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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017542 Mannheimia haemolytica strain 1405, complete genome 3 crisprs cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,PD-DExK,RT 7 14 12 1

Results visualization

1. NZ_CP017542
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017542_1 915251-915325 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017542_2 1578372-1578486 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017542_3 1717754-1718855 TypeI NA
16 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 NZ_CP017542.1 1575281-1575317 0 1.0
NZ_CP017542_3 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder 1717985-1718021 37 NZ_CP017542.1 1626784-1626820 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 NZ_CP017542.1 1575633-1575666 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 NZ_CP017542.1 1575951-1575985 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 NZ_CP017542.1 1575282-1575317 0 1.0
NZ_CP017542_3 3.30|1718722|34|NZ_CP017542|CRISPRCasFinder 1718722-1718755 34 NZ_CP017542.1 2696361-2696394 0 1.0
NZ_CP017542_3 3.31|1718788|36|NZ_CP017542|CRISPRCasFinder 1718788-1718823 36 NZ_CP017542.1 2702269-2702304 0 1.0

1. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to position: 1575281-1575317, mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder matches to position: 1626784-1626820, mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

3. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to position: 1575633-1575666, mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

4. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to position: 1575951-1575985, mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

5. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to position: 1575282-1575317, mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

6. spacer 3.30|1718722|34|NZ_CP017542|CRISPRCasFinder matches to position: 2696361-2696394, mismatch: 0, identity: 1.0

ccttatcttaactgactccggaggtattcaagaa	CRISPR spacer
ccttatcttaactgactccggaggtattcaagaa	Protospacer
**********************************

7. spacer 3.31|1718788|36|NZ_CP017542|CRISPRCasFinder matches to position: 2702269-2702304, mismatch: 0, identity: 1.0

tttaccgtagatcaaaatgccattgctcgttatagg	CRISPR spacer
tttaccgtagatcaaaatgccattgctcgttatagg	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 NC_008201 Mannheimia phage phiMHaA1, complete genome 15663-15721 0 1.0
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 15663-15721 0 1.0
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 15663-15721 0 1.0
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 15863-15921 0 1.0
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 16092-16150 0 1.0
NZ_CP017542_2 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder 1578400-1578458 59 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 15663-15721 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18776 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18851 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18816 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19012 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19177 0 1.0
NZ_CP017542_3 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR 1718653-1718689 37 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18776 0 1.0
NZ_CP017542_3 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder 1717985-1718021 37 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27263-27299 0 1.0
NZ_CP017542_3 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder 1717985-1718021 37 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27371-27407 0 1.0
NZ_CP017542_3 3.22|1718188|34|NZ_CP017542|CRISPRCasFinder 1718188-1718221 34 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19193-19226 0 1.0
NZ_CP017542_3 3.22|1718188|34|NZ_CP017542|CRISPRCasFinder 1718188-1718221 34 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19018-19051 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 NC_008201 Mannheimia phage phiMHaA1, complete genome 18391-18424 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18466-18499 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18431-18464 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18627-18660 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18792-18825 0 1.0
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18391-18424 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 NC_008201 Mannheimia phage phiMHaA1, complete genome 18136-18170 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18136-18170 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18136-18170 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18336-18370 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18565-18599 0 1.0
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18136-18170 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18775 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18850 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18815 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19011 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19176 0 1.0
NZ_CP017542_3 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder 1718654-1718689 36 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18775 0 1.0
NZ_CP017542_3 3.4|1717984|38|NZ_CP017542|CRT,PILER-CR 1717984-1718021 38 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27262-27299 1 0.974
NZ_CP017542_3 3.4|1717984|38|NZ_CP017542|CRT,PILER-CR 1717984-1718021 38 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27370-27407 1 0.974
NZ_CP017542_3 3.7|1718187|35|NZ_CP017542|CRT,PILER-CR 1718187-1718221 35 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19192-19226 1 0.971
NZ_CP017542_3 3.7|1718187|35|NZ_CP017542|CRT,PILER-CR 1718187-1718221 35 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19017-19051 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 NC_008201 Mannheimia phage phiMHaA1, complete genome 18391-18425 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18466-18500 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18431-18465 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18627-18661 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18792-18826 1 0.971
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18391-18425 1 0.971
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 NC_008201 Mannheimia phage phiMHaA1, complete genome 18136-18171 1 0.972
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18136-18171 1 0.972
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18136-18171 1 0.972
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18336-18371 1 0.972
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18565-18600 1 0.972
NZ_CP017542_3 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR 1718586-1718621 36 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18136-18171 1 0.972
NZ_CP017542_1 1.1|915274|29|NZ_CP017542|CRISPRCasFinder 915274-915302 29 MH791397 UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome 22354-22382 5 0.828
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 NC_047750 Mannheimia phage vB_MhM_1127AP1, complete genome 19383-19416 6 0.824
NZ_CP017542_3 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder 1718521-1718554 34 NC_028898 Mannheimia phage vB_MhM_587AP1, complete genome 19392-19425 6 0.824
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 NC_047750 Mannheimia phage vB_MhM_1127AP1, complete genome 19383-19417 7 0.8
NZ_CP017542_3 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR 1718520-1718554 35 NC_028898 Mannheimia phage vB_MhM_587AP1, complete genome 19392-19426 7 0.8
NZ_CP017542_3 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder 1718587-1718621 35 HM144385 Brochothrix phage NF5, complete genome 32998-33032 10 0.714
NZ_CP017542_3 3.23|1718254|35|NZ_CP017542|CRISPRCasFinder 1718254-1718288 35 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 368774-368808 11 0.686
NZ_CP017542_3 3.25|1718387|34|NZ_CP017542|CRISPRCasFinder 1718387-1718420 34 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 710003-710036 11 0.676

1. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

2. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

3. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

4. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

5. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

6. spacer 2.1|1578400|59|NZ_CP017542|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

7. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

8. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

9. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

10. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

11. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

12. spacer 3.14|1718653|37|NZ_CP017542|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

13. spacer 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

14. spacer 3.19|1717985|37|NZ_CP017542|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

15. spacer 3.22|1718188|34|NZ_CP017542|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

16. spacer 3.22|1718188|34|NZ_CP017542|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

17. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

18. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

19. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

20. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

21. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

22. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcattgcaccacggtaacaacggctgctg	Protospacer
**********************************

23. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

24. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

25. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

26. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

27. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

28. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
gcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
***********************************

29. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

30. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

31. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

32. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

33. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

34. spacer 3.29|1718654|36|NZ_CP017542|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

35. spacer 3.4|1717984|38|NZ_CP017542|CRT,PILER-CR matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

36. spacer 3.4|1717984|38|NZ_CP017542|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

37. spacer 3.7|1718187|35|NZ_CP017542|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

38. spacer 3.7|1718187|35|NZ_CP017542|CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

39. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

40. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

41. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

42. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

43. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

44. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcattgcaccacggtaacaacggctgctg	Protospacer
 **********************************

45. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

46. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

47. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

48. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

49. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

50. spacer 3.13|1718586|36|NZ_CP017542|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.972

ggcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
agcgtttatcagcatctgctcgtgttactgtgccac	Protospacer
.***********************************

51. spacer 1.1|915274|29|NZ_CP017542|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

agacctgatactaatctagggtataaaga	CRISPR spacer
aaacctcataataatctagggtataaggc	Protospacer
*.**** *** ***************.* 

52. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

53. spacer 3.27|1718521|34|NZ_CP017542|CRISPRCasFinder matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 6, identity: 0.824

cgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
cgcaagcactgcaccacggtagcaacggctagaa	Protospacer
********.************.********.  .

54. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

55. spacer 3.12|1718520|35|NZ_CP017542|CRT,PILER-CR matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 7, identity: 0.8

gcgcaagcattgcaccacggtaacaacggctgctg	CRISPR spacer
ccgcaagcactgcaccacggtagcaacggctagaa	Protospacer
 ********.************.********.  .

56. spacer 3.28|1718587|35|NZ_CP017542|CRISPRCasFinder matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 10, identity: 0.714

gcgtttatcagcatctgctcgtgttactgtgccac	CRISPR spacer
ataattatcaacatctggtcgtgttactggtcgat	Protospacer
... ******.****** ***********  * *.

57. spacer 3.23|1718254|35|NZ_CP017542|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

tttaattaataaaatagctttagctttagatttaa	CRISPR spacer
ccaatctaataaaataattttagctttagatcggg	Protospacer
.. * .**********..*************. ..

58. spacer 3.25|1718387|34|NZ_CP017542|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 11, identity: 0.676

tatcatttatcgcccgaaaaatccaaaaatcgca	CRISPR spacer
acaagcttatcgcccaaaaaatccaacaataaaa	Protospacer
    ..*********.********** *** . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 44690 : 52017 10 Mannheimia_phage(80.0%) transposase,tail NA
DBSCAN-SWA_2 575506 : 659439 92 Mannheimia_phage(17.02%) plate,transposase,tail,tRNA,head,protease NA
DBSCAN-SWA_3 915537 : 971502 59 Mannheimia_phage(26.67%) integrase,transposase attL 938374:938389|attR 972403:972418
DBSCAN-SWA_4 1071348 : 1078133 9 Mycobacterium_phage(16.67%) NA NA
DBSCAN-SWA_5 1158264 : 1175995 18 Staphylococcus_phage(28.57%) integrase,transposase attL 1158997:1159011|attR 1176870:1176884
DBSCAN-SWA_6 1272277 : 1371870 117 Mannheimia_phage(85.0%) transposase,tail,tRNA,terminase,integrase,capsid,protease attL 1272063:1272081|attR 1294208:1294226
DBSCAN-SWA_7 1550538 : 1642325 111 Mannheimia_phage(90.24%) plate,portal,transposase,tail,holin,tRNA,head,integrase,terminase,capsid attL 1634372:1634390|attR 1651141:1651159
DBSCAN-SWA_8 1647898 : 1736152 99 Mannheimia_phage(56.36%) portal,transposase,tail,holin,tRNA,terminase,integrase attL 1656434:1656467|attR 1679747:1679780
DBSCAN-SWA_9 1861515 : 1871832 14 Mannheimia_phage(50.0%) NA NA
DBSCAN-SWA_10 1875065 : 1882009 9 Mannheimia_phage(60.0%) tail NA
DBSCAN-SWA_11 2315221 : 2323376 12 Synechococcus_phage(16.67%) terminase,integrase attL 2318427:2318486|attR 2323792:2323865
DBSCAN-SWA_12 2514264 : 2559633 36 Mannheimia_phage(25.0%) tRNA,transposase,protease NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP017542.1|WP_006250250.1|1630522_1630753_+|hypothetical-protein 1630522_1630753_+ 76 aa aa NA NA NA 1550538-1642325 yes