CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042434	Arachidicoccus ginsenosidivorans strain Gsoil 809 chromosome, complete genome	4 crisprs	PD-DExK,RT,csa3,c2c10_CAS-V-U3,PrimPol,WYL,Cas14u_CAS-V,DEDDh,cas3,cas14i,cas6,cas7,cas1,cas2,cas14j	0	6	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042434_1

3980775-3984533

Unclear

Consensus_repeat	Method
GGCTTAATCGAACAATAGTTGAATTGAAAT	PILER-CR
GGCTTAATCGAACAATAGTTGAATTGAAAT	CRISPRCasFinder
GGCTTAATCGAACAATAGTTGAATTGAAAT	CRT
GGCTTAATCGAACAATAGTTGAATTGAAAT	PILER-CR

56 spacers

cas2,cas1,cas3,cas7,cas6

The CRISPR arrays of NZ_CP042434_1

>merge|NZ_CP042434|1|3980775-3984533|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GGCTTAATCGAACAATAGTTGAATTGAAATCATCACCTTCAACAGTCAAAGACGGCTCAGGTTGAGGCTTAATCGAACAATAGTTGAATTGAAATATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTATGGCTTAATCGAACAATAGTTGAATTGAAATTGATTAAACCTGTTTTATCATCACGTTTAGAAAAAGGCTTAATCGAACAATAGTTGAATTGAAATATAATAATCAAAACGATCAAACTTAGAAAACTTTTTGGCTTAATCGAACAATAGTTGAATTGAAATGTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTTGGCTTAATCGAACAATAGTTGAATTGAAATAAGAATCCGATTTGGAACAAAAAAATAATGAATAAAAGGCTTAATCGAACAATAGTTGAATTGAAATAAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTTGGCTTAATCGAACAATAGTTGAATTGAAATGATTGTAGTACACATACATTTGCAGCTCTTTGAGCCGGCTTAATCGAACAATAGTTGAATTGAAATTAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCCGGCTTAATCGAACAATAGTTGAATTGAAATGATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGAGGCTTAATCGAACAATAGTTGAATTGAAATTTATATAATTATCGCAGGGGAAAGGCGATACCGGGCGGGCTTAATCGAACAATAGTTGAATTGAAATATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTCGGCTTAATCGAACAATAGTTGAATTGAAATAGCTGAAGGATATCAAGGATCCAATAGATATCCTTGGCTTAATCGAACAATAGTTGAATTGAAATTGAAATGGCTTTCAATGTCATTCAGGGTTACCAGAGGCTTAATCGAACAATAGTTGAATTGAAATAATCTAACGTACGAGGGTCCGGAAAATACTCATCAAAGGCTTAATCGAACAATAGTTGAATTGAAATCCTATTAGTACGGAAGAAATTCCGTTTGATGATGTGGGCTTAATCGAACAATAGTTGAATTGAAATGCGAGAGTAAAACGATCACCAGGAACACATTCAGTAGGCTTAATCGAACAATAGTTGAATTGAAATTTATTAAACCTGTTTTATCATCACGTTTAGAAAAAGGCTTAATCGAACAATAGTTGAATTGAAATTTGATATATATGCGGTAGCGGTTGTCCGCCGAAACAGGCTTAATCAAACAATAGTTGAATTGAAATTTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTAGGCTTAATCGAACAATAGTTGAATTGAAATGAATTGTATCTCGATAGTCTTTGTATGGTTGCATAATGGCTTAATCGAACAATAGTTGAATTGAAATAGATTTTAAACATGAACAATTTCAAAGTAAAATTATCGGCTTAATCGAACAATAGTTGAATTGAAATTTAGGAGTACGACACCCAGGAACACAACACCTAAAACGGCTTAATCGAACAATAGTTGAATTGAAATAGAAAAGCAGATAATGAAGTATGGTCATTTAAACCGGGCTTAATCGAACAATAGTTGAATTGAAATGTAATTTTAAGACAATTAAACCCTAAGGGCTCAGTGGCTTAATCGAACAATAGTTGAATTGAAATTTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGTGGCTTAATCGAACAATAGTTGAATTGAAATTGAGAAGGGCACAAAGAAAAACGACAAAAAGACCACGGCTTAATCGAACAATAGTTGAATTGAAATTAAAAGGAAACCTCAACAGTCTTTGGACCAGAATCGGCTTAATCGAACAATAGTTGAATTGAAATTGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGGGGCTTAATCGAACAATAGTTGAATTGAAATATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTGGGCTTAATCGAACAATAGTTGAATTGAAATATCAAAAAGATTGTGATAATTGTATAAAATACTTTTGGCTTAATCGAACAATAGTTGAATTGAAATTTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCAGGCTTAATCGAACAATAGTTGAATTGAAATACTGTTTTGGGGCACTATTGAAAACGAATAAAATCGGCTTAATCGAACAATAGTTGAATTGAAATGACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTCGGCTTAATCGAACAATAGTTGAATTGAAATATGAAGAACTGGAGGAAATATTTGACTACGATAAATGGCTTAATCGAACAATAGTTGAATTGAAATATATTTCCTTTATACGATTCATCAGTTCAATATTATGGCTTAATCGAACAATAGTTGAATTGAAATGTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTGGGCTTAATCGAACAATAGTTGAATTGAAATTGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTGGGCTTAATCGAACAATAGTTGAATTGAAATGGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATGGGCTTAATCGAACAATAGTTGAATTGAAATCTGGGGGACCCAGTACCATCGAGATGCACATTAGCAGGCTTAATCGAACAATAGTTGAATTGAAATGATTTATCAACCGTATGAGTACTTTTAATAATATGAGGCTTAATCGAACAATAGTTGAATTGAAATCTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAAGGCTTAATCGAACAATAGTTGAATTGAAATTCAAATACCGGATTGACTTCAAATACTCAATTTGTTGGCTTAATCGAACAATAGTTGAATTGAAATCTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAAGGCTTAATCGAACAATAGTTGAATTGAAATTGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAAGGCTTAATCGAACAATAGTTGAATTGAAATTAAAAACCTGGGAATTGGGGTACTGAAATTTCTACTGGCTTAATCGAACAATAGTTGAATTGAAATCATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTTGGCTTAATCGAACAATAGTTGAATTGAAATGATAACAGCTGGAATTGGCAAACACCTCTCCAGGGCGGCTTAATCGAACAATAGTTGAATTGAAATTAATAAATACCAATATCTTTTCATAATTTTTATTTTAGGCTTAATCGAACCATAGTGGAATTACTGGCTTAATCGAACAATAGTTGAATTGAAATGGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCAGGCTTAATCGAACAATAGTTGAATTGAAATAAATCTTAAAACTCTAAATTAAAAGATCATGACAAAGGCTTAATCGAACAATAGTTGAATTGAAATCCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCTGGCTTAATCGAACAATAGTTGAATTGAAATATTGGTATTGTAAGTCTTTATAGCGAATAAATCAAGGCTTAATCGAACAATAGTTGAATTGAAATGCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGCGGCTTAATCGAACAATAGTTGAATTGAAATGTGTCTTTATTGTAGGGGATCTTTGTTTGGGGGGCTTAATCGAACAATAGTTGAATTGAAATAAGAGAAAATAAATTGCAGTGATCTTATAATAGTTCTGGCTTAATCGAACAATAGTTGAATTAATTTT

>NZ_CP042434|1|1|3980775-3983913|PILER-CR
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATCACCTTCAACAGTCAAAGACGGCTCAGGTTGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATAATAATCAAAACGATCAAACTTAGAAAACTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAATCCGATTTGGAACAAAAAAATAATGAATAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTGTAGTACACATACATTTGCAGCTCTTTGAGCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATATAATTATCGCAGGGGAAAGGCGATACCGGGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGCTGAAGGATATCAAGGATCCAATAGATATCCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAAATGGCTTTCAATGTCATTCAGGGTTACCAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATCTAACGTACGAGGGTCCGGAAAATACTCATCAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGTACGGAAGAAATTCCGTTTGATGATGTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCGAGAGTAAAACGATCACCAGGAACACATTCAGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGATATATATGCGGTAGCGGTTGTCCGCCGAAACA
GGCTTAATCAAACAATAGTTGAATTGAAAT	TTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GAATTGTATCTCGATAGTCTTTGTATGGTTGCATAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGATTTTAAACATGAACAATTTCAAAGTAAAATTATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGGAGTACGACACCCAGGAACACAACACCTAAAAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGAAAAGCAGATAATGAAGTATGGTCATTTAAACCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTAATTTTAAGACAATTAAACCCTAAGGGCTCAGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAGAAGGGCACAAAGAAAAACGACAAAAAGACCAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAGGAAACCTCAACAGTCTTTGGACCAGAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCAAAAAGATTGTGATAATTGTATAAAATACTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ACTGTTTTGGGGCACTATTGAAAACGAATAAAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAACTGGAGGAAATATTTGACTACGATAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATATTTCCTTTATACGATTCATCAGTTCAATATTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGGGGGACCCAGTACCATCGAGATGCACATTAGCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTTATCAACCGTATGAGTACTTTTAATAATATGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TCAAATACCGGATTGACTTCAAATACTCAATTTGTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAACCTGGGAATTGGGGTACTGAAATTTCTACT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAATGATAACAGCTGGAATTGGCAAACACCTCTCCAGGGCGGCTTAATCGAACAATAGTTGAATTGAAATTAATAAATACCAATATCTTTTCATAATTTTTATTTTAGGCTTAATCGAACCATAGTGGAATTACTGGCTTAATCGAACAATAGTTGAATTGAAAT	GGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAATCTTAAAACTCTAAATTAAAAGATCATGACAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTGGTATTGTAAGTCTTTATAGCGAATAAATCAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGTCTTTATTGTAGGGGATCTTTGTTTGGGG


>NZ_CP042434|1|1|3980775-3984533|CRISPRCasFinder
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATCACCTTCAACAGTCAAAGACGGCTCAGGTTGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATAATAATCAAAACGATCAAACTTAGAAAACTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAATCCGATTTGGAACAAAAAAATAATGAATAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTGTAGTACACATACATTTGCAGCTCTTTGAGCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATATAATTATCGCAGGGGAAAGGCGATACCGGGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGCTGAAGGATATCAAGGATCCAATAGATATCCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAAATGGCTTTCAATGTCATTCAGGGTTACCAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATCTAACGTACGAGGGTCCGGAAAATACTCATCAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGTACGGAAGAAATTCCGTTTGATGATGTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCGAGAGTAAAACGATCACCAGGAACACATTCAGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGATATATATGCGGTAGCGGTTGTCCGCCGAAACA
GGCTTAATCAAACAATAGTTGAATTGAAAT	TTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GAATTGTATCTCGATAGTCTTTGTATGGTTGCATAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGATTTTAAACATGAACAATTTCAAAGTAAAATTATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGGAGTACGACACCCAGGAACACAACACCTAAAAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGAAAAGCAGATAATGAAGTATGGTCATTTAAACCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTAATTTTAAGACAATTAAACCCTAAGGGCTCAGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAGAAGGGCACAAAGAAAAACGACAAAAAGACCAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAGGAAACCTCAACAGTCTTTGGACCAGAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCAAAAAGATTGTGATAATTGTATAAAATACTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ACTGTTTTGGGGCACTATTGAAAACGAATAAAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAACTGGAGGAAATATTTGACTACGATAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATATTTCCTTTATACGATTCATCAGTTCAATATTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGGGGGACCCAGTACCATCGAGATGCACATTAGCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTTATCAACCGTATGAGTACTTTTAATAATATGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TCAAATACCGGATTGACTTCAAATACTCAATTTGTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAACCTGGGAATTGGGGTACTGAAATTTCTACT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATAACAGCTGGAATTGGCAAACACCTCTCCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAATAAATACCAATATCTTTTCATAATTTTTATTTTA
GGCTTAATCGAACCATAGTGGAATTACTGG	CTTAATCGAACAATAGTTGAATTGAAATGGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAATCTTAAAACTCTAAATTAAAAGATCATGACAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTGGTATTGTAAGTCTTTATAGCGAATAAATCAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGTCTTTATTGTAGGGGATCTTTGTTTGGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAGAAAATAAATTGCAGTGATCTTATAATAGTTCT
GGCTTAATCGAACAATAGTTGAATTAATTTT

>NZ_CP042434|1|1|3980775-3984532|CRT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATCACCTTCAACAGTCAAAGACGGCTCAGGTTGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATAATAATCAAAACGATCAAACTTAGAAAACTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAATCCGATTTGGAACAAAAAAATAATGAATAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTGTAGTACACATACATTTGCAGCTCTTTGAGCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATATAATTATCGCAGGGGAAAGGCGATACCGGGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGCTGAAGGATATCAAGGATCCAATAGATATCCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAAATGGCTTTCAATGTCATTCAGGGTTACCAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATCTAACGTACGAGGGTCCGGAAAATACTCATCAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGTACGGAAGAAATTCCGTTTGATGATGTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCGAGAGTAAAACGATCACCAGGAACACATTCAGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGATATATATGCGGTAGCGGTTGTCCGCCGAAACA
GGCTTAATCAAACAATAGTTGAATTGAAAT	TTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GAATTGTATCTCGATAGTCTTTGTATGGTTGCATAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGATTTTAAACATGAACAATTTCAAAGTAAAATTATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGGAGTACGACACCCAGGAACACAACACCTAAAAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGAAAAGCAGATAATGAAGTATGGTCATTTAAACCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTAATTTTAAGACAATTAAACCCTAAGGGCTCAGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAGAAGGGCACAAAGAAAAACGACAAAAAGACCAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAGGAAACCTCAACAGTCTTTGGACCAGAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCAAAAAGATTGTGATAATTGTATAAAATACTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ACTGTTTTGGGGCACTATTGAAAACGAATAAAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAACTGGAGGAAATATTTGACTACGATAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATATTTCCTTTATACGATTCATCAGTTCAATATTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGGGGGACCCAGTACCATCGAGATGCACATTAGCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTTATCAACCGTATGAGTACTTTTAATAATATGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TCAAATACCGGATTGACTTCAAATACTCAATTTGTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAACCTGGGAATTGGGGTACTGAAATTTCTACT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATAACAGCTGGAATTGGCAAACACCTCTCCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAATAAATACCAATATCTTTTCATAATTTTTATTTTA
GGCTTAATCGAACCATAGTGGAATTACTGG	CTTAATCGAACAATAGTTGAATTGAAATGGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAATCTTAAAACTCTAAATTAAAAGATCATGACAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTGGTATTGTAAGTCTTTATAGCGAATAAATCAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGTCTTTATTGTAGGGGATCTTTGTTTGGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAGAAAATAAATTGCAGTGATCTTATAATAGTTCT
GGCTTAATCGAACAATAGTTGAATTAATTT

>NZ_CP042434|1|2|3984045-3984465|PILER-CR
	CATCACCTTCAACAGTCAAAGACGGCTCAGGTTGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTTATTGCCCAGGCTGTCAAAGACGTCTGTAGTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATAATAATCAAAACGATCAAACTTAGAAAACTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGGTATTGGGTTCTTGTTGGAACTCGTATTGCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGAATCCGATTTGGAACAAAAAAATAATGAATAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAGCGAGCATTCAGGTAGATGCCAACGAATCGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTGTAGTACACATACATTTGCAGCTCTTTGAGCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAGCGAAGCCGTCGGCACCAGGAAGTCTAAAAAATCC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATCTTGATTTCTTGCGATTTAGGGTCTTTAGCGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATATAATTATCGCAGGGGAAAGGCGATACCGGGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCTCCTCTGGAGAGAGGTTTCTGTGGCTCAGCTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGCTGAAGGATATCAAGGATCCAATAGATATCCTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAAATGGCTTTCAATGTCATTCAGGGTTACCAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATCTAACGTACGAGGGTCCGGAAAATACTCATCAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGTACGGAAGAAATTCCGTTTGATGATGTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCGAGAGTAAAACGATCACCAGGAACACATTCAGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTATTAAACCTGTTTTATCATCACGTTTAGAAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGATATATATGCGGTAGCGGTTGTCCGCCGAAACA
GGCTTAATCAAACAATAGTTGAATTGAAAT	TTATAAAAGGAGTTCGCTCGGTTGGAATACTTCTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GAATTGTATCTCGATAGTCTTTGTATGGTTGCATAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGATTTTAAACATGAACAATTTCAAAGTAAAATTATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGGAGTACGACACCCAGGAACACAACACCTAAAAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	AGAAAAGCAGATAATGAAGTATGGTCATTTAAACCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTAATTTTAAGACAATTAAACCCTAAGGGCTCAGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAGAGAATACCCCGTTTGTTGTAAGTTCAGATGTGT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAGAAGGGCACAAAGAAAAACGACAAAAAGACCAC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAGGAAACCTCAACAGTCTTTGGACCAGAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAGAGATCCAAGGCACACTGGAATCGTGGCCAGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAGCCAGCTTACACAAACATGGATAGGCTTCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATCAAAAAGATTGTGATAATTGTATAAAATACTTTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTAAAACCTAAAAAGAATGGCGGAGATAAAGTACCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	ACTGTTTTGGGGCACTATTGAAAACGAATAAAATC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GACTTGGTGGTGTTGCGGGTGCTGGTGTGGCTTTC
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATGAAGAACTGGAGGAAATATTTGACTACGATAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATATTTCCTTTATACGATTCATCAGTTCAATATTAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGAATTCTTCTTATTAATACCAAGCGCTTCGCGTTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGGAAAGACCTCTGGAGGTCAAAAGTGCACATCTG
GGCTTAATCGAACAATAGTTGAATTGAAAT	GGTATCGCTGGTTATATGTGGAATCAATGTCGGCGATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGGGGGACCCAGTACCATCGAGATGCACATTAGCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GATTTATCAACCGTATGAGTACTTTTAATAATATGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTGTATAAGCGGGAAAAGGAGATGCAAAAGCCAATAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TCAAATACCGGATTGACTTCAAATACTCAATTTGTT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTTTAGTAACTGGATGAATACAAAACCAGTTGCTGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGAATTATCTAGCCAATATTGGTAAGGCTGTCAAGGAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAAAACCTGGGAATTGGGGTACTGAAATTTCTACT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CATATTTCCCCATGCCTCCTTTAAAGGGATGGTTTTT
GGCTTAATCGAACAATAGTTGAATTGAAATGATAACAGCTGGAATTGGCAAACACCTCTCCAGGGCGGCTTAATCGAACAATAGTTGAATTGAAATTAATAAATACCAATATCTTTTCATAATTTTTATTTTAGGCTTAATCGAACCATAGTGGAATTACTGGCTTAATCGAACAATAGTTGAATTGAAAT	GGAAGAGAACGGTTTGGAGGATGCAGAGGATATTCA
GGCTTAATCGAACAATAGTTGAATTGAAAT	AAATCTTAAAACTCTAAATTAAAAGATCATGACAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCGAAAGCCGCATTATTAAAGGAAAAGCGGCTCCT
GGCTTAATCGAACAATAGTTGAATTGAAAT	ATTGGTATTGTAAGTCTTTATAGCGAATAAATCAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GCTTTCACCAGGGCAATGAGCTCGTTTCACCAGGGC
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTGTCTTTATTGTAGGGGATCTTTGTTTGGGG
GGCTTAATCGAACAATAGTTGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042434.1\|WP_146784424.1\|3989621_3990899_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP042434.1\|WP_146784413.1\|3980292_3980556_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP042434.1\|WP_146784410.1\|3979280_3980291_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP042434.1\|WP_146784392.1\|3970635_3971202_-\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
NZ_CP042434.1\|WP_146784418.1\|3987730_3989071_-\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP042434.1\|WP_158639579.1\|3975801_3976482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273860
NZ_CP042434.1\|WP_146788474.1\|3994067_3995558_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|378943
NZ_CP042434.1\|WP_146784429.1\|3991471_3991744_-\|DUF2089-family-protein	unknown	unknown	gnl\|CDD\|378280
NZ_CP042434.1\|WP_146784435.1\|3999304_4000498_-\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP042434.1\|WP_146784397.1\|3972706_3973309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784427.1\|3990906_3991467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784400.1\|3973356_3974772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784416.1\|3986729_3987452_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP042434.1\|WP_146784404.1\|3974780_3975809_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP042434.1\|WP_146784394.1\|3971613_3972393_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|187889
NZ_CP042434.1\|WP_146788477.1\|3995659_3998980_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP042434.1\|WP_146784432.1\|3992981_3993857_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP042434.1\|WP_146784421.1\|3989207_3989561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784390.1\|3969200_3970160_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP042434.1\|WP_158639580.1\|3976474_3978775_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707

Protein	Function_ID	Function_description	E-value
NZ_CP042434.1\|WP_146784424.1\|3989621_3990899_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	2.99696e-13
NZ_CP042434.1\|WP_146784413.1\|3980292_3980556_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.53671e-27
NZ_CP042434.1\|WP_146784418.1\|3987730_3989071_-\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP042434.1\|WP_146784390.1\|3969200_3970160_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.82268e-171
NZ_CP042434.1\|WP_158639579.1\|3975801_3976482_+\|hypothetical-protein	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.55974e-14
NZ_CP042434.1\|WP_146788474.1\|3994067_3995558_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|378943	pfam12771, SusD-like_2, Starch-binding associating with outer membrane. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	3.67019e-59
NZ_CP042434.1\|WP_146784429.1\|3991471_3991744_-\|DUF2089-family-protein	gnl\|CDD\|378280	pfam09862, DUF2089, Protein of unknown function (DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.	2.3841e-24
NZ_CP042434.1\|WP_146784435.1\|3999304_4000498_-\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	7.84659e-30
NZ_CP042434.1\|WP_146784392.1\|3970635_3971202_-\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	1.30827e-119
NZ_CP042434.1\|WP_146784416.1\|3986729_3987452_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.78796e-09
NZ_CP042434.1\|WP_146784404.1\|3974780_3975809_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.99582e-37
NZ_CP042434.1\|WP_146784394.1\|3971613_3972393_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.46857e-17
NZ_CP042434.1\|WP_146784410.1\|3979280_3980291_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.9511e-157
NZ_CP042434.1\|WP_146788477.1\|3995659_3998980_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	2.36311e-134
NZ_CP042434.1\|WP_146784432.1\|3992981_3993857_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.75331e-93
NZ_CP042434.1\|WP_158639580.1\|3976474_3978775_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	4.70058e-52

>NZ_CP042434.1|WP_146784413.1|3980292_3980556_+|CRISPR-associated-endonuclease-Cas2
MYVILVYDIGEERVGKMLKLCRRYLNWIQNSVFEGEISEVKLKELQFLAKSIMVLSYDSIVIFKSRNEKWLQKEIIGKEKNELDIFL
>NZ_CP042434.1|WP_146784410.1|3979280_3980291_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MINEKTYYLFNAGRLSRKDNTLKFTAIDQDGVEGSIRYIPIESVSDLFCFGALDANASLFNFLGKQQIAVHFFDFYEHYTGSFLPKEYLLAGKMQIEQTRHYISKGKRIVIASKFIEGASANILKNLRYYQSRGKDLQSIIESIEKFSGQIKSVVEIDELMGIEGNIRQKYYESFDLIINDFSMGGRSKQPPSNEINSLISFGNMMCYSLCLGQIYHTQMNPTISFLHEPGFRRFSLALDLSEIFKPILVDRVIFKVLNKREIQAKDFDFQGNKVLLKDASRKIFVRAFEERLNETIRHRSLNRNVSYKHLVKLECYKLTKHILGMEEYKPFKIWW
>NZ_CP042434.1|WP_158639580.1|3976474_3978775_+|CRISPR-associated-helicase-Cas3'
MNKDYFDKFFAKSDGVTTLEMHTRHVLKAGENLLNSISLSESERDFWHKKLVRCAVLHDLGKIHREFVERLKGQKGGTIRHELVSLIFCYSFLNLSDDELFAIGTHHKGVIDYHLSDSQCLSPNYLRSYLNDWVKSDKSIFTPEVVQCWLDLFELNVIANFNREVTTDLSKNFKKCFYAKRQVEALPDFESRKNLSLMRALLMSADHLGSARKENEIPVYRPIELIHFQPQKEGAYFDFRPFQKRMRRENSDVILHAPTGSGKTEAALNWVFANQSVNNRVFYILPNTASINAMVGRLQRVFAKETVTPLHSKTLDFFYNLISDDLQSLNMDCSDIEREARSRQSLTREIFYPVKVATLHQVLKTSLKGKGWELALFDYRNALFIIDEFHAYNALLTGMLLASVKLFKKIFNAKFLFLSATIPEFLLRLIIKEVFDGDSSKLIRPDSRDELDRVIMDRKRHQLYCRPESNLFGDLSLIKSYLKDGNTVLIVVNNVRTAQKLYEELEFSSSSKLLHGGLNKKDRNNIEKDLLSRDVNKRPKLLIATQAVEVSLDIDYDVTFIENAPIDALIQRLGRVNRNGKKKIYPLDSKRDLCFDTVPVYIFEKSIGNISFYNREVVENTWSELIKYDGCELGEDDFIKICDVVYKDGYNRDQLQDFELGYNNTIINKFEDDWIAGNWKDWIKDILEHGNQKVEVLCFNLLDEYELKISEKKFLEANSLLVQVYRSEADISPIRKFGDVMVANNLNYKQEIGYFDENDSVDTQIL
>NZ_CP042434.1|WP_158639579.1|3975801_3976482_+|hypothetical-protein
MDKVLEIQFSGWTSTPRLPFVLSGNAICMPTPSYSLVLGIIGCCLGRNILATELKLGFKYSFDTVAKDLETRQRLENNGGKIKKHSKGSDAYLREFHVLPKLIVWLNKVEWKEFFENPIGTPSLGRSQDILCIDSVLLKDVERVDKGNLGGSLLPFSPSLNAAGQLVQLAESYIENEDVGTGRTPAASKMFISIPHDNNSEVVCGNLFRTKEEEPVYFYLHEFDNE
>NZ_CP042434.1|WP_146784404.1|3974780_3975809_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAKLNNISGALLIDATASFLNGAGLGIQEDKNRVIPKTFKEKVNNRFEDVPYVSGQSWRRWLRNTANEENNWSPSELRAIGDGSEKGTTNKISTELNPIEFPEDDLFGYMKAGAKGEESIQRTSPFKSSILKGIKNMRTLNIDEAFVHLKEGSPLPYSSKFYSTHLEGFFNLEYYRLGVYDNLGSKQELSSDLIKEHTDKLIETSLGGKFSRYELKNAVENRNVNAAGLLKGLAYLRGGAKQAAFGADVSPKVLVLAGMESANPIFNNLFIGTGERPILNVELMLELAEDYKMKLATPIFLGFRKGYLQNETEILEKLKDGFVLGSPVEVTNQFIQKYLTNG
>NZ_CP042434.1|WP_146784400.1|3973356_3974772_+|hypothetical-protein
MAVLAEKMQHCSVNEPIENVRDFGKGDYLIKVLQMLEELEEFEENYADLNMWSFSNSGTGASCSIDRVPNGLIRKLQHLYNNAKIGGELKAILADKHRAFRFLESLEGNKDWSLLYPNVFGTGKRKTDYSGVSTEFLEAYYSEIGNNRMVPIAKYIAGLIETYRSNSFKKLLERSLTGAWDNPEYRGELNLVLVKAAKEGRWDLKHHIAILDNSDELPVKNNFYKLHKLIHYFTQKSVFQNDLPIVDVSNKKAFNASQWVISMIQRDDKLDGIKSGLTNKGEDYIIGYGRIFIDSLNYQEVHFESILDTFYDVDFRYQKYGMTGLLRIFFNQSEYESIELEHYENKGQIMANVQCWLEKLGCFVNDYRAYYITRYQNPDSDKPPVEKFEKLVNGLVGERYKDDFYIKLKEIIFNTNQFIYEFQDGPKEKWDIEELKVDPLGNPSWNLCNFAIRFLLKKSLMELKKIINNKK
>NZ_CP042434.1|WP_146784397.1|3972706_3973309_+|hypothetical-protein
MTIFNRFTGNALINNALMTIMAVAKIGGLAEITPELLLDLFNRVSLVETNKRLKSYTMLFSLNNPLVNPAKKANQAGEKTYIRLLLAIMNGFEADGERICEITGLKFNKRFEEFYQEDIDQQKLLINSSSKDPREIKKEIKNLDNTDTSLNRSWFPLIGGLGSDAQTLPQAKFTVNIHPICIAILQFYPYLHYYTKEAFC
>NZ_CP042434.1|WP_146784394.1|3971613_3972393_+|CRISPR-associated-endoribonuclease-Cas6
MMLRLNLVADRNSLIPINYNYNLSAAIYRIIAKGDADFAELLHKRGYGKGFKFFTFSLIDAPFEVLGDRLKLVGNHASVLVSFHVPEAMENFIKGLFQSEQLVIEDYKSKSSFFVESISIEKNLLESYKDDERIEVELSPKSPIVAGLQNDLGNYIFLSPDDDRYVNSLIYNWTNKIKTIEQNEQVSQLSMKLISTNRPFKSKLITIKANTPQETKIRGWLNFKLIVKAEKRYVNLLQNTGVGIYNSMGMGCVQTKVNI
>NZ_CP042434.1|WP_146784392.1|3970635_3971202_-|DUF4256-domain-containing-protein
METKTNQLTNKDIDSLLLLLKVRFEQNKHRHPGIIWEDVSKRLLKHPEKLWSLQKMDESGGEPDVLEIDKKAEAYQFFDCSSETPKGRRSLCYDKKALAERKEHKPKGSAKEMAAAMGIQLLNEEQYRLLQSLEPVDLKTSSWIQTPDSVRELGGALFCDRRYDQVFVYHNGAISYYAARGFRGVLTF
>NZ_CP042434.1|WP_146784390.1|3969200_3970160_+|signal-recognition-particle-docking-protein-FtsY
MGFFGNLFGKKEKETLDQGLEKTKDNFLSKITKAVAGKTTVDDEVLDNLEDALITADVGVDTTLEIVDRVQKRVAKDKYVTTSELNRLLQEEIEALLPDVKEENFGSFELTGIKKPYVLLVVGVNGVGKTTTIGKLAARYKAAGNSVVLGAADTFRAAAVDQLTIWSERVGVPIVKQPMGSDPASVAFDTVQSAVAKNADIAIIDTAGRLHNKVHLMDELNKIKRVIEKVVPGGPSDVLLVLDGSTGQNALEQAKQFTETTNVSSLAITKLDGTAKGGVVLAIAHQLNIPVRYIGVGERVEDLMIFDKHEFVDSLFKLH
>NZ_CP042434.1|WP_146784416.1|3986729_3987452_+|outer-membrane-beta-barrel-protein
MMNNKPIHMQIKKLLSILVVLVITGTCFGQVRWAVKAGLNYSNISAEDKDEVKANTKSVPGIYLGLGADIVMANQFSLQPTLIYAKRGFKQSGPSNVGWGKDFEARVSYFELPIDFLYSPRIGPGNLLLGAGPYLGYGTGGSWTTSGPVIVGDIVYDAKGDISFQNDNSTRGEGTNSFTYAKPWDYGAHFKLGYALLDRYIVSFEAQYGVANLTPNWGDLKAQGSLRNKSFGISLGYRFE
>NZ_CP042434.1|WP_146784418.1|3987730_3989071_-|NADP-specific-glutamate-dehydrogenase
MNENLNNFLSNLKKKNPGEPEFLQAVEEVATSIISFIESEPRYKNTKILERMVEPERVIIFRVPWLDDKGEVQVNRGFRVQMNSAIGPYKGGLRFHPSVTLSVLKFLAFEQIFKNSLTGLPMGAGKGGSDFDPKGKSDNEVMKFCQSFMTELYRHVGEDTDIPAGDIGVGNREIGFLFGQYKRIAGSFNGVLTGKGNEWGGSHIRPEATGYGLIYFVDEILKTKNESIKGKTVIISGSGNVAQYAAEKCIQNGAKVLTLSDSHGFVYDPNGIDNEKLAFIKHLKNDEHGSIKEYATKFGCEYFEGERPWRIKCDIALPNATQNELNEEDAQLLVKNGCICVAEGANMPCTPEAVAIFLKAKIFYAPGKAANAGGVAVSGLEMSQNSQRYSWTRAEVDMKLKSIMHEIHEQCMKYGKEADGYINYERGANISGFVKVADAMLAQGIV
>NZ_CP042434.1|WP_146784421.1|3989207_3989561_-|hypothetical-protein
MKKIIKLFVVMAAFSSCTGIMITRNVNPSGSVIIGPNQQTRRKVVIKNKSKNQITASTFKNGKESSKIILPAKRKRSIYLENDSKIEVNNNQQVPAKIKITVPGLPVVNISSGKGGK
>NZ_CP042434.1|WP_146784424.1|3989621_3990899_-|alpha/beta-fold-hydrolase
MKRNLLLAILLIPFIGLCQTPKQIAKAFVEAIFNKQYDTAISYIDSSIQNKMPPVLLGQITNSMVQKNGDFKKVVDVNQQQAGGYLNCIVNTVFEKNSELIRTVFNSNNKIIGFFLVPHRKNQETDDAPNAYNIKSGNLTLPGTLLIAKDNNQKKLVILVHGSGANDRDETLGQLKPFKDLAQGLLKAGISTYRYDKRTFVAPKSLPKNFTVDDVVTNDVLNIIHYFNNNDTFQNYKLYVIGHSLGAFMAPRIAKKAKGVVNGVVMMAGPARPIQDLILEQLTYLDSLTPSKELDEKLKEVKRQIHYMHGKAFNQNSPSDSLLSKQQASFWLSFNAYKPLEVIKSINTPFLILQGEKDYQVRMADFNLWKRATKGMSNISFKSYPGLSHLFMQSNGTPSPKDYEGEKHIPSQVINDIASWIKKNG
>NZ_CP042434.1|WP_146784427.1|3990906_3991467_-|hypothetical-protein
MVFIFNPFTKIAGGKALWIGGLFAILTLAISYFSHSAFDGVIDFHVAPFTSIWPYVSFYIISWLCLVLFLGLTGLLFTKTRFRWIDILGTTLLSRAPLLLVALAAFAIPYIDKEQLSDITQIHFTAGFFIASFFSLICIIWTVALYYNSYRVCINIYGSKAVWTFILALILAEITSLVFIHSIHFK
>NZ_CP042434.1|WP_146784429.1|3991471_3991744_-|DUF2089-family-protein
MEKRLPIYCPSCNSFLDVEAMSCHHCHTKVVGDYKLPPIMLLPEEDQKFMLDFVKASGSIKLMAEQMSLSYPTVRNILDSVIEKIKNLEN
>NZ_CP042434.1|WP_146784432.1|3992981_3993857_-|SDR-family-NAD(P)-dependent-oxidoreductase
MESKVWFITGSSKGLGKSLTLAILNKGDQVIATARRLSDLDYLDDYPAVNILKLKLDVKDTKKIHQAVSMGIDHFGQIDVLVNNAGFGITGAAESFSDDQVRDQLETNLYAPIELSRAVIPHMRRQGSGHILQISSIGGRVASTGLSIYQAAKFGLSGFSEALHKEVAPLGITVMAIEPGGIKTEWSGSSMSYADSPEVYHAVQSRISFFKNGNFVPVGDPDKMATVLMDLIDHPQPPVHLVLGSDAVGILQNGLSVRTEELKQWLSVSVSTDADQDEQINFIENQPWAVK
>NZ_CP042434.1|WP_146788474.1|3994067_3995558_-|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MVLVGLFSCNKFDEINSDPNTPTEASASLLCTSAILSVARFNGRDAKAYITENALAKYVGYANEGQLAEQYNLLGSGSFSAMTILPDLDKMLKYAKDGPMENAYKGVAAFVKAYMFYQLTMQMGDIPCSEANGGVNGEFQPKYDTQKQVFITILDDLKAADAFFAEGTNFSGDPTPYNGDPAKWRAASNSFALKVLMTLSKKVGDADLSIKARFKSIVDAGHLLENTGEYFGLDYSTQNKHPLSGTNDLFTSRTILSSLLVDNLKQLNDRRLFYYGDPAGAQISSGQSENNMNAYIGVDVSMDYPAMNAGHSANKYSLINSRYLKEEASEPRMLITYGEQELILAEARVLGWISSGDAKSYYENGVKSALEELMNTDPSYAHGMAINQDYIDHYFTGEAAFKTTQSEQLKQIWMQRYIREFMKDGLSSYFEYRRNKYPVFPINPATSLNANDVGAIPMRWLYPSTETDYNRANLIEALDRQFDGYDEINKIMWLLK
>NZ_CP042434.1|WP_146788477.1|3995659_3998980_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKAQRITLHEHEAPLTKIFKAIRQQSAYNFLYADDALNGTTPVSISVKNKDVKAVLDKIFQQQPISYTITDNTIIIKRKAVYPAQTTAALAAIQQLEIQGIVNDELGNPIAGASVIIKRTGRGAITNDRGAFRLQVEQGDVLTITYIGKQAREINIQEGKSDYTITLMDEQRELQQIVVTALGIKRESKALGYSVQTVQGDDLQTVKGVDVGTSLTGRVAGLLVKNSTEFTQAPDIQLRGENPLLVIDGVPYGNMTLRDIAPDDIQSITVLKGATASALYGFRGAGGAIMVTTKKGTNKNGLSVTVNSSSMFTAGFLAIPKMQSTYGRVVNTATNTYARTGDGAWGVPMEGQPVIQWDPISKSMKEMPYLPVGKNNFRNFLDQGYVLNNNIQVIQQGELGSFHASASWVENKGQYPNSKYSKLRYSIGGDIKLDKFTLSTTLSYNKQSSPNIGFSGYTGYDPMYSMLVWSAPDYDIRQYKDYWLIKNEVQNSSYTAGINNPYFDRYERIHNVNRDIFNGSLELNYDFTPWLKGTFRTGYDTYSDKQEIRISEGSFQGAGASTVIPGGTEVWGESARGSFNTGLSRGYSTNNDLLLTAKFKEGDFKIDGFVGGTIYYRQDEGIEALTQGGLSVPAFYSLKASINPAKVNSVTKKQQVNSIYGRGAVSWKDMLFAEATLRNDWSSTLPSSTRSYLYPSVSGSFVASELLPKSGWLNFWKWRGSWTSSKTPADIYSINTVYGITNNSWGDLSSALLPTTIRGANVHPESSSTFEVGTEASMFGNLLSVDISYYDKRMYDFLKSTGISAASGYAANYINIQEEISRRGWEVFTKITPVKTKDWRWDVTLNWSTYARYYTKLDPQFSADKPWVKVGQRVDAYILRDYQKDPEGNIIHSNGLPLYSNYDSRYGYSDPDWIWGAETSLRYKNWSFSIALDGRSGGLAQTTTEMYMWLSGNHPGSVTPERYLDATNPGSKNYIGQGVKVVSGEATYDTYGNITSDTRKYAPNDVPVTYKDYISKLHKGTAWGGAAAPVDVYSTTFFKIREVSLTYSLPKSVYDKIHAKGFSVSAIGQNVFMWAKQFKYSDPDGGVENFSDPSQRFIGLNIKVNF
>NZ_CP042434.1|WP_146784435.1|3999304_4000498_-|DUF4974-domain-containing-protein
MEIPQHILDLIEKYLAATISKEELIALNNWYHTHDDSQTTVEPLVSATQNDDQSSEEVISRRIYEKLLNRKDIQVPRKKISPWKNYAAAIALLISICGLGYFYLHQRSNTKNNAKVALQATSINADLAPGGNKARLTLADGSVVILDSLQNGSIAKQGGIDIQKLANGQLTYNRTNSAINATVVFNQISTPRGGTYRITLADGTKVWLNAASVLKYPTTFKGATREVVLKGEAYFEVAKNAAKPFLVHTAQQTVQVLGTHFDVNAYQDEPVTKTTLLEGRVKVIANHNADQQTILVPGQQSALHPSGKLTLNLHPDLEQVTGWKDGFFVFHSTDLKSILRLISRWYDADIEYKSPKNPVFTGQISKQLPVSKVFALLSLTNEVHYSIEGKTIIVTNK

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Crispr_ID: NZ_CP042434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042434_2

3985505-3986442

Unclear

Consensus_repeat	Method
GGCTTAATCGAACAATAGTTGAATTGAAAT	CRISPRCasFinder
GGCTTAATCGAACAATAGTTGAATTGAAAT	CRT
GGCTTAATCGAACAATAGTTGAATTGAAAT	PILER-CR

14 spacers

cas2,cas1,cas3,cas7,cas6

The CRISPR arrays of NZ_CP042434_2

>merge|NZ_CP042434|2|3985505-3986442|CRISPRCasFinder,CRT,PILER-CR
GGCTTAATCGAACAATAGTTGAATTGAAATCAATTTACCGTTGTCTGTCCTTTGGACTGCAAAGAGAGGCTTAATCGAACAATAGTTGAATTGAAATTAAATATAACGAGTGCTACCCAAAATACTATTTCAGTCTTAATCGAACAATAGTTGAATTGAAATACACTTTATATTAGTTTGTTCCTTATCGAACAATAGTTGAATTGAAATATCGTTTGACGGTATACTTTTCTCCGCCCAGATAGAGGCTTAATCGAACAATAGTTGAATTGAAATTGTTTTTAAGGCTTAATTCCTTGACGGCGGCAAATAGGCTTAATCGAACAATAGTTGAATTGAAATTTGCAATAGTTTGCTTTCACTTTCAGGCTGTATCATGGCTTAATCGAACAATAGTTGAATTGAAATTACGTTCGTATACACTATTTTTAGAAGCAGCCAACAGGCTTAATCGAACAATAGTTGAATTGAAATCTATTTAAAATAGAAACAATGAATAAGAATGCAAAAGGCTTAATCGAACAATAGTTGAATTGAAATTTTCCTGCGAACTTTTGCGCATAACCCGCTATCTGTAGGCTTAATCGAACAATAGTTGAATTGAAATGTCGTTTTCTTCAATTCCATACCGGAAAGTGTTTATGGGCTTAATCGAACAATAGTTGAATTGAAATCCCAATCAACGCAGGTAAAGGCATCTGAATTTAATGGCTTAATCGAACAATAGTTGAATTGAAATCCAGAAGTCACCCAGGATCAACAGAGCGCCGTAGCGGGCTTAATCGAACAATAGTTGAATTGAAATAATATACCGGACAAAAAGACGATTTCGGTAACGAAATGGCTTAATCGAACAATAGTTGAATTGAAATCCTATTAGCCGGCTGGATCTTTTGCAGGCAGTGGGCAGTTTAATCGAACAGTAGTTGTATAGAAAT

>NZ_CP042434|2|2|3985505-3986442|CRISPRCasFinder
GGCTTAATCGAACAATAGTTGAATTGAAAT	CAATTTACCGTTGTCTGTCCTTTGGACTGCAAAGAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAATATAACGAGTGCTACCCAAAATACTATTTCA
GTCTTAATCGAACAATAGTTGAATTGAAAT	ACACTTTATATTAGTTTG
TTCCTTATCGAACAATAGTTGAATTGAAAT	ATCGTTTGACGGTATACTTTTCTCCGCCCAGATAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGTTTTTAAGGCTTAATTCCTTGACGGCGGCAAATA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGCAATAGTTTGCTTTCACTTTCAGGCTGTATCAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TACGTTCGTATACACTATTTTTAGAAGCAGCCAACA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTATTTAAAATAGAAACAATGAATAAGAATGCAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTTCCTGCGAACTTTTGCGCATAACCCGCTATCTGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGTTTTCTTCAATTCCATACCGGAAAGTGTTTATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCAATCAACGCAGGTAAAGGCATCTGAATTTAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCAGAAGTCACCCAGGATCAACAGAGCGCCGTAGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATATACCGGACAAAAAGACGATTTCGGTAACGAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGCCGGCTGGATCTTTTGCAGGCAGTGGGC
AGTTTAATCGAACAGTAGTTGTATAGAAAT

>NZ_CP042434|2|2|3985505-3986442|CRT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CAATTTACCGTTGTCTGTCCTTTGGACTGCAAAGAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TAAATATAACGAGTGCTACCCAAAATACTATTTCA
GTCTTAATCGAACAATAGTTGAATTGAAAT	ACACTTTATATTAGTTTG
TTCCTTATCGAACAATAGTTGAATTGAAAT	ATCGTTTGACGGTATACTTTTCTCCGCCCAGATAGA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGTTTTTAAGGCTTAATTCCTTGACGGCGGCAAATA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGCAATAGTTTGCTTTCACTTTCAGGCTGTATCAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TACGTTCGTATACACTATTTTTAGAAGCAGCCAACA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTATTTAAAATAGAAACAATGAATAAGAATGCAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTTCCTGCGAACTTTTGCGCATAACCCGCTATCTGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGTTTTCTTCAATTCCATACCGGAAAGTGTTTATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCAATCAACGCAGGTAAAGGCATCTGAATTTAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCAGAAGTCACCCAGGATCAACAGAGCGCCGTAGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATATACCGGACAAAAAGACGATTTCGGTAACGAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCTATTAGCCGGCTGGATCTTTTGCAGGCAGTGGGC
AGTTTAATCGAACAGTAGTTGTATAGAAAT

>NZ_CP042434|2|3|3985751-3986376|PILER-CR
GGCTTAATCGAACAATAGTTGAATTGAAAT	TGTTTTTAAGGCTTAATTCCTTGACGGCGGCAAATA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTGCAATAGTTTGCTTTCACTTTCAGGCTGTATCAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	TACGTTCGTATACACTATTTTTAGAAGCAGCCAACA
GGCTTAATCGAACAATAGTTGAATTGAAAT	CTATTTAAAATAGAAACAATGAATAAGAATGCAAAA
GGCTTAATCGAACAATAGTTGAATTGAAAT	TTTCCTGCGAACTTTTGCGCATAACCCGCTATCTGTA
GGCTTAATCGAACAATAGTTGAATTGAAAT	GTCGTTTTCTTCAATTCCATACCGGAAAGTGTTTATG
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCCAATCAACGCAGGTAAAGGCATCTGAATTTAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT	CCAGAAGTCACCCAGGATCAACAGAGCGCCGTAGCG
GGCTTAATCGAACAATAGTTGAATTGAAAT	AATATACCGGACAAAAAGACGATTTCGGTAACGAAAT
GGCTTAATCGAACAATAGTTGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042434.1\|WP_146784424.1\|3989621_3990899_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP042434.1\|WP_146784413.1\|3980292_3980556_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP042434.1\|WP_146784410.1\|3979280_3980291_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP042434.1\|WP_146784392.1\|3970635_3971202_-\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
NZ_CP042434.1\|WP_146784418.1\|3987730_3989071_-\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_CP042434.1\|WP_158639579.1\|3975801_3976482_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273860
NZ_CP042434.1\|WP_146788474.1\|3994067_3995558_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl\|CDD\|378943
NZ_CP042434.1\|WP_146784429.1\|3991471_3991744_-\|DUF2089-family-protein	unknown	unknown	gnl\|CDD\|378280
NZ_CP042434.1\|WP_146784435.1\|3999304_4000498_-\|DUF4974-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NZ_CP042434.1\|WP_146784397.1\|3972706_3973309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784427.1\|3990906_3991467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784400.1\|3973356_3974772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784416.1\|3986729_3987452_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|372635
NZ_CP042434.1\|WP_146784404.1\|3974780_3975809_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP042434.1\|WP_146784394.1\|3971613_3972393_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09759_cas6_CAS-I-A	gnl\|CDD\|187889
NZ_CP042434.1\|WP_146788477.1\|3995659_3998980_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274948
NZ_CP042434.1\|WP_146784432.1\|3992981_3993857_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP042434.1\|WP_146784421.1\|3989207_3989561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146784390.1\|3969200_3970160_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP042434.1\|WP_158639580.1\|3976474_3978775_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707

Protein	Function_ID	Function_description	E-value
NZ_CP042434.1\|WP_146784424.1\|3989621_3990899_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	2.99696e-13
NZ_CP042434.1\|WP_146784413.1\|3980292_3980556_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.53671e-27
NZ_CP042434.1\|WP_146784418.1\|3987730_3989071_-\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_CP042434.1\|WP_146784390.1\|3969200_3970160_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.82268e-171
NZ_CP042434.1\|WP_158639579.1\|3975801_3976482_+\|hypothetical-protein	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.55974e-14
NZ_CP042434.1\|WP_146788474.1\|3994067_3995558_-\|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl\|CDD\|378943	pfam12771, SusD-like_2, Starch-binding associating with outer membrane. SusD is a secreted starch-binding protein with an N-terminal lipid tail that allows it to associate with the outer membrane.	3.67019e-59
NZ_CP042434.1\|WP_146784429.1\|3991471_3991744_-\|DUF2089-family-protein	gnl\|CDD\|378280	pfam09862, DUF2089, Protein of unknown function (DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.	2.3841e-24
NZ_CP042434.1\|WP_146784435.1\|3999304_4000498_-\|DUF4974-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	7.84659e-30
NZ_CP042434.1\|WP_146784392.1\|3970635_3971202_-\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	1.30827e-119
NZ_CP042434.1\|WP_146784416.1\|3986729_3987452_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	1.78796e-09
NZ_CP042434.1\|WP_146784404.1\|3974780_3975809_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.99582e-37
NZ_CP042434.1\|WP_146784394.1\|3971613_3972393_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187889	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.46857e-17
NZ_CP042434.1\|WP_146784410.1\|3979280_3980291_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.9511e-157
NZ_CP042434.1\|WP_146788477.1\|3995659_3998980_-\|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	2.36311e-134
NZ_CP042434.1\|WP_146784432.1\|3992981_3993857_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.75331e-93
NZ_CP042434.1\|WP_158639580.1\|3976474_3978775_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	4.70058e-52

>NZ_CP042434.1|WP_146784413.1|3980292_3980556_+|CRISPR-associated-endonuclease-Cas2
MYVILVYDIGEERVGKMLKLCRRYLNWIQNSVFEGEISEVKLKELQFLAKSIMVLSYDSIVIFKSRNEKWLQKEIIGKEKNELDIFL
>NZ_CP042434.1|WP_146784410.1|3979280_3980291_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MINEKTYYLFNAGRLSRKDNTLKFTAIDQDGVEGSIRYIPIESVSDLFCFGALDANASLFNFLGKQQIAVHFFDFYEHYTGSFLPKEYLLAGKMQIEQTRHYISKGKRIVIASKFIEGASANILKNLRYYQSRGKDLQSIIESIEKFSGQIKSVVEIDELMGIEGNIRQKYYESFDLIINDFSMGGRSKQPPSNEINSLISFGNMMCYSLCLGQIYHTQMNPTISFLHEPGFRRFSLALDLSEIFKPILVDRVIFKVLNKREIQAKDFDFQGNKVLLKDASRKIFVRAFEERLNETIRHRSLNRNVSYKHLVKLECYKLTKHILGMEEYKPFKIWW
>NZ_CP042434.1|WP_158639580.1|3976474_3978775_+|CRISPR-associated-helicase-Cas3'
MNKDYFDKFFAKSDGVTTLEMHTRHVLKAGENLLNSISLSESERDFWHKKLVRCAVLHDLGKIHREFVERLKGQKGGTIRHELVSLIFCYSFLNLSDDELFAIGTHHKGVIDYHLSDSQCLSPNYLRSYLNDWVKSDKSIFTPEVVQCWLDLFELNVIANFNREVTTDLSKNFKKCFYAKRQVEALPDFESRKNLSLMRALLMSADHLGSARKENEIPVYRPIELIHFQPQKEGAYFDFRPFQKRMRRENSDVILHAPTGSGKTEAALNWVFANQSVNNRVFYILPNTASINAMVGRLQRVFAKETVTPLHSKTLDFFYNLISDDLQSLNMDCSDIEREARSRQSLTREIFYPVKVATLHQVLKTSLKGKGWELALFDYRNALFIIDEFHAYNALLTGMLLASVKLFKKIFNAKFLFLSATIPEFLLRLIIKEVFDGDSSKLIRPDSRDELDRVIMDRKRHQLYCRPESNLFGDLSLIKSYLKDGNTVLIVVNNVRTAQKLYEELEFSSSSKLLHGGLNKKDRNNIEKDLLSRDVNKRPKLLIATQAVEVSLDIDYDVTFIENAPIDALIQRLGRVNRNGKKKIYPLDSKRDLCFDTVPVYIFEKSIGNISFYNREVVENTWSELIKYDGCELGEDDFIKICDVVYKDGYNRDQLQDFELGYNNTIINKFEDDWIAGNWKDWIKDILEHGNQKVEVLCFNLLDEYELKISEKKFLEANSLLVQVYRSEADISPIRKFGDVMVANNLNYKQEIGYFDENDSVDTQIL
>NZ_CP042434.1|WP_158639579.1|3975801_3976482_+|hypothetical-protein
MDKVLEIQFSGWTSTPRLPFVLSGNAICMPTPSYSLVLGIIGCCLGRNILATELKLGFKYSFDTVAKDLETRQRLENNGGKIKKHSKGSDAYLREFHVLPKLIVWLNKVEWKEFFENPIGTPSLGRSQDILCIDSVLLKDVERVDKGNLGGSLLPFSPSLNAAGQLVQLAESYIENEDVGTGRTPAASKMFISIPHDNNSEVVCGNLFRTKEEEPVYFYLHEFDNE
>NZ_CP042434.1|WP_146784404.1|3974780_3975809_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAKLNNISGALLIDATASFLNGAGLGIQEDKNRVIPKTFKEKVNNRFEDVPYVSGQSWRRWLRNTANEENNWSPSELRAIGDGSEKGTTNKISTELNPIEFPEDDLFGYMKAGAKGEESIQRTSPFKSSILKGIKNMRTLNIDEAFVHLKEGSPLPYSSKFYSTHLEGFFNLEYYRLGVYDNLGSKQELSSDLIKEHTDKLIETSLGGKFSRYELKNAVENRNVNAAGLLKGLAYLRGGAKQAAFGADVSPKVLVLAGMESANPIFNNLFIGTGERPILNVELMLELAEDYKMKLATPIFLGFRKGYLQNETEILEKLKDGFVLGSPVEVTNQFIQKYLTNG
>NZ_CP042434.1|WP_146784400.1|3973356_3974772_+|hypothetical-protein
MAVLAEKMQHCSVNEPIENVRDFGKGDYLIKVLQMLEELEEFEENYADLNMWSFSNSGTGASCSIDRVPNGLIRKLQHLYNNAKIGGELKAILADKHRAFRFLESLEGNKDWSLLYPNVFGTGKRKTDYSGVSTEFLEAYYSEIGNNRMVPIAKYIAGLIETYRSNSFKKLLERSLTGAWDNPEYRGELNLVLVKAAKEGRWDLKHHIAILDNSDELPVKNNFYKLHKLIHYFTQKSVFQNDLPIVDVSNKKAFNASQWVISMIQRDDKLDGIKSGLTNKGEDYIIGYGRIFIDSLNYQEVHFESILDTFYDVDFRYQKYGMTGLLRIFFNQSEYESIELEHYENKGQIMANVQCWLEKLGCFVNDYRAYYITRYQNPDSDKPPVEKFEKLVNGLVGERYKDDFYIKLKEIIFNTNQFIYEFQDGPKEKWDIEELKVDPLGNPSWNLCNFAIRFLLKKSLMELKKIINNKK
>NZ_CP042434.1|WP_146784397.1|3972706_3973309_+|hypothetical-protein
MTIFNRFTGNALINNALMTIMAVAKIGGLAEITPELLLDLFNRVSLVETNKRLKSYTMLFSLNNPLVNPAKKANQAGEKTYIRLLLAIMNGFEADGERICEITGLKFNKRFEEFYQEDIDQQKLLINSSSKDPREIKKEIKNLDNTDTSLNRSWFPLIGGLGSDAQTLPQAKFTVNIHPICIAILQFYPYLHYYTKEAFC
>NZ_CP042434.1|WP_146784394.1|3971613_3972393_+|CRISPR-associated-endoribonuclease-Cas6
MMLRLNLVADRNSLIPINYNYNLSAAIYRIIAKGDADFAELLHKRGYGKGFKFFTFSLIDAPFEVLGDRLKLVGNHASVLVSFHVPEAMENFIKGLFQSEQLVIEDYKSKSSFFVESISIEKNLLESYKDDERIEVELSPKSPIVAGLQNDLGNYIFLSPDDDRYVNSLIYNWTNKIKTIEQNEQVSQLSMKLISTNRPFKSKLITIKANTPQETKIRGWLNFKLIVKAEKRYVNLLQNTGVGIYNSMGMGCVQTKVNI
>NZ_CP042434.1|WP_146784392.1|3970635_3971202_-|DUF4256-domain-containing-protein
METKTNQLTNKDIDSLLLLLKVRFEQNKHRHPGIIWEDVSKRLLKHPEKLWSLQKMDESGGEPDVLEIDKKAEAYQFFDCSSETPKGRRSLCYDKKALAERKEHKPKGSAKEMAAAMGIQLLNEEQYRLLQSLEPVDLKTSSWIQTPDSVRELGGALFCDRRYDQVFVYHNGAISYYAARGFRGVLTF
>NZ_CP042434.1|WP_146784390.1|3969200_3970160_+|signal-recognition-particle-docking-protein-FtsY
MGFFGNLFGKKEKETLDQGLEKTKDNFLSKITKAVAGKTTVDDEVLDNLEDALITADVGVDTTLEIVDRVQKRVAKDKYVTTSELNRLLQEEIEALLPDVKEENFGSFELTGIKKPYVLLVVGVNGVGKTTTIGKLAARYKAAGNSVVLGAADTFRAAAVDQLTIWSERVGVPIVKQPMGSDPASVAFDTVQSAVAKNADIAIIDTAGRLHNKVHLMDELNKIKRVIEKVVPGGPSDVLLVLDGSTGQNALEQAKQFTETTNVSSLAITKLDGTAKGGVVLAIAHQLNIPVRYIGVGERVEDLMIFDKHEFVDSLFKLH
>NZ_CP042434.1|WP_146784416.1|3986729_3987452_+|outer-membrane-beta-barrel-protein
MMNNKPIHMQIKKLLSILVVLVITGTCFGQVRWAVKAGLNYSNISAEDKDEVKANTKSVPGIYLGLGADIVMANQFSLQPTLIYAKRGFKQSGPSNVGWGKDFEARVSYFELPIDFLYSPRIGPGNLLLGAGPYLGYGTGGSWTTSGPVIVGDIVYDAKGDISFQNDNSTRGEGTNSFTYAKPWDYGAHFKLGYALLDRYIVSFEAQYGVANLTPNWGDLKAQGSLRNKSFGISLGYRFE
>NZ_CP042434.1|WP_146784418.1|3987730_3989071_-|NADP-specific-glutamate-dehydrogenase
MNENLNNFLSNLKKKNPGEPEFLQAVEEVATSIISFIESEPRYKNTKILERMVEPERVIIFRVPWLDDKGEVQVNRGFRVQMNSAIGPYKGGLRFHPSVTLSVLKFLAFEQIFKNSLTGLPMGAGKGGSDFDPKGKSDNEVMKFCQSFMTELYRHVGEDTDIPAGDIGVGNREIGFLFGQYKRIAGSFNGVLTGKGNEWGGSHIRPEATGYGLIYFVDEILKTKNESIKGKTVIISGSGNVAQYAAEKCIQNGAKVLTLSDSHGFVYDPNGIDNEKLAFIKHLKNDEHGSIKEYATKFGCEYFEGERPWRIKCDIALPNATQNELNEEDAQLLVKNGCICVAEGANMPCTPEAVAIFLKAKIFYAPGKAANAGGVAVSGLEMSQNSQRYSWTRAEVDMKLKSIMHEIHEQCMKYGKEADGYINYERGANISGFVKVADAMLAQGIV
>NZ_CP042434.1|WP_146784421.1|3989207_3989561_-|hypothetical-protein
MKKIIKLFVVMAAFSSCTGIMITRNVNPSGSVIIGPNQQTRRKVVIKNKSKNQITASTFKNGKESSKIILPAKRKRSIYLENDSKIEVNNNQQVPAKIKITVPGLPVVNISSGKGGK
>NZ_CP042434.1|WP_146784424.1|3989621_3990899_-|alpha/beta-fold-hydrolase
MKRNLLLAILLIPFIGLCQTPKQIAKAFVEAIFNKQYDTAISYIDSSIQNKMPPVLLGQITNSMVQKNGDFKKVVDVNQQQAGGYLNCIVNTVFEKNSELIRTVFNSNNKIIGFFLVPHRKNQETDDAPNAYNIKSGNLTLPGTLLIAKDNNQKKLVILVHGSGANDRDETLGQLKPFKDLAQGLLKAGISTYRYDKRTFVAPKSLPKNFTVDDVVTNDVLNIIHYFNNNDTFQNYKLYVIGHSLGAFMAPRIAKKAKGVVNGVVMMAGPARPIQDLILEQLTYLDSLTPSKELDEKLKEVKRQIHYMHGKAFNQNSPSDSLLSKQQASFWLSFNAYKPLEVIKSINTPFLILQGEKDYQVRMADFNLWKRATKGMSNISFKSYPGLSHLFMQSNGTPSPKDYEGEKHIPSQVINDIASWIKKNG
>NZ_CP042434.1|WP_146784427.1|3990906_3991467_-|hypothetical-protein
MVFIFNPFTKIAGGKALWIGGLFAILTLAISYFSHSAFDGVIDFHVAPFTSIWPYVSFYIISWLCLVLFLGLTGLLFTKTRFRWIDILGTTLLSRAPLLLVALAAFAIPYIDKEQLSDITQIHFTAGFFIASFFSLICIIWTVALYYNSYRVCINIYGSKAVWTFILALILAEITSLVFIHSIHFK
>NZ_CP042434.1|WP_146784429.1|3991471_3991744_-|DUF2089-family-protein
MEKRLPIYCPSCNSFLDVEAMSCHHCHTKVVGDYKLPPIMLLPEEDQKFMLDFVKASGSIKLMAEQMSLSYPTVRNILDSVIEKIKNLEN
>NZ_CP042434.1|WP_146784432.1|3992981_3993857_-|SDR-family-NAD(P)-dependent-oxidoreductase
MESKVWFITGSSKGLGKSLTLAILNKGDQVIATARRLSDLDYLDDYPAVNILKLKLDVKDTKKIHQAVSMGIDHFGQIDVLVNNAGFGITGAAESFSDDQVRDQLETNLYAPIELSRAVIPHMRRQGSGHILQISSIGGRVASTGLSIYQAAKFGLSGFSEALHKEVAPLGITVMAIEPGGIKTEWSGSSMSYADSPEVYHAVQSRISFFKNGNFVPVGDPDKMATVLMDLIDHPQPPVHLVLGSDAVGILQNGLSVRTEELKQWLSVSVSTDADQDEQINFIENQPWAVK
>NZ_CP042434.1|WP_146788474.1|3994067_3995558_-|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MVLVGLFSCNKFDEINSDPNTPTEASASLLCTSAILSVARFNGRDAKAYITENALAKYVGYANEGQLAEQYNLLGSGSFSAMTILPDLDKMLKYAKDGPMENAYKGVAAFVKAYMFYQLTMQMGDIPCSEANGGVNGEFQPKYDTQKQVFITILDDLKAADAFFAEGTNFSGDPTPYNGDPAKWRAASNSFALKVLMTLSKKVGDADLSIKARFKSIVDAGHLLENTGEYFGLDYSTQNKHPLSGTNDLFTSRTILSSLLVDNLKQLNDRRLFYYGDPAGAQISSGQSENNMNAYIGVDVSMDYPAMNAGHSANKYSLINSRYLKEEASEPRMLITYGEQELILAEARVLGWISSGDAKSYYENGVKSALEELMNTDPSYAHGMAINQDYIDHYFTGEAAFKTTQSEQLKQIWMQRYIREFMKDGLSSYFEYRRNKYPVFPINPATSLNANDVGAIPMRWLYPSTETDYNRANLIEALDRQFDGYDEINKIMWLLK
>NZ_CP042434.1|WP_146788477.1|3995659_3998980_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKAQRITLHEHEAPLTKIFKAIRQQSAYNFLYADDALNGTTPVSISVKNKDVKAVLDKIFQQQPISYTITDNTIIIKRKAVYPAQTTAALAAIQQLEIQGIVNDELGNPIAGASVIIKRTGRGAITNDRGAFRLQVEQGDVLTITYIGKQAREINIQEGKSDYTITLMDEQRELQQIVVTALGIKRESKALGYSVQTVQGDDLQTVKGVDVGTSLTGRVAGLLVKNSTEFTQAPDIQLRGENPLLVIDGVPYGNMTLRDIAPDDIQSITVLKGATASALYGFRGAGGAIMVTTKKGTNKNGLSVTVNSSSMFTAGFLAIPKMQSTYGRVVNTATNTYARTGDGAWGVPMEGQPVIQWDPISKSMKEMPYLPVGKNNFRNFLDQGYVLNNNIQVIQQGELGSFHASASWVENKGQYPNSKYSKLRYSIGGDIKLDKFTLSTTLSYNKQSSPNIGFSGYTGYDPMYSMLVWSAPDYDIRQYKDYWLIKNEVQNSSYTAGINNPYFDRYERIHNVNRDIFNGSLELNYDFTPWLKGTFRTGYDTYSDKQEIRISEGSFQGAGASTVIPGGTEVWGESARGSFNTGLSRGYSTNNDLLLTAKFKEGDFKIDGFVGGTIYYRQDEGIEALTQGGLSVPAFYSLKASINPAKVNSVTKKQQVNSIYGRGAVSWKDMLFAEATLRNDWSSTLPSSTRSYLYPSVSGSFVASELLPKSGWLNFWKWRGSWTSSKTPADIYSINTVYGITNNSWGDLSSALLPTTIRGANVHPESSSTFEVGTEASMFGNLLSVDISYYDKRMYDFLKSTGISAASGYAANYINIQEEISRRGWEVFTKITPVKTKDWRWDVTLNWSTYARYYTKLDPQFSADKPWVKVGQRVDAYILRDYQKDPEGNIIHSNGLPLYSNYDSRYGYSDPDWIWGAETSLRYKNWSFSIALDGRSGGLAQTTTEMYMWLSGNHPGSVTPERYLDATNPGSKNYIGQGVKVVSGEATYDTYGNITSDTRKYAPNDVPVTYKDYISKLHKGTAWGGAAAPVDVYSTTFFKIREVSLTYSLPKSVYDKIHAKGFSVSAIGQNVFMWAKQFKYSDPDGGVENFSDPSQRFIGLNIKVNF
>NZ_CP042434.1|WP_146784435.1|3999304_4000498_-|DUF4974-domain-containing-protein
MEIPQHILDLIEKYLAATISKEELIALNNWYHTHDDSQTTVEPLVSATQNDDQSSEEVISRRIYEKLLNRKDIQVPRKKISPWKNYAAAIALLISICGLGYFYLHQRSNTKNNAKVALQATSINADLAPGGNKARLTLADGSVVILDSLQNGSIAKQGGIDIQKLANGQLTYNRTNSAINATVVFNQISTPRGGTYRITLADGTKVWLNAASVLKYPTTFKGATREVVLKGEAYFEVAKNAAKPFLVHTAQQTVQVLGTHFDVNAYQDEPVTKTTLLEGRVKVIANHNADQQTILVPGQQSALHPSGKLTLNLHPDLEQVTGWKDGFFVFHSTDLKSILRLISRWYDADIEYKSPKNPVFTGQISKQLPVSKVFALLSLTNEVHYSIEGKTIIVTNK

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Crispr_ID: NZ_CP042434_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042434_3

4328993-4329134

Orphan

Consensus_repeat	Method
TATACCTTTTAGGGTATAAT	CRT

3 spacers

The CRISPR arrays of NZ_CP042434_3

>merge|NZ_CP042434|3|4328993-4329134|CRT
TATACCTTTTAGGGTATAAAGATAATAGTTTTAATTGATATTATACCTTTTAGGGTATAATATGTGATAATTATTTAAATACTATACCTTTTAGGGTATAATAATATTAAATTAGATAAAATTATACCTTATTGGGTATAAT

>NZ_CP042434|3|3|4328993-4329134|CRT
TATACCTTTTAGGGTATAAA	GATAATAGTTTTAATTGATAT
TATACCTTTTAGGGTATAAT	ATGTGATAATTATTTAAATAC
TATACCTTTTAGGGTATAAT	AATATTAAATTAGATAAAAT
TATACCTTATTGGGTATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042434.1\|WP_146785023.1\|4328454_4328790_-\|phosphatidylinositol-kinase	unknown	unknown	gnl\|CDD\|274416
NZ_CP042434.1\|WP_146785043.1\|4337205_4337529_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373954
NZ_CP042434.1\|WP_146785010.1\|4319698_4320007_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_158639589.1\|4320158_4320941_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146785031.1\|4331863_4335259_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP042434.1\|WP_146785046.1\|4337494_4341808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP042434.1\|WP_146785026.1\|4328783_4328990_-\|type-II-toxin-antitoxin-system-Y4mF-family-antitoxin	unknown	unknown	gnl\|CDD\|213767
NZ_CP042434.1\|WP_146785052.1\|4343392_4346542_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146785037.1\|4336117_4336552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146785040.1\|4336695_4337025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_158639694.1\|4322192_4324868_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP042434.1\|WP_146785029.1\|4330200_4331265_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	unknown	unknown	gnl\|CDD\|188533
NZ_CP042434.1\|WP_146785020.1\|4325120_4325783_+\|G-D-S-L-family-lipolytic-protein	unknown	unknown	gnl\|CDD\|239946
NZ_CP042434.1\|WP_146785049.1\|4341923_4343225_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP042434.1\|WP_158639588.1\|4316720_4319174_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP042434.1\|WP_146788535.1\|4325880_4327206_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NZ_CP042434.1\|WP_146785004.1\|4315007_4316702_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP042434.1\|WP_158639590.1\|4335435_4335909_-\|transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP042434.1\|WP_146785017.1\|4321163_4322147_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP042434.1\|WP_146788538.1\|4329345_4330047_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777

Protein	Function_ID	Function_description	E-value
NZ_CP042434.1\|WP_146785023.1\|4328454_4328790_-\|phosphatidylinositol-kinase	gnl\|CDD\|274416	TIGR03071, couple_hipA, HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.	2.44352e-33
NZ_CP042434.1\|WP_146785043.1\|4337205_4337529_-\|hypothetical-protein	gnl\|CDD\|373954	pfam15580, Imm53, Immunity protein 53. A predicted immunity protein with an alpha+beta fold and a conserved tryptophan, and WE and PGW motifs. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a domain of the Ntox24 or Ntox10 families.	9.74235e-35
NZ_CP042434.1\|WP_158639588.1\|4316720_4319174_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.75309e-46
NZ_CP042434.1\|WP_146785031.1\|4331863_4335259_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.26157e-11
NZ_CP042434.1\|WP_146785046.1\|4337494_4341808_-\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	0.000191116
NZ_CP042434.1\|WP_146785026.1\|4328783_4328990_-\|type-II-toxin-antitoxin-system-Y4mF-family-antitoxin	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	1.35006e-15
NZ_CP042434.1\|WP_158639694.1\|4322192_4324868_-\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP042434.1\|WP_146785029.1\|4330200_4331265_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP042434.1\|WP_146785020.1\|4325120_4325783_+\|G-D-S-L-family-lipolytic-protein	gnl\|CDD\|239946	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	5.44484e-60
NZ_CP042434.1\|WP_146785049.1\|4341923_4343225_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.60413e-20
NZ_CP042434.1\|WP_146788535.1\|4325880_4327206_-\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	1.62154e-136
NZ_CP042434.1\|WP_146785004.1\|4315007_4316702_-\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	0.000830256
NZ_CP042434.1\|WP_158639590.1\|4335435_4335909_-\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.14298e-27
NZ_CP042434.1\|WP_146785017.1\|4321163_4322147_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.39206e-11
NZ_CP042434.1\|WP_146788538.1\|4329345_4330047_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	1.54905e-69

>NZ_CP042434.1|WP_146785026.1|4328783_4328990_-|type-II-toxin-antitoxin-system-Y4mF-family-antitoxin
MESKLSDFVKLKRKQLKINQVELSIRAGVGLRFIRELEQGKKTLRIDKVNQVLALFGSELGVIKKIEL
>NZ_CP042434.1|WP_146785023.1|4328454_4328790_-|phosphatidylinositol-kinase
MMRKANVYFKEKIAGIITETTEGYEFQYNNSYINSPGKINPISLTLPIRHEIYYSPILFPFFDGLIPEGWLLNIAVNNWKIAARDRFGLLITLCNDCIGAVSIIPIEINNE
>NZ_CP042434.1|WP_146788535.1|4325880_4327206_-|MATE-family-efflux-transporter
MKQQATKTWKLSTPIIFGELTQMSLGLIDSAMVGSISYKQLAASALVNSVLVIPFVFGIGLTMSISQKVAAAHGRKDGQQVSHYLYNGFILCSIAALMICGLLELGKNILFHLDQDPEVARLSVPFLRLVGFSVVPTLMFMSIKQFTDGLEKTKTAMILSLLAMPLNIFLNWLLIFGNWGMPRLELVGAGLGTLITRIIILIAMIIVLFTHPLFSRYVAVRKNQWKLKWASIRELLRIGVPSGLQAGIETGAFAVSGIIVGTLGAIELAAHQIALQCASLTFMVSLGLAQGCSIRISNAFGRKHWPEIHLIGKSTFYTGLIYGVICALLFIFLRKPLSQIFNDDSQVIALSSMLMFYAAVFQISDATQAIGVGSLRGINDVKMPTIYMATAYWVFGVPIGCLLTFVFHFGVTGIWIGFILGLSFNALFLNKRFNKMVRQHL
>NZ_CP042434.1|WP_146785020.1|4325120_4325783_+|G-D-S-L-family-lipolytic-protein
MKKVWGLLAICLVFLGPVNGQSNQSFKGEINHFLHADSLKMPPKDAILFVGSSSFRKWTDVDKYFPGYTIINRGFGGSQLPNLIYYADKIIFPYHPKQVIIYCGENDFDYDKSISADSVFERFHTLFDLIREKLPEANIGYVSIKFSPSRKYAWPRFEKTNGLIEDFLEEQSNAEFIDITKVMQDASGQVDTSLFLSDQLHMKPAGYARWQKQIQPYLLK
>NZ_CP042434.1|WP_158639694.1|4322192_4324868_-|primosomal-protein-N'
MDNKDKEQQQNGEKHQSASTKTEVAGLHGQQSGDSHKPAQDQGQDQDQDQAQAPGALADLFESANAHKQRLYAEIIIPLHLPRNYTWEIPDYLMAAAAIGLRCEVSLRNKKYTGIIKNLFKVPPKDFTPLPIYSLLDKAPIVTAVQLKFWEWIADYYQCSEGDVMQAAVPSNFKLSSESIIRIEDEFADDVLAGGKQLDQDLSDEEFLLAEALQIRGELRFPEIQQILEGRKIYPVVKKLIDRGLCYIEQSLKEKYKEKKAVFIRFHPDYQKDENLEPLLNNWKGAPAQLKVLMLLRHMTLGDGDVMQSALLKKAATSLSTIKALLDKKMLVAERRSVTRLPVLAPFIEMDFSLSAAQKSAFDLLVDLMQQKKVNLLHGVTASGKTHLYLKLMEQALSAGKQVLYMLPEIALTAQIIRRLQHHFGGHVAVYHSRFNPNERVELWEKVLQGEVQIIVGARSALLLPFKDLGLIIVDEEHDSSYKQQDPAPRYHARDAAIYYGALFEQCPVLLGSATPSLESYYNASQGKYGLVTLLERFENVAMPVIELDNLNMIPKEIPRPILISPELETQIQEALKAQKQVILFQNRRGYSPYQICNSCGWIPQCKHCAVSLTYHKGRNKLVCHYCGTEYPLVTTCAACGSHDFQRKKFGTEQIEEAVAALFPKARVARMDYDSVKGKFSHDAMIQLFESRKIDILIGTQMVVKGLDFEHVSLVGILDADGLLNFADFRVGERAFQLMEQVSGRAGRKDGKGKVLIQVSNIHHPVLQYVQQHDYLAMYQEEIQHRKAFKYPPFTRLIRLIFKHRDTHTARQAAERMAQALRQLASLEVLGPATAPIERVRGQYLWEILIKVPKQPGQLQRCKKVIDHQRAILQSIKEFARVQIAADVDPA
>NZ_CP042434.1|WP_146785017.1|4321163_4322147_+|EamA-family-transporter
MAIRNIFLVLLGGCSFGILSTFVKLAYGYGFSLADVTSAQAYFGAVLLWMLLMIYRLCRPKSRQGHAVASKDTTPTSTALRLILTGMASGCISISYYKCVEVMPASIAIILLMQYTWISIVLERLLFKISITPRKWLFVSIVLVGTILGSGLIGNNGHIQFSIASIGFGLMAGFFYAVFVLASGYVGNALPAIVKSSWIILGVVLIIMAVFPPFAKIRELIDTRTLSIYLMDLLPIGLLLAFFGMVLPPLLFAYAIPKVGVALSSILGSVELPTAALCAYLILNEPISVWQLLGILIILCAIILIHIRPEPKYKTGEIRRKATPTQF
>NZ_CP042434.1|WP_158639589.1|4320158_4320941_-|hypothetical-protein
MHPKRIICVFILILVFAGGAVAQRLIRGHVYGARTTTSPVDSMQLRTYRGQVTFSDNEGYYQISSSNPSNDTLYVSYKGRFIMAYPIGKITTPEKFDIYLQNPGFYDNSYYNELEDVQVHARNYHTDSLEKRRLYGDIFNYSKPKFNPFHPVTSAINLFRQPYLNRQKRYQQFAVSSEKDGYIDSRFTAALVASLTGMQDDEQIRVFMKKYRPSFEQLKGMVDLTLGQYILDCYKVFKVQQSTQKDSTQLPTNTNTSTNN
>NZ_CP042434.1|WP_146785010.1|4319698_4320007_-|hypothetical-protein
MATFFVNQDYIAANLCVNKDNPEMHCNGQCQLDKKLNEDNKQNQPNSSDKRVSFEATVFLFNEANPLAHLTPDTTATPQNGIPVLFTEQAYYAKPIHPPAAC
>NZ_CP042434.1|WP_158639588.1|4316720_4319174_-|TonB-dependent-receptor
MIYLDKYEVYNKTISCKKLYHTKTGWHRVLSSLFTLSILLLFLTPIVAQQTIQQIKGKVLDQQTGQPIAGVTIRFQTSCCLADHGATCQCISDAKGQFNMQYNCSGLCNNMTAAEVNTAEKQMDTLLITAVNYQPSTLIRNHDQVNQPFTAYLQPLTNDLSEVLVTASRFKQTRADIAASIGVVDSLQLALTKATQIDQLVNQVPGVFMADLGSEQHEMSIRQPITTKSLFLYLEDGLPIRTSGLYNHNALLEMNLAATGRIEVLKGPASAQYGPEAVGGAVNIISLAPPQNLSGKITAEADNNGYKKTSLSIGNTFGKFAAVLSGYYANRNNGPIDYSNYHKTAFTLNTVYQISPSLSWQNKATYVDYYADMSGSLDSLAFAHKNFTSHYQFTYRKVKAFRGSSILTKTWNPQSETKLSLMYRNNQTGQNPAYRIKDNKTDPLKATGEINMNAFTSYVGLLQHHQHFNWQNSSLIMGLSADISPSNYDARFIQVDKNTAGDYTSYNDPDSVMTDYNTHINNYAAFLQWQMDLHPGLRLTLAGRYDRFDYDFKNHLPVTAVSGAPSSNVNFNHWTPKVGLNYNLKYAGFYASYGQGYVPPQVTELFNNVKVPFLKPQVFRNYEVGGWLHLLKSTLGIDWSLYRMNGTGEIISVRNTDGSSENKNAGKTTHTGLELGLNYHPDHQWQIRLGGTIARHKFQKETQSGVTLDGNQMQAAPSFIGNGTLTFQPDFLKGFHASVEYQQVGSYYMDDANTTKYKGFEVLNFRAGYQYHKVEIWANALNLLDSYYADVATKSAYGYSYNLGNPFTLVVGLAFHF
>NZ_CP042434.1|WP_146785004.1|4315007_4316702_-|PepSY-domain-containing-protein
MRIKSLYRLHRALSIIIGIPIFLWAISGLMHPLMTNVRPAIATQESPEYLLSSDILKTAIPLKKVLQNAGIHQSFRSRIVHMDSTWYYQVLSRQSPSNQVNKRSRITGTQNAYLSLLQARYFNLQTGRELAQGDKLYAASLARHFLSGKQSQVNSTSPRIKSIQRVRDFTASYTYVNRLLPVEKVRFERADHITIYVDTHNSQFAFALDQHRQNFNQFFGWFHTWSWMDSLPKLKAAIIALILLVALFTAGLGIYLAVKTRPKTSTRNRANKTTSTTLTKARKLHRTSAIIGSIFLICWAFSGLVHAIQNGRTPFYIQPVSNERIKTNLLPDSLDQTFTQLAESSHLSSIGLMQLNGKLFMESSPYDTAEGSKDLMLTGGVNATTKHYYGYEYRKNSIQSNNLSAWTPYTENQIARLMAALVLRKEANSSIGNKQLDHQISKTDTARLQATYLTHFTEAYNFSDKVLPVWQISTSTSAAIQQGATSANNPIFIDASTGSLVKKADPFKQADALIFAFFHKHEFMAWAGKSAKDASTVLGVIIVITLLVIGYRLVYIKYKTKRKS
>NZ_CP042434.1|WP_146788538.1|4329345_4330047_+|ABC-transporter-permease
MLKSMFTRPENVKMYWKEFIGQCYEIGFGALPIVLIVSIFLGAVTTVQTAYQLVSPLIPLTTIAQIVRDSILLELSPTVLSIVLAGVIGSKVASELGNMRVSEQIDALEIMGINPYSYLVFPKIAASFIMMPMLILISCIVGIWGGRVAGDFSGIISPSIFDRGLRMGFSTFNVVFAMIKAYTFAFLISSISAYYGYHVRGGSLEIGRASTKAVVTSCITILIADYILAAVLL
>NZ_CP042434.1|WP_146785029.1|4330200_4331265_+|YpdA-family-putative-bacillithiol-disulfide-reductase
MKPLDILIVGAGPIGLTCGIEAKKAGLDYLIIEKGALVNSLFNYPIFMTFFSTADRLEIGGLPFMCLAPKPGRQEALEYYRQVTQYFDLQIHLYETVDNIKKETEDKGKKGEKGNKENEVDQINEGLFVVNTSKGSYTAKKVIIATGFYDVPIYMDIAGEDLPKVHHYYKEAHPYVMEKTLVVGANNSAVDAALEIWRKGGDVTMLIRGNEIGKRVKYWVKPDIENRIAEGSIKAYFESELLEIKEKEVVIKDKLGKIITLPNDYVLAMTGFRPDFDMLQRFGIQIDRQNACLPDHNPDSMETNVPGLYLAGVVCGGLNTHKWFIENSRVHAEKIVGQIANKLKGGRSLTQSMT
>NZ_CP042434.1|WP_146785031.1|4331863_4335259_-|hypothetical-protein
MIFRLNARTLTLFELSHLNRVQETFAPGDSWLGSASEPAEASRHSVKQKYWINTATDAVRIWDVSYVTTPGSGFGTYTLNPLGTYPAGSLYKNVTVDEQNRQVIEFKDKEGHTILKKVQLSATADNGSGSPHAGWLCTYYLYDDFGNLRCVIQPEGVRLLEANAWNLTNTVGQNILKEQCFRYEYDGRNRMIIKQVPGAGPVYMVYDNRDRLVMTQDALMRVSHKWLTTHYDNLNRADTTWIYSSSTALTSILAAAADTSKYPYTAPTASTILTETHYDDYTKLPAGLSSSYLATWNSYFVPASTTSFPFAETPTQNSTITTKGLVTWTRVKVLDSTLTLAAVNIYDDKGRLIQTQSQNITGGVDVSTNQYSWAGWPLVTVQKQEEKKGSTTQTTVVVTKMTYDDLGRVVKTEMKQSNSHVKSGAMPAAYATISEVGYDALGQVREKKIGKRRSSTVVSGENSYTATPLETQDYDYNIRGWLLGVNRAYVRQNSTTDSLNTATTTGIISGEMFTESSSDLQTVTFPDSHYFGFDLGYDQKQNDRINGIPYDTARYDGNITGMTWKGANDKKIRKYDFGYDKTGRLTVAHFGQFTSSVFSNELVKYDVTGLTYDNNGNILTMNQYGLKSTGNSAIIDQLSYHYKPQSNKLQYVVDAANDQNSTLGDFKYPSVTKTSATIDYIYDGNGNMVSDQNKNISQISYNILNLPSQIWVPGKGVIRYYYDAAGNKLQKRTLDNTVSLTTPSITTYIGGAVYLNDTLQFFGTPEGRVRSNADNTGWLYDYFLKDHLGNIRMMITDDYNVSSPILEAYSYYPFGLQMAGISLQQTGNLQNKYLYNGKELQEDLGLNQYDYGARFYDAQIGRWHILDKLSDKYPNSSPYTYVLDRPTIAIDPDGQRIIFVNGYLGFGSPTGGPTYWNGANGAFVNGAKAFFNDYSTPYFTNVEYSALSSAADRHEDGYAYARDHYYELTEGMDVYGDDNTFEVVTHSMGASFGEGMIDYLKMMGWKVKESVHLNAFQAADIKANTNVNNKPGTDTPDPNGAGTFVIDYQNTNDPVINNWFRSSPGDIKNAKKIREQSPNSLSTRHRTPIDNDNFWNELNGLINQKVNNRQISNILTNWLQQNPNIQVTIQQ
>NZ_CP042434.1|WP_158639590.1|4335435_4335909_-|transposase
MTEVTKSLRTFIIEKFPDAYNNLLTIPGIGSTTAIALIAEIGNFNRFETPCEYCSYLGMIPWDHSSGDSTRTFGVQPRCNKHLRPLLVEAAWIAIRKDAGLLLYYKKHAAKNNKHAIMKVARKLALIAKGVVTNNKPYDPDYLQSRAEIQQQQKPKP
>NZ_CP042434.1|WP_146785037.1|4336117_4336552_-|hypothetical-protein
MPVSKLSHSRDFTGENFYIGLDVHKKSWSVTVRTSNLEVGHFNQAPDPKALHSYLTKKFPSGTYYSAYEAGFSETSSHIALCKLGIQNIIVHASDIPNTDKEKKNKTDVHESRSIAKYLEKGLLKPIHVLTEQATRAKRVFQAT
>NZ_CP042434.1|WP_146785040.1|4336695_4337025_-|hypothetical-protein
MAQSNKLLYVAHQTNDANSTLGDFKYDLNITKTENTKDYTYDGNGNMISDQNKNISQISYNNLNLPSQIWEPGKGVIRYYFDATGNKLQKRTLDNTISLTTPSITTYIG
>NZ_CP042434.1|WP_146785043.1|4337205_4337529_-|hypothetical-protein
MEIIKWLEDWYKLQCDGDWEHDHVINIETLDNPGWIVKINLKDTELENLELMVDDTERSEEDWFHYRIKDSEYFAAGDPNKLLFLLEKFKEIAEMHSKKNNQFDDGN
>NZ_CP042434.1|WP_146785046.1|4337494_4341808_-|hypothetical-protein
MLSNIKSRTLFLSLCLALLCFSLSKEAISQCTYSNYSLAPSGNVCGTTTTITMSGSQSGVNYQLKNTSGNLGSVVAGTGSAISWSNVSLASGGASYAVAATKSGCSGIVIVATTYITPSSPVTSSDVVITASDAVLYQNDSIVFTVGKASGSRAVFTGYQLYDGPPIGIQSSSNTFVVKSMPAHSYSILVSSSCGSAMVSCPTFVEGGIRPADTSSPTVLSNQNYIATWTTTAPITDPDLLITRPLSDVKLSVQYFDGLGRPIQTVLKQGSLVTATNTSADLITSTLYDSMGRQNSTLLPYAATDAADGHFRPDAEADQISWYNGSSTISKPGQGVNARTLTLFEPSPLNRVQETFAPGDSWLGSAGEPAEANRHSVKQKYWINTATDAVRVWDVSYVTTPGSGFGTYTLNPLDTYPTGSLYKNVTVDERNRQVIEFKDKEGHTILKKVQLSATADNGSGSPHAGWLCTYYLYDDFGNLRCVIQPEGVRLLEANAWNLTNTVGQNILKEQCFRYEYDGRNRMIIKQVPGAGPVYMVYDNRDRLVMTQDALMRVSHKWLTTHYDNLNRADTTWIYSSSTALTSILAAAADTSIYPYTAPTASTILTETHYDDYTKLPAGLSSSYLATWNSYFVPASTTSFPFAETPTQNSTITTKGLVTWTRVKVLDSTLTLAAVNIYDDKGRLIQTQSQNITGGVDVSTNQYSWAGWPLVTVQKQEEKKGSTTQTTVVVTKMTYDDLGRVVKTEMKQSNSHVKSGAMPAAYATISEVGYDALGQVREKKIGKRRSSTVVSGENSYTATPLETQDYDYNIRGWLLGVNRAYVRQNSTTDSLNTATTTGIISGEMFTESSSDLQTVTFPDSHYFGFDLGYDQKQNDRINGIPYDTARYDGNITGMTWKGANDKKIRKYDFGYDKTGRLTVAHFGQFTSSVFSNELVKYDVTGLTYDNNGNILTMNQYGLKSTGNSAIIDQLSYHYKPQSNKLQYVVDAANDQNSTLGDFKYPSVTKTSATIDYIYDGNGNMVSDQNKNISQISYNILNLPSQIWVPGKGVIRYYYDATGNKLQKRTLDNTVSLTTPSITTYIGGAVYLNDTLQFFGTPEGRVRSNADSTGWLYDYFLKDHLGNTRMMITDDYNVASPILEAYSYYPFGLQQKGIGLTQAGTLHNFKNTFQKQELNEDLGVDLYEFKYRMDDPQIGRFLKIDPLADKYEYNSTYAFSANKVTGHVELEGLEPYAAYRVEQDLRDVESGKVTTEQLDKRLNIRANSDLVAVGLGLVLAGAAEELGAGTVGKIIRSFVSKGKGETDNEALTEIETSPSLSSNKSVRSSNRLQPDKENADGDHTTFIRDANDDIFKYQEWKKNDKNPNKFDAGKRFDGGDFDGKPGALHYNNKTQKDIPTPILMKKRFPGRYAPRDWMKFQIINVSNLKNKKNGNNKMARGLV
>NZ_CP042434.1|WP_146785049.1|4341923_4343225_-|T9SS-type-A-sorting-domain-containing-protein
MRITLLLLLLSVFYSSALNAQVSIRTSAEKVLKDRSSTALEVYREGVKYLKNGPTDYEKAFLSFKTAANMGDDQACFATAYCLFKGIGCNQQYEQAVRLFREGALKGRDNSMYFLGLAFKNNYGIQRNEDSAKYWLGRAAALGYKQAIEELKTTEAENANNIAAILMEKINRAKSPKLATLNEFKRVEGGIPSKSLIAGTYQGYTLHYDWSGMYLISSTPLKLVLQDFPAGATDSISGTWTDKTASPIQLSGLLTGDSVLFEHTFYKVIDHYSWGKPINYEFKSAILSLTQSGDSVYLSGMLSLFSPDRNEPSKPTLIALVRKNAIAKSLRDSLDHQESDGTSSLSKVISSVRVYPNPFSTVFTAEFVLKEDATVQLVLYNMVGDRVFKKDKTPLKAGKYAILISPGRLTSGMYILKLLLEDGRSVDLKVIRR
>NZ_CP042434.1|WP_146785052.1|4343392_4346542_+|hypothetical-protein
MRGHFIRLYVLIILSLLLTSSSRAQLSQTVEDKLLPVSPTTYQFTKYEDLPIGKYTGVADVTVPLYTIEQGDLTIPITVNYHTGGIKVNEEASWVGLGWNLPLGQIVQTVMDKDDLADVYYLAAQNSKGTSANPLWMQPDFIHGPFSVLYSYNHDACGTYMPATTPTYTPQTPIAAYGAATTLRYYMPYNGSMNNHYQYFFETHEYFDSEHDIFKANFLGNSINFIYDVVTDNFVSLNKKGYKIEFQQNAFTITIPTGQTFVFGQYTPVYTDNSDKNGCTIPPTYIKPTSKKWMVTKIVSLNKDTISFHYAQSDSLYRSFPQNSQSAVVQKSASSHGISYTTFTGYVSGSSTGMLFSCNIGVDTINPLTTITTFREPECHLTEIKSKFATVTFHASPRLDVNGGVRLDSLTIINQNQHIVDRFSFEYSYINSSTVKDHVISNGAYYNDTGRFSYLRMQLDQIKQNDSNWYQFDYNPVKLPHKNSCATDFWGFYNGALTNITLIPNPVRFPSKSSLGDSHNNHGADVVNTQAGILISITYPTGGKTKFTYELNTFTNYFAPDIDSLNNVTTKGEGLRTKSIDFYASGSTSPSKRTTYNYFGGINNSPKSFFRDEQLSVLKTGEIVDGKYMLYTYDQTVINGSQFLSSNPMGSHAGVGYSEVIQYNLDNVGNNIGAVDTYFNNSQDILVNAGITSGSAVIFSVPSFKSPEEPESGSIAKEDIRDSNQVLTKRTLNYYSNHSSPIYYSVMVGGYPALVDVNSSTGSQCSHYIINPHNLLVWYPVFDVETLPDSTIVYNYSLNDSLRMKETNIYESQYRLMRRNVYQDSKGASYSTVYYYPFDYSASNVVYAQMVNDNRVAEVVNTSDLKGDVTGHYEHSISKHFIAGNRPNSYLLASISERYGNIHPETTNATYDLYDGNNNLLQYTVAGTPTTLIWGYKGQYPVAQIKGVSFNEINLLIDTAAIYDKTDDDIATYLSQLRTQLQNKTDVFVKTFTYLPLVGLATETDEKGAVKKYKYDNFNRLSDILDKDNKVRMHNDYHYKKWINLVLSK

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Crispr_ID: NZ_CP042434_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042434_4

5419329-5419665

Orphan

Consensus_repeat	Method
CTAACGCGTTCCTCTTTACAATTTTT	CRT
TAACGCGTTCCTCTTTACAATTTTT	CRISPRCasFinder
CTAACGCGTTCCTCTTTACAATTTTT	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP042434_4

>merge|NZ_CP042434|4|5419329-5419665|CRT,CRISPRCasFinder,PILER-CR
CAATCGCGTTCCTCTTTACAATAATGGGCATTTTAGCGGTAATCGTATCTAACATACAGTATATCAATTAGTTGAATAACTAACGCGTTCCTCTTTACAATTTTTTTGAGGTATTAGATTAGATGCGTATTAAGGGCTGTATATCAGTCAATTGTGTGATAACGCGTTCCTCTTTACAATTTTTGAACATTGAGCAAACAAATTTTAATATGCTATTTATCAGTCAGTTACGAGGCTAACGCGTTCCTCTTTACAATTTTTTGCCTCTGGAAGACAAACTTAATATTTTATATATCAACCAGTTAAGGCAGTTAAGGCGCTCCTCTTAATCATTAAG

>NZ_CP042434|4|4|5419329-5419589|CRT
CAATCGCGTTCCTCTTTACAATAATG	GGCATTTTAGCGGTAATCGTATCTAACATACAGTATATCAATTAGTTGAATAA
CTAACGCGTTCCTCTTTACAATTTTT	TTGAGGTATTAGATTAGATGCGTATTAAGGGCTGTATATCAGTCAATTGTGTG
ATAACGCGTTCCTCTTTACAATTTTT	GAACATTGAGCAAACAAATTTTAATATGCTATTTATCAGTCAGTTACGAGG
CTAACGCGTTCCTCTTTACAATTTTT

>NZ_CP042434|4|3|5419330-5419665|CRISPRCasFinder
AATCGCGTTCCTCTTTACAATAATG	GGCATTTTAGCGGTAATCGTATCTAACATACAGTATATCAATTAGTTGAATAAC
TAACGCGTTCCTCTTTACAATTTTT	TTGAGGTATTAGATTAGATGCGTATTAAGGGCTGTATATCAGTCAATTGTGTGA
TAACGCGTTCCTCTTTACAATTTTT	GAACATTGAGCAAACAAATTTTAATATGCTATTTATCAGTCAGTTACGAGGC
TAACGCGTTCCTCTTTACAATTTTT	TGCCTCTGGAAGACAAACTTAATATTTTATATATCAACCAGTTAAGGCAGT
TAAGGCGCTCCTCTTAATCATTAAG

>NZ_CP042434|4|4|5419408-5419589|PILER-CR
CTAACGCGTTCCTCTTTACAATTTTT	TTGAGGTATTAGATTAGATGCGTATTAAGGGCTGTATATCAGTCAATTGTGTG
ATAACGCGTTCCTCTTTACAATTTTT	GAACATTGAGCAAACAAATTTTAATATGCTATTTATCAGTCAGTTACGAGG
CTAACGCGTTCCTCTTTACAATTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042434.1\|WP_146787136.1\|5416109_5416940_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_CP042434.1\|WP_146787162.1\|5425383_5426100_-\|lycopene-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274590
NZ_CP042434.1\|WP_146787159.1\|5424595_5425387_-\|tryptophan-rich-sensory-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146787127.1\|5412422_5412701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146787139.1\|5416932_5418372_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP042434.1\|WP_146787168.1\|5426551_5427025_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176862
NZ_CP042434.1\|WP_146787124.1\|5410506_5411601_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146787177.1\|5428304_5429798_-\|phytoene-desaturase	unknown	unknown	gnl\|CDD\|274273
NZ_CP042434.1\|WP_158639661.1\|5413730_5413997_-\|TonB-dependent-receptor	unknown	unknown	unknown
NZ_CP042434.1\|WP_146787174.1\|5427484_5428321_-\|squalene/phytoene-synthase-family-protein	unknown	unknown	gnl\|CDD\|173831
NZ_CP042434.1\|WP_146787180.1\|5429924_5430605_-\|winged-helix-DNA-binding-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP042434.1\|WP_146787144.1\|5419027_5419279_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|214678
NZ_CP042434.1\|WP_146787130.1\|5412733_5413222_-\|DUF4249-family-protein	unknown	unknown	gnl\|CDD\|379442
NZ_CP042434.1\|WP_146787155.1\|5422495_5423308_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187576
NZ_CP042434.1\|WP_146787165.1\|5426096_5426555_-\|beta-carotene-hydroxylase	unknown	unknown	gnl\|CDD\|178211
NZ_CP042434.1\|WP_158639660.1\|5413239_5413512_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042434.1\|WP_146787133.1\|5414016_5415078_-\|transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP042434.1\|WP_146787141.1\|5418361_5419012_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP042434.1\|WP_146787151.1\|5421055_5421952_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|187553
NZ_CP042434.1\|WP_146787171.1\|5427026_5427488_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042434.1\|WP_146787136.1\|5416109_5416940_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.99508e-50
NZ_CP042434.1\|WP_146787162.1\|5425383_5426100_-\|lycopene-cyclase-domain-containing-protein	gnl\|CDD\|274590	TIGR03462, Bifunctional_lycopene_cyclase/phytoene_synthase, lycopene cyclase domain. This domain is often repeated twice within the same polypeptide, as is observed in Archaea, Thermus, Sphingobacteria and Fungi. In the fungal sequences, this tandem domain pair is observed as the N-terminal half of a bifunctional protein, where it has been characterized as a lycopene beta-cyclase and the C-terminal half is a phytoene synthetase. In Myxococcus and Actinobacterial genomes this domain appears as a single polypeptide, tandemly repeated and usually in a genomic context consistent with a role in carotenoid biosynthesis. It is unclear whether any of the sequences in this family truly encode lycopene epsilon cyclases. However a number are annotated as such. The domain is generally hydrophobic with a number of predicted membrane spanning segments and contains a distinctive motif (hPhEEhhhhhh). In certain sequences one of either the proline or glutamates may vary, but always one of the tandem pair appear to match this canonical sequence exactly.	1.12128e-11
NZ_CP042434.1\|WP_146787180.1\|5429924_5430605_-\|winged-helix-DNA-binding-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.44634e-07
NZ_CP042434.1\|WP_146787139.1\|5416932_5418372_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.45212e-23
NZ_CP042434.1\|WP_146787174.1\|5427484_5428321_-\|squalene/phytoene-synthase-family-protein	gnl\|CDD\|173831	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes the condensation reaction of two molecules of geranylgeranyl diphosphate to produce phytoene, a precursor of beta-carotene. These enzymes produce the triterpene and tetraterpene precursors for many diverse sterol and carotenoid end products and are widely distributed among eukareya, bacteria, and archaea.	6.45474e-62
NZ_CP042434.1\|WP_146787177.1\|5428304_5429798_-\|phytoene-desaturase	gnl\|CDD\|274273	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.1591e-114
NZ_CP042434.1\|WP_146787151.1\|5421055_5421952_-\|TIGR01777-family-protein	gnl\|CDD\|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.19472e-108
NZ_CP042434.1\|WP_146787144.1\|5419027_5419279_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|214678	smart00470, ParB, ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity.	1.0229e-11
NZ_CP042434.1\|WP_146787130.1\|5412733_5413222_-\|DUF4249-family-protein	gnl\|CDD\|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.2057e-14
NZ_CP042434.1\|WP_146787155.1\|5422495_5423308_-\|NAD(P)H-binding-protein	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.81805e-63
NZ_CP042434.1\|WP_146787165.1\|5426096_5426555_-\|beta-carotene-hydroxylase	gnl\|CDD\|178211	PLN02601, PLN02601, beta-carotene hydroxylase.	4.87951e-19
NZ_CP042434.1\|WP_146787133.1\|5414016_5415078_-\|transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	7.93314e-11
NZ_CP042434.1\|WP_146787141.1\|5418361_5419012_-\|hypothetical-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.34768e-09
NZ_CP042434.1\|WP_146787168.1\|5426551_5427025_-\|SRPBCC-family-protein	gnl\|CDD\|176862	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	3.68052e-53

>NZ_CP042434.1|WP_146787144.1|5419027_5419279_-|ParB-N-terminal-domain-containing-protein
MKAHLQDVSIDNFDLSLSRLRISKPNQVTDVEIRMTKQGQLQPLAVRQANGRYQIIDGFKRYYAAMEMALNTLQCYILDVDLQ
>NZ_CP042434.1|WP_146787141.1|5418361_5419012_-|hypothetical-protein
MSFNQAGRSMDIWEEAMILSDLASSHGLSQKSLAKLTGYSRSWISRRLSLIGKLSEALITEIRMNTLSSTHARALIKLPRGNQMEVADVITHWKLSSRQCDLLVEAYLKATDRTEQQHLLVHPELTLTEEPPTFPCSHYDPELSDFGNELMNGTREALSFIEFMLCELGAEQINRLVETEKAIAVSELTTLSGAIQKLIKTISDLQKHKPIEHHDR
>NZ_CP042434.1|WP_146787139.1|5416932_5418372_-|IS21-family-transposase
MIDEYLENIVITLHANNGWPIRKISRELSISRSRIRRMLQSNTALRDKPTEVNIPVKTHRASKLDPYKDFVVSLMEKHPKITAQRVFEHLVEKGYDGGISICRYLVRALRGAGSKEPIKMVETDPGQLAVHDWSDYNICFTENVKKEKVTFFSYILGYSRRQYIAVVDDKTQQTLFRSLIAAFIYMDGVPREIRADNQKACVDHWEPGRPVFNRKYLEFATWYRFTPKTISPRRPVENLKIERPFWYLELSFLNGREFKDREDLKNQLQEWLTQVNDVRIHGTTKKRPIDLYTEEHPYQQTLPTAHFDTALITHKVVNQESCIYWESYQYVVPPKYMFELCCVRITADHMMVYAPTGEQIACHPLAEKGRKERYVGDHKRSQNKPELSVVDVIHRLESFSPDMAEYIEQIKRHNPTSWRHHLRRLLALRVNYRVEDILVAVRRASGYKVFESGAIERFLENNSEPRYSIKLTFKPNDNE
>NZ_CP042434.1|WP_146787136.1|5416109_5416940_-|ATP-binding-protein
MNKGKNKTLQQKEQFTENCRYLGLKVLAEQYQQMVDKANSDNNMGYFEFIQAIIQTESAAKKQRQIEYLISGSKLPQPLKLLGDFDFDFQPNLDRRLIMDLASLQFLEKNQSILLTSTNNGVGKSHIARSLALLACQNGHKTLYTTCSDLILDLNQGVFEKTLEKRMKKYTNPELLVVDEMGNDRLELQIVKEAHLLFKVIDQRYNDNKSLIFTTNVEEADWAEFLGDPITTSAILDRIYHNSVIIRIKGESYRRFQSEQLQKEYGVQNNEGKPEQ
>NZ_CP042434.1|WP_146787133.1|5414016_5415078_-|transposase
MSKYNKSFLSEVFNITPNSTTMASLIKDLGRNRQPIVDYMKQISGDDPLVLMDATSIVSYSDNLTRVKNGITTDSTFEPIFNLLYFYCPDNYMPAYYRLFDGNLKDVTMVTMALQESGYKNALIIADKGFYSAANIKLLENANLQYIIPLKRNSTLIKKTRFKKMKDSINKFIFEDRVICFDSYSVPGKKKIYLYIDEVLMMAESRDYTKRMKNHPENYNEIKFKEQSLNFGSFAIITNRLDDAEEVYINYKSRCGVELLFDGVKNILGNDYTYMHDDHALEGWMFINHLALQVHHKIYRFLKEKQLLSKYSIRDFIEYLVAIRKVKVNDEWVLEPAIDKQMKMLKDLSISIP
>NZ_CP042434.1|WP_158639661.1|5413730_5413997_-|TonB-dependent-receptor
MSNSTGGSPTDQWIGNSYNIRPEVADQLSAGYFKSINGNAYELSAGIYYKLMQNQIDYKDGVDLNTTPDVERELLFGKGRAYGLEVML
>NZ_CP042434.1|WP_158639660.1|5413239_5413512_-|hypothetical-protein
MVNNMVIYQYAKRNADRMAATHRLDFSATYERPKKGKVHSSWSFGLYNVYGRQNPYSLTFKENKIDPQKIDAVQTSLFRWIPSVTYNFNF
>NZ_CP042434.1|WP_146787130.1|5412733_5413222_-|DUF4249-family-protein
MMKTILNMLFIAMVLASCEKVVALRYKDNQSRIVIEGNITDQKSPYFVKVIKSIRLPSTGSYPTIDNATVTLNDDKGNSEDLTPMGNGLYRSNKIDGHPGNTYNLTLNAEGQVYTAQSSMPQKVPFDSIEIEEVMVTGETEFNVIPNIWIPSAMTIIIDSYF
>NZ_CP042434.1|WP_146787127.1|5412422_5412701_-|hypothetical-protein
MDDLMRNGLENTERLEINDDDLKLKRGDSLCIQMECIDQNVALYYKALALMADSGPGGGTTPNNPPNNISNGALGVFSAHTVETRAAQIPKH
>NZ_CP042434.1|WP_146787124.1|5410506_5411601_-|hypothetical-protein
MGYAFGDYATKAHSDSLNRGGANQYTGVAKNENAFAFRRIYLGYDYNISKKFFTEILLAAEDNITHTSGDGAKTASGDLLSNNKYTFYIKYANVHWKDIWTGTELIIGQSMTPAFSATSEKVWGYRSVERTIADIRRTPSFDLGVSLRGRFDKAAKYGYDLMVGNGNGAVPENNKFKKFYGDLWAKLLNKKLTLQLYADYERLQWTSQWHHETNMIKAFVGYTDKAYAVGVEGFLNHGKNDVAGINASNRDTLNADALGLSIFGRATVIPGKLAAFSRIDFFNPDRHYEADKYESYQGFSSHYEPNTKEKFVTAGLDFTPVSNVHIIPNIWYNSYEGQQAGLVGARKHDYDLVYRVSFNYVFGK
>NZ_CP042434.1|WP_146787151.1|5421055_5421952_-|TIGR01777-family-protein
MKKILLAGSTGFIGKHLISYLTENGYELSVLTRRRLKDTPNVKYFQWDVEKGFIDDKAFENVDTIINLTGANIGVKRWIEKRKKEIVNSRVDSINLLYDYVSKDHYPIKSFISASATGYYGAVTTDQIFTEESKSGNDFLASVSQKWEDTARQFENIGCRLVILRQGVVLGKDSGIYQKMTSLASKGINPAVGNGKQYLPWIDVRDLVRLYAFALENEVIKGVFNAVSSEQITMNEFAQKLSKSIDKNSILPNAPSFLVRLALGEMSSMVLEGSRVSNQKIKESDFTFLYDNLEKSLQ
>NZ_CP042434.1|WP_146787155.1|5422495_5423308_-|NAD(P)H-binding-protein
MNNSKQMSILGCGWLGLPLGKKLVASGYQVKGSIRQEKKIFGLKNAGIQAYLLGIGAEKIKGDFAQFLEGTEILIIAIPPGLRKQPAENFVDKIKAILPHIEQSDVKKVLFISSTSVYADDNTIVAEDTIPLPETESGKQLLATEQLLKSNNHFQTTILRFGGLIGSDRHPINFLAGKKDLKNPDAPVNLIHLDDCIHIIRKIIEENIWNETFNAVAPFHPTREEYYTDQAKSKGLKIPVFIQNIPIQGKTVSSQKVQDVLKYRFIRNVL
>NZ_CP042434.1|WP_146787159.1|5424595_5425387_-|tryptophan-rich-sensory-protein
MKKTLQILNGIAAVSTIAMGYLSNTGIFNGKTMASVSAEYQTLFTPAGYAFSIWGLIYLSLLGFVIYYGFSLFKANIKEDNTVKEVGWWFFISCLANSLWVVVWLYEYTLISVFLMIVLLFSLLKIVVKTKMELHNAPLKKFLFLFWPFCIYSGWVSVALIADIAAYLTKIGWNGFGLSETIWAVIMIVVAAVVHIFMIWKRNMREFALVLVWSLIAIAVANQNGNTTVVWVAIIIAIIVFINIAIHGYQNRKSNPFLQRSSK
>NZ_CP042434.1|WP_146787162.1|5425383_5426100_-|lycopene-cyclase-domain-containing-protein
MMHYTYILIDFLTVVVCFAFSFHPKIRFDKHFLAFLKASVLVAVPFIIWDALFTKFGIWWFNTDYTLGLTIFGLPIEEVLFFICIPFACVFTFFCLDKFFKLDWANAFNNTIVFVGVIVCVLSALLFYDKMYTFVTAVAATLVLVYLHFIANVEWIGKASLVYLILMLGFFPVNGILTGSGLPSAVVNYNPNEFLVIRMFTIPIEDAVYGYTQFLLVLYFFKMFQKEKVSFKSKYAIK
>NZ_CP042434.1|WP_146787165.1|5426096_5426555_-|beta-carotene-hydroxylase
MKFLIVIAVFIAMEGATWFIHKYIMHGILWVLHKDHHDHSNTGPMEKNDYFFVIFALPTIALMYFGSLENFNYLFFIGLGIMLYGMAYFLVHDIFIHQRMHVFRKTNNPYFMAIRRGHKQHHKHLGKEDGECFGFLFVPFKYFRMYFKNKNG
>NZ_CP042434.1|WP_146787168.1|5426551_5427025_-|SRPBCC-family-protein
MKQYLYRTQQLSCDIETAWNFFSSPYNLSKITPKNMGFVVLTDLKDDAMQEGMEIEYKVTPLFGIPMKWKTKITQVDLYKSFTDFQEKGPYKLWNHHHEFMENKDGVLMKDNLTYEMPYGVLGQLAHSLIVKKKLKRIFDYRYQVLEELINKKENKI
>NZ_CP042434.1|WP_146787171.1|5427026_5427488_-|hypothetical-protein
MMKNTVVLLFFGLILYSQTAFGQNINYIRANYEKATTDKTVCQSLIKDLGNEKISNLELAYLGALETIWAKYVGNPFSKLSTFNKGKEKLEKAVKNAPDNLEIRYLRLSVQKNAPSILGYDKAIKTDVEFLRKNIGRVELAALRNRIEQLLKG
>NZ_CP042434.1|WP_146787174.1|5427484_5428321_-|squalene/phytoene-synthase-family-protein
MKRLYDELAYDVSKRTTKKYSTSFSLGILALKPTIRNAIYAVYGFVRLADEIVDSFHDYDKAGLLNQFKAETHQAIRSGISINPILQSFQETVNKYQIDLKLIDDFLYSMEMDLNPMVYDMESYDEYIFGSAEVVGLMCLQVFTQGDKEMYKQLKPYAQKLGSAFQKVNFLRDLKDDYQLLGRTYFPNVNMECFDNNCKCEIEREIELEFKEALIGIKMLPESARFGVYLAYRYYLALFHKIKNTPAHKIINQRVRIPNSKKLMLTMHTYLRFKTAFL
>NZ_CP042434.1|WP_146787177.1|5428304_5429798_-|phytoene-desaturase
MHKKIAIIGSGFSGLSAAAYSSKAGNEVHVFEKHSQAGGRARQFKTENGYTFDMGPSWYWMPDIIESFFADFETTTANFFELKSLDPQFEMVFSDEKISVPKPFDDLKILFEKIEKGSGQKLEKFMKSARYKYEVGMQDFVNKPCDSWTEFMSPKIARSALKLDLLTNFRSYVSKYFSNPKLKALMEFPVIFLGASPKEIPALYSLMNYGGYVLGTHYPMGGFYQLVLAMKKVAEAQGVIFHFDSAVEKIDAENGKVSSLEINGQIEHFDAVIASSDYHYTESLLPEQYRNYDEEYWKSRTFAPSCLIYYLGFSQRIPNLQHHTLFFEYDFDEHISSIYEKKKWPEKPLFYACCPSKTDPNVAPKGHENIFLLMPIATGLKEEETYREKYFHEMIQRLEKHTGTSNLLSKIDYKRSYCAQDFYKDYNAYQGNAYGLANTLKQTAVLKPKIKNKKLKNLFYTGQLTVPGPGVPPSIISGRIVAKEVNKLKNVRYEKTV
>NZ_CP042434.1|WP_146787180.1|5429924_5430605_-|winged-helix-DNA-binding-protein
MNSFQLLKVLMQELEAYQDKAKDKNALSLDEFILSLTPNVDLDNLKNNFVKSATLKPEENHQRVENNIERVISQHILFMYRYIKFYSKMVFADSKIKTIEDFSFLITLMQQPALPKTELIRRNIYEKSSGVEAINRLIKSKLLAQKQNPDDKRSQLIFLTDRGRAALFQVFGKMNDLGIIASGDLSDAEKNELAILLKKLDRFHFDNYNNVNSNQLTDYLPEKKKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042434_3	3.3\|4329095\|20\|NZ_CP042434\|CRT	4329095-4329114	20	NZ_CP032530	Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence	57972-57991	1	0.95
NZ_CP042434_3	3.3\|4329095\|20\|NZ_CP042434\|CRT	4329095-4329114	20	MT601270	Bacillus phage vB_BsuM-Goe9, complete genome	29287-29306	1	0.95
NZ_CP042434_1	1.6\|3981133\|37\|NZ_CP042434\|PILER-CR,CRISPRCasFinder,CRT	3981133-3981169	37	MN862334	Trichosanthes kirilowii gokushovirus strain pt111-gok-2, complete genome	1502-1538	4	0.892
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	272487-272522	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	110872-110907	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP053290	Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence	30115-30150	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	289585-289620	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	188544-188579	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	50878-50913	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP040341	Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence	71367-71402	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	33894-33929	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	206282-206317	7	0.806
NZ_CP042434_1	1.51\|3984141\|36\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984141-3984176	36	NZ_CP042928	Bacillus cereus strain G1-1 plasmid unnamed, complete sequence	231878-231913	7	0.806
NZ_CP042434_1	1.6\|3981133\|37\|NZ_CP042434\|PILER-CR,CRISPRCasFinder,CRT	3981133-3981169	37	MH616677	Microviridae sp. isolate cthi937, complete genome	210-246	8	0.784
NZ_CP042434_1	1.6\|3981133\|37\|NZ_CP042434\|PILER-CR,CRISPRCasFinder,CRT	3981133-3981169	37	MK496799	Capybara microvirus Cap3_SP_465, complete genome	219-255	8	0.784
NZ_CP042434_1	1.6\|3981133\|37\|NZ_CP042434\|PILER-CR,CRISPRCasFinder,CRT	3981133-3981169	37	MH617136	Microviridae sp. isolate ctbe197, complete genome	207-243	8	0.784
NZ_CP042434_1	1.6\|3981133\|37\|NZ_CP042434\|PILER-CR,CRISPRCasFinder,CRT	3981133-3981169	37	MG945280	UNVERIFIED: Microviridae sp. isolate 10229-1602, complete genome	1305-1341	9	0.757
NZ_CP042434_1	1.55\|3984404\|32\|NZ_CP042434\|CRISPRCasFinder,CRT,PILER-CR	3984404-3984435	32	MN692994	Marine virus AFVG_117M61, complete genome	58700-58731	9	0.719
NZ_CP042434_2	2.14\|3986377\|36\|NZ_CP042434\|CRISPRCasFinder,CRT	3986377-3986412	36	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1365824-1365859	9	0.75
NZ_CP042434_2	2.14\|3986377\|36\|NZ_CP042434\|CRISPRCasFinder,CRT	3986377-3986412	36	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	151379-151414	9	0.75
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NC_018141	Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence	145895-145931	10	0.73
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NZ_CP045305	Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence	8152-8188	10	0.73
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NZ_CP025492	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence	67925-67961	10	0.73
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NZ_CP021284	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence	139229-139265	10	0.73
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NZ_CP042253	Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence	10340-10376	10	0.73
NZ_CP042434_1	1.49\|3983980\|37\|NZ_CP042434\|CRISPRCasFinder,CRT	3983980-3984016	37	NZ_CP011106	Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence	136109-136145	10	0.73

1. spacer 3.3|4329095|20|NZ_CP042434|CRT matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 1, identity: 0.95

aatattaaattagataaaat	CRISPR spacer
tatattaaattagataaaat	Protospacer
 *******************

2. spacer 3.3|4329095|20|NZ_CP042434|CRT matches to MT601270 (Bacillus phage vB_BsuM-Goe9, complete genome) position: , mismatch: 1, identity: 0.95

aatattaaattagataaaat	CRISPR spacer
aatattaaattagataaaac	Protospacer
*******************.

3. spacer 1.6|3981133|37|NZ_CP042434|PILER-CR,CRISPRCasFinder,CRT matches to MN862334 (Trichosanthes kirilowii gokushovirus strain pt111-gok-2, complete genome) position: , mismatch: 4, identity: 0.892

aagaatccgatttggaacaaaaaaataatgaataaaa	CRISPR spacer
aagaatacgattgggaacaaaaaaataatgaatatca	Protospacer
****** ***** *********************  *

4. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

5. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgaacaa	Protospacer
**. * ************.***** *******  **

6. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

7. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgaacaa	Protospacer
**. * ************.***** *******  **

8. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

9. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgaacaa	Protospacer
**. * ************.***** *******  **

10. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040341 (Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

11. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgaacaa	Protospacer
**. * ************.***** *******  **

12. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

13. spacer 1.51|3984141|36|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042928 (Bacillus cereus strain G1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.806

aaatcttaaaactctaaattaaaagatcatgacaaa	CRISPR spacer
aagacataaaactctaaactaaaatatcatgagcaa	Protospacer
**. * ************.***** *******  **

14. spacer 1.6|3981133|37|NZ_CP042434|PILER-CR,CRISPRCasFinder,CRT matches to MH616677 (Microviridae sp. isolate cthi937, complete genome) position: , mismatch: 8, identity: 0.784

aagaatccgatttggaacaaaaaaataatgaataaaa	CRISPR spacer
gataaggcgattaggaacaaagaaataatgaatagta	Protospacer
.* **  ***** ********.************. *

15. spacer 1.6|3981133|37|NZ_CP042434|PILER-CR,CRISPRCasFinder,CRT matches to MK496799 (Capybara microvirus Cap3_SP_465, complete genome) position: , mismatch: 8, identity: 0.784

aagaatccgatttggaacaaaaaaataatgaataaaa	CRISPR spacer
agtaagacgatttggaacaaaaaaataatacatatca	Protospacer
*. **  **********************. ***  *

16. spacer 1.6|3981133|37|NZ_CP042434|PILER-CR,CRISPRCasFinder,CRT matches to MH617136 (Microviridae sp. isolate ctbe197, complete genome) position: , mismatch: 8, identity: 0.784

aagaatccgatttggaacaaaaaaataatgaataaaa	CRISPR spacer
aactaaacgatatggtacaaaaaaataatgaatatat	Protospacer
**  *  **** *** ****************** *

17. spacer 1.6|3981133|37|NZ_CP042434|PILER-CR,CRISPRCasFinder,CRT matches to MG945280 (UNVERIFIED: Microviridae sp. isolate 10229-1602, complete genome) position: , mismatch: 9, identity: 0.757

aagaatccgatttggaacaaaaaaataatgaataaaa	CRISPR spacer
taaaaggcggtttggaacaaagaaataatgaatttga	Protospacer
 *.**  **.***********.***********  .*

18. spacer 1.55|3984404|32|NZ_CP042434|CRISPRCasFinder,CRT,PILER-CR matches to MN692994 (Marine virus AFVG_117M61, complete genome) position: , mismatch: 9, identity: 0.719

gtgtctttattgtaggggatctttgtttgggg	CRISPR spacer
attaagatattgaagaggatctttgtttggga	Protospacer
.*     ***** **.***************.

19. spacer 2.14|3986377|36|NZ_CP042434|CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.75

cctattagccggctggatcttttgcaggcagtgggc	CRISPR spacer
ttcgcgaaccggcaggatcttttgcaggcagtgcgc	Protospacer
..... *.***** ******************* **

20. spacer 2.14|3986377|36|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.75

cctattagccggctggatcttttgcaggcagtgggc	CRISPR spacer
ttcgcgaaccggcaggatcttttgcaggcagtgcgc	Protospacer
..... *.***** ******************* **

21. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

22. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

23. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

24. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

25. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

26. spacer 1.49|3983980|37|NZ_CP042434|CRISPRCasFinder,CRT matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

taataaataccaatatcttttcataatttttatttta	CRISPR spacer
ccaccgagcccaatatcttttcatcatttttaattaa	Protospacer
. *. .*  *************** ******* ** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4211589 : 4268222

Agrobacterium_phage(25.0%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146784796.1\|4211589_4212774_-\|transposase	transposase	A0A0H3UZC2	Geobacillus_virus	1.5e-69	40.4
WP_158639586.1\|4213542_4214274_+\|transposase	transposase	NA	NA	NA	NA
WP_158639587.1\|4214266_4214788_+\|transposase	transposase	NA	NA	NA	NA
WP_146784805.1\|4215390_4216029_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_146784807.1\|4216031_4218575_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_146784810.1\|4218595_4220245_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_146784813.1\|4220262_4221540_+	hypothetical protein	NA	NA	NA	NA
WP_146784816.1\|4221907_4222357_-	META domain-containing protein	NA	NA	NA	NA
WP_146784819.1\|4226241_4226886_+	DnaJ domain-containing protein	A0A1V0SBY2	Catovirus	4.2e-10	49.3
WP_146784822.1\|4227016_4227568_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_146784825.1\|4227682_4228417_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_146784827.1\|4228596_4229220_-	hypothetical protein	NA	NA	NA	NA
WP_146784830.1\|4229237_4230623_-\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	2.5e-47	32.0
WP_146784833.1\|4230660_4231128_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_146784836.1\|4231402_4231735_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_146784838.1\|4231754_4233956_+	PspC domain-containing protein	NA	NA	NA	NA
WP_146784841.1\|4234029_4235166_-	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_146784845.1\|4235171_4236080_-	response regulator	NA	NA	NA	NA
WP_146784847.1\|4236089_4236830_-	hypothetical protein	NA	NA	NA	NA
WP_146784850.1\|4237010_4238072_-	histidinol-phosphate transaminase	A0A1X7QHI1	Faustovirus	1.1e-18	27.6
WP_146784853.1\|4238106_4239396_-	histidinol dehydrogenase	NA	NA	NA	NA
WP_146784856.1\|4239466_4240324_-	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_146784859.1\|4240711_4242154_+	hypothetical protein	NA	NA	NA	NA
WP_146784862.1\|4242180_4242720_+	hypothetical protein	NA	NA	NA	NA
WP_146784865.1\|4243051_4244167_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.1e-05	27.6
WP_146788511.1\|4244659_4245910_-	glycoside hydrolase family 27 protein	NA	NA	NA	NA
WP_146784868.1\|4246013_4247261_-	acetyl xylan esterase	NA	NA	NA	NA
WP_146784871.1\|4247319_4248597_-	N-acyl-D-glucosamine 2-epimerase	NA	NA	NA	NA
WP_146788514.1\|4248631_4249801_-	glycosidase	NA	NA	NA	NA
WP_146784874.1\|4249847_4251695_-	Na+:solute symporter	NA	NA	NA	NA
WP_146784877.1\|4251734_4252703_-	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_146784879.1\|4253224_4254100_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_146784883.1\|4254263_4255568_-	AAA family ATPase	NA	NA	NA	NA
WP_146784886.1\|4255849_4256269_-	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_146784889.1\|4256911_4259491_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
WP_146788517.1\|4259570_4260665_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA
WP_146784891.1\|4260795_4261821_-	aldo/keto reductase	NA	NA	NA	NA
WP_146784894.1\|4261984_4263016_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.8e-07	30.9
WP_146784897.1\|4263413_4264721_+	chloride channel protein	NA	NA	NA	NA
WP_146784900.1\|4266804_4267455_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.8e-33	46.5
WP_146784903.1\|4267535_4268222_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.4e-42	49.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042434

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection