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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017521 Mannheimia haemolytica strain 1584 chromosome, complete genome 3 crisprs cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,PD-DExK,RT 5 10 11 1

Results visualization

1. NZ_CP017521
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017521_1 917560-917634 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017521_2 1568928-1569042 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017521_3 1745522-1746422 TypeI NA
13 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 NZ_CP017521.1 1565869-1565905 0 1.0
NZ_CP017521_3 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder 1745753-1745789 37 NZ_CP017521.1 1617340-1617376 0 1.0
NZ_CP017521_3 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder 1745956-1745989 34 NZ_CP017521.1 1625520-1625553 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 NZ_CP017521.1 1565870-1565905 0 1.0
NZ_CP017521_3 3.24|1746289|34|NZ_CP017521|CRISPRCasFinder 1746289-1746322 34 NZ_CP017521.1 2716684-2716717 0 1.0

1. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to position: 1565869-1565905, mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

2. spacer 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder matches to position: 1617340-1617376, mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

3. spacer 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder matches to position: 1625520-1625553, mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

4. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to position: 1565870-1565905, mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

5. spacer 3.24|1746289|34|NZ_CP017521|CRISPRCasFinder matches to position: 2716684-2716717, mismatch: 0, identity: 1.0

ccttatcttaactgactccggaggtattcaagaa	CRISPR spacer
ccttatcttaactgactccggaggtattcaagaa	Protospacer
**********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 NC_008201 Mannheimia phage phiMHaA1, complete genome 15663-15721 0 1.0
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 15663-15721 0 1.0
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 15663-15721 0 1.0
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 15863-15921 0 1.0
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 16092-16150 0 1.0
NZ_CP017521_2 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder 1568956-1569014 59 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 15663-15721 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18776 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18851 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18816 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19012 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19177 0 1.0
NZ_CP017521_3 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR 1746220-1746256 37 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18776 0 1.0
NZ_CP017521_3 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder 1745753-1745789 37 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27263-27299 0 1.0
NZ_CP017521_3 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder 1745753-1745789 37 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27371-27407 0 1.0
NZ_CP017521_3 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder 1745956-1745989 34 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19193-19226 0 1.0
NZ_CP017521_3 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder 1745956-1745989 34 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19018-19051 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18775 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18850 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18815 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19011 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19176 0 1.0
NZ_CP017521_3 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder 1746221-1746256 36 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18775 0 1.0
NZ_CP017521_3 3.4|1745752|38|NZ_CP017521|CRT,PILER-CR 1745752-1745789 38 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27262-27299 1 0.974
NZ_CP017521_3 3.4|1745752|38|NZ_CP017521|CRT,PILER-CR 1745752-1745789 38 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27370-27407 1 0.974
NZ_CP017521_3 3.7|1745955|35|NZ_CP017521|CRT,PILER-CR 1745955-1745989 35 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19192-19226 1 0.971
NZ_CP017521_3 3.7|1745955|35|NZ_CP017521|CRT,PILER-CR 1745955-1745989 35 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19017-19051 1 0.971
NZ_CP017521_1 1.1|917583|29|NZ_CP017521|CRISPRCasFinder 917583-917611 29 MH791397 UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome 22354-22382 5 0.828
NZ_CP017521_3 3.20|1746022|35|NZ_CP017521|CRISPRCasFinder 1746022-1746056 35 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 368774-368808 11 0.686
NZ_CP017521_3 3.22|1746155|34|NZ_CP017521|CRISPRCasFinder 1746155-1746188 34 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 710003-710036 11 0.676

1. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

2. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

3. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

4. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

5. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

6. spacer 2.1|1568956|59|NZ_CP017521|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

7. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

8. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

9. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

10. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

11. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

12. spacer 3.11|1746220|37|NZ_CP017521|CRT,PILER-CR matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ggtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
ggtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
*************************************

13. spacer 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

14. spacer 3.16|1745753|37|NZ_CP017521|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
ttggttataattaaaattgattgcggtacacgcccct	Protospacer
*************************************

15. spacer 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

16. spacer 3.19|1745956|34|NZ_CP017521|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
ctctagcattaaaatccaatcggtaaacggtaaa	Protospacer
**********************************

17. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

18. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

19. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

20. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

21. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

22. spacer 3.23|1746221|36|NZ_CP017521|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtgcaaactactccgataaccgaagtagcagcggtg	CRISPR spacer
gtgcaaactactccgataaccgaagtagcagcggtg	Protospacer
************************************

23. spacer 3.4|1745752|38|NZ_CP017521|CRT,PILER-CR matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

24. spacer 3.4|1745752|38|NZ_CP017521|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.974

cttggttataattaaaattgattgcggtacacgcccct	CRISPR spacer
attggttataattaaaattgattgcggtacacgcccct	Protospacer
 *************************************

25. spacer 3.7|1745955|35|NZ_CP017521|CRT,PILER-CR matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

26. spacer 3.7|1745955|35|NZ_CP017521|CRT,PILER-CR matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

cctctagcattaaaatccaatcggtaaacggtaaa	CRISPR spacer
actctagcattaaaatccaatcggtaaacggtaaa	Protospacer
 **********************************

27. spacer 1.1|917583|29|NZ_CP017521|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

agacctgatactaatctagggtataaaga	CRISPR spacer
aaacctcataataatctagggtataaggc	Protospacer
*.**** *** ***************.* 

28. spacer 3.20|1746022|35|NZ_CP017521|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

tttaattaataaaatagctttagctttagatttaa	CRISPR spacer
ccaatctaataaaataattttagctttagatcggg	Protospacer
.. * .**********..*************. ..

29. spacer 3.22|1746155|34|NZ_CP017521|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 11, identity: 0.676

tatcatttatcgcccgaaaaatccaaaaatcgca	CRISPR spacer
acaagcttatcgcccaaaaaatccaacaataaaa	Protospacer
    ..*********.********** *** . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 43992 : 51536 11 Mannheimia_phage(81.82%) tail,transposase NA
DBSCAN-SWA_2 577791 : 661817 92 Mannheimia_phage(17.02%) head,tRNA,plate,tail,protease,transposase NA
DBSCAN-SWA_3 917846 : 973811 59 Mannheimia_phage(26.67%) integrase,transposase attL 940683:940698|attR 974712:974727
DBSCAN-SWA_4 1073657 : 1080442 9 Mycobacterium_phage(16.67%) NA NA
DBSCAN-SWA_5 1156428 : 1174159 19 Staphylococcus_phage(28.57%) integrase,transposase attL 1157161:1157175|attR 1175034:1175048
DBSCAN-SWA_6 1254581 : 1362521 120 Mannheimia_phage(81.58%) terminase,tRNA,integrase,tail,protease,capsid,transposase attL 1247101:1247160|attR 1301374:1301463
DBSCAN-SWA_7 1541126 : 1670093 154 Mannheimia_phage(92.8%) portal,terminase,tRNA,head,plate,integrase,tail,holin,capsid,transposase attL 1662140:1662158|attR 1678909:1678927
DBSCAN-SWA_8 1675666 : 1763719 99 Mannheimia_phage(56.36%) portal,terminase,tRNA,integrase,tail,holin,transposase attL 1684202:1684235|attR 1707515:1707548
DBSCAN-SWA_9 1889122 : 1899439 14 Mannheimia_phage(50.0%) NA NA
DBSCAN-SWA_10 1902672 : 1909616 9 Mannheimia_phage(60.0%) tail NA
DBSCAN-SWA_11 2342839 : 2350994 12 Synechococcus_phage(16.67%) integrase,terminase attL 2346045:2346104|attR 2351410:2351483
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP017521.1|WP_006250250.1|1658290_1658521_+|hypothetical-protein 1658290_1658521_+ 76 aa aa NA NA NA 1541126-1670093 yes