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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017529 Mannheimia haemolytica strain 1560 chromosome, complete genome 3 crisprs cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,RT 4 15 8 1

Results visualization

1. NZ_CP017529
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017529_1 904787-904861 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017529_2 1139434-1139508 Orphan NA
1 spacers
DinG

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017529_3 1755109-1756211 TypeI NA
16 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017529_3 3.2|1755209|34|NZ_CP017529|CRISPRCasFinder 1755209-1755242 34 NZ_CP017529.1 2649201-2649234 0 1.0
NZ_CP017529_3 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder 1755275-1755309 35 NZ_CP017529.1 1288039-1288073 0 1.0
NZ_CP017529_3 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder 1755944-1755980 37 NZ_CP017529.1 1551063-1551099 0 1.0
NZ_CP017529_3 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT 1755275-1755310 36 NZ_CP017529.1 1288039-1288074 0 1.0

1. spacer 3.2|1755209|34|NZ_CP017529|CRISPRCasFinder matches to position: 2649201-2649234, mismatch: 0, identity: 1.0

ttcttgaatacctccggagtcagttaagataagg	CRISPR spacer
ttcttgaatacctccggagtcagttaagataagg	Protospacer
**********************************

2. spacer 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder matches to position: 1288039-1288073, mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

3. spacer 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder matches to position: 1551063-1551099, mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

4. spacer 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT matches to position: 1288039-1288074, mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017529_3 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder 1755275-1755309 35 NC_028853 Mannheimia phage vB_MhS_535AP2, complete genome 11457-11491 0 1.0
NZ_CP017529_3 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder 1755275-1755309 35 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 11457-11491 0 1.0
NZ_CP017529_3 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder 1755275-1755309 35 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 11439-11473 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18775 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18850 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18815 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19011 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19176 0 1.0
NZ_CP017529_3 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder 1755342-1755377 36 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18775 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 NC_008201 Mannheimia phage phiMHaA1, complete genome 18136-18170 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18136-18170 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18136-18170 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18336-18370 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18565-18599 0 1.0
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18136-18170 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 NC_008201 Mannheimia phage phiMHaA1, complete genome 18391-18424 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18466-18499 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18431-18464 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18627-18660 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18792-18825 0 1.0
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18391-18424 0 1.0
NZ_CP017529_3 3.10|1755744|34|NZ_CP017529|CRISPRCasFinder 1755744-1755777 34 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19193-19226 0 1.0
NZ_CP017529_3 3.10|1755744|34|NZ_CP017529|CRISPRCasFinder 1755744-1755777 34 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19018-19051 0 1.0
NZ_CP017529_3 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder 1755944-1755980 37 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27263-27299 0 1.0
NZ_CP017529_3 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder 1755944-1755980 37 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27371-27407 0 1.0
NZ_CP017529_3 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT 1755275-1755310 36 NC_028853 Mannheimia phage vB_MhS_535AP2, complete genome 11457-11492 0 1.0
NZ_CP017529_3 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT 1755275-1755310 36 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 11457-11492 0 1.0
NZ_CP017529_3 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT 1755275-1755310 36 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 11439-11474 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 NC_008201 Mannheimia phage phiMHaA1, complete genome 18740-18776 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18815-18851 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18780-18816 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18976-19012 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 19141-19177 0 1.0
NZ_CP017529_3 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT 1755342-1755378 37 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18740-18776 0 1.0
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 NC_008201 Mannheimia phage phiMHaA1, complete genome 18136-18171 1 0.972
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18136-18171 1 0.972
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18136-18171 1 0.972
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18336-18371 1 0.972
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18565-18600 1 0.972
NZ_CP017529_3 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT 1755410-1755445 36 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18136-18171 1 0.972
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 NC_008201 Mannheimia phage phiMHaA1, complete genome 18391-18425 1 0.971
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 DQ426905 Bacteriophage phi-MhaA1-BAA410, complete genome 18466-18500 1 0.971
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 KP137432 Mannheimia phage vB_MhM_535AP1, complete genome 18431-18465 1 0.971
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 JN255163 Mannheimia phage vB_MhM_1152AP, complete genome 18627-18661 1 0.971
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 KP137438 Mannheimia phage vB_MhM_2256AP1, complete genome 18792-18826 1 0.971
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 DQ426904 Bacteriophage phi-MhaA1-PHL101, complete genome 18391-18425 1 0.971
NZ_CP017529_3 3.25|1755744|35|NZ_CP017529|PILER-CR,CRT 1755744-1755778 35 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 19192-19226 1 0.971
NZ_CP017529_3 3.25|1755744|35|NZ_CP017529|PILER-CR,CRT 1755744-1755778 35 NC_028743 Mannheimia phage vB_MhS_587AP2, complete genome 19017-19051 1 0.971
NZ_CP017529_3 3.28|1755944|38|NZ_CP017529|PILER-CR,CRT 1755944-1755981 38 KP137439 Mannheimia phage vB_MhS_3927AP1, complete genome 27262-27299 1 0.974
NZ_CP017529_3 3.28|1755944|38|NZ_CP017529|PILER-CR,CRT 1755944-1755981 38 NC_028956 Mannheimia phage vB_MhS_1152AP2, complete genome 27370-27407 1 0.974
NZ_CP017529_1 1.1|904810|29|NZ_CP017529|CRISPRCasFinder 904810-904838 29 MH791397 UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome 22354-22382 5 0.828
NZ_CP017529_2 2.1|1139457|29|NZ_CP017529|CRISPRCasFinder 1139457-1139485 29 MH791397 UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome 22354-22382 5 0.828
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 NC_047750 Mannheimia phage vB_MhM_1127AP1, complete genome 19383-19416 6 0.824
NZ_CP017529_3 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder 1755477-1755510 34 NC_028898 Mannheimia phage vB_MhM_587AP1, complete genome 19392-19425 6 0.824
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 NC_047750 Mannheimia phage vB_MhM_1127AP1, complete genome 19383-19417 7 0.8
NZ_CP017529_3 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT 1755477-1755511 35 NC_028898 Mannheimia phage vB_MhM_587AP1, complete genome 19392-19426 7 0.8
NZ_CP017529_3 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder 1755410-1755444 35 HM144385 Brochothrix phage NF5, complete genome 32998-33032 10 0.714
NZ_CP017529_3 3.9|1755677|35|NZ_CP017529|CRISPRCasFinder 1755677-1755711 35 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 368774-368808 11 0.686

1. spacer 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

2. spacer 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

3. spacer 3.3|1755275|35|NZ_CP017529|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

4. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

5. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

6. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

7. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

8. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

9. spacer 3.4|1755342|36|NZ_CP017529|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

10. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

11. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

12. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

13. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

14. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

15. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

16. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

17. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

18. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

19. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

20. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

21. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

22. spacer 3.10|1755744|34|NZ_CP017529|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

tttaccgtttaccgattggattttaatgctagag	CRISPR spacer
tttaccgtttaccgattggattttaatgctagag	Protospacer
**********************************

23. spacer 3.10|1755744|34|NZ_CP017529|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

tttaccgtttaccgattggattttaatgctagag	CRISPR spacer
tttaccgtttaccgattggattttaatgctagag	Protospacer
**********************************

24. spacer 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

25. spacer 3.13|1755944|37|NZ_CP017529|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

26. spacer 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

27. spacer 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

28. spacer 3.18|1755275|36|NZ_CP017529|PILER-CR,CRT matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

29. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

30. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

31. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

32. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

33. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

34. spacer 3.19|1755342|37|NZ_CP017529|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

35. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

36. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

37. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

38. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

39. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

40. spacer 3.20|1755410|36|NZ_CP017529|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

41. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

42. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

43. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

44. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

45. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

46. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
********************************** 

47. spacer 3.25|1755744|35|NZ_CP017529|PILER-CR,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

tttaccgtttaccgattggattttaatgctagagg	CRISPR spacer
tttaccgtttaccgattggattttaatgctagagt	Protospacer
********************************** 

48. spacer 3.25|1755744|35|NZ_CP017529|PILER-CR,CRT matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

tttaccgtttaccgattggattttaatgctagagg	CRISPR spacer
tttaccgtttaccgattggattttaatgctagagt	Protospacer
********************************** 

49. spacer 3.28|1755944|38|NZ_CP017529|PILER-CR,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.974

aggggcgtgtaccgcaatcaattttaattataaccaag	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaat	Protospacer
************************************* 

50. spacer 3.28|1755944|38|NZ_CP017529|PILER-CR,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.974

aggggcgtgtaccgcaatcaattttaattataaccaag	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaat	Protospacer
************************************* 

51. spacer 1.1|904810|29|NZ_CP017529|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

agacctgatactaatctagggtataaaga	CRISPR spacer
aaacctcataataatctagggtataaggc	Protospacer
*.**** *** ***************.* 

52. spacer 2.1|1139457|29|NZ_CP017529|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

tctttataccctagattagtatcaggtct	CRISPR spacer
gccttataccctagattattatgaggttt	Protospacer
 *.*************** *** ****.*

53. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 6, identity: 0.824

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcg	Protospacer
.  .********.************.********

54. spacer 3.6|1755477|34|NZ_CP017529|CRISPRCasFinder matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 6, identity: 0.824

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcg	Protospacer
.  .********.************.********

55. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 7, identity: 0.8

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcgg	Protospacer
.  .********.************.******** 

56. spacer 3.21|1755477|35|NZ_CP017529|PILER-CR,CRT matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 7, identity: 0.8

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcgg	Protospacer
.  .********.************.******** 

57. spacer 3.5|1755410|35|NZ_CP017529|CRISPRCasFinder matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 10, identity: 0.714

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
atcgaccagtaacacgaccagatgttgataattat	Protospacer
.* *  *********** ******.****** ...

58. spacer 3.9|1755677|35|NZ_CP017529|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

ttaaatctaaagctaaagctattttattaattaaa	CRISPR spacer
cccgatctaaagctaaaattattttattagattgg	Protospacer
.. .*************..**********. * ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 43893 : 51220 10 Mannheimia_phage(80.0%) transposase,tail NA
DBSCAN-SWA_2 568786 : 648930 84 Mannheimia_phage(17.07%) head,tail,tRNA,protease,transposase,plate NA
DBSCAN-SWA_3 1060901 : 1067686 9 Mycobacterium_phage(16.67%) NA NA
DBSCAN-SWA_4 1208826 : 1304015 117 Mannheimia_phage(87.5%) terminase,integrase,capsid,tail,tRNA,protease,transposase attL 1212115:1212174|attR 1265119:1265209
DBSCAN-SWA_5 1551342 : 1612567 79 Mannheimia_phage(94.52%) terminase,transposase,tail NA
DBSCAN-SWA_6 1689907 : 1805698 110 Mannheimia_phage(44.07%) terminase,integrase,tail,tRNA,holin,transposase,portal attL 1768195:1768212|attR 1814156:1814173
DBSCAN-SWA_7 1816819 : 1862427 57 Mannheimia_phage(50.0%) tRNA,protease,integrase,tail attL 1830052:1830068|attR 1836919:1836935
DBSCAN-SWA_8 2275538 : 2283693 12 Synechococcus_phage(16.67%) terminase,integrase attL 2278744:2278803|attR 2284109:2284182
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP017529.1|WP_006250250.1|1263897_1264128_-|hypothetical-protein 1263897_1264128_- 76 aa aa NA NA NA 1208826-1304015 yes