Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017484 Mannheimia haemolytica strain 39433 chromosome, complete genome 3 crisprs cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK,RT 1 5 7 0

Results visualization

1. NZ_CP017484
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017484_1 1045830-1045904 Orphan NA
1 spacers
DinG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017484_2 1503131-1503760 TypeI NA
9 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017484_3 2080256-2080361 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NZ_CP017484.1 697669-697718 0 1.0
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NZ_CP017484.1 1706283-1706332 0 1.0
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NZ_CP017484.1 1240270-1240319 1 0.98

1. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to position: 697669-697718, mismatch: 0, identity: 1.0

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	Protospacer
**************************************************

2. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to position: 1706283-1706332, mismatch: 0, identity: 1.0

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	Protospacer
**************************************************

3. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to position: 1240270-1240319, mismatch: 1, identity: 0.98

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
*****************************.********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017484_2 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT 1503163-1503197 35 NC_028853 Mannheimia phage vB_MhS_535AP2, complete genome 31900-31934 0 1.0
NZ_CP017484_2 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT 1503163-1503197 35 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 33856-33890 0 1.0
NZ_CP017484_2 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT 1503163-1503197 35 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 33963-33997 0 1.0
NZ_CP017484_2 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR 1503297-1503330 34 NC_028853 Mannheimia phage vB_MhS_535AP2, complete genome 34963-34996 1 0.971
NZ_CP017484_2 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR 1503297-1503330 34 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 36919-36952 1 0.971
NZ_CP017484_2 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR 1503297-1503330 34 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 37026-37059 1 0.971
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NC_007800 Bibersteinia trehalosi plasmid pCCK13698, complete sequence 913-962 1 0.98
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NZ_CP018033 Glaesserella parasuis D74 plasmid pD74, complete sequence 6036-6085 2 0.96
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NZ_CP054196 Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence 1676-1725 2 0.96
NZ_CP017484_3 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder 2080284-2080333 50 NC_006829 Haemophilus parasuis plasmid pHS-Rec, complete sequence 8881-8930 2 0.96
NZ_CP017484_1 1.1|1045853|29|NZ_CP017484|CRISPRCasFinder 1045853-1045881 29 MH791397 UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome 22354-22382 5 0.828
NZ_CP017484_2 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT 1503163-1503197 35 NZ_CP020003 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence 42539-42573 10 0.714
NZ_CP017484_2 2.2|1503230|35|NZ_CP017484|CRISPRCasFinder,CRT 1503230-1503264 35 NZ_CP054028 Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence 627317-627351 10 0.714

1. spacer 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

2. spacer 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

3. spacer 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

4. spacer 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

5. spacer 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

6. spacer 2.3|1503297|34|NZ_CP017484|CRISPRCasFinder,CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

7. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to NC_007800 (Bibersteinia trehalosi plasmid pCCK13698, complete sequence) position: , mismatch: 1, identity: 0.98

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
*****************************.********************

8. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to NZ_CP018033 (Glaesserella parasuis D74 plasmid pD74, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

9. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to NZ_CP054196 (Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

10. spacer 3.1|2080284|50|NZ_CP017484|CRISPRCasFinder matches to NC_006829 (Haemophilus parasuis plasmid pHS-Rec, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

11. spacer 1.1|1045853|29|NZ_CP017484|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

tctttataccctagattagtatcaggtct	CRISPR spacer
gccttataccctagattattatgaggttt	Protospacer
 *.*************** *** ****.*

12. spacer 2.1|1503163|35|NZ_CP017484|CRISPRCasFinder,CRT matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
tctcttttgttcatcaacataaccataaacacgat	Protospacer
  *. ..*** **************.*******. 

13. spacer 2.2|1503230|35|NZ_CP017484|CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 10, identity: 0.714

tcgaaaatcttccacgcatttacgccgatgtcagt	CRISPR spacer
aagaaaatcttccacccatttacgctgatcctttg	Protospacer
  ************* *********.*** ..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 696648 : 746829 61 Mannheimia_phage(79.17%) terminase,head,integrase,plate,transposase,tail attL 745648:745707|attR 751732:752147
DBSCAN-SWA_2 999509 : 1006294 9 Mycobacterium_phage(16.67%) NA NA
DBSCAN-SWA_3 1316042 : 1393529 83 Mannheimia_phage(86.44%) tRNA,terminase,head,holin,portal,capsid,integrase,plate,transposase,tail attL 1318459:1318475|attR 1361927:1361943
DBSCAN-SWA_4 1425579 : 1481324 74 Mannheimia_phage(46.55%) head,integrase,terminase,holin attL 1428154:1428173|attR 1481476:1481495
DBSCAN-SWA_5 1634616 : 1683983 44 Mannheimia_phage(25.0%) tRNA,transposase,protease NA
DBSCAN-SWA_6 1925368 : 1968080 60 Mannheimia_phage(57.78%) terminase,holin,portal,protease,integrase,transposase,tail attL 1926482:1926497|attR 1966695:1966710
DBSCAN-SWA_7 2233553 : 2335484 120 Mannheimia_phage(86.42%) tRNA,terminase,holin,integrase,transposase,tail attL 2273587:2273603|attR 2333269:2333285
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage