
>NZ_CP017541.1|WP_006248366.1|969375_969633_-|hypothetical-protein
MNNKQILSIAQKFRQNHKDSHPFMLERGYVRIYQGKAYGWCAEQEDANTECPTALIVSLSNEIFEATGGDDISGAEKWEKYNSNF
>NZ_CP017541.1|WP_006248367.1|969644_970145_-|hypothetical-protein
MNNHYIIGYVGDNLERYQYNKSQLKSIVLMHEEIKNIVDKGILNKVKKPMWFIFFPTSILLFIVMVKFNSLLSGIMLFLTMLIAYCNTKYWYFRTIRMKLSHFMELMPAKEIINNSETKNILVIIEKCTFMNQKDEHIVDLDSIATGLNIIIRYNKFNHQFSAYKQ
>NZ_CP017541.1|WP_147008793.1|970648_972622_+|DNA-binding-domain-containing-protein
MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQLLNTELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITLKDGSRWFAWNGQPPQPYKFKYIKGRDYHLHPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVTLAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGLWLVSKTAADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSGWTPATTFTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKISLLPSKQSEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQNISVISSNKEQQIVMTTLTEQEKVPPKKVKLEKSKKKNLQLTTLEPWNDMINPITGKEFVNWLKEGIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQPYDKETINNLQYDFQGLGLHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTHLLFGDKMLLNNHCLTLQEEDT
>NZ_CP017541.1|WP_006248370.1|972775_973540_+|site-specific-integrase
MLIEWRNQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSEQLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIYISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQPMSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLGYIEYDVEMLRDTVNLL
>NZ_CP017541.1|WP_006248372.1|974154_975093_+|ThiF-family-adenylyltransferase
MEGEYKLKADVTIYHDTPYTKVLFGSTYIEILDDDQYYFSILEKRRWKLENLPDELVDVLKEYNLFVKTYIHEYENTELEKNIYLIESLIDSKSHKTPIDIQKQLSSTKILLLGVGGIGCIVLDNLLRLGIRDFFIIDSDMVEVSNLNRQILFVKEDIGFYKVEIIKNKVLAMYDGVRVNYSTEYVDNVNYLSDICINYSPDFIVNALDTPRNIEGIIFDISKKLSIPSISCGVGVHSGFWGPIYPFAKYYEIEKEFRNLNVKPIKGSLPTTNMIIGSMVSHDIFKFFINPKDKNLYSRKFFNFQTYTCEVI
>NZ_CP017541.1|WP_006248373.1|975089_976415_+|hypothetical-protein
MKNYINILLDAEFNLHLPFECNDFSSRCIFSMMYEPLFNKNNAIYTTSSYVRNHYFNIEDFSITFEFVDEIFFSNGEKLTSTDIYKTLYYQISHKTMFSSYLDFIEGVSEFLYDGKLNVEFGIYDIPERNMLVIKCNREVDYCDIFSNIEFSPVYFDDNGKPDIYISNGQFNLFVVKDYLVTLKRNKYVSSITNKNIMFVRFIVNNNLYYPIKLFHDGYIDVTSCTYFPNELVKYENIACKDSNIYFLLGFKEEFIQFKSIFFDIINNYINNNLSDILSPVRGYFLDNEIIYDFRAKKINKINFKKLKIAYLDYYPNKNIICVLSEYLLSMGFEVELYGFDIKSYCNLDKSIYDIYLTLSVMLTESKYDLSIYYISYLLDKDIDGFLDIINSDNSNEDYKKQSEYLLSHALCLPICRGKFIYLKSKYADNFHVNDKGLFNL
>NZ_CP017541.1|WP_006248374.1|976423_977701_+|hypothetical-protein
MISFNLDFSSEKCALVCSNFGISSRHRNIFNLNDLDPNNLGFDINNGITLITGHSGVGKSTIGEVLRERYSFFDIKDIIISDVNSPIIDIIDADFKDSIYFLNIAGLSEPYLYLTSYKNLSSGQKFRFMIALMISKGVKKIYCDEFCSDLDRSTAYFLSYNLRRFSTKLGVSFIFISNDKNIKDYLFPDNYLSFDLYSNISINKSVDLIENPFKKHLVVKEASYEDYCLLEKYHYFPSAEESINLSYNAKYYTLEYKEDVVGGLIIRDPYSNEEENDSLLNINNKIKVLYRVILHPLVRGCGILRFFLDNIYTIYSGKILYVESALARFVPIFESMGWVSLDESKFFYKKGLLLESENINYLLNCLGDMIYNKYIDFCTISNIKSSINKDEIIDSLKSEFNEEDTDFIRECLELYDMKRFIYEIK

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Crispr_ID: NZ_CP017541_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017541_3

1357385-1357499

Orphan

Consensus_repeat	Method
ACAGTGGCGAAATTATTACGATTTATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017541_3

>merge|NZ_CP017541|3|1357385-1357499|CRISPRCasFinder
ACAGTGGCGAAATTATTACGATTTATCCACCTAAAAAGCTCCCTGTTATTGTCATTAAAAGCAAAATGGATTTATTTAGTGCAACAAACAGTGGCGAAATTATTACGATTTATCC

>NZ_CP017541|3|3|1357385-1357499|CRISPRCasFinder
ACAGTGGCGAAATTATTACGATTTATCC	ACCTAAAAAGCTCCCTGTTATTGTCATTAAAAGCAAAATGGATTTATTTAGTGCAACAA
ACAGTGGCGAAATTATTACGATTTATCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017541.1\|WP_006248181.1\|1359794_1360037_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377774
NZ_CP017541.1\|WP_020910232.1\|1353718_1354759_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017541.1\|WP_006248179.1\|1360438_1361620_+\|phage-tail-sheath-protein	unknown	unknown	gnl\|CDD\|164955
NZ_CP017541.1\|WP_021265529.1\|1353414_1353684_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NZ_CP017541.1\|WP_006248186.1\|1355975_1356893_+\|baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|164963
NZ_CP017541.1\|WP_062716029.1\|1349442_1349901_+\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_CP017541.1\|WP_006253663.1\|1362731_1363079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248188.1\|1355038_1355644_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_CP017541.1\|WP_006248191.1\|1349951_1350230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_015981653.1\|1357514_1359794_+\|variable-tail-fiber-protein-H	unknown	unknown	gnl\|CDD\|372197
NZ_CP017541.1\|WP_006248187.1\|1355643_1355979_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|134016
NZ_CP017541.1\|WP_075270712.1\|1362551_1362668_+\|GpE-family-phage-tail-protein	unknown	unknown	gnl\|CDD\|368955
NZ_CP017541.1\|WP_006248178.1\|1361628_1362135_+\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|164995
NZ_CP017541.1\|WP_006250778.1\|1353242_1353422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248193.1\|1348964_1349450_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|369126
NZ_CP017541.1\|WP_006248194.1\|1348746_1348968_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
NZ_CP017541.1\|WP_006248177.1\|1362213_1362528_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP017541.1\|WP_006248174.1\|1363517_1364756_+\|phage-late-control-D-family-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP017541.1\|WP_006248173.1\|1364938_1365745_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248175.1\|1363080_1363518_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754

Protein	Function_ID	Function_description	E-value
NZ_CP017541.1\|WP_006248181.1\|1359794_1360037_+\|hypothetical-protein	gnl\|CDD\|377774	pfam07087, DUF1353, Protein of unknown function (DUF1353). This family consists of several hypothetical bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.08055e-05
NZ_CP017541.1\|WP_020910232.1\|1353718_1354759_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.23372e-24
NZ_CP017541.1\|WP_006248179.1\|1360438_1361620_+\|phage-tail-sheath-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	0
NZ_CP017541.1\|WP_021265529.1\|1353414_1353684_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	0.00043013
NZ_CP017541.1\|WP_006248186.1\|1355975_1356893_+\|baseplate-assembly-protein	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	2.51993e-162
NZ_CP017541.1\|WP_062716029.1\|1349442_1349901_+\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	7.37533e-46
NZ_CP017541.1\|WP_006248188.1\|1355038_1355644_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	6.91574e-54
NZ_CP017541.1\|WP_015981653.1\|1357514_1359794_+\|variable-tail-fiber-protein-H	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	4.3765e-64
NZ_CP017541.1\|WP_006248187.1\|1355643_1355979_+\|hypothetical-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	4.2175e-51
NZ_CP017541.1\|WP_075270712.1\|1362551_1362668_+\|GpE-family-phage-tail-protein	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	4.4762e-13
NZ_CP017541.1\|WP_006248178.1\|1361628_1362135_+\|phage-major-tail-tube-protein	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	6.87602e-92
NZ_CP017541.1\|WP_006248193.1\|1348964_1349450_+\|phage-tail-protein	gnl\|CDD\|369126	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR). This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.	1.06418e-48
NZ_CP017541.1\|WP_006248194.1\|1348746_1348968_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	2.4799e-22
NZ_CP017541.1\|WP_006248177.1\|1362213_1362528_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	1.80603e-05
NZ_CP017541.1\|WP_006248174.1\|1363517_1364756_+\|phage-late-control-D-family-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.56135e-176
NZ_CP017541.1\|WP_006248175.1\|1363080_1363518_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	1.54833e-46

>NZ_CP017541.1|WP_006248186.1|1355975_1356893_+|baseplate-assembly-protein
MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVMAARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERLVVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVSVISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEINAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQPRTDLVLTPYQAGYCVNYTLNVEVSDEYS
>NZ_CP017541.1|WP_006248187.1|1355643_1355979_+|hypothetical-protein
MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKLTDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKISIKGMRFTL
>NZ_CP017541.1|WP_006248188.1|1355038_1355644_+|phage-baseplate-assembly-protein-V
MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFLPWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFSDGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQGAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP
>NZ_CP017541.1|WP_020910232.1|1353718_1354759_-|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017541.1|WP_021265529.1|1353414_1353684_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQIAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIICRRSNLI
>NZ_CP017541.1|WP_006250778.1|1353242_1353422_+|hypothetical-protein
MMFKEKGYDEFVNECVRKGREEHKAGLGFTLEQSRLHIKKTIEQKSQELNEFQREVVYG
>NZ_CP017541.1|WP_006248191.1|1349951_1350230_-|hypothetical-protein
MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLANMVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ
>NZ_CP017541.1|WP_062716029.1|1349442_1349901_+|phage-virion-morphogenesis-protein
MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELDRSQRRRIKAQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAVIARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS
>NZ_CP017541.1|WP_006248193.1|1348964_1349450_+|phage-tail-protein
MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSFEYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYDIYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPNE
>NZ_CP017541.1|WP_006248194.1|1348746_1348968_+|TraR/DksA-family-transcriptional-regulator
MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIPEKRREMVIGCTRCIECQTIYEHKQKGYRR
>NZ_CP017541.1|WP_015981653.1|1357514_1359794_+|variable-tail-fiber-protein-H
MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITPSASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVAVANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLSSPDGYKHIGRCKSVAELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKRVDLSHLTLFDFGAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVQILGNKTGKLVLGAGIQQAEAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHIDNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQSYCGSGNAGHYLCTKVKGVRFFNNIAIGGRNVSAYGATSCSDIFILGNREQGMAVTTVDVEAGVQVEDVQTGECVVANNICSHDIWMSGAKNAIINSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKYGSFDNPSLFIDNINFINNILEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLARNNPCLNLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQEWQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNLYQLRLLINNEEKERLINQSVSPKNSKSNTNGMTTINFDTVVYLKVGDIVDLQYKTTHELTLLSDSFLSQIYVTQEF
>NZ_CP017541.1|WP_006248181.1|1359794_1360037_+|hypothetical-protein
MTKKHYCTGWRSAPANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRAWLFWLVVRAFGWRFYKNKEIKIEK
>NZ_CP017541.1|WP_006248179.1|1360438_1361620_+|phage-tail-sheath-protein
MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAETFPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANIVGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISDNGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTVGWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLATDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDPRILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKAL
>NZ_CP017541.1|WP_006248178.1|1361628_1362135_+|phage-major-tail-tube-protein
MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL
>NZ_CP017541.1|WP_006248177.1|1362213_1362528_+|phage-tail-assembly-protein
MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVDEWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEILA
>NZ_CP017541.1|WP_075270712.1|1362551_1362668_+|GpE-family-phage-tail-protein
MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES
>NZ_CP017541.1|WP_006253663.1|1362731_1363079_+|hypothetical-protein
MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFISLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLISYIIYHSQTVTIK
>NZ_CP017541.1|WP_006248175.1|1363080_1363518_+|phage-tail-protein
MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVGAMPKSQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVIDRISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI
>NZ_CP017541.1|WP_006248174.1|1363517_1364756_+|phage-late-control-D-family-protein
MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHRLIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDELTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFENEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRITRSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVKRGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSAINACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSLNKGGGFTTALEMELKPKSED
>NZ_CP017541.1|WP_006248173.1|1364938_1365745_-|DUF3800-domain-containing-protein
MNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQKLREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGDYEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKKTAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR

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Crispr_ID: NZ_CP017541_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017541_4

1727353-1728454

TypeI

Consensus_repeat	Method
GTTTCAATTCNCAGCCACGCGTAGGTGGCTG	CRT
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	PILER-CR
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CRISPRCasFinder

16 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

The CRISPR arrays of NZ_CP017541_4

>merge|NZ_CP017541|4|1727353-1728454|CRT,PILER-CR,CRISPRCasFinder
ATTTCAATATATATTGATGCGAAGGTAGCAGCCAATGGCGAAAACATAGGATTTGTGGGTACACCGTTTCAATACACAGCCACGCGAAGGTGGCTGCCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCAAATTCAAGATATACAATTGACCGCAACAGATAAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCTGTTTCAATTCACAGCCACGCGTAGGTGGCTGCGGGGATTAACCGAACAGGATTGGATTCGTTATGAGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGGGTTTCAATTCACAGCCACGCGTAGGTGGCTGCCTCTAGCATTAAAATCCAATCGGTAAACGGTAAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCCCAACAATGCTTTTCTTTGTATAACCAGCCACGAGTTTCAATTCACAGCCACGCGTAGGTGGCTGGTATCATTTATCGCCCGAAAAATCCAAAAATCGCAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTAAAAGATTACTACTACCCTATGGCAATAAGTGTAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGCGCAAGCATTGCACCACGGTAACAACGGCTGCTGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCACGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGCCTTATCTTAACTGACTCCGGAGGTATTCAAGAAGTTTCAATTCGCAGCCACGCGTAGGTGGCTGGTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGGGTTTCAATTCGCAGCCACGCGTAGGTGGCTGG

>NZ_CP017541|4|1|1727353-1728453|CRT
ATTTCAATATATATTGATGCGAAGGTAGCAG	CCAATGGCGAAAACATAGGATTTGTGGGTACACC
GTTTCAATACACAGCCACGCGAAGGTGGCTG	CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CAAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	GTATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCCTTATCTTAACTGACTCCGGAGGTATTCAAGAA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG

>NZ_CP017541|4|1|1727418-1728453|PILER-CR
GTTTCAATACACAGCCACGCGAAGGTGGCTG	CCTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CAAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CGCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CTTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	CCCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTG	GTATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GGTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GCCTTATCTTAACTGACTCCGGAGGTATTCAAGAA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG	GTTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTG

>NZ_CP017541|4|4|1727418-1728454|CRISPRCasFinder
GTTTCAATACACAGCCACGCGAAGGTGGCTGC	CTATTGTCGCCCTTGATTTTCCAATTCAAGACGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	AAATTCAAGATATACAATTGACCGCAACAGATAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TTGGTTATAATTAAAATTGATTGCGGTACACGCCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GGGGATTAACCGAACAGGATTGGATTCGTTATGAG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GCGTAGCTAATGGCAGATTTTTACGGCAATTTAGG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CTCTAGCATTAAAATCCAATCGGTAAACGGTAAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TTTAATTAATAAAATAGCTTTAGCTTTAGATTTAA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CCAACAATGCTTTTCTTTGTATAACCAGCCACGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGG	TATCATTTATCGCCCGAAAAATCCAAAAATCGCA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GTAAAAGATTACTACTACCCTATGGCAATAAGTGTA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	CGCAAGCATTGCACCACGGTAACAACGGCTGCTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GCGTTTATCAGCATCTGCTCGTGTTACTGTGCCAC
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	GTGCAAACTACTCCGATAACCGAAGTAGCAGCGGTG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	CCTTATCTTAACTGACTCCGGAGGTATTCAAGAA
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG	TTTACCGTAGATCAAAATGCCATTGCTCGTTATAGG
GTTTCAATTCGCAGCCACGCGTAGGTGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017541.1\|WP_006251213.1\|1713902_1714619_+\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|227018
NZ_CP017541.1\|WP_006251215.1\|1713095_1713425_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377570
NZ_CP017541.1\|WP_134983790.1\|1737371_1737833_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006247812.1\|1723438_1723732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248109.1\|1732035_1732899_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP017541.1\|WP_134916814.1\|1730120_1730414_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_006248107.1\|1734711_1735389_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP017541.1\|WP_006253506.1\|1737991_1739128_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP017541.1\|WP_006248113.1\|1729004_1730018_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017541.1\|WP_006248118.1\|1725692_1727168_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP017541.1\|WP_006248111.1\|1730414_1731335_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017541.1\|WP_147008795.1\|1719989_1723316_+\|DUF1983-domain-containing-protein	unknown	unknown	gnl\|CDD\|370435
NZ_CP017541.1\|WP_006251214.1\|1713424_1713895_+\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|227018
NZ_CP017541.1\|WP_020828760.1\|1714622_1715354_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|163704
NZ_CP017541.1\|WP_006248114.1\|1728644_1728938_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017541.1\|WP_006253509.1\|1731361_1732036_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP017541.1\|WP_006249176.1\|1715622_1716252_+\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
NZ_CP017541.1\|WP_031192850.1\|1732908_1734690_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP017541.1\|WP_006248119.1\|1724036_1725539_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP017541.1\|WP_075272501.1\|1716261_1719993_+\|host-specificity-protein-J	unknown	unknown	gnl\|CDD\|227076

Protein	Function_ID	Function_description	E-value
NZ_CP017541.1\|WP_006251213.1\|1713902_1714619_+\|phage-minor-tail-protein-L	gnl\|CDD\|227018	COG4672, gp18, Phage-related protein [Function unknown].	2.58576e-107
NZ_CP017541.1\|WP_006251215.1\|1713095_1713425_+\|phage-tail-protein	gnl\|CDD\|377570	pfam05939, Phage_min_tail, Phage minor tail protein. This family consists of a series of phage minor tail proteins and related sequences from several bacterial species.	3.39431e-41
NZ_CP017541.1\|WP_006248107.1\|1734711_1735389_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.38632e-113
NZ_CP017541.1\|WP_006248109.1\|1732035_1732899_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.47515e-155
NZ_CP017541.1\|WP_006253506.1\|1737991_1739128_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.08341e-47
NZ_CP017541.1\|WP_006248113.1\|1729004_1730018_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP017541.1\|WP_006248118.1\|1725692_1727168_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP017541.1\|WP_147008795.1\|1719989_1723316_+\|DUF1983-domain-containing-protein	gnl\|CDD\|370435	pfam09327, DUF1983, Domain of unknown function (DUF1983). Members of this family of functionally uncharacterized domains are found in various bacteriophage host specificity proteins.	7.73836e-20
NZ_CP017541.1\|WP_006251214.1\|1713424_1713895_+\|phage-minor-tail-protein-L	gnl\|CDD\|227018	COG4672, gp18, Phage-related protein [Function unknown].	1.14329e-36
NZ_CP017541.1\|WP_075272501.1\|1716261_1719993_+\|host-specificity-protein-J	gnl\|CDD\|227076	COG4733, COG4733, Phage-related protein, tail component [Function unknown].	0
NZ_CP017541.1\|WP_006248114.1\|1728644_1728938_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.20021e-33
NZ_CP017541.1\|WP_006253509.1\|1731361_1732036_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.93186e-40
NZ_CP017541.1\|WP_006249176.1\|1715622_1716252_+\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	9.91807e-52
NZ_CP017541.1\|WP_031192850.1\|1732908_1734690_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP017541.1\|WP_006248119.1\|1724036_1725539_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017541.1\|WP_020828760.1\|1714622_1715354_+\|C40-family-peptidase	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	3.53831e-47

>NZ_CP017541.1|WP_006248118.1|1725692_1727168_-|ribonuclease-G
MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQRVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM
>NZ_CP017541.1|WP_006248119.1|1724036_1725539_-|lysine--tRNA-ligase
MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK
>NZ_CP017541.1|WP_006247812.1|1723438_1723732_+|hypothetical-protein
MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTNFVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKYLKETGQIVV
>NZ_CP017541.1|WP_147008795.1|1719989_1723316_+|DUF1983-domain-containing-protein
MNADKLTDITSRVANAESTITNFQSTKANKSEVASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGGSSRVASSQYGDRRLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFTRTGLNYVYLIREDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEATDWFAFHSVKLEMGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISGLTTRMGAAESNLTRTERAVTELNQTTVTTLRDLTARTKTTEGSLSRLETAKASKTEVASIAQSSLQSIWKADAKSAVDSLSIGARNLLIDSTYNQHINYNTKMSSITRTVYRGNMLIRLGMLGGAGVAGIVQAPAAQVSNIRQGQEYTLSLNVQGTAGIQKTGLNYVFLMRADGANQRLATIPVIASLLNRPKITFTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTPAPEDVDSAVSAVSAKIDTIQETLANADSALSSRIDAVTASVGSNLAKITQVSNAVAGVDGKLSATHTIKTETIAGGRKAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQPVRLFGVAQNKVAINGDLIATGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKLAIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRNIFNRNEQDNYGLKNGGLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIENIEKPGGAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGKANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITANEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTITGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGKLKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEANQSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS
>NZ_CP017541.1|WP_075272501.1|1716261_1719993_+|host-specificity-protein-J
MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLVDGFKSIYLDGTKIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKKNGAIVRTVTDERINRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKYSSQYLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAVAGISFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEIYDLAPILSKMLGVEISFDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYDLLNDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQVTYSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKETITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFTYINGEATHSSKIQSVNGKEITLDSTPTGLETYGVWSLSTKQISSGLYRSISIVENADGTNTITALQHEPQKEAIVDNSAHFVETARTLYKAPQINAVEVSTGYDGKLYITGDISSGDGKLTYDIKITKDGNLYQYKKGLSDPNIELSDLPNGDYTVIIYGKNAKGQIVTEKTQTFTIDRPPAPTGVVVTGGLGQITLEWDWVNEVTQTEIFAAETDNFALAKKIAKVTARTYAHTLKGNKVVRYYWLRHTRGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIVNEVFDVAAPARGLELVKTVANLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAEDVTGKLSKSKIDTSLISQLTGADNTANLARRLAETAQSNINQEITNRQDAVTAEANNRTKAIQAESANLTKKIQAEATARGAAVTQLQNVDAQQAQLISAVTAKADNALSGLEEEKTARANGDKAESQAREALTARMGAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIGGRNLLRDSEFNAYNKWGSPQIEFAENANRRTIKVTSTGTNGPVGIVSSNRHSTSYFQQGETYTLSLFARGSKALDYLYLMRQDGNNVRLPVINVASETEFNHYKLTFKAPFTTQQGYVLIGFRQTSTEQFVEFHSVKLEKGNVATDWTPAPEDVESAVSAVSADLTSYKQTQAATDSAQAQQLNQLSVNLTKAETNFNAKITEEKKLVLMQIK
>NZ_CP017541.1|WP_006249176.1|1715622_1716252_+|tail-assembly-protein
MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRDGVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAAFALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNLNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK
>NZ_CP017541.1|WP_020828760.1|1714622_1715354_+|C40-family-peptidase
MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKANYFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIHKFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQGQGFERVETPQIGDVILMQVGADVPNHAAIYIGEQMVIHHSPNRLSKRDLYDGYWLRHTHSIWRHKLADKLDFDGILNDIAVNN
>NZ_CP017541.1|WP_006251213.1|1713902_1714619_+|phage-minor-tail-protein-L
MPISISNQMKLDLAKLEQNAMLDLYEVDLRKLQDKNGNAGSVYRFYSGLNELKTSIVWQGRTYDPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIANQFDECIGAIVRRHQVYAQYLDAVNFAGGNAKADPNQEIISHFVIEQLSSLTRETATFTLALPIETDNAKIPSRIIMADTCTWIYRSAECGYTGKQYFDEKDKATSDPKADKCSHCLNGCELRGNQRNFGGFVSVNKLG
>NZ_CP017541.1|WP_006251214.1|1713424_1713895_+|phage-minor-tail-protein-L
MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEIFRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVEDFGQPVEAKVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK
>NZ_CP017541.1|WP_006251215.1|1713095_1713425_+|phage-tail-protein
MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKYQGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFTLNFDEVI
>NZ_CP017541.1|WP_006248114.1|1728644_1728938_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVTPAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL
>NZ_CP017541.1|WP_006248113.1|1729004_1730018_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGIEGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGVGLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAVTLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP017541.1|WP_134916814.1|1730120_1730414_-|DUF3800-domain-containing-protein
MQHNKISFEDSVNNSLIQASDVIAGLLAGIGEQIQKYNEQEFYNEFISKLNPNHLENLKLLAQIYQNSIYKSNGLFTHFFAPLSFICRLQNFIFSYK
>NZ_CP017541.1|WP_006248111.1|1730414_1731335_-|hypothetical-protein
MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGSNFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKLGSKELRKVLEWINENNLCIHFALYDWVYFYDVDIIDSALIESDVCSVWKYLSEKIGNSNRYKEIKDYQRKVGLDKQSDDIIYLFYIKELLHDFIINNLQWFLSEIYNNHYKKIDNQEKTVFLDNLYNMIKGSEKYKVLEFFLEKIDRNKYLSFIYDKLDSEMNEDKTFIMLVEDMSPPYQNYLNTFPLSEFYFDKGMEHVFIDY
>NZ_CP017541.1|WP_006253509.1|1731361_1732036_-|CRISPR-associated-protein-Cas4
MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIHNEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDLKTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIFSTELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVGVFGSLL
>NZ_CP017541.1|WP_006248109.1|1732035_1732899_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDVCLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAREITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTEGLTGVTVEELL
>NZ_CP017541.1|WP_031192850.1|1732908_1734690_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSKGNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAKDQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDANVVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVFGGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDASTVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELSENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLLLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKAVLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDEQGRFAIGYYHQKQSYFAKKETTESIEN
>NZ_CP017541.1|WP_006248107.1|1734711_1735389_-|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQQRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFAANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPFYAEEVKS
>NZ_CP017541.1|WP_134983790.1|1737371_1737833_-|hypothetical-protein
MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK
>NZ_CP017541.1|WP_006253506.1|1737991_1739128_-|transposase
MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYEQDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKFKKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFVSIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKNKVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSAKGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPCCNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	NZ_CP017541.1	1360510-1360546	1.0
NZ_CP017541_4	4.19\|1727584\|37\|NZ_CP017541\|CRISPRCasFinder	1727584-1727620	37	NZ_CP017541.1	1309051-1309087	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	NZ_CP017541.1	1360161-1360194	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	NZ_CP017541.1	1359886-1359920	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	NZ_CP017541.1	1360510-1360545	1.0
NZ_CP017541_4	4.30\|1728321\|34\|NZ_CP017541\|CRISPRCasFinder	1728321-1728354	34	NZ_CP017541.1	2702151-2702184	1.0
NZ_CP017541_4	4.31\|1728387\|36\|NZ_CP017541\|CRISPRCasFinder	1728387-1728422	36	NZ_CP017541.1	2708059-2708094	1.0

1. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to position: 1360510-1360546, mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 4.19|1727584|37|NZ_CP017541|CRISPRCasFinder matches to position: 1309051-1309087, mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

3. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to position: 1360161-1360194, mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

4. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to position: 1359886-1359920, mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

5. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to position: 1360510-1360545, mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

6. spacer 4.30|1728321|34|NZ_CP017541|CRISPRCasFinder matches to position: 2702151-2702184, mismatch: 0, identity: 1.0

ccttatcttaactgactccggaggtattcaagaa	CRISPR spacer
ccttatcttaactgactccggaggtattcaagaa	Protospacer
**********************************

7. spacer 4.31|1728387|36|NZ_CP017541|CRISPRCasFinder matches to position: 2708059-2708094, mismatch: 0, identity: 1.0

tttaccgtagatcaaaatgccattgctcgttatagg	CRISPR spacer
tttaccgtagatcaaaatgccattgctcgttatagg	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	NC_008201	Mannheimia phage phiMHaA1, complete genome	15663-15721	0	1.0
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	15663-15721	0	1.0
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	15663-15721	0	1.0
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	15863-15921	0	1.0
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	16092-16150	0	1.0
NZ_CP017541_3	3.1\|1357413\|59\|NZ_CP017541\|CRISPRCasFinder	1357413-1357471	59	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	15663-15721	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18776	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18851	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18816	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19012	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19177	0	1.0
NZ_CP017541_4	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18776	0	1.0
NZ_CP017541_4	4.19\|1727584\|37\|NZ_CP017541\|CRISPRCasFinder	1727584-1727620	37	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	27263-27299	0	1.0
NZ_CP017541_4	4.19\|1727584\|37\|NZ_CP017541\|CRISPRCasFinder	1727584-1727620	37	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	27371-27407	0	1.0
NZ_CP017541_4	4.22\|1727787\|34\|NZ_CP017541\|CRISPRCasFinder	1727787-1727820	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19193-19226	0	1.0
NZ_CP017541_4	4.22\|1727787\|34\|NZ_CP017541\|CRISPRCasFinder	1727787-1727820	34	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19018-19051	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18424	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18499	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18464	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18660	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18825	0	1.0
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18424	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18170	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18170	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18170	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18370	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18599	0	1.0
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18170	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18775	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18850	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18815	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19011	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19176	0	1.0
NZ_CP017541_4	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18775	0	1.0
NZ_CP017541_4	4.4\|1727583\|38\|NZ_CP017541\|CRT,PILER-CR	1727583-1727620	38	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	27262-27299	1	0.974
NZ_CP017541_4	4.4\|1727583\|38\|NZ_CP017541\|CRT,PILER-CR	1727583-1727620	38	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	27370-27407	1	0.974
NZ_CP017541_4	4.7\|1727786\|35\|NZ_CP017541\|CRT,PILER-CR	1727786-1727820	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19192-19226	1	0.971
NZ_CP017541_4	4.7\|1727786\|35\|NZ_CP017541\|CRT,PILER-CR	1727786-1727820	35	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19017-19051	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18425	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18500	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18465	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18661	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18826	1	0.971
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18425	1	0.971
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18171	1	0.972
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18171	1	0.972
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18171	1	0.972
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18371	1	0.972
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18600	1	0.972
NZ_CP017541_4	4.13\|1728185\|36\|NZ_CP017541\|CRT,PILER-CR	1728185-1728220	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18171	1	0.972
NZ_CP017541_1	1.1\|917312\|29\|NZ_CP017541\|CRISPRCasFinder	917312-917340	29	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	22354-22382	5	0.828
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19416	6	0.824
NZ_CP017541_4	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19425	6	0.824
NZ_CP017541_2	2.1\|966899\|29\|NZ_CP017541\|CRISPRCasFinder	966899-966927	29	NZ_CP045463	Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence	37941-37969	7	0.759
NZ_CP017541_2	2.1\|966899\|29\|NZ_CP017541\|CRISPRCasFinder	966899-966927	29	NZ_CP045512	Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence	37941-37969	7	0.759
NZ_CP017541_2	2.1\|966899\|29\|NZ_CP017541\|CRISPRCasFinder	966899-966927	29	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	104085-104113	7	0.759
NZ_CP017541_2	2.1\|966899\|29\|NZ_CP017541\|CRISPRCasFinder	966899-966927	29	NZ_CP012834	Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence	14210-14238	7	0.759
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19417	7	0.8
NZ_CP017541_4	4.12\|1728119\|35\|NZ_CP017541\|CRT,PILER-CR	1728119-1728153	35	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19426	7	0.8
NZ_CP017541_4	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	HM144385	Brochothrix phage NF5, complete genome	32998-33032	10	0.714
NZ_CP017541_4	4.23\|1727853\|35\|NZ_CP017541\|CRISPRCasFinder	1727853-1727887	35	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	368774-368808	11	0.686
NZ_CP017541_4	4.25\|1727986\|34\|NZ_CP017541\|CRISPRCasFinder	1727986-1728019	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	710003-710036	11	0.676

1. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

2. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

3. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

4. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

5. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

6. spacer 3.1|1357413|59|NZ_CP017541|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	CRISPR spacer
acctaaaaagctccctgttattgtcattaaaagcaaaatggatttatttagtgcaacaa	Protospacer
***********************************************************

7. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

8. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

9. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

10. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

11. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

12. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

13. spacer 4.19|1727584|37|NZ_CP017541|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

14. spacer 4.19|1727584|37|NZ_CP017541|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

15. spacer 4.22|1727787|34|NZ_CP017541|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

16. spacer 4.22|1727787|34|NZ_CP017541|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

17. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

18. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

19. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

20. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

21. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

22. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

23. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

24. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

25. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

26. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

27. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

28. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

29. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

30. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

31. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

32. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

33. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

34. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

35. spacer 4.4|1727583|38|NZ_CP017541|CRT,PILER-CR matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

36. spacer 4.4|1727583|38|NZ_CP017541|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

37. spacer 4.7|1727786|35|NZ_CP017541|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

38. spacer 4.7|1727786|35|NZ_CP017541|CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

39. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

40. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

41. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

42. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

43. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

44. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

45. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

46. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

47. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

48. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

49. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

50. spacer 4.13|1728185|36|NZ_CP017541|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

51. spacer 1.1|917312|29|NZ_CP017541|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

agacctgatactaatctagggtataaaga	CRISPR spacer
aaacctcataataatctagggtataaggc	Protospacer
*.**** *** ***************.*

52. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

53. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

54. spacer 2.1|966899|29|NZ_CP017541|CRISPRCasFinder matches to NZ_CP045463 (Salmonella enterica subsp. enterica serovar Anatum strain M-3851 plasmid p48k, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

55. spacer 2.1|966899|29|NZ_CP017541|CRISPRCasFinder matches to NZ_CP045512 (Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p48k, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

56. spacer 2.1|966899|29|NZ_CP017541|CRISPRCasFinder matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
taattttctaatgcttgctatctgctcaa	Protospacer
 . ******.********.******* .*

57. spacer 2.1|966899|29|NZ_CP017541|CRISPRCasFinder matches to NZ_CP012834 (Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 plasmid pCFSAN001588_001, complete sequence) position: , mismatch: 7, identity: 0.759

agtttttctgatgcttgccatctgctaga	CRISPR spacer
catttatctgatgctggccatctgcgaac	Protospacer
 .*** ********* ********* *.

58. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

59. spacer 4.12|1728119|35|NZ_CP017541|CRT,PILER-CR matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

60. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 10, identity: 0.714

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
ataattatcaacatctggtcgtgttactggtcgat	Protospacer
... ******.****** ***********  * *.

61. spacer 4.23|1727853|35|NZ_CP017541|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

tttaattaataaaatagctttagctttagatttaa	CRISPR spacer
ccaatctaataaaataattttagctttagatcggg	Protospacer
.. * .**********..*************. ..

62. spacer 4.25|1727986|34|NZ_CP017541|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 11, identity: 0.676

tatcatttatcgcccgaaaaatccaaaaatcgca	CRISPR spacer
acaagcttatcgcccaaaaaatccaacaataaaa	Protospacer
    ..*********.********** *** . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44517 : 52025

Mannheimia_phage(81.82%)

tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095578351.1\|44517_44712_-	hypothetical protein	A0A0M3LSS2	Mannheimia_phage	1.9e-06	94.1
WP_006248673.1\|44698_44941_-	hypothetical protein	A0A0M3LSI9	Mannheimia_phage	4.4e-45	100.0
WP_134983781.1\|44941_47002_-\|tail	phage tail protein	A0A0M3LRW6	Mannheimia_phage	0.0e+00	98.7
WP_006253441.1\|46998_47556_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	3.9e-105	98.9
WP_006253442.1\|47504_48500_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	1.5e-99	85.6
WP_006251296.1\|48552_48741_-	hypothetical protein	A0A0M3LSQ8	Mannheimia_phage	2.2e-28	100.0
WP_006253443.1\|48770_49139_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.6e-62	100.0
WP_006253444.1\|49138_49513_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	1.5e-63	100.0
WP_006253446.1\|50002_50806_-\|transposase	transposase	A0A0M3LPN5	Mannheimia_phage	2.4e-31	35.9
WP_006248972.1\|50850_51129_-	DNA-binding protein	F6MII4	Haemophilus_phage	1.0e-16	57.5
WP_006248970.1\|51305_52025_+	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	4.4e-64	60.0

DBSCAN-SWA_2

577523 : 661479

Mannheimia_phage(17.02%)

head,tail,tRNA,protease,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249683.1\|577523_578201_-	helix-turn-helix transcriptional regulator	A0A0M3LP76	Mannheimia_phage	6.2e-36	36.6
WP_006253637.1\|578414_578633_+	transcriptional regulator	A0A0M3LPY8	Mannheimia_phage	1.1e-21	71.8
WP_020828826.1\|578642_580613_+\|transposase	transposase	C9DGL1	Escherichia_phage	9.6e-146	43.9
WP_006253638.1\|580792_581281_-	hypothetical protein	NA	NA	NA	NA
WP_006249679.1\|581312_582254_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-63	48.4
WP_006249678.1\|582256_582571_+	hypothetical protein	F6MII9	Haemophilus_phage	1.6e-26	61.5
WP_006249677.1\|582582_582819_+	hypothetical protein	NA	NA	NA	NA
WP_006249676.1\|582802_583096_+	hypothetical protein	NA	NA	NA	NA
WP_051133738.1\|583217_583436_+	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.1e-10	85.0
WP_006249674.1\|583445_583628_+	hypothetical protein	A0A0M3LSN0	Mannheimia_phage	1.1e-19	81.7
WP_006249673.1\|583644_584034_+	hypothetical protein	NA	NA	NA	NA
WP_006249672.1\|584082_584370_+	hypothetical protein	NA	NA	NA	NA
WP_006249671.1\|584488_585034_+	DUF1018 domain-containing protein	A0A2I7S9B8	Vibrio_phage	7.5e-16	33.2
WP_006249670.1\|585020_585554_+	hypothetical protein	F6MIJ5	Haemophilus_phage	5.0e-41	53.7
WP_006249669.1\|585718_586078_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	1.1e-23	45.1
WP_006249668.1\|586213_586723_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.1e-56	66.2
WP_006249667.1\|586725_586995_+	DUF2644 domain-containing protein	NA	NA	NA	NA
WP_015484419.1\|586988_587336_+	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	3.4e-30	60.9
WP_006249664.1\|587514_587850_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_006249663.1\|587851_588148_+	hypothetical protein	A0A0C4UR00	Shigella_phage	3.6e-25	58.9
WP_006249662.1\|588170_588743_+	DUF3486 family protein	M4MCR3	Vibrio_phage	8.0e-37	45.5
WP_006249661.1\|588742_590299_+	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.4e-160	60.2
WP_006249659.1\|590417_591872_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.8e-118	46.8
WP_006249658.1\|591864_593142_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	1.3e-55	48.6
WP_006249656.1\|593343_593688_-	hypothetical protein	NA	NA	NA	NA
WP_006249655.1\|593751_594216_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	1.6e-14	35.2
WP_006249654.1\|594450_595566_+	hypothetical protein	A4JWJ9	Burkholderia_virus	2.3e-64	38.4
WP_006249653.1\|595596_596523_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.4e-75	48.7
WP_006249652.1\|596591_596873_+	hypothetical protein	NA	NA	NA	NA
WP_006249651.1\|596872_597307_+	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	7.7e-16	40.7
WP_006249650.1\|597312_597810_+	hypothetical protein	NA	NA	NA	NA
WP_006249649.1\|597894_599280_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	3.2e-95	43.3
WP_006249648.1\|599290_599806_+\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.6e-07	25.3
WP_006249647.1\|599901_600216_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_080542703.1\|600212_600365_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_006249646.1\|600343_600646_-	hypothetical protein	NA	NA	NA	NA
WP_062715984.1\|600693_603351_+\|tail	phage tail tape measure protein	Q19UR0	Mannheimia_phage	1.4e-14	47.4
WP_006249644.1\|603360_604284_+\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	3.6e-18	29.1
WP_006249643.1\|604267_604495_+	membrane protein	A4JWL2	Burkholderia_virus	7.1e-13	47.8
WP_006249642.1\|604487_605552_+	hypothetical protein	A4JWL3	Burkholderia_virus	5.6e-68	41.6
WP_006249641.1\|605538_606075_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_006249640.1\|606129_606492_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_006249639.1\|606501_607605_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	9.4e-58	37.3
WP_006249638.1\|607597_608164_+\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	2.8e-42	48.7
WP_006249637.1\|608173_610453_+\|tail	tail fiber protein	A0A0R6PHL4	Moraxella_phage	1.4e-18	33.3
WP_006249636.1\|610453_611056_+	hypothetical protein	A0A0R6PC75	Moraxella_phage	5.0e-05	31.4
WP_006249635.1\|611039_611315_+	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	5.4e-31	73.5
WP_006249634.1\|611314_611602_+	hypothetical protein	NA	NA	NA	NA
WP_006249632.1\|611768_612473_+	hypothetical protein	NA	NA	NA	NA
WP_075274821.1\|612641_612773_+	adhesin	NA	NA	NA	NA
WP_006249630.1\|612820_613609_+	hypothetical protein	F6MIM2	Haemophilus_phage	2.5e-105	68.3
WP_006249629.1\|613645_616084_-	S6 family igA-specific metalloendopeptidase	Q9LA58	Enterobacterial_phage	6.0e-49	33.7
WP_006249628.1\|616403_618170_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.0e-13	25.5
WP_006249627.1\|618324_619236_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_006253685.1\|619358_620441_+	DNA polymerase IV	NA	NA	NA	NA
WP_006253684.1\|620528_621398_+\|protease	protease HtpX	NA	NA	NA	NA
WP_006253683.1\|621451_621946_-	DedA family protein	NA	NA	NA	NA
WP_006249873.1\|622146_622971_+	formate transporter FocA	NA	NA	NA	NA
WP_006249872.1\|623060_625385_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.4e-159	41.4
WP_006250030.1\|625619_626645_+	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	1.3e-90	54.3
WP_006250031.1\|626893_627634_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	4.2e-22	25.7
WP_006250032.1\|627764_629831_+	oligopeptidase A	A0A1V0SD92	Indivirus	1.2e-50	23.8
WP_006250033.1\|629952_631110_+	chorismate mutase	NA	NA	NA	NA
WP_006250034.1\|631168_631384_-	YdcH family protein	NA	NA	NA	NA
WP_006250035.1\|631573_632389_+	hypothetical protein	NA	NA	NA	NA
WP_006250036.1\|632450_633095_-	adenylate kinase	A0A1B4XWI3	Tenacibaculum_phage	6.5e-11	36.6
WP_006253681.1\|633206_634910_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_006253680.1\|634944_635343_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_015484415.1\|635370_636507_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.8e-19	27.5
WP_015484414.1\|636503_637319_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005624547.1\|637318_638200_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006250037.1\|638196_638865_-	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.0e-10	28.9
WP_006250039.1\|639208_640492_-	MFS transporter	NA	NA	NA	NA
WP_006250041.1\|640657_644374_+	methionine synthase	A0A140XBC7	Dickeya_phage	1.3e-18	70.0
WP_006250042.1\|644481_646485_+	N-6 DNA methylase	B3GAM1	uncultured_virus	1.5e-16	37.3
WP_020831139.1\|646583_647951_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_006251873.1\|647964_648699_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_006253678.1\|648701_649337_+	hypothetical protein	NA	NA	NA	NA
WP_062715982.1\|649604_650342_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-13	27.6
WP_006249330.1\|650338_651307_-	iron ABC transporter permease	NA	NA	NA	NA
WP_006253677.1\|651487_651823_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006249042.1\|651806_652130_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_006249043.1\|652119_654006_-	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_006249044.1\|654053_654836_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_006249045.1\|654884_656045_-	hypothetical protein	NA	NA	NA	NA
WP_006249046.1\|656104_657121_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	7.2e-89	48.9
WP_006249047.1\|657208_657370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249048.1\|657347_658349_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249049.1\|658350_658755_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006249050.1\|658889_659072_+	hypothetical protein	NA	NA	NA	NA
WP_006249051.1\|659075_659405_+	hypothetical protein	NA	NA	NA	NA
WP_006249052.1\|659440_660193_-	Fic family protein	NA	NA	NA	NA
WP_006249053.1\|660231_661479_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-119	54.4

DBSCAN-SWA_3

917575 : 973540

Mannheimia_phage(26.67%)

transposase,integrase

attL 955996:956011|attR 974441:974456

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096864247.1\|917575_918616_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006252258.1\|918769_919543_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_006248318.1\|919691_923888_+	autotransporter domain-containing protein	Q9LA58	Enterobacterial_phage	8.1e-94	43.0
WP_006248319.1\|923942_925037_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_006248320.1\|925123_925393_+	DUF1040 family protein	NA	NA	NA	NA
WP_006248321.1\|925456_926095_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_015484370.1\|926178_926955_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_015484369.1\|926964_927219_+	luciferase	NA	NA	NA	NA
WP_006252261.1\|927220_927514_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_015587023.1\|927580_928621_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.6e-200	99.1
WP_006248363.1\|928733_928931_-	hypothetical protein	NA	NA	NA	NA
WP_006248362.1\|929017_929992_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	7.8e-40	33.6
WP_006248360.1\|930767_931544_-	hypothetical protein	A0A0S2MUV7	Bacillus_phage	2.4e-12	33.5
WP_006248359.1\|931540_931747_-	hypothetical protein	NA	NA	NA	NA
WP_006248357.1\|931912_932167_-	hypothetical protein	NA	NA	NA	NA
WP_049800970.1\|932405_932660_+	hypothetical protein	NA	NA	NA	NA
WP_006248354.1\|932996_933548_+	hypothetical protein	A0A0A8WFI2	Clostridium_phage	5.8e-16	39.3
WP_021265545.1\|933617_933848_+	hypothetical protein	NA	NA	NA	NA
WP_015484352.1\|933946_934987_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.1e-193	95.7
WP_006253296.1\|935021_935327_-	TIR domain-containing protein	NA	NA	NA	NA
WP_006253295.1\|935388_937371_-	AlwI family type II restriction endonuclease	NA	NA	NA	NA
WP_006248352.1\|937371_939540_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0D3MSW0	Lactococcus_phage	1.5e-62	45.2
WP_075270679.1\|939684_939894_-	hypothetical protein	NA	NA	NA	NA
WP_075270676.1\|940150_941218_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_006253302.1\|941301_941565_-	hypothetical protein	NA	NA	NA	NA
WP_006248350.1\|941773_942238_+	ArdC family protein	NA	NA	NA	NA
WP_006248349.1\|942341_943178_+	hypothetical protein	NA	NA	NA	NA
WP_006248347.1\|944468_944729_-	hypothetical protein	NA	NA	NA	NA
WP_006248346.1\|944841_945204_-	hypothetical protein	NA	NA	NA	NA
WP_006248345.1\|945294_945645_-	hypothetical protein	NA	NA	NA	NA
WP_006248344.1\|945742_946150_-	hypothetical protein	NA	NA	NA	NA
WP_015484362.1\|946173_946821_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_005719361.1\|948049_949153_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.9e-63	39.9
WP_005719365.1\|949176_949500_+	hypothetical protein	NA	NA	NA	NA
WP_006248341.1\|949559_950114_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_005719369.1\|950138_951026_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_006248340.1\|951167_952469_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.5e-17	26.7
WP_005719374.1\|952465_953629_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_005719377.1\|953625_954273_+	DUF452 family protein	NA	NA	NA	NA
WP_006248339.1\|954276_955032_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_006248338.1\|955049_955691_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
955996:956011	attL	NA	NA	NA	NA
WP_005719386.1\|956682_957672_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-22	33.8
WP_032845458.1\|957668_958661_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-12	24.6
WP_006248336.1\|958678_959110_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_006253298.1\|960078_960357_+	hypothetical protein	NA	NA	NA	NA
WP_006248334.1\|960383_962486_+	integrating conjugative element protein	B4UTQ6	Rhizobium_phage	5.6e-27	46.7
WP_006248333.1\|962489_962921_+	hypothetical protein	NA	NA	NA	NA
WP_006248332.1\|962985_964074_+	AAA family ATPase	E7C9Q8	Salmonella_phage	6.1e-110	54.3
WP_006248329.1\|964508_964766_+	hypothetical protein	NA	NA	NA	NA
WP_006248326.1\|965263_965581_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006248324.1\|965701_965932_+	hypothetical protein	NA	NA	NA	NA
WP_006248322.1\|966199_966754_-	hypothetical protein	NA	NA	NA	NA
WP_015587024.1\|967071_967803_-\|transposase	transposase	NA	NA	NA	NA
WP_015587023.1\|967801_968842_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.6e-200	99.1
WP_006248364.1\|968973_969216_+	hypothetical protein	NA	NA	NA	NA
WP_006248366.1\|969375_969633_-	hypothetical protein	NA	NA	NA	NA
WP_006248367.1\|969644_970145_-	hypothetical protein	NA	NA	NA	NA
WP_147008793.1\|970648_972622_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_006248370.1\|972775_973540_+\|integrase	site-specific integrase	NA	NA	NA	NA
974441:974456	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1059561 : 1118626

Escherichia_phage(17.39%)

tail,capsid,transposase,integrase

attL 1059189:1059208|attR 1063294:1063313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1059189:1059208	attL	NA	NA	NA	NA
WP_006248937.1\|1059561_1059957_+\|tail	tail protein	K7PJP5	Enterobacteria_phage	5.6e-05	26.6
WP_006248938.1\|1059967_1061836_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	8.1e-78	63.9
WP_006248939.1\|1061994_1063236_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.2e-55	34.6
WP_006248940.1\|1063548_1063875_-	preprotein translocase subunit SecG	NA	NA	NA	NA
1063294:1063313	attR	NA	NA	NA	NA
WP_006248941.1\|1063980_1065900_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	3.8e-38	31.4
WP_006248942.1\|1065972_1066800_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_006248943.1\|1066818_1067901_-	chorismate synthase	A0A291AU41	Pandoravirus	7.2e-87	47.1
WP_006248944.1\|1067903_1071281_-	mechanosensitive channel MscK	NA	NA	NA	NA
WP_006248945.1\|1071273_1072692_-	o-succinylbenzoate--CoA ligase	NA	NA	NA	NA
WP_006248946.1\|1072701_1073268_-	replication initiation negative regulator SeqA	NA	NA	NA	NA
WP_006253612.1\|1073386_1074169_+	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	1.3e-05	36.4
WP_006248948.1\|1074178_1074907_+	carboxy-S-adenosyl-L-methionine synthase CmoA	H9YRL8	environmental_Halophage	7.1e-22	29.1
WP_006248949.1\|1075042_1076062_+	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	1.9e-33	32.9
WP_006248950.1\|1076063_1076666_+	DedA family protein	NA	NA	NA	NA
WP_006248951.1\|1076794_1076950_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_006248952.1\|1077027_1077609_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.9e-27	38.4
WP_006248953.1\|1077623_1078271_-	uridine kinase	A0A1V0SAA3	Catovirus	4.7e-33	36.6
WP_006248954.1\|1078374_1079004_+	amino acid transporter	NA	NA	NA	NA
WP_006248955.1\|1079118_1080171_+	rod shape-determining protein	F2Y2E1	Organic_Lake_phycodnavirus	1.2e-06	22.1
WP_006248956.1\|1080272_1081328_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_006248957.1\|1081327_1081816_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_006248958.1\|1081825_1083163_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	4.6e-83	41.7
WP_006248959.1\|1083249_1084035_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_006248960.1\|1084159_1084960_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_006248961.1\|1084994_1085888_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
WP_006248962.1\|1085893_1086124_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_006251553.1\|1086248_1087037_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_006253613.1\|1087069_1089019_+	LTA synthase family protein	NA	NA	NA	NA
WP_006248834.1\|1089089_1090007_-	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_006248835.1\|1090019_1090382_-	hypothetical protein	NA	NA	NA	NA
WP_006253614.1\|1090619_1091342_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_006248838.1\|1091402_1091717_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_006248840.1\|1091843_1092602_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_006248841.1\|1092666_1093707_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_006248842.1\|1093890_1095222_+	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	8.4e-53	80.2
WP_006248843.1\|1095311_1095776_+	ribonuclease HI	J9Q745	Salmonella_phage	2.9e-45	54.1
WP_006248845.1\|1095921_1096425_+	colicin V biosynthesis protein	NA	NA	NA	NA
WP_006248846.1\|1096439_1097957_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.4e-83	40.4
WP_006248847.1\|1097990_1098440_-	hypothetical protein	NA	NA	NA	NA
WP_006248848.1\|1098452_1099559_-	murein transglycosylase A	NA	NA	NA	NA
WP_006251679.1\|1099863_1101456_+	exodeoxyribonuclease VII large subunit	M1NLU2	Moumouvirus	7.5e-32	40.6
WP_012340861.1\|1101950_1102775_+	ParA family protein	NA	NA	NA	NA
WP_012340860.1\|1102786_1104148_+	replicative DNA helicase	O80281	Escherichia_phage	6.7e-98	45.5
WP_012340859.1\|1104156_1105803_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_012340858.1\|1105795_1106353_+	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_014325837.1\|1106511_1107702_+	hypothetical protein	NA	NA	NA	NA
WP_012340856.1\|1107880_1108639_+	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_012340855.1\|1108647_1109133_+	DUF3158 family protein	NA	NA	NA	NA
WP_012340854.1\|1109488_1109941_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	4.0e-39	57.4
WP_011200812.1\|1110247_1110436_+	hypothetical protein	NA	NA	NA	NA
WP_011200813.1\|1110476_1110779_+	hypothetical protein	NA	NA	NA	NA
WP_011200814.1\|1110778_1112089_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.1e-96	41.5
WP_014325836.1\|1112184_1113387_-	tetracycline efflux MFS transporter Tet(H)	A0A2H4UVM2	Bodo_saltans_virus	1.5e-08	24.7
WP_006248868.1\|1113478_1114102_+	tetracycline resistance transcriptional repressor TetR(H)	NA	NA	NA	NA
WP_001067858.1\|1114355_1115060_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_014325835.1\|1115143_1116028_-	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000052512.1\|1116083_1117559_-	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_001067855.1\|1117921_1118626_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_5

1163868 : 1181599

Staphylococcus_phage(28.57%)

transposase,integrase

attL 1164601:1164615|attR 1182474:1182488

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014325826.1\|1163868_1164633_+\|integrase	site-specific integrase	F1BUS9	Erwinia_phage	6.4e-05	28.6
1164601:1164615	attL	NA	NA	NA	NA
WP_075266381.1\|1164810_1165785_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	8.8e-52	38.8
WP_014325825.1\|1165899_1166805_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(42)	NA	NA	NA	NA
WP_075266406.1\|1166948_1167194_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|1167224_1168718_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|1168829_1169135_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014325824.1\|1169162_1170377_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	3.2e-19	28.7
WP_001447541.1\|1170653_1171538_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_075268008.1\|1171858_1172083_-	hypothetical protein	NA	NA	NA	NA
WP_014325823.1\|1172165_1173458_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_025288851.1\|1173620_1174466_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001082319.1\|1174634_1175438_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|1175437_1176274_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000018321.1\|1176609_1177425_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
WP_021112546.1\|1178341_1179352_+	hypothetical protein	NA	NA	NA	NA
WP_075266381.1\|1179452_1180427_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	8.8e-52	38.8
WP_087437310.1\|1180396_1180621_-	hypothetical protein	NA	NA	NA	NA
WP_012340803.1\|1180699_1181599_-\|integrase	site-specific integrase	Q56VN7	Pseudomonas_phage	2.6e-05	23.3
1182474:1182488	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1293757 : 1385288

108

Mannheimia_phage(88.61%)

head,tail,capsid,terminase,tRNA,integrase,portal,holin,plate,transposase

attL 1362669:1362685|attR 1388193:1388209

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249379.1\|1293757_1295161_-\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	6.9e-82	37.7
WP_015484287.1\|1295633_1296623_+\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	7.6e-184	100.0
WP_015484286.1\|1296619_1296877_-	hypothetical protein	A0A0M3LQR4	Mannheimia_phage	1.2e-40	100.0
WP_020824296.1\|1296903_1297395_-	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	5.4e-98	100.0
WP_006250263.1\|1297894_1298359_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_006250262.1\|1298342_1298546_-	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_006250261.1\|1298542_1299070_-	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.7e-86	100.0
WP_006250260.1\|1299147_1299600_-	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.8e-85	100.0
WP_006250258.1\|1299809_1300445_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	3.8e-120	100.0
WP_006250257.1\|1300441_1301236_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	5.4e-148	100.0
WP_006253370.1\|1301276_1302227_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	3.1e-158	100.0
WP_006250256.1\|1302239_1302452_-	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	5.8e-33	100.0
WP_006250255.1\|1302585_1303065_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	2.4e-79	100.0
WP_006250254.1\|1303061_1303421_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250253.1\|1303424_1303931_-	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	5.7e-95	100.0
WP_006250251.1\|1304499_1304736_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	2.1e-36	100.0
WP_006250250.1\|1305117_1305348_-	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	6.5e-38	100.0
WP_006250986.1\|1305639_1305915_+	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006253368.1\|1305923_1306229_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.6e-54	100.0
WP_020910232.1\|1306366_1307407_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006249172.1\|1307628_1308147_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.7e-95	100.0
WP_006249171.1\|1308216_1308807_-	hypothetical protein	A0A0M3LTC6	Mannheimia_phage	3.8e-98	100.0
WP_006249169.1\|1309990_1310629_+	DUF1007 family protein	NA	NA	NA	NA
WP_006249168.1\|1310619_1311606_+	nickel/cobalt transporter	NA	NA	NA	NA
WP_006249167.1\|1311710_1313156_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_006249166.1\|1313226_1314096_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_006249165.1\|1314104_1315265_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_006249164.1\|1315557_1316787_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_006249163.1\|1316889_1319703_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_095578364.1\|1319867_1320614_-	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L0W2	Tupanvirus	1.4e-17	35.9
WP_006249161.1\|1320838_1322368_+	murein DD-endopeptidase MepM	Q8SBN9	Clostridium_phage	1.7e-17	47.9
WP_006249160.1\|1322377_1323061_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_006249159.1\|1323145_1324867_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.9e-65	31.0
WP_031192872.1\|1324994_1325843_+	OmpA family protein	NA	NA	NA	NA
WP_006249157.1\|1325930_1326749_+	pyridoxal phosphatase	NA	NA	NA	NA
WP_015587056.1\|1326751_1328443_+	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
WP_006249155.1\|1328493_1329012_+	N-acetyltransferase	NA	NA	NA	NA
WP_006249154.1\|1329054_1329654_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	Q66YC8	Euphorbia_ringspot_virus	2.6e-09	27.5
WP_006249153.1\|1329650_1329971_+	YbjQ family protein	NA	NA	NA	NA
WP_006249152.1\|1329974_1330427_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_006249151.1\|1330467_1331049_-	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_006248209.1\|1331357_1332317_+	transcriptional regulator	NA	NA	NA	NA
WP_006253548.1\|1332309_1334061_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006248207.1\|1334063_1335029_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_006248206.1\|1335015_1335909_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_006248205.1\|1335979_1337032_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_006248204.1\|1337040_1337271_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_006248203.1\|1337400_1338483_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_006248202.1\|1338569_1338965_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_006248201.1\|1339189_1340194_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_006248200.1\|1340969_1342010_-\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.4e-199	100.0
WP_006250768.1\|1342018_1343857_-\|terminase	terminase ATPase subunit family protein	R9QCL2	Mannheimia_phage	0.0e+00	100.0
WP_006248198.1\|1343970_1344798_+\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	4.7e-139	100.0
WP_006248197.1\|1344811_1345840_+\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	2.7e-192	100.0
WP_006250770.1\|1345849_1346539_+\|terminase	terminase endonuclease subunit	Q19US0	Mannheimia_phage	2.2e-121	100.0
WP_006248195.1\|1346650_1347166_+\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	3.3e-90	100.0
WP_006250771.1\|1347162_1347375_+\|tail	tail protein	A0A0M3LPY0	Mannheimia_phage	2.0e-33	100.0
WP_006250772.1\|1347380_1347587_+\|holin	holin	Q19UR7	Mannheimia_phage	7.6e-30	100.0
WP_006250773.1\|1347579_1348146_+	lysozyme	Q19UR6	Mannheimia_phage	2.3e-105	100.0
WP_006248210.1\|1348142_1348598_+	hypothetical protein	A0A0M3LQV2	Mannheimia_phage	1.4e-71	100.0
WP_006248194.1\|1348746_1348968_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.4e-36	100.0
WP_006248193.1\|1348964_1349450_+\|tail	phage tail protein	Q19UR3	Mannheimia_phage	1.5e-89	100.0
WP_062716029.1\|1349442_1349901_+	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	9.8e-78	99.3
WP_006248191.1\|1349951_1350230_-	hypothetical protein	Q19UR1	Mannheimia_phage	2.6e-33	100.0
WP_006250778.1\|1353242_1353422_+	hypothetical protein	A0A0M3LP21	Mannheimia_phage	7.5e-26	100.0
WP_021265529.1\|1353414_1353684_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LP36	Mannheimia_phage	3.6e-40	91.7
WP_020910232.1\|1353718_1354759_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006248188.1\|1355038_1355644_+\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	9.3e-84	100.0
WP_006248187.1\|1355643_1355979_+	hypothetical protein	Q19UQ6	Mannheimia_phage	7.7e-56	100.0
WP_006248186.1\|1355975_1356893_+\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	6.2e-164	100.0
WP_006248185.1\|1356879_1357512_+\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	1.0e-101	100.0
WP_015981653.1\|1357514_1359794_+\|tail	variable tail fiber protein H	Q19UW4	Mannheimia_virus	0.0e+00	100.0
WP_006248181.1\|1359794_1360037_+	hypothetical protein	Q19UQ2	Mannheimia_phage	1.7e-44	100.0
WP_006248179.1\|1360438_1361620_+\|tail	phage tail sheath protein	Q19UP9	Mannheimia_phage	5.2e-224	100.0
WP_006248178.1\|1361628_1362135_+\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	1.7e-91	100.0
WP_006248177.1\|1362213_1362528_+\|tail	phage tail assembly protein	Q19UP7	Mannheimia_phage	3.8e-49	100.0
WP_075270712.1\|1362551_1362668_+\|tail	GpE family phage tail protein	R9QCM4	Mannheimia_phage	5.0e-15	97.4
1362669:1362685	attL	NA	NA	NA	NA
WP_006253663.1\|1362731_1363079_+	hypothetical protein	R9QBV4	Mannheimia_phage	4.0e-55	100.0
WP_006248175.1\|1363080_1363518_+\|tail	phage tail protein	Q19UP5	Mannheimia_phage	2.5e-75	100.0
WP_006248174.1\|1363517_1364756_+	phage late control D family protein	Q19UP4	Mannheimia_phage	7.7e-218	100.0
WP_006248173.1\|1364938_1365745_-	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	2.3e-154	100.0
WP_006248172.1\|1365779_1366040_-	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	2.2e-34	100.0
WP_006253662.1\|1366139_1366550_-	hypothetical protein	A0A0M3LP57	Mannheimia_phage	5.5e-72	100.0
WP_006248170.1\|1366567_1367086_-	hypothetical protein	Q19UP0	Mannheimia_phage	2.5e-93	100.0
WP_006248169.1\|1367089_1367776_-	helix-turn-helix domain-containing protein	A0A0M3LPF9	Mannheimia_phage	7.0e-128	100.0
WP_006248168.1\|1367899_1368112_+	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	4.9e-32	100.0
WP_006253660.1\|1368210_1368456_-	hypothetical protein	A0A0M3LNP3	Mannheimia_phage	3.8e-36	100.0
WP_006248166.1\|1368588_1368861_+	hypothetical protein	Q19UN6	Mannheimia_phage	4.5e-46	100.0
WP_006248165.1\|1368943_1369276_+	hypothetical protein	Q19UT2	Mannheimia_phage	4.8e-50	100.0
WP_006248164.1\|1369288_1369582_+	hypothetical protein	Q19UT1	Mannheimia_phage	4.1e-53	100.0
WP_006248162.1\|1369733_1369976_+	hypothetical protein	Q19UT0	Mannheimia_phage	9.5e-40	100.0
WP_006248161.1\|1369972_1370305_+	hypothetical protein	Q19US9	Mannheimia_phage	1.6e-61	100.0
WP_006248160.1\|1370301_1372662_+	replication endonuclease	Q19US8	Mannheimia_phage	0.0e+00	100.0
WP_006248159.1\|1372674_1373007_+	hypothetical protein	A0A0M3LPG9	Mannheimia_phage	2.5e-59	100.0
WP_006248158.1\|1373006_1373459_+	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.7e-77	100.0
WP_006248157.1\|1373469_1373802_+	hypothetical protein	A0A0M3LNQ0	Mannheimia_phage	2.3e-60	100.0
WP_006248156.1\|1373791_1374061_+	hypothetical protein	A0A0M3LQ12	Mannheimia_phage	1.1e-44	100.0
WP_006248155.1\|1374035_1374326_+	hypothetical protein	A0A0M3LQ35	Mannheimia_phage	3.2e-50	100.0
WP_006248154.1\|1374595_1374778_-	hypothetical protein	Q19US2	Mannheimia_phage	2.7e-23	100.0
WP_006248153.1\|1375055_1376054_-\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	1.1e-185	100.0
WP_006248152.1\|1376421_1377222_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	4.0e-10	37.1
WP_062715986.1\|1377313_1379290_-	exoribonuclease II	NA	NA	NA	NA
WP_006248149.1\|1379449_1379728_+	hypothetical protein	NA	NA	NA	NA
WP_006248148.1\|1379752_1380049_+	hypothetical protein	A0A2R2X2B2	Escherichia_phage	2.1e-12	42.3
WP_006248147.1\|1380101_1380893_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_006251533.1\|1381036_1381810_-	FNR family transcription factor	NA	NA	NA	NA
WP_006248145.1\|1382040_1382466_+	universal stress protein	NA	NA	NA	NA
WP_006248143.1\|1382660_1385288_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	4.6e-79	37.1
1388193:1388209	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1550692 : 1663578

130

Mannheimia_phage(55.22%)

tail,terminase,tRNA,integrase,protease,portal,holin,transposase

attL 1631697:1631730|attR 1655010:1655043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015587044.1\|1550692_1551733_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	1.1e-201	100.0
WP_006253551.1\|1551935_1553252_-	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_006253552.1\|1553380_1553566_-	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_006249010.1\|1553681_1555004_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_006249011.1\|1555219_1555543_+	hypothetical protein	NA	NA	NA	NA
WP_006249013.1\|1556834_1557053_+	cell division protein ZapB	NA	NA	NA	NA
WP_006249014.1\|1557108_1557690_+	thymidine kinase	A0A2H4YFP5	Citrobacter_phage	5.6e-54	52.1
WP_006249015.1\|1557780_1558899_-	anaerobic sulfatase maturase	A0A1B2IB49	Erwinia_phage	1.3e-06	28.2
WP_006249016.1\|1558988_1560437_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	7.1e-13	27.1
WP_006249017.1\|1560583_1562281_-	solute:sodium symporter family transporter	NA	NA	NA	NA
WP_006249018.1\|1562424_1562976_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_006249019.1\|1563074_1563884_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_006249020.1\|1563900_1564593_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_006249021.1\|1564679_1565762_-	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	6.5e-80	46.7
WP_006249022.1\|1565850_1566690_-	membrane protein	A0A1I9SA48	Rhodococcus_phage	1.3e-35	37.0
WP_006249023.1\|1566841_1569502_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	1.6e-79	44.0
WP_006249024.1\|1569512_1569995_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_006249025.1\|1570051_1571170_-	ribonuclease D	NA	NA	NA	NA
WP_006249026.1\|1571303_1572491_+	ROK family protein	NA	NA	NA	NA
WP_006249027.1\|1572538_1573261_+	dethiobiotin synthase	NA	NA	NA	NA
WP_006249028.1\|1573309_1573519_-	alternative ribosome-rescue factor A	NA	NA	NA	NA
WP_006249029.1\|1573670_1574426_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006249030.1\|1574456_1575533_+	AI-2E family transporter	NA	NA	NA	NA
WP_006249031.1\|1575546_1576485_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	6.6e-28	28.6
WP_006249032.1\|1576534_1579141_-	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	3.1e-91	37.0
WP_006249033.1\|1579270_1580161_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006249034.1\|1580210_1580471_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_006249035.1\|1580550_1581510_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006251052.1\|1581706_1582114_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.7e-20	40.7
WP_006249369.1\|1582113_1582758_-	stringent starvation protein A	NA	NA	NA	NA
WP_006249370.1\|1582931_1583429_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_015484189.1\|1583443_1584409_+	asparaginase	NA	NA	NA	NA
WP_006249372.1\|1584427_1585516_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_006249373.1\|1585736_1586147_-	hypothetical protein	NA	NA	NA	NA
WP_006249374.1\|1586149_1588168_-	excinuclease ABC subunit B	NA	NA	NA	NA
WP_006249376.1\|1588406_1588643_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_080628642.1\|1588805_1589651_+	EfeM/EfeO family lipoprotein	NA	NA	NA	NA
WP_006253556.1\|1589664_1590858_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_015484185.1\|1590868_1591219_+	hypothetical protein	NA	NA	NA	NA
WP_015484184.1\|1591215_1591488_+	hypothetical protein	NA	NA	NA	NA
WP_006249382.1\|1591523_1592342_-	PHP domain-containing protein	NA	NA	NA	NA
WP_006249381.1\|1592353_1592953_-	hypothetical protein	NA	NA	NA	NA
WP_006249380.1\|1592949_1594497_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_015484183.1\|1594916_1595507_+	hypothetical protein	A0A0M3LPE1	Mannheimia_phage	3.7e-101	100.0
WP_006249172.1\|1595576_1596095_+	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.7e-95	100.0
WP_015484180.1\|1596641_1596935_-	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	1.2e-47	100.0
WP_006250517.1\|1597049_1597649_-	hypothetical protein	A0A0M3LR33	Mannheimia_phage	7.5e-110	100.0
WP_100067196.1\|1597649_1598093_-	hypothetical protein	A0A0M3LS02	Mannheimia_phage	4.7e-77	99.3
WP_147008794.1\|1598092_1601086_-	DUF1983 domain-containing protein	A0A0M3LQG1	Mannheimia_phage	0.0e+00	98.7
WP_075272501.1\|1601082_1604814_-	host specificity protein J	A0A0M3LQG1	Mannheimia_phage	0.0e+00	98.9
WP_006249176.1\|1604823_1605453_-\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	1.0e-109	100.0
WP_020828760.1\|1605721_1606453_-	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.2e-146	99.2
WP_006249178.1\|1606456_1607173_-\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	2.3e-134	98.3
WP_006249179.1\|1607172_1607502_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	4.1e-17	38.9
WP_006249180.1\|1607501_1611068_-	tape measure protein	A0A125RN77	Pseudomonas_phage	2.3e-33	34.3
WP_006249181.1\|1611121_1611349_-	hypothetical protein	NA	NA	NA	NA
WP_006249183.1\|1611411_1611642_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_006249184.1\|1611686_1612088_-	hypothetical protein	NA	NA	NA	NA
WP_006249185.1\|1612171_1612813_-	hypothetical protein	NA	NA	NA	NA
WP_006249186.1\|1612840_1613236_-\|tail	phage tail protein	NA	NA	NA	NA
WP_006249187.1\|1613232_1613757_-\|tail	tail protein	M9NZH5	Enterobacteria_phage	1.9e-16	37.0
WP_006249188.1\|1613760_1614063_-\|tail	phage tail protein	NA	NA	NA	NA
WP_006249189.1\|1614055_1614379_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	4.9e-15	38.3
WP_006249190.1\|1614452_1616414_-	peptidase S14	A0A1W6JT88	Pseudomonas_phage	3.3e-199	55.0
WP_006249191.1\|1616425_1617925_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	4.4e-159	56.8
WP_006249192.1\|1617924_1618149_-	hypothetical protein	NA	NA	NA	NA
WP_006249193.1\|1618145_1620257_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	2.0e-274	67.7
WP_006249194.1\|1620256_1620733_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	9.3e-39	54.7
WP_006249195.1\|1620880_1621279_-	hypothetical protein	NA	NA	NA	NA
WP_020824324.1\|1621414_1621648_-	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	7.0e-32	86.5
WP_006249197.1\|1621592_1621943_-	DUF2570 domain-containing protein	A0A0M3LPB1	Mannheimia_phage	1.5e-22	88.8
WP_015484172.1\|1621943_1622540_-	glycoside hydrolase family 19 protein	A0A0M3LPP0	Mannheimia_phage	4.1e-92	84.7
WP_006249199.1\|1622529_1622877_-\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	2.5e-49	89.9
WP_015587037.1\|1623040_1623847_-	nitrate ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_015484169.1\|1623926_1624286_-	hypothetical protein	NA	NA	NA	NA
WP_006249418.1\|1624275_1624635_-	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	2.3e-13	33.9
WP_015587038.1\|1624627_1625656_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.8e-48	33.9
WP_015484167.1\|1625725_1626298_-	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	3.1e-105	96.8
WP_006249422.1\|1626294_1626930_-	bacteriophage replication protein	A0A0M3LS65	Mannheimia_phage	1.5e-55	56.3
WP_006249423.1\|1626917_1627709_-	helix-turn-helix domain-containing protein	D0UIL5	Aggregatibacter_phage	7.7e-30	76.1
WP_006249424.1\|1627705_1628467_-	hypothetical protein	A0A2I7R415	Vibrio_phage	6.5e-26	33.3
WP_006249425.1\|1628515_1628740_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	2.6e-15	65.6
WP_006249426.1\|1628866_1629598_+	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	7.4e-43	39.8
WP_006249427.1\|1629602_1630106_+	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_015484164.1\|1630102_1631215_+	hypothetical protein	NA	NA	NA	NA
WP_015484163.1\|1631478_1631709_+	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	2.5e-37	98.7
1631697:1631730	attL	NA	NA	NA	NA
WP_006248786.1\|1632161_1632413_+	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	1.7e-31	85.2
WP_006248787.1\|1632415_1632691_-	hypothetical protein	A0A1J0MFQ1	Staphylococcus_phage	1.2e-06	30.4
WP_006248788.1\|1632904_1633090_+	hypothetical protein	NA	NA	NA	NA
WP_006248789.1\|1633073_1633271_+	hypothetical protein	NA	NA	NA	NA
WP_006248790.1\|1633273_1633732_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	6.0e-35	48.0
WP_006248791.1\|1633767_1634127_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	3.6e-19	51.5
WP_006248792.1\|1634196_1635000_+	YfdQ family protein	I3PUY7	Vibrio_phage	1.1e-50	40.1
WP_006248793.1\|1635109_1635628_+	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.4e-77	82.3
WP_006248794.1\|1635624_1635825_+	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.9e-17	67.2
WP_006248795.1\|1635808_1636306_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	3.5e-28	45.9
WP_015484162.1\|1636309_1636498_-	hypothetical protein	A0A0M3LPW7	Mannheimia_phage	5.0e-28	93.5
WP_006248797.1\|1636629_1637007_-	hypothetical protein	NA	NA	NA	NA
WP_006248800.1\|1637236_1638076_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.6e-73	52.9
WP_006248801.1\|1638323_1639001_+	phage repressor protein/antirepressor Ant	A0A0M3LQ72	Mannheimia_phage	2.0e-58	91.3
WP_006248804.1\|1639239_1639677_+	hypothetical protein	Q19US5	Mannheimia_phage	4.7e-05	38.5
WP_006248805.1\|1639669_1639963_+	hypothetical protein	A0A0M3LQA6	Mannheimia_phage	1.1e-05	37.9
WP_006248806.1\|1639965_1640175_+	hypothetical protein	NA	NA	NA	NA
WP_006248807.1\|1640321_1640447_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_006248808.1\|1640493_1641336_+	hypothetical protein	F6MIM2	Haemophilus_phage	4.0e-109	67.3
WP_006248809.1\|1641398_1641890_+	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	1.1e-95	96.9
WP_006248810.1\|1641915_1642191_+	DUF4224 domain-containing protein	A0A0M3LNT7	Mannheimia_phage	4.5e-46	98.9
WP_006248811.1\|1642150_1643206_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	1.0e-199	99.7
WP_006248812.1\|1643332_1644406_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_006248814.1\|1644673_1645357_+	DUF218 domain-containing protein	NA	NA	NA	NA
WP_006248815.1\|1645393_1646233_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_006248816.1\|1646302_1646704_-	H-NS histone family protein	NA	NA	NA	NA
WP_006253512.1\|1647140_1648673_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_006248819.1\|1648898_1649651_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006248820.1\|1649662_1650853_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_006248821.1\|1650854_1651661_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_006253513.1\|1651710_1653117_+	YdgA family protein	NA	NA	NA	NA
WP_015587044.1\|1653183_1654224_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	1.1e-201	100.0
WP_006253274.1\|1654361_1655006_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	1.2e-97	83.6
WP_006250074.1\|1655341_1655761_-	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-27	50.4
1655010:1655043	attR	NA	NA	NA	NA
WP_006250075.1\|1655799_1655982_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.6e-07	51.7
WP_006250077.1\|1656113_1656611_-	hypothetical protein	A0A0M3LR76	Mannheimia_phage	1.6e-44	97.9
WP_006248823.1\|1656603_1656984_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_006248824.1\|1657058_1657742_-	hypothetical protein	K7PKK1	Enterobacteria_phage	2.8e-20	31.6
WP_006248825.1\|1657872_1658073_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006247808.1\|1658474_1659161_+	hypothetical protein	NA	NA	NA	NA
WP_006247810.1\|1659337_1659637_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015484247.1\|1659608_1659998_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006247812.1\|1660141_1660435_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_006247813.1\|1660719_1663578_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	8.0e-69	30.6

DBSCAN-SWA_8

1669854 : 1745751

Mannheimia_phage(92.96%)

tail,terminase,tRNA,integrase,transposase

attL 1669152:1669211|attR 1691632:1693680

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1669152:1669211	attL	NA	NA	NA	NA
WP_011200814.1\|1669854_1671165_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.1e-96	41.5
WP_006247822.1\|1671203_1672244_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LQJ3	Mannheimia_phage	8.5e-202	100.0
WP_006247823.1\|1672265_1672487_-	DUF4224 domain-containing protein	A0A0M3LQA2	Mannheimia_phage	1.3e-35	100.0
WP_006247824.1\|1672536_1672920_-	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	2.4e-69	100.0
WP_006253375.1\|1673437_1674139_-	hypothetical protein	A0A0M3LR56	Mannheimia_phage	4.2e-136	100.0
WP_006247827.1\|1674683_1674899_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	1.6e-30	100.0
WP_006253371.1\|1675360_1675549_+	hypothetical protein	A0A0M3LSW7	Mannheimia_phage	4.5e-29	100.0
WP_006250263.1\|1675552_1676017_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_006250262.1\|1676000_1676204_-	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_006250261.1\|1676200_1676728_-	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.7e-86	100.0
WP_006250260.1\|1676805_1677258_-	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.8e-85	100.0
WP_006250258.1\|1677467_1678103_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	3.8e-120	100.0
WP_006250257.1\|1678099_1678894_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	5.4e-148	100.0
WP_006253370.1\|1678934_1679885_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	3.1e-158	100.0
WP_006250256.1\|1679897_1680110_-	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	5.8e-33	100.0
WP_006250255.1\|1680243_1680723_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	2.4e-79	100.0
WP_006250254.1\|1680719_1681079_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250253.1\|1681082_1681589_-	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	5.7e-95	100.0
WP_006250251.1\|1682157_1682394_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	2.1e-36	100.0
WP_006250250.1\|1682775_1683006_-	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	6.5e-38	100.0
WP_006250986.1\|1683297_1683573_+	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006253368.1\|1683581_1683887_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.6e-54	100.0
WP_015587023.1\|1684024_1685065_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.6e-200	99.1
WP_006250077.1\|1685174_1685672_-	hypothetical protein	A0A0M3LR76	Mannheimia_phage	1.6e-44	97.9
WP_006248823.1\|1685664_1686045_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_006250079.1\|1686095_1686755_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.2e-124	100.0
WP_006250080.1\|1686884_1687091_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	4.8e-32	100.0
WP_006253537.1\|1687111_1687372_+	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	3.3e-38	100.0
WP_006250084.1\|1687680_1688550_+	replication protein	A0A0M3LQL8	Mannheimia_phage	1.8e-165	100.0
WP_006250085.1\|1688546_1689908_+	DNA helicase	A0A0M3LQC0	Mannheimia_phage	7.1e-257	100.0
WP_006250086.1\|1689904_1690441_+	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	2.2e-105	100.0
WP_006250088.1\|1690531_1690747_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	7.2e-39	100.0
WP_006250089.1\|1690730_1691237_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	7.7e-92	100.0
WP_006250090.1\|1691286_1691499_+	hypothetical protein	A0A0M3LQX8	Mannheimia_phage	8.3e-32	100.0
WP_011200812.1\|1691803_1691992_+	hypothetical protein	NA	NA	NA	NA
WP_011200813.1\|1692032_1692335_+	hypothetical protein	NA	NA	NA	NA
WP_011200814.1\|1692334_1693645_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.1e-96	41.5
WP_006250093.1\|1693918_1694488_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	3.2e-102	100.0
1691632:1693680	attR	NA	NA	NA	NA
WP_062716082.1\|1694477_1694930_+	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	5.1e-79	100.0
WP_020910232.1\|1695027_1696068_+\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006251707.1\|1696478_1696664_+	hypothetical protein	A0A0M3LQD0	Mannheimia_phage	5.2e-30	100.0
WP_006250098.1\|1697002_1697248_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	3.1e-38	100.0
WP_006250099.1\|1697240_1697810_+	lysozyme	A0A0M3LQY4	Mannheimia_phage	1.5e-107	100.0
WP_006250100.1\|1697782_1698133_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	1.1e-28	100.0
WP_006250104.1\|1698702_1699227_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	1.7e-89	100.0
WP_015484276.1\|1699210_1700431_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LQ32	Mannheimia_phage	8.3e-241	100.0
WP_006251233.1\|1700427_1701804_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	4.3e-262	100.0
WP_015587047.1\|1701757_1702696_+	hypothetical protein	A0A0M3LQH2	Mannheimia_phage	2.6e-170	100.0
WP_015587048.1\|1702682_1704053_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	1.2e-243	100.0
WP_006251230.1\|1704045_1704480_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	8.7e-76	100.0
WP_006251229.1\|1704494_1705484_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	8.6e-188	100.0
WP_006251227.1\|1705767_1706145_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	7.3e-63	100.0
WP_006251226.1\|1706144_1706489_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.2e-61	100.0
WP_006251225.1\|1706490_1706859_+	hypothetical protein	A0A0M3LSU9	Mannheimia_phage	4.8e-59	100.0
WP_006251224.1\|1706855_1707236_+	hypothetical protein	A0A0M3LTB0	Mannheimia_phage	7.1e-66	100.0
WP_006251223.1\|1707239_1707722_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.3e-85	100.0
WP_006251222.1\|1707761_1708178_-	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	4.3e-72	100.0
WP_006251221.1\|1708233_1708410_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.3e-26	100.0
WP_006251220.1\|1708505_1709177_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	2.8e-121	100.0
WP_020824316.1\|1709191_1709425_-	hypothetical protein	A0A0M3LQZ8	Mannheimia_phage	7.0e-40	100.0
WP_006251218.1\|1709593_1710052_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	1.2e-78	100.0
WP_006251216.1\|1710596_1713092_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	0.0e+00	100.0
WP_006251215.1\|1713095_1713425_+\|tail	phage tail protein	A0A0M3LSV3	Mannheimia_phage	1.4e-57	100.0
WP_006251214.1\|1713424_1713895_+\|tail	phage minor tail protein L	A0A0M3LTB9	Mannheimia_phage	4.2e-84	100.0
WP_006251213.1\|1713902_1714619_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	4.2e-136	100.0
WP_020828760.1\|1714622_1715354_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	1.2e-146	99.2
WP_006249176.1\|1715622_1716252_+\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	1.0e-109	100.0
WP_075272501.1\|1716261_1719993_+	host specificity protein J	A0A0M3LQG1	Mannheimia_phage	0.0e+00	98.9
WP_147008795.1\|1719989_1723316_+	DUF1983 domain-containing protein	A0A0M3LR06	Mannheimia_phage	0.0e+00	98.4
WP_006247812.1\|1723438_1723732_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_006248119.1\|1724036_1725539_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	1.3e-86	38.7
WP_006248118.1\|1725692_1727168_-	ribonuclease G	NA	NA	NA	NA
WP_006248114.1\|1728644_1728938_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_006248113.1\|1729004_1730018_-	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_134916814.1\|1730120_1730414_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_006248111.1\|1730414_1731335_-	hypothetical protein	NA	NA	NA	NA
WP_006253509.1\|1731361_1732036_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_006248109.1\|1732035_1732899_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_031192850.1\|1732908_1734690_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_006248107.1\|1734711_1735389_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_134983790.1\|1737371_1737833_-	hypothetical protein	NA	NA	NA	NA
WP_006253506.1\|1737991_1739128_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	4.2e-122	57.5
WP_006253505.1\|1739174_1739591_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_006248103.1\|1739652_1740246_-	hypothetical protein	NA	NA	NA	NA
WP_006248102.1\|1740376_1742665_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_006253504.1\|1742928_1744692_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_006248100.1\|1744788_1745751_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA

DBSCAN-SWA_9

1871239 : 1881556

Mannheimia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249218.1\|1871239_1872214_-	single-stranded DNA-binding protein	A0A1S5NNJ1	Burkholderia_phage	8.9e-36	44.6
WP_006249219.1\|1872216_1872414_-	hypothetical protein	NA	NA	NA	NA
WP_006249220.1\|1872397_1872583_-	hypothetical protein	NA	NA	NA	NA
WP_006253352.1\|1873228_1873825_+	hypothetical protein	NA	NA	NA	NA
WP_006247789.1\|1873860_1874598_-	hypothetical protein	NA	NA	NA	NA
WP_006247790.1\|1874749_1875124_-	hypothetical protein	NA	NA	NA	NA
WP_006247791.1\|1875135_1875792_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	4.1e-37	42.5
WP_006247792.1\|1875916_1876105_+	hypothetical protein	A5VW97	Enterobacteria_phage	1.3e-12	62.1
WP_006247793.1\|1876162_1876846_+	hypothetical protein	A0A2I7RHG4	Vibrio_phage	4.7e-52	51.3
WP_006247794.1\|1876842_1877889_+	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-23	52.6
WP_006247795.1\|1877899_1878493_+	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	8.8e-87	75.5
WP_006253316.1\|1880602_1880926_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006253314.1\|1881006_1881174_-	DNA cytosine methyltransferase	A0A0M3LNT4	Mannheimia_phage	4.4e-20	76.8
WP_006247798.1\|1881181_1881556_-	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	1.1e-66	98.4

DBSCAN-SWA_10

1884789 : 1891733

Mannheimia_phage(60.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006253312.1\|1884789_1885500_+	tape measure protein	A0A125RN77	Pseudomonas_phage	2.2e-20	40.0
WP_006247806.1\|1885757_1886477_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_006247807.1\|1886698_1887325_+\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	5.8e-89	82.3
WP_006253310.1\|1887373_1887985_+	hypothetical protein	A0A0M3LQG1	Mannheimia_phage	7.7e-54	61.4
WP_006247808.1\|1888095_1888782_+	hypothetical protein	NA	NA	NA	NA
WP_006247810.1\|1888958_1889258_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_006247811.1\|1889229_1889619_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006250050.1\|1889762_1890056_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	2.2e-46	97.9
WP_006250049.1\|1890434_1891733_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	2.7e-72	36.4

DBSCAN-SWA_11

2326171 : 2334326

Synechococcus_phage(16.67%)

terminase,integrase

attL 2329377:2329436|attR 2334742:2334815

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006250276.1\|2326171_2326711_+	HAD-IIIA family hydrolase	A0A222YVZ6	Synechococcus_phage	3.1e-06	34.8
WP_006250894.1\|2326848_2327139_+	BrnT family toxin	NA	NA	NA	NA
WP_006250278.1\|2327110_2327413_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	3.5e-07	38.7
WP_006253765.1\|2327430_2327724_-	DUF3144 domain-containing protein	NA	NA	NA	NA
WP_015484067.1\|2327674_2327887_-	hypothetical protein	NA	NA	NA	NA
WP_006250280.1\|2327889_2328849_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	5.1e-44	40.2
2329377:2329436	attL	NA	NA	NA	NA
WP_006250282.1\|2329655_2330882_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	4.3e-80	39.9
WP_006253767.1\|2331156_2331375_+	addiction module killer protein	NA	NA	NA	NA
WP_006250284.1\|2331487_2331811_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.0e-12	43.5
WP_006250286.1\|2332205_2332892_+	hypothetical protein	NA	NA	NA	NA
WP_006250289.1\|2333211_2333637_+	hypothetical protein	NA	NA	NA	NA
WP_006250290.1\|2333633_2334326_+\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	7.5e-29	58.8
2334742:2334815	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP017541.1|WP_006250250.1|1305117_1305348_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP017541.1|WP_006250250.1|1305117_1305348_-|hypothetical-protein

1305117_1305348_-

76 aa aa

1293757-1385288

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP017541_4	TypeI	4.14\|1728252\|37\|NZ_CP017541\|CRT,PILER-CR	1728252-1728288	37	1360546-1360510
NZ_CP017541_4	TypeI	4.19\|1727584\|37\|NZ_CP017541\|CRISPRCasFinder	1727584-1727620	37	1309051-1309087
NZ_CP017541_4	TypeI	4.27\|1728120\|34\|NZ_CP017541\|CRISPRCasFinder	1728120-1728153	34	1360194-1360161
NZ_CP017541_4	TypeI	4.28\|1728186\|35\|NZ_CP017541\|CRISPRCasFinder	1728186-1728220	35	1359920-1359886
NZ_CP017541_4	TypeI	4.29\|1728253\|36\|NZ_CP017541\|CRISPRCasFinder	1728253-1728288	36	1360545-1360510

1. spacer 4.14|1728252|37|NZ_CP017541|CRT,PILER-CR matches to NZ_CP017541 position: 1360546-1360510, mismatch: 0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 4.19|1727584|37|NZ_CP017541|CRISPRCasFinder matches to NZ_CP017541 position: 1309051-1309087, mismatch: 0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

3. spacer 4.27|1728120|34|NZ_CP017541|CRISPRCasFinder matches to NZ_CP017541 position: 1360194-1360161, mismatch: 0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

4. spacer 4.28|1728186|35|NZ_CP017541|CRISPRCasFinder matches to NZ_CP017541 position: 1359920-1359886, mismatch: 0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

5. spacer 4.29|1728253|36|NZ_CP017541|CRISPRCasFinder matches to NZ_CP017541 position: 1360545-1360510, mismatch: 0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017541

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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