CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017530	Mannheimia haemolytica strain 1532 chromosome, complete genome	3 crisprs	cas3,PD-DExK,DEDDh,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	10	18	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017530_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017530_1

1240393-1241627

TypeI

Consensus_repeat	Method
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	CRISPRCasFinder
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	PILER-CR
CAGCCACCTACGCGTGGCTGNGAATTGAAAC	CRT

18 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4

The CRISPR arrays of NZ_CP017530_1

>merge|NZ_CP017530|1|1240393-1241627|CRISPRCasFinder,PILER-CR,CRT
CCAGCCACCTACGCGTGGCTGCGAATTGAAACCCTATAACGAGCAATGGCATTTTGATCTACGGTAAACCAGCCACCTACGCGTGGCTGCGAATTGAAACTTCTTGAATACCTCCGGAGTCAGTTAAGATAAGGCCAGCCACCTACGCGTGGCTGCGAATTGAAACCTTTTTCAAGAATCAAGATTAAGAGATCCAAACAACCAGCCACCTACGCGTGGCTGCGAATTGAAACTCCGACACTTGCCCGTCTGCACTCGCCCTAGTGCCCAGCCACCTACGCGTGGCTGCGAATTGAAACCACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCACCCAGCCACCTACGCGTGGCTGCGAATTGAAACGTGGCACAGTAACACGAGCAGATGCTGATAAACGCCCAGCCACCTACGCGTGGCTGCGAATTGAAACCAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCGCCAGCCACCTACGCGTGGCTGCGAATTGAAACTACACTTATTGCCATAGGGTAGTAGTAATCTTTTACCCAGCCACCTACGCGTGGCTGCGAATTGAAACTGCGATTTTTGGATTTTTCGGGCGATAAATGATACCAGCCACCTACGCGTGGCTGTGAATTGAAACTCGTGGCTGGTTATACAAAGAAAAGCATTGTTGGGCAGCCACCTACGCGTGGCTGTGAATTGAAACTTAAATCTAAAGCTAAAGCTATTTTATTAATTAAAGCAGCCACCTACGCGTGGCTGTGAATTGAAACTTTACCGTTTACCGATTGGATTTTAATGCTAGAGGCAGCCACCTACGCGTGGCTGTGAATTGAAACCCTAAATTGCCGTAAAAATCTGCCATTAGCTACGCGCAGCCACCTACGCGTGGCTGTGAATTGAAACCTCATAACGAATCCAATCCTGTTCGGTTAATCCCCGCAGCCACCTACGCGTGGCTGTGAATTGAAACAGGGGCGTGTACCGCAATCAATTTTAATTATAACCAAGCAGCCACCTACGCGTGGCTGTGAATTGAAACTTTATCTGTTGCGGTCAATTGTATATCTTGAATTTGCAGCCACCTACGCGTGGCTGTGAATTGAAACCTCGTCTTGAATTGGAAAATCAAGGGCGACAATAGGCAGCCACCTTCGCGTGGCTGTGTATTGAAACGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAAT

>NZ_CP017530|1|1|1240393-1241562|CRISPRCasFinder
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	TCCGACACTTGCCCGTCTGCACTCGCCCTAGTGC
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC
CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA
CCAGCCACCTACGCGTGGCTGTGAATTGAAAC	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT
GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG
GCAGCCACCTTCGCGTGGCTGTGTATTGAAAC

>NZ_CP017530|1|1|1240394-1241562|PILER-CR
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAAC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGGC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAAC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TCCGACACTTGCCCGTCTGCACTCGCCCTAGTGCC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCACC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	GTGGCACAGTAACACGAGCAGATGCTGATAAACGCC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCGC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTACC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TGCGATTTTTGGATTTTTCGGGCGATAAATGATAC
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGGG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAAG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTACCGTTTACCGATTGGATTTTAATGCTAGAGG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGCG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCCG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAAG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTTG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAGG
CAGCCACCTTCGCGTGGCTGTGTATTGAAAC

>NZ_CP017530|1|1|1240394-1241627|CRT
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAAC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGGC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAAC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TCCGACACTTGCCCGTCTGCACTCGCCCTAGTGCC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCACC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	GTGGCACAGTAACACGAGCAGATGCTGATAAACGCC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCGC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTACC
CAGCCACCTACGCGTGGCTGCGAATTGAAAC	TGCGATTTTTGGATTTTTCGGGCGATAAATGATAC
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGGG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAAG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTACCGTTTACCGATTGGATTTTAATGCTAGAGG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGCG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCCG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAAG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTTG
CAGCCACCTACGCGTGGCTGTGAATTGAAAC	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAGG
CAGCCACCTTCGCGTGGCTGTGTATTGAAAC	GGTGTACCCACAAATCCTATGTTTTCGCCATTGG
CTGCTACCTTCGCATCAATATATATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017530.1\|WP_006248820.1\|1251350_1252541_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP017530.1\|WP_006248118.1\|1241811_1243287_+\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP017530.1\|WP_006248814.1\|1246361_1247045_+\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP017530.1\|WP_006253506.1\|1229718_1230855_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP017530.1\|WP_134983790.1\|1231013_1231475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248113.1\|1238828_1239842_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017530.1\|WP_006248114.1\|1239908_1240202_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017530.1\|WP_006248119.1\|1243440_1244943_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP017530.1\|WP_134916814.1\|1238432_1238726_+\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248107.1\|1233457_1234135_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP017530.1\|WP_006248816.1\|1247990_1248392_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|182380
NZ_CP017530.1\|WP_006248111.1\|1237511_1238432_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006253509.1\|1236810_1237485_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP017530.1\|WP_006248821.1\|1252542_1253349_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
NZ_CP017530.1\|WP_006248812.1\|1245020_1246094_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP017530.1\|WP_006248815.1\|1247081_1247921_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP017530.1\|WP_031192850.1\|1234156_1235938_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP017530.1\|WP_006248819.1\|1250586_1251339_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP017530.1\|WP_006248109.1\|1235947_1236811_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP017530.1\|WP_006253512.1\|1248828_1250361_+\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671

Protein	Function_ID	Function_description	E-value
NZ_CP017530.1\|WP_006248820.1\|1251350_1252541_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP017530.1\|WP_006248118.1\|1241811_1243287_+\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP017530.1\|WP_006248814.1\|1246361_1247045_+\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	6.07933e-73
NZ_CP017530.1\|WP_006253506.1\|1229718_1230855_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.08341e-47
NZ_CP017530.1\|WP_006248113.1\|1238828_1239842_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP017530.1\|WP_006248114.1\|1239908_1240202_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.20021e-33
NZ_CP017530.1\|WP_006248119.1\|1243440_1244943_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017530.1\|WP_006248107.1\|1233457_1234135_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.38632e-113
NZ_CP017530.1\|WP_006248816.1\|1247990_1248392_-\|H-NS-histone-family-protein	gnl\|CDD\|182380	PRK10328, PRK10328, DNA-binding protein StpA.	2.45258e-33
NZ_CP017530.1\|WP_006248821.1\|1252542_1253349_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	4.20082e-123
NZ_CP017530.1\|WP_006253509.1\|1236810_1237485_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.93186e-40
NZ_CP017530.1\|WP_006248812.1\|1245020_1246094_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP017530.1\|WP_006248815.1\|1247081_1247921_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.87146e-173
NZ_CP017530.1\|WP_031192850.1\|1234156_1235938_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP017530.1\|WP_006248819.1\|1250586_1251339_+\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.96029e-145
NZ_CP017530.1\|WP_006248109.1\|1235947_1236811_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.47515e-155
NZ_CP017530.1\|WP_006253512.1\|1248828_1250361_+\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	3.89543e-96

>NZ_CP017530.1|WP_006248114.1|1239908_1240202_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVTPAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL
>NZ_CP017530.1|WP_006248113.1|1238828_1239842_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGIEGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGVGLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAVTLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP017530.1|WP_134916814.1|1238432_1238726_+|DUF3800-domain-containing-protein
MQHNKISFEDSVNNSLIQASDVIAGLLAGIGEQIQKYNEQEFYNEFISKLNPNHLENLKLLAQIYQNSIYKSNGLFTHFFAPLSFICRLQNFIFSYK
>NZ_CP017530.1|WP_006248111.1|1237511_1238432_+|hypothetical-protein
MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGSNFNRTISSHIGVPPVFVLGGIAQISNANLIAPDWRKLLHLQNKELKFSKIGKNFFNKLGSKELRKVLEWINENNLCIHFALYDWVYFYDVDIIDSALIESDVCSVWKYLSEKIGNSNRYKEIKDYQRKVGLDKQSDDIIYLFYIKELLHDFIINNLQWFLSEIYNNHYKKIDNQEKTVFLDNLYNMIKGSEKYKVLEFFLEKIDRNKYLSFIYDKLDSEMNEDKTFIMLVEDMSPPYQNYLNTFPLSEFYFDKGMEHVFIDY
>NZ_CP017530.1|WP_006253509.1|1236810_1237485_+|CRISPR-associated-protein-Cas4
MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIHNEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDLKTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIFSTELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVGVFGSLL
>NZ_CP017530.1|WP_006248109.1|1235947_1236811_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDVCLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAREITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTEGLTGVTVEELL
>NZ_CP017530.1|WP_031192850.1|1234156_1235938_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSKGNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAKDQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDANVVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVFGGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDASTVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELSENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLLLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKAVLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDEQGRFAIGYYHQKQSYFAKKETTESIEN
>NZ_CP017530.1|WP_006248107.1|1233457_1234135_+|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQQRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFAANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPFYAEEVKS
>NZ_CP017530.1|WP_134983790.1|1231013_1231475_+|hypothetical-protein
MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK
>NZ_CP017530.1|WP_006253506.1|1229718_1230855_+|transposase
MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYEQDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKFKKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFVSIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKNKVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSAKGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPCCNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA
>NZ_CP017530.1|WP_006248118.1|1241811_1243287_+|ribonuclease-G
MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQRVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM
>NZ_CP017530.1|WP_006248119.1|1243440_1244943_+|lysine--tRNA-ligase
MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK
>NZ_CP017530.1|WP_006248812.1|1245020_1246094_-|homoserine-O-acetyltransferase
MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLLCHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINPKTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLTYRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSDFGHDAFLVDYDFFEPMIKAGLAK
>NZ_CP017530.1|WP_006248814.1|1246361_1247045_+|DUF218-domain-containing-protein
MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDSLTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVNQLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPFTIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEPESLEDIRSK
>NZ_CP017530.1|WP_006248815.1|1247081_1247921_-|formyltetrahydrofolate-deformylase
MLQQHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENETKRFFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL
>NZ_CP017530.1|WP_006248816.1|1247990_1248392_-|H-NS-histone-family-protein
MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALDSGKKLEDFAI
>NZ_CP017530.1|WP_006253512.1|1248828_1250361_+|Na+/H+-antiporter-NhaC-family-protein
MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFMLTNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAFANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMKTGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMAFSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEKKH
>NZ_CP017530.1|WP_006248819.1|1250586_1251339_+|SDR-family-oxidoreductase
MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQFGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQMIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVLWLNQQPEHVNINRVEVMPVAQTSSALNVARNI
>NZ_CP017530.1|WP_006248820.1|1251350_1252541_+|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQAEFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVQKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQILAKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEALEAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKILNGGE
>NZ_CP017530.1|WP_006248821.1|1252542_1253349_+|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNGADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLCANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQNTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKPEQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK

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Crispr_ID: NZ_CP017530_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017530_2

1547660-1547774

Orphan

Consensus_repeat	Method
GGATAAATCGTAATAATTTCGCCACTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017530_2

>merge|NZ_CP017530|2|1547660-1547774|CRISPRCasFinder
GGATAAATCGTAATAATTTCGCCACTGTTTGTTGCACTAAATAAATCCATTTTGCTTTTAATGACAATAACAGGGAGCTTTTTAGGTGGATAAATCGTAATAATTTCGCCACTGT

>NZ_CP017530|2|2|1547660-1547774|CRISPRCasFinder
GGATAAATCGTAATAATTTCGCCACTGT	TTGTTGCACTAAATAAATCCATTTTGCTTTTAATGACAATAACAGGGAGCTTTTTAGGT
GGATAAATCGTAATAATTTCGCCACTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017530.1\|WP_006248190.1\|1550769_1553682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226450
NZ_CP017530.1\|WP_006248174.1\|1540426_1541665_-\|phage-late-control-D-family-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP017530.1\|WP_006248210.1\|1555352_1555808_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274606
NZ_CP017530.1\|WP_075270712.1\|1542514_1542631_-\|GpE-family-phage-tail-protein	unknown	unknown	gnl\|CDD\|368955
NZ_CP017530.1\|WP_006253663.1\|1542103_1542451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248192.1\|1554049_1554508_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_CP017530.1\|WP_006248193.1\|1554500_1554986_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|369126
NZ_CP017530.1\|WP_006248179.1\|1543562_1544744_-\|phage-tail-sheath-protein	unknown	unknown	gnl\|CDD\|164955
NZ_CP017530.1\|WP_006248194.1\|1554982_1555204_-\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
NZ_CP017530.1\|WP_006248181.1\|1545121_1545364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377774
NZ_CP017530.1\|WP_006248188.1\|1549514_1550120_-\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_CP017530.1\|WP_147036310.1\|1541664_1542102_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_CP017530.1\|WP_006248173.1\|1539437_1540244_+\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248187.1\|1549179_1549515_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|134016
NZ_CP017530.1\|WP_006248191.1\|1553720_1553999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248178.1\|1543047_1543554_-\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|164995
NZ_CP017530.1\|WP_006248186.1\|1548265_1549183_-\|baseplate-assembly-protein	unknown	unknown	gnl\|CDD\|164963
NZ_CP017530.1\|WP_006250779.1\|1550248_1550536_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP017530.1\|WP_147036312.1\|1545364_1547644_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|372197
NZ_CP017530.1\|WP_006248177.1\|1542654_1542969_-\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397

Protein	Function_ID	Function_description	E-value
NZ_CP017530.1\|WP_006248190.1\|1550769_1553682_-\|hypothetical-protein	gnl\|CDD\|226450	COG3941, COG3941, Mu-like prophage protein [General function prediction only].	4.7473e-16
NZ_CP017530.1\|WP_006248174.1\|1540426_1541665_-\|phage-late-control-D-family-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	2.56135e-176
NZ_CP017530.1\|WP_006248210.1\|1555352_1555808_-\|hypothetical-protein	gnl\|CDD\|274606	TIGR03495, Probable_spanin_inner_membrane_subunit, phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.	1.16398e-05
NZ_CP017530.1\|WP_075270712.1\|1542514_1542631_-\|GpE-family-phage-tail-protein	gnl\|CDD\|368955	pfam06528, Phage_P2_GpE, Phage P2 GpE. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.	4.4762e-13
NZ_CP017530.1\|WP_006248192.1\|1554049_1554508_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	2.26381e-46
NZ_CP017530.1\|WP_006248193.1\|1554500_1554986_-\|phage-tail-protein	gnl\|CDD\|369126	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR). This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.	1.06418e-48
NZ_CP017530.1\|WP_006248179.1\|1543562_1544744_-\|phage-tail-sheath-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	0
NZ_CP017530.1\|WP_006248194.1\|1554982_1555204_-\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	2.4799e-22
NZ_CP017530.1\|WP_006248181.1\|1545121_1545364_-\|hypothetical-protein	gnl\|CDD\|377774	pfam07087, DUF1353, Protein of unknown function (DUF1353). This family consists of several hypothetical bacterial proteins of around 100 residues in length. The function of this family is unknown.	1.08055e-05
NZ_CP017530.1\|WP_147036312.1\|1545364_1547644_-\|phage-tail-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	4.36205e-64
NZ_CP017530.1\|WP_147036310.1\|1541664_1542102_-\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	1.46486e-45
NZ_CP017530.1\|WP_006248187.1\|1549179_1549515_-\|hypothetical-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	4.2175e-51
NZ_CP017530.1\|WP_006248178.1\|1543047_1543554_-\|phage-major-tail-tube-protein	gnl\|CDD\|164995	PHA02600, FII, major tail tube protein; Provisional.	6.87602e-92
NZ_CP017530.1\|WP_006248186.1\|1548265_1549183_-\|baseplate-assembly-protein	gnl\|CDD\|164963	PHA02568, J, baseplate assembly protein; Provisional.	2.51993e-162
NZ_CP017530.1\|WP_006250779.1\|1550248_1550536_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	2.20246e-07
NZ_CP017530.1\|WP_006248188.1\|1549514_1550120_-\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	6.91574e-54
NZ_CP017530.1\|WP_006248177.1\|1542654_1542969_-\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	1.80603e-05

>NZ_CP017530.1|WP_147036312.1|1545364_1547644_-|phage-tail-protein
MEQKYKTILTHHGERVIVEALANKIPVPLKEMAIGDGNGSSITPSASQTTLVREVYRAEITDLLEDPQNRHQMIAELLIPENVGGFIVREIGLFDEQGGLVAVANCPENYKPVLEQGSGKVQYYRMILQVSSSDAVTLSINNNIVYATRTEFNEFVNNLSSPDGYKHIGRCKSVAELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKRVDLSHLTLFDFGAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVQILGNKTGKLVLGAGIQQAEAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHIDNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQSYCGSGNAGHYLCTKVKGVRFFNNIAIGGRNVSAYGATSCFDIFILGNREQGMAVTTVDVEAGVQVEDVQTGECVVANNICSHDIWMSGAKNAIINSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKYGSFDNPSLFIDNINFINNILEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLARNNPCLNLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQEWQKMPFDRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNLYQLRLLINNEEKERLINQSVSPKNSKSNTNGMTTINFDTVVYLKVGDIVDLQYKTTHELTLLSDSFLSQIYVTQEF
>NZ_CP017530.1|WP_006248181.1|1545121_1545364_-|hypothetical-protein
MTKKHYCTGWRSAPANINSCCHQHDRDYGIRGTVTRADADKRLRECMIKNGNPIRAWLFWLVVRAFGWRFYKNKEIKIEK
>NZ_CP017530.1|WP_006248179.1|1543562_1544744_-|phage-tail-sheath-protein
MSILDTYLHGVEVVEVNAGGVTISTAATSVIGVVCTGDQADAETFPLNTPVLITNPLNYLEKAGSTGTLRRTLNSIGSIVKTPTVIVRVAESDDSDTLTANIVGTQENGKFTGIKALLTAQSTVFVKPKLLCVPQHDNQAVATELLSVAKKLNAFAFISDNGATTKEQAYTYRQNFSQREGMMIFGDWKSYNTDKKAYDTDYAVARACALQAYIDKTVGWHKNISNVELDGVTGITKAVEFDINESSTEANYLNEKGITICLNHNGFRYWGSRTLATDTRWAFQQSVRTAQIIKETIGAGLAWAVDMPLTPLRVKTMLEAINNKLRSWASGDDPRILGARVWVAEEITADIIKSGKFVIKYDYHWIPSLESLGLEQRVNDEYVVDLVNTLKAL
>NZ_CP017530.1|WP_006248178.1|1543047_1543554_-|phage-major-tail-tube-protein
MGLPAKLKNFNFSVDGTSYLGETTEVTQPKLAMQLEDYRAGGMIAPVGVNMGLEKLELEFKIGGHEEDLLKLFGGSISGNAFRFNGAYQHDDDDSVDAVELVCRGRIAEIDEGSSKAGDDTEHSYKASLTYYKKTVNGVDIIEIDTLNQIYIVDGKDRLAEIRKAMGL
>NZ_CP017530.1|WP_006248177.1|1542654_1542969_-|phage-tail-assembly-protein
MKKVTLKQGILRGEKRITEIEVRKPLTKQLRGTNLTSLMQLSVDEWCIVLPRITTPKLDKADFATMSAADLLKLSGKALDLMSEDFDEADEEDSEEQGKGEILA
>NZ_CP017530.1|WP_075270712.1|1542514_1542631_-|GpE-family-phage-tail-protein
MADIATVFHWTPNTFDEMTIVELGQWREKARLRNGVES
>NZ_CP017530.1|WP_006253663.1|1542103_1542451_-|hypothetical-protein
MEIKTVTFSKVITAFIFHIITLFVFTQLNEQAQATFMFFWWFFISLRFILVVGIMCVGIEELKIQEYRQTKAYACFSFISNFALCLQFVYFEHLIAAILFLISYIIYHSQTVTIK
>NZ_CP017530.1|WP_147036310.1|1541664_1542102_-|phage-tail-protein
MLQQFAMMSLGYFVFMRLTIPYQDTSREMNWSHVQNDVVEAMPKSQFTGKAGETMEISAELRPEITGGKMSILALEMMAEQGSAYPLISGSTFMVLGWFVIDRISEQETTFFADGTPRAISFSMSLKRVDDSLLANIIDEVAGFI
>NZ_CP017530.1|WP_006248174.1|1540426_1541665_-|phage-late-control-D-family-protein
MDFLTELTNHNHRTPAVSVTVRPKPSKDNEGEKAKDISTLITHRLIQLTLTDNRGFEADQLDLELDDTDGLLALPSRGAILSVGLGWQNSPLTYKGEYTVDELTHDGPPDKVTIRARSADLRGTLTNRHERSFHRTTIGKIVKQIAEENKLKPMVGKEFENEEVKHIDQTNESSINLLQRLAEQFDAIATVKNGNLIFIKAGNATTASGKLLPLFRITRSSGDSHSFSIAEGDNYKAVKAYWHNTQTGKRGEVTWDENSQVKKVTKPTMRKKTKVKRGADGKPIKGKDGKSIKETVFVKGKGRQVNAVVQSKPIESDSEAIKTLPHTYATAQSAINACKRNFEKLQRGVATFSLTLAEGNAELIPELPVQVSGFKAEIDSNEWIISQVTHSLNKGGGFTTALEMELKPKSED
>NZ_CP017530.1|WP_006248173.1|1539437_1540244_+|DUF3800-domain-containing-protein
MNNQSVWHLFCDESGISGKPFYAFGALWIREDKISLFEKEIQKLREKHYCTDEIKWQGTNSKRFSEFYRELVSFFFQADYLFFNCIVVQQAIVNKAFHNGDYEMAKQKHFNLLICNKIEQSLYKNRINRFVLSVDDLPFKYNKADEAMHIIANNIIRKKTAVANAILALNEVDSRKSSGVQLCDLLLGAILSSYQNDITSERKKELTKWIALHLGWDKLTYDTLQEEKKFNIWYFYDPTKGPRIVRTRETKLKYPLLKKKEQTFQPAR
>NZ_CP017530.1|WP_006248186.1|1548265_1549183_-|baseplate-assembly-protein
MSEIVDLSKLPAPKVLEELDYETLLAERKAKFLSLYPESERAVMAARLALESEPITKLLQENCYLQLLERQRINSAAQATMLAYATGTDLDVIAANFNVERLVVQAEDLTASPPIVEELEPDDDFRQRVQLKIESVSVAGPRKAYTFHALSANGKIADVSVISPQPAYVTVTLLSRDGNGAVASEIINAAKIALNDEEVRPIADRVTVQGASIVEYEINAVLHLYRGPEKEPILKAAKANLEAYINQTKRIGRDVTHSGIHAALHVAGVQNVEILQPRTDLVLTPYQAGYCVNYTLNVEVSDEYS
>NZ_CP017530.1|WP_006248187.1|1549179_1549515_-|hypothetical-protein
MNRETGEQLEDEVEHIKQSIKDILLTAKGSRVMRRTYGSNLYKLTDKPIAASLIMQLSAACVMALQQWEPRIAITRFKVEFAEDNYNKLICTLDFTLKHRKISIKGMRFTL
>NZ_CP017530.1|WP_006248188.1|1549514_1550120_-|phage-baseplate-assembly-protein-V
MSEPNHAEQIRRLDNIIRLGTIAEVDLTTATARVNSGGITTDFLPWLTFRAGTSQTWSAPTVGEQCVVLSVSGEFTTGVILFGIYTQNAPSQSADEHLFRFSDGAEISYNTASGQLTVKNCKVVIVQATESITLDTPTVKATKNVVIGGNLSVKGTTSSQGAISTQGAVTAKGDVSGAGISLGSHHHIEQGDGRPTSGAKP
>NZ_CP017530.1|WP_006250779.1|1550248_1550536_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAKITIKPQALSQFDEIVKSVIEFTGFETSGIRLQSDIFDKIEQIAFMPLSGRAREDGTRETFVRRYRIVYDYDRQADEVIILAIIHSSRLYPRP
>NZ_CP017530.1|WP_006248190.1|1550769_1553682_-|hypothetical-protein
MSNNLKIQVVLSALDKLTAPFKSVVKQTEKLSQSLKVQRDELKALEKTQSKMQSFKKMDDSIKKSNETILKQTKHLDNLKNKISQMKNERIELKVKMDAKKREFQQITKGGSAWSARAAFLDKDFEKMQREYEKLGASISSVSRKRTEENRALKDSRHQQAKQLLYFRSLRRELRASGINIKAFAQSETNLTDKIAKANQLIDQQKAKLEKLNAVKARNEKYWATVEKVKNTSERLHNLGQRSMISGAAISAPVVGLGKGVVGMAQTAGKFEQFNAILEVTEGSAEKAKQSFDWVKQFAVDTPSNLDEAMEAFVKLRAYGLDPTNGLLQTLGDTGAAMGKPVMQAVEAIADALTGENERLKEFGIKGSVVKGTNIIEYAYTDKLGKQQVAKVNKNNRKEIEQTLTRIFNEKYAGAMEKQAKTLVGIWAKIEDYWTNFQMQVMESGAFDWIKNKLQWVLDSLDKMAENGELQKWAEDVGAVIQETVQGLWAFGEKIIEVVKWLASLARENKGLIATFVKWSAILGSSLTVLGAFAVVASFALYPVARLALGIGKFTGASTLLNKALFDSNDKFRLFNKSLYSSGTTAAFVKSKFNQLATLPNVLGSSFNKLGGGIKMLIPQLKTKVFWLNMLKGILGKLWSAIRFIFSPLKLLLGIFSPIGLAITAISVAGVALYRNWEKVRAFFGGFLQGLSKGLAPVLERFKPLGKLFETISNWVKSTFKWLSDLLTPADKTSESLDKASSAGEKFGLALAGAIDLVTSPVQWLVDQFKWISENMPSWDTIGEGVKKAATAIVPTEHAKQITKTAEMSNNMYDPNYTPPQLEQKWIGGLVGNGKGRGFATGGYTGNGGKYEPAGIVHKGEYVMTKEATARLGVANLNRLNYGKVAGLTALASSVAFAQPMPAVKIDSRPPLTASQPSPTVAPVSQNIHITINATGGQDPQAIARLVAMELEKQQRQAQARARSSLRDRG
>NZ_CP017530.1|WP_006248191.1|1553720_1553999_+|hypothetical-protein
MEILFILLGLIGFGALLAIGFTTFAAIFGVVTTVFLSLLSLLANMVGLSIIVILISLYVLLPLNTFILIALIFSAILGFLCWYHSDRQSVNQ
>NZ_CP017530.1|WP_006248192.1|1554049_1554508_-|phage-virion-morphogenesis-protein
MSEPIEQVKTAFDSLLNNISKPRRRLMYQQIGRELARSQRRRIKAQQNPDGSAYEPRKKPKKGVKSKIKSGKMFDKITQPRFMRLRLESEGVSLGYEGGDAVIARIHQQGLIGRVRKDWDLKVKYASRELLGFTDDDLQMIEDYMINILAGS
>NZ_CP017530.1|WP_006248193.1|1554500_1554986_-|phage-tail-protein
MIKPDRLRAVLTQTIDIFQANPEKLILQYDKGKIKSKGSQSHSFEYHYDLELIVVDFPYHPDVLFVPVLNFVRNEQWELLQNPELQDKIEFEIDHNNHESYDIYIRLPLTERVIVKEQDGHLTATHADEPNLADVSPFTRLTEYEVYLKDELIYQWAEPNE
>NZ_CP017530.1|WP_006248194.1|1554982_1555204_-|TraR/DksA-family-transcriptional-regulator
MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIPEKRREMVIGCTRCIECQTIYEHKQKGYRR
>NZ_CP017530.1|WP_006248210.1|1555352_1555808_-|hypothetical-protein
MIVKLCQMTNKHFSPLMIVLVLVGVLANFVQFRQNESLKADLQARTTQNQLIQADNRNLANQLENSQIQLEAYQKQVDDLNQKVLAKMKQAEQRSNEILNELEKHKKWADSAVPPSVGKLLNQRKRAVSHPQIEPDNLSEKAGVPNTGNRD

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Crispr_ID: NZ_CP017530_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017530_3

1991411-1991485

Orphan

Consensus_repeat	Method
TTCTGGTGTCTGCCACCGCTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017530_3

>merge|NZ_CP017530|3|1991411-1991485|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGGTCTTTATACCCTAGATTAGTATCAGGTCTTTCTGGTGCCTGCCACCGCTAGG

>NZ_CP017530|3|3|1991411-1991485|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGG	TCTTTATACCCTAGATTAGTATCAGGTCT
TTCTGGTGCCTGCCACCGCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017530.1\|WP_015484362.1\|1984534_1985182_+\|DUF3560-domain-containing-protein	unknown	unknown	gnl\|CDD\|371890
NZ_CP017530.1\|WP_006248347.1\|1986626_1986887_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248345.1\|1985710_1986061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248346.1\|1986151_1986514_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006253302.1\|1989790_1990054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248313.1\|1993508_1994102_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248308.1\|1996011_1996497_-\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
NZ_CP017530.1\|WP_006248311.1\|1994225_1995089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248305.1\|1997198_1998143_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_CP017530.1\|WP_006248309.1\|1995260_1996010_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP017530.1\|WP_044000240.1\|1986976_1988236_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248349.1\|1988177_1989014_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377859
NZ_CP017530.1\|WP_006250513.1\|1992842_1993046_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP017530.1\|WP_147036304.1\|1990157_1991198_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017530.1\|WP_006251360.1\|1998226_1999120_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP017530.1\|WP_006248350.1\|1989117_1989582_-\|ArdC-family-protein	unknown	unknown	gnl\|CDD\|377992
NZ_CP017530.1\|WP_006248344.1\|1985205_1985613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017530.1\|WP_006248303.1\|1999132_1999594_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP017530.1\|WP_006248307.1\|1996560_1997106_-\|endonuclease-SmrB	unknown	unknown	gnl\|CDD\|235321
NZ_CP017530.1\|WP_006248316.1\|1991601_1992843_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920

Protein	Function_ID	Function_description	E-value
NZ_CP017530.1\|WP_006251360.1\|1998226_1999120_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	0
NZ_CP017530.1\|WP_015484362.1\|1984534_1985182_+\|DUF3560-domain-containing-protein	gnl\|CDD\|371890	pfam12083, DUF3560, Domain of unknown function (DUF3560). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.	1.43868e-45
NZ_CP017530.1\|WP_006248308.1\|1996011_1996497_-\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.45719e-68
NZ_CP017530.1\|WP_006248305.1\|1997198_1998143_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	0
NZ_CP017530.1\|WP_006248307.1\|1996560_1997106_-\|endonuclease-SmrB	gnl\|CDD\|235321	PRK04946, PRK04946, endonuclease SmrB.	3.04874e-103
NZ_CP017530.1\|WP_006248349.1\|1988177_1989014_-\|hypothetical-protein	gnl\|CDD\|377859	pfam07514, TraI_2, Putative helicase. Some members of this family have been annotated as helicases.	2.24148e-119
NZ_CP017530.1\|WP_006250513.1\|1992842_1993046_-\|hypothetical-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	0.00480946
NZ_CP017530.1\|WP_147036304.1\|1990157_1991198_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.21702e-24
NZ_CP017530.1\|WP_006248350.1\|1989117_1989582_-\|ArdC-family-protein	gnl\|CDD\|377992	pfam08401, DUF1738, Domain of unknown function (DUF1738). This region is found in a number of bacterial hypothetical proteins. Some members are annotated as being similar to replication primases, and in fact this region is often found together with the Toprim domain (pfam01751).	1.42315e-52
NZ_CP017530.1\|WP_006248303.1\|1999132_1999594_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	4.22169e-09
NZ_CP017530.1\|WP_006248309.1\|1995260_1996010_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.14593e-11
NZ_CP017530.1\|WP_006248316.1\|1991601_1992843_-\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	8.01844e-62

>NZ_CP017530.1|WP_147036304.1|1990157_1991198_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHTKTKVKHPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017530.1|WP_006253302.1|1989790_1990054_+|hypothetical-protein
MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPVNDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI
>NZ_CP017530.1|WP_006248350.1|1989117_1989582_-|ArdC-family-protein
MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALPRNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPNEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP
>NZ_CP017530.1|WP_006248349.1|1988177_1989014_-|hypothetical-protein
MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLNTELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHGLEVIAFSAKVRQSYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITLKDGSRWFAWNGQPPQPYKFKYIKGRDYHLHPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVTLAIGGDVNKLVQRPVNSLPKQIVLALPLMYLNL
>NZ_CP017530.1|WP_044000240.1|1986976_1988236_+|hypothetical-protein
MFQYAILIIFPLCRTITNELSMEKQIYNRRKTLFGNEETAALYYAAKDIIFEYEIYKPYSIYDDETISSLTLFNCFRYSKNKITHQIQVEYFCFDKKQWIKEVHKYSKGGFKRCVNIPFFRFSKFFLNNAQRTAFSYVTHYIKKHSYAYSKADNIQELLVKFFSRKQPVMQSAFNHQKRIVKWLWAEFWDKNIISMTLRIDGYRNANLWHYLRYQSRIEVLYKIANEHPNLLPLLAYVKPEYWKCSDLFSYQNWVRSRDKQPFILYAKCQDKMLCESKGQWRWLKKQSRIVVDQCFLHVNQWQLLTEIQMPFKIPVCVICFILTNFSMISCELDRSRQRRLLSIFIQYIYHYWKDNGFRQLKIHLSHLRVLFQDIEDYMIHEGYLHGIPQTWQHLVYHLNLINSNTSKVEPAQFASAMN
>NZ_CP017530.1|WP_006248347.1|1986626_1986887_+|hypothetical-protein
MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKKANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY
>NZ_CP017530.1|WP_006248346.1|1986151_1986514_+|hypothetical-protein
MIDTFFDLDDTSCYLGNWEDILKEYDDCLSVEDFWHSAKEFDTVPHFGNLYQERVILKLIARFCIELNIEQDSGLVEFDYYINAIDTHFYINSQRICDIDDWNEMLDKIREEMTPAKLVA
>NZ_CP017530.1|WP_006248345.1|1985710_1986061_+|hypothetical-protein
MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIAVCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANENVCPYLSLAHYEVF
>NZ_CP017530.1|WP_006248344.1|1985205_1985613_+|hypothetical-protein
MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILVSSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSIKGNVASYVKTVSGDVRCRAITGSVETVSGDIYR
>NZ_CP017530.1|WP_015484362.1|1984534_1985182_+|DUF3560-domain-containing-protein
MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHNLVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLSLGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMPESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA
>NZ_CP017530.1|WP_006248316.1|1991601_1992843_-|HipA-domain-containing-protein
MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWLSSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKPKLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLESSDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEYLAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYEASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPAYDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQNVAKEIGIPRQEQEQMKFAFNV
>NZ_CP017530.1|WP_006250513.1|1992842_1993046_-|hypothetical-protein
MFTQTLLAQRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLRK
>NZ_CP017530.1|WP_006248313.1|1993508_1994102_-|hypothetical-protein
MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDLVFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGYQADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQKEGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI
>NZ_CP017530.1|WP_006248311.1|1994225_1995089_-|hypothetical-protein
MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTFLLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLSLFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWVGYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGVLNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIAIVAIICLFYWR
>NZ_CP017530.1|WP_006248309.1|1995260_1996010_+|alpha/beta-fold-hydrolase
MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLKSNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKNLYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREILWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVIELLPIEGADHAFSNPKLMDIAIGKIVEFFAP
>NZ_CP017530.1|WP_006248308.1|1996011_1996497_-|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQGAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVFGAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAKS
>NZ_CP017530.1|WP_006248307.1|1996560_1997106_-|endonuclease-SmrB
MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELRELKEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTREKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWGGDASILILVEQPENPEKMFGR
>NZ_CP017530.1|WP_006248305.1|1997198_1998143_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGHGYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLTNSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAERFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPYVDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVHLIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA
>NZ_CP017530.1|WP_006251360.1|1998226_1999120_-|N-acetylmuramic-acid-6-phosphate-etherase
MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQCLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAGGERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGATTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIGKCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNLDKQKAEDLLSQNQGRLQKALK
>NZ_CP017530.1|WP_006248303.1|1999132_1999594_-|nuclear-transport-factor-2-family-protein
MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILDLNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLSTDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
NZ_CP017530_1	1.2\|1240493\|34\|NZ_CP017530\|CRISPRCasFinder	1240493-1240526	34	NZ_CP017530.1	2632106-2632139	1.0
NZ_CP017530_1	1.3\|1240559\|35\|NZ_CP017530\|CRISPRCasFinder	1240559-1240593	35	NZ_CP017530.1	1306622-1306656	1.0
NZ_CP017530_1	1.4\|1240626\|34\|NZ_CP017530\|CRISPRCasFinder	1240626-1240659	34	NZ_CP017530.1	1618323-1618356	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	NZ_CP017530.1	1544638-1544673	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	NZ_CP017530.1	1545239-1545273	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	NZ_CP017530.1	1544989-1545022	1.0
NZ_CP017530_1	1.12\|1241160\|34\|NZ_CP017530\|CRISPRCasFinder	1241160-1241193	34	NZ_CP017530.1	1314196-1314229	1.0
NZ_CP017530_1	1.15\|1241360\|37\|NZ_CP017530\|CRISPRCasFinder	1241360-1241396	37	NZ_CP017530.1	1594864-1594900	1.0
NZ_CP017530_1	1.20\|1240559\|36\|NZ_CP017530\|PILER-CR,CRT	1240559-1240594	36	NZ_CP017530.1	1306622-1306657	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	NZ_CP017530.1	1544637-1544673	1.0

1. spacer 1.2|1240493|34|NZ_CP017530|CRISPRCasFinder matches to position: 2632106-2632139, mismatch: 0, identity: 1.0

ttcttgaatacctccggagtcagttaagataagg	CRISPR spacer
ttcttgaatacctccggagtcagttaagataagg	Protospacer
**********************************

2. spacer 1.3|1240559|35|NZ_CP017530|CRISPRCasFinder matches to position: 1306622-1306656, mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

3. spacer 1.4|1240626|34|NZ_CP017530|CRISPRCasFinder matches to position: 1618323-1618356, mismatch: 0, identity: 1.0

tccgacacttgcccgtctgcactcgccctagtgc	CRISPR spacer
tccgacacttgcccgtctgcactcgccctagtgc	Protospacer
**********************************

4. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to position: 1544638-1544673, mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

5. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to position: 1545239-1545273, mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

6. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to position: 1544989-1545022, mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

7. spacer 1.12|1241160|34|NZ_CP017530|CRISPRCasFinder matches to position: 1314196-1314229, mismatch: 0, identity: 1.0

tttaccgtttaccgattggattttaatgctagag	CRISPR spacer
tttaccgtttaccgattggattttaatgctagag	Protospacer
**********************************

8. spacer 1.15|1241360|37|NZ_CP017530|CRISPRCasFinder matches to position: 1594864-1594900, mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

9. spacer 1.20|1240559|36|NZ_CP017530|PILER-CR,CRT matches to position: 1306622-1306657, mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

10. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to position: 1544637-1544673, mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017530_1	1.3\|1240559\|35\|NZ_CP017530\|CRISPRCasFinder	1240559-1240593	35	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	11457-11491	0	1.0
NZ_CP017530_1	1.3\|1240559\|35\|NZ_CP017530\|CRISPRCasFinder	1240559-1240593	35	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	11457-11491	0	1.0
NZ_CP017530_1	1.3\|1240559\|35\|NZ_CP017530\|CRISPRCasFinder	1240559-1240593	35	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	11439-11473	0	1.0
NZ_CP017530_1	1.4\|1240626\|34\|NZ_CP017530\|CRISPRCasFinder	1240626-1240659	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	3967-4000	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18775	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18850	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18815	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19011	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19176	0	1.0
NZ_CP017530_1	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18775	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18170	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18170	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18170	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18370	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18599	0	1.0
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18170	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18424	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18499	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18464	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18660	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18825	0	1.0
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18424	0	1.0
NZ_CP017530_1	1.12\|1241160\|34\|NZ_CP017530\|CRISPRCasFinder	1241160-1241193	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19193-19226	0	1.0
NZ_CP017530_1	1.12\|1241160\|34\|NZ_CP017530\|CRISPRCasFinder	1241160-1241193	34	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19018-19051	0	1.0
NZ_CP017530_1	1.15\|1241360\|37\|NZ_CP017530\|CRISPRCasFinder	1241360-1241396	37	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	27263-27299	0	1.0
NZ_CP017530_1	1.15\|1241360\|37\|NZ_CP017530\|CRISPRCasFinder	1241360-1241396	37	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	27371-27407	0	1.0
NZ_CP017530_1	1.20\|1240559\|36\|NZ_CP017530\|PILER-CR,CRT	1240559-1240594	36	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	11457-11492	0	1.0
NZ_CP017530_1	1.20\|1240559\|36\|NZ_CP017530\|PILER-CR,CRT	1240559-1240594	36	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	11457-11492	0	1.0
NZ_CP017530_1	1.20\|1240559\|36\|NZ_CP017530\|PILER-CR,CRT	1240559-1240594	36	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	11439-11474	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	NC_008201	Mannheimia phage phiMHaA1, complete genome	18740-18776	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18815-18851	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18780-18816	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18976-19012	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	19141-19177	0	1.0
NZ_CP017530_1	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18740-18776	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	NC_008201	Mannheimia phage phiMHaA1, complete genome	15663-15721	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	15663-15721	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	15663-15721	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	15863-15921	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	16092-16150	0	1.0
NZ_CP017530_2	2.1\|1547688\|59\|NZ_CP017530\|CRISPRCasFinder	1547688-1547746	59	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	15663-15721	0	1.0
NZ_CP017530_1	1.21\|1240626\|35\|NZ_CP017530\|PILER-CR,CRT	1240626-1240660	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	3966-4000	1	0.971
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	NC_008201	Mannheimia phage phiMHaA1, complete genome	18136-18171	1	0.972
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18136-18171	1	0.972
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18136-18171	1	0.972
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18336-18371	1	0.972
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18565-18600	1	0.972
NZ_CP017530_1	1.23\|1240760\|36\|NZ_CP017530\|PILER-CR,CRT	1240760-1240795	36	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18136-18171	1	0.972
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	NC_008201	Mannheimia phage phiMHaA1, complete genome	18391-18425	1	0.971
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	DQ426905	Bacteriophage phi-MhaA1-BAA410, complete genome	18466-18500	1	0.971
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	KP137432	Mannheimia phage vB_MhM_535AP1, complete genome	18431-18465	1	0.971
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	JN255163	Mannheimia phage vB_MhM_1152AP, complete genome	18627-18661	1	0.971
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	KP137438	Mannheimia phage vB_MhM_2256AP1, complete genome	18792-18826	1	0.971
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	DQ426904	Bacteriophage phi-MhaA1-PHL101, complete genome	18391-18425	1	0.971
NZ_CP017530_1	1.29\|1241160\|35\|NZ_CP017530\|PILER-CR,CRT	1241160-1241194	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	19192-19226	1	0.971
NZ_CP017530_1	1.29\|1241160\|35\|NZ_CP017530\|PILER-CR,CRT	1241160-1241194	35	NC_028743	Mannheimia phage vB_MhS_587AP2, complete genome	19017-19051	1	0.971
NZ_CP017530_1	1.32\|1241360\|38\|NZ_CP017530\|PILER-CR,CRT	1241360-1241397	38	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	27262-27299	1	0.974
NZ_CP017530_1	1.32\|1241360\|38\|NZ_CP017530\|PILER-CR,CRT	1241360-1241397	38	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	27370-27407	1	0.974
NZ_CP017530_3	3.1\|1991434\|29\|NZ_CP017530\|CRISPRCasFinder	1991434-1991462	29	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	22354-22382	5	0.828
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19416	6	0.824
NZ_CP017530_1	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19425	6	0.824
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	NC_047750	Mannheimia phage vB_MhM_1127AP1, complete genome	19383-19417	7	0.8
NZ_CP017530_1	1.24\|1240827\|35\|NZ_CP017530\|PILER-CR,CRT	1240827-1240861	35	NC_028898	Mannheimia phage vB_MhM_587AP1, complete genome	19392-19426	7	0.8
NZ_CP017530_1	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	HM144385	Brochothrix phage NF5, complete genome	32998-33032	10	0.714
NZ_CP017530_1	1.9\|1240961\|34\|NZ_CP017530\|CRISPRCasFinder	1240961-1240994	34	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	710003-710036	11	0.676
NZ_CP017530_1	1.11\|1241093\|35\|NZ_CP017530\|CRISPRCasFinder	1241093-1241127	35	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	368774-368808	11	0.686

1. spacer 1.3|1240559|35|NZ_CP017530|CRISPRCasFinder matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

2. spacer 1.3|1240559|35|NZ_CP017530|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

3. spacer 1.3|1240559|35|NZ_CP017530|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaa	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaa	Protospacer
***********************************

4. spacer 1.4|1240626|34|NZ_CP017530|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

tccgacacttgcccgtctgcactcgccctagtgc	CRISPR spacer
tccgacacttgcccgtctgcactcgccctagtgc	Protospacer
**********************************

5. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

6. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

7. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

8. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

9. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

10. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

11. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

12. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

13. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

14. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

15. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

16. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

17. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

18. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

19. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

20. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

21. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

22. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

23. spacer 1.12|1241160|34|NZ_CP017530|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

tttaccgtttaccgattggattttaatgctagag	CRISPR spacer
tttaccgtttaccgattggattttaatgctagag	Protospacer
**********************************

24. spacer 1.12|1241160|34|NZ_CP017530|CRISPRCasFinder matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

tttaccgtttaccgattggattttaatgctagag	CRISPR spacer
tttaccgtttaccgattggattttaatgctagag	Protospacer
**********************************

25. spacer 1.15|1241360|37|NZ_CP017530|CRISPRCasFinder matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

26. spacer 1.15|1241360|37|NZ_CP017530|CRISPRCasFinder matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

27. spacer 1.20|1240559|36|NZ_CP017530|PILER-CR,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

28. spacer 1.20|1240559|36|NZ_CP017530|PILER-CR,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

29. spacer 1.20|1240559|36|NZ_CP017530|PILER-CR,CRT matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 0, identity: 1.0

ctttttcaagaatcaagattaagagatccaaacaac	CRISPR spacer
ctttttcaagaatcaagattaagagatccaaacaac	Protospacer
************************************

30. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

31. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

32. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

33. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

34. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

35. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

36. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

37. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

38. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

39. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

40. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

41. spacer 2.1|1547688|59|NZ_CP017530|CRISPRCasFinder matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 0, identity: 1.0

ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	CRISPR spacer
ttgttgcactaaataaatccattttgcttttaatgacaataacagggagctttttaggt	Protospacer
***********************************************************

42. spacer 1.21|1240626|35|NZ_CP017530|PILER-CR,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

tccgacacttgcccgtctgcactcgccctagtgcc	CRISPR spacer
tccgacacttgcccgtctgcactcgccctagtgct	Protospacer
**********************************.

43. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

44. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

45. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

46. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

47. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

48. spacer 1.23|1240760|36|NZ_CP017530|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.972

gtggcacagtaacacgagcagatgctgataaacgcc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgct	Protospacer
***********************************.

49. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to NC_008201 (Mannheimia phage phiMHaA1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

50. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to DQ426905 (Bacteriophage phi-MhaA1-BAA410, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

51. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to KP137432 (Mannheimia phage vB_MhM_535AP1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

52. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to JN255163 (Mannheimia phage vB_MhM_1152AP, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

53. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to KP137438 (Mannheimia phage vB_MhM_2256AP1, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

54. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to DQ426904 (Bacteriophage phi-MhaA1-PHL101, complete genome) position: , mismatch: 1, identity: 0.971

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcgg	Protospacer
**********************************

55. spacer 1.29|1241160|35|NZ_CP017530|PILER-CR,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

tttaccgtttaccgattggattttaatgctagagg	CRISPR spacer
tttaccgtttaccgattggattttaatgctagagt	Protospacer
**********************************

56. spacer 1.29|1241160|35|NZ_CP017530|PILER-CR,CRT matches to NC_028743 (Mannheimia phage vB_MhS_587AP2, complete genome) position: , mismatch: 1, identity: 0.971

tttaccgtttaccgattggattttaatgctagagg	CRISPR spacer
tttaccgtttaccgattggattttaatgctagagt	Protospacer
**********************************

57. spacer 1.32|1241360|38|NZ_CP017530|PILER-CR,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.974

aggggcgtgtaccgcaatcaattttaattataaccaag	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaat	Protospacer
*************************************

58. spacer 1.32|1241360|38|NZ_CP017530|PILER-CR,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.974

aggggcgtgtaccgcaatcaattttaattataaccaag	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaat	Protospacer
*************************************

59. spacer 3.1|1991434|29|NZ_CP017530|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

tctttataccctagattagtatcaggtct	CRISPR spacer
gccttataccctagattattatgaggttt	Protospacer
 *.*************** *** ****.*

60. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 6, identity: 0.824

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcg	Protospacer
.  .********.************.********

61. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 6, identity: 0.824

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcg	Protospacer
.  .********.************.********

62. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to NC_047750 (Mannheimia phage vB_MhM_1127AP1, complete genome) position: , mismatch: 7, identity: 0.8

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcgg	Protospacer
.  .********.************.********

63. spacer 1.24|1240827|35|NZ_CP017530|PILER-CR,CRT matches to NC_028898 (Mannheimia phage vB_MhM_587AP1, complete genome) position: , mismatch: 7, identity: 0.8

cagcagccgttgttaccgtggtgcaatgcttgcgc	CRISPR spacer
ttctagccgttgctaccgtggtgcagtgcttgcgg	Protospacer
.  .********.************.********

64. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to HM144385 (Brochothrix phage NF5, complete genome) position: , mismatch: 10, identity: 0.714

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
atcgaccagtaacacgaccagatgttgataattat	Protospacer
.* *  *********** ******.****** ...

65. spacer 1.9|1240961|34|NZ_CP017530|CRISPRCasFinder matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 11, identity: 0.676

tgcgatttttggatttttcgggcgataaatgata	CRISPR spacer
ttttattgttggattttttgggcgataagcttgt	Protospacer
* . *** **********.*********..

66. spacer 1.11|1241093|35|NZ_CP017530|CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 11, identity: 0.686

ttaaatctaaagctaaagctattttattaattaaa	CRISPR spacer
cccgatctaaagctaaaattattttattagattgg	Protospacer
.. .*************..**********. * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43764 : 51272

Mannheimia_phage(81.82%)

tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095578351.1\|43764_43959_-	hypothetical protein	A0A0M3LSS2	Mannheimia_phage	1.9e-06	94.1
WP_006248673.1\|43945_44188_-	hypothetical protein	A0A0M3LSI9	Mannheimia_phage	4.4e-45	100.0
WP_015483985.1\|44188_46249_-\|tail	Variable tail fiber protein H	A0A0M3LRW6	Mannheimia_phage	0.0e+00	99.9
WP_006253441.1\|46245_46803_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	3.9e-105	98.9
WP_006253442.1\|46751_47747_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	1.5e-99	85.6
WP_006251296.1\|47799_47988_-	hypothetical protein	A0A0M3LSQ8	Mannheimia_phage	2.2e-28	100.0
WP_006253443.1\|48017_48386_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.6e-62	100.0
WP_006253444.1\|48385_48760_-	hypothetical protein	A0A0M3LRV6	Mannheimia_phage	1.5e-63	100.0
WP_006253446.1\|49249_50053_-\|transposase	transposase	A0A0M3LPN5	Mannheimia_phage	2.4e-31	35.9
WP_006248972.1\|50097_50376_-	DNA-binding protein	F6MII4	Haemophilus_phage	1.0e-16	57.5
WP_006248970.1\|50552_51272_+	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	4.4e-64	60.0

DBSCAN-SWA_2

633924 : 642079

Acinetobacter_phage(16.67%)

integrase,terminase

attL 633436:633495|attR 638801:638874

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
633436:633495	attL	NA	NA	NA	NA
WP_006250290.1\|633924_634617_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	7.5e-29	58.8
WP_006250289.1\|634613_635039_-	hypothetical protein	NA	NA	NA	NA
WP_006250286.1\|635358_636045_-	hypothetical protein	NA	NA	NA	NA
WP_006250284.1\|636439_636763_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.0e-12	43.5
WP_006253767.1\|636875_637094_-	addiction module killer protein	NA	NA	NA	NA
WP_006250282.1\|637368_638595_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	4.3e-80	39.9
WP_006250280.1\|639401_640361_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	5.1e-44	40.2
638801:638874	attR	NA	NA	NA	NA
WP_015484067.1\|640363_640576_+	hypothetical protein	NA	NA	NA	NA
WP_006253765.1\|640526_640820_+	DUF3144 domain-containing protein	NA	NA	NA	NA
WP_006250278.1\|640837_641140_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	3.5e-07	38.7
WP_006250894.1\|641111_641402_-	BrnT family toxin	NA	NA	NA	NA
WP_006250276.1\|641539_642079_-	HAD-IIIA family hydrolase	A0A222YVZ6	Synechococcus_phage	3.1e-06	34.8

DBSCAN-SWA_3

1075324 : 1082268

Mannheimia_phage(60.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006250049.1\|1075324_1076623_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	2.7e-72	36.4
WP_006250050.1\|1077001_1077295_-	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	2.2e-46	97.9
WP_015484247.1\|1077438_1077828_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006247810.1\|1077799_1078099_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_006247808.1\|1078275_1078962_-	hypothetical protein	NA	NA	NA	NA
WP_006253310.1\|1079072_1079684_-	hypothetical protein	A0A0M3LQG1	Mannheimia_phage	7.7e-54	61.4
WP_006247807.1\|1079732_1080359_-\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	5.8e-89	82.3
WP_006247806.1\|1080580_1081300_-	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_006253312.1\|1081557_1082268_-	tape measure protein	A0A125RN77	Pseudomonas_phage	2.2e-20	40.0

DBSCAN-SWA_4

1085501 : 1095818

Mannheimia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006247798.1\|1085501_1085876_+	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	1.1e-66	98.4
WP_006253314.1\|1085883_1086051_+	DNA cytosine methyltransferase	A0A0M3LNT4	Mannheimia_phage	4.4e-20	76.8
WP_006253316.1\|1086131_1086455_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006247795.1\|1088564_1089158_-	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	8.8e-87	75.5
WP_006247794.1\|1089168_1090215_-	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-23	52.6
WP_006247793.1\|1090211_1090895_-	hypothetical protein	A0A2I7RHG4	Vibrio_phage	4.7e-52	51.3
WP_006247792.1\|1090952_1091141_-	hypothetical protein	A5VW97	Enterobacteria_phage	1.3e-12	62.1
WP_006247791.1\|1091265_1091922_+	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	4.1e-37	42.5
WP_006247790.1\|1091933_1092308_+	hypothetical protein	NA	NA	NA	NA
WP_006247789.1\|1092459_1093197_+	hypothetical protein	NA	NA	NA	NA
WP_006253352.1\|1093232_1093829_-	hypothetical protein	NA	NA	NA	NA
WP_006249220.1\|1094474_1094660_+	hypothetical protein	NA	NA	NA	NA
WP_006249219.1\|1094643_1094841_+	hypothetical protein	NA	NA	NA	NA
WP_006249218.1\|1094843_1095818_+	single-stranded DNA-binding protein	A0A1S5NNJ1	Burkholderia_phage	8.9e-36	44.6

DBSCAN-SWA_5

1214679 : 1265271

Mannheimia_phage(37.5%)

integrase,transposase,tRNA

attL 1239862:1239880|attR 1263675:1263693

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006253505.1\|1214679_1215096_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_006253506.1\|1215142_1216279_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	4.2e-122	57.5
WP_006248098.1\|1217842_1220479_+	DEAD/DEAH box helicase family protein	A0A2K5B2C2	Erysipelothrix_phage	4.3e-141	35.9
WP_006248099.1\|1220610_1223043_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	A0A172JHT4	Bacillus_phage	6.6e-104	32.1
WP_006248100.1\|1223095_1224058_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_006253504.1\|1224154_1225918_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_006248102.1\|1226181_1228470_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_006248103.1\|1228600_1229194_+	hypothetical protein	NA	NA	NA	NA
WP_006253505.1\|1229255_1229672_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_006253506.1\|1229718_1230855_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	4.2e-122	57.5
WP_134983790.1\|1231013_1231475_+	hypothetical protein	NA	NA	NA	NA
WP_006248107.1\|1233457_1234135_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_031192850.1\|1234156_1235938_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_006248109.1\|1235947_1236811_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_006253509.1\|1236810_1237485_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_006248111.1\|1237511_1238432_+	hypothetical protein	NA	NA	NA	NA
WP_134916814.1\|1238432_1238726_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_006248113.1\|1238828_1239842_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
1239862:1239880	attL	NA	NA	NA	NA
WP_006248114.1\|1239908_1240202_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_006248118.1\|1241811_1243287_+	ribonuclease G	NA	NA	NA	NA
WP_006248119.1\|1243440_1244943_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	1.3e-86	38.7
WP_006248812.1\|1245020_1246094_-	homoserine O-acetyltransferase	NA	NA	NA	NA
WP_006248814.1\|1246361_1247045_+	DUF218 domain-containing protein	NA	NA	NA	NA
WP_006248815.1\|1247081_1247921_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_006248816.1\|1247990_1248392_-	H-NS histone family protein	NA	NA	NA	NA
WP_006253512.1\|1248828_1250361_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_006248819.1\|1250586_1251339_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006248820.1\|1251350_1252541_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_006248821.1\|1252542_1253349_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_006253513.1\|1253403_1254810_+	YdgA family protein	NA	NA	NA	NA
WP_020910232.1\|1254876_1255917_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006253274.1\|1256054_1256699_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	1.2e-97	83.6
WP_006250074.1\|1257034_1257454_-	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-27	50.4
WP_006250075.1\|1257492_1257675_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.6e-07	51.7
WP_006250077.1\|1257806_1258304_-	hypothetical protein	A0A0M3LR76	Mannheimia_phage	1.6e-44	97.9
WP_006248823.1\|1258296_1258677_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_006248824.1\|1258751_1259435_-	hypothetical protein	K7PKK1	Enterobacteria_phage	2.8e-20	31.6
WP_006248825.1\|1259565_1259766_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006247808.1\|1260167_1260854_+	hypothetical protein	NA	NA	NA	NA
WP_006247810.1\|1261030_1261330_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_015484247.1\|1261301_1261691_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006247812.1\|1261834_1262128_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_006247813.1\|1262412_1265271_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	8.0e-69	30.6
1263675:1263693	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1270844 : 1366767

113

Mannheimia_phage(88.75%)

tail,tRNA,integrase,transposase,terminase,protease

attL 1262011:1262029|attR 1278780:1278798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1262011:1262029	attL	NA	NA	NA	NA
WP_006247822.1\|1270844_1271885_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LQJ3	Mannheimia_phage	8.5e-202	100.0
WP_006247823.1\|1271906_1272128_-	DUF4224 domain-containing protein	A0A0M3LQA2	Mannheimia_phage	1.3e-35	100.0
WP_006253376.1\|1272177_1272561_-	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	2.0e-68	99.2
WP_006253375.1\|1273078_1273780_-	hypothetical protein	A0A0M3LR56	Mannheimia_phage	4.2e-136	100.0
WP_006247827.1\|1274324_1274540_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	1.6e-30	100.0
WP_006253371.1\|1275001_1275190_+	hypothetical protein	A0A0M3LSW7	Mannheimia_phage	4.5e-29	100.0
WP_006250263.1\|1275193_1275658_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_006250262.1\|1275641_1275845_-	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_006250261.1\|1275841_1276369_-	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.7e-86	100.0
WP_006250260.1\|1276446_1276899_-	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.8e-85	100.0
WP_006250258.1\|1277108_1277744_-	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	3.8e-120	100.0
WP_006250257.1\|1277740_1278535_-	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	5.4e-148	100.0
WP_006253370.1\|1278575_1279526_-	hypothetical protein	A0A0M3LR66	Mannheimia_phage	3.1e-158	100.0
1278780:1278798	attR	NA	NA	NA	NA
WP_006250256.1\|1279538_1279751_-	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	5.8e-33	100.0
WP_006250255.1\|1279884_1280364_-	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	2.4e-79	100.0
WP_006250254.1\|1280360_1280720_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250253.1\|1280723_1281230_-	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	5.7e-95	100.0
WP_006250251.1\|1281798_1282035_-	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	2.1e-36	100.0
WP_006250250.1\|1282416_1282647_-	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	6.5e-38	100.0
WP_006250986.1\|1282938_1283214_+	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006253368.1\|1283222_1283528_+	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.6e-54	100.0
WP_147036291.1\|1283665_1284706_-\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_020824298.1\|1284815_1285313_-	hypothetical protein	A0A0M3LR76	Mannheimia_phage	2.4e-45	100.0
WP_006250079.1\|1285728_1286388_-	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.2e-124	100.0
WP_006250080.1\|1286517_1286724_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	4.8e-32	100.0
WP_006253537.1\|1286744_1287005_+	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	3.3e-38	100.0
WP_006250084.1\|1287313_1288183_+	replication protein	A0A0M3LQL8	Mannheimia_phage	1.8e-165	100.0
WP_006250085.1\|1288179_1289541_+	DNA helicase	A0A0M3LQC0	Mannheimia_phage	7.1e-257	100.0
WP_006250086.1\|1289537_1290074_+	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	2.2e-105	100.0
WP_006250088.1\|1290164_1290380_+	hypothetical protein	A0A0M3LR43	Mannheimia_phage	7.2e-39	100.0
WP_006250089.1\|1290363_1290870_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	7.7e-92	100.0
WP_006250090.1\|1290919_1291132_+	hypothetical protein	A0A0M3LQX8	Mannheimia_phage	8.3e-32	100.0
WP_006250091.1\|1291177_1291372_+	hypothetical protein	A0A0M3LSN2	Mannheimia_phage	4.6e-29	100.0
WP_020824299.1\|1291499_1292069_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	8.7e-100	95.8
WP_006250094.1\|1292058_1292532_+	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	1.6e-83	100.0
WP_006251707.1\|1292851_1293037_+	hypothetical protein	A0A0M3LQD0	Mannheimia_phage	5.2e-30	100.0
WP_006250098.1\|1293375_1293621_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	3.1e-38	100.0
WP_006250099.1\|1293613_1294183_+	lysozyme	A0A0M3LQY4	Mannheimia_phage	1.5e-107	100.0
WP_006250100.1\|1294155_1294506_+	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	1.1e-28	100.0
WP_006250104.1\|1295075_1295600_+\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	1.7e-89	100.0
WP_015484276.1\|1295583_1296804_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LQ32	Mannheimia_phage	8.3e-241	100.0
WP_147036293.1\|1296800_1298177_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	9.6e-262	99.8
WP_015587047.1\|1298130_1299069_+	hypothetical protein	A0A0M3LQH2	Mannheimia_phage	2.6e-170	100.0
WP_015587048.1\|1299055_1300426_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	1.2e-243	100.0
WP_006251230.1\|1300418_1300853_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	8.7e-76	100.0
WP_006251229.1\|1300867_1301857_+	hypothetical protein	A0A0M3LQZ1	Mannheimia_phage	8.6e-188	100.0
WP_147036295.1\|1301868_1302201_+	hypothetical protein	A0A0M3LR32	Mannheimia_phage	4.7e-21	100.0
WP_006251227.1\|1302203_1302581_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	7.3e-63	100.0
WP_006251226.1\|1302580_1302925_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.2e-61	100.0
WP_006251225.1\|1302926_1303295_+	hypothetical protein	A0A0M3LSU9	Mannheimia_phage	4.8e-59	100.0
WP_147036296.1\|1303291_1303672_+	hypothetical protein	A0A0M3LTB0	Mannheimia_phage	2.1e-65	99.2
WP_006251223.1\|1303675_1304158_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.3e-85	100.0
WP_006251222.1\|1304197_1304614_-	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	4.3e-72	100.0
WP_006251221.1\|1304669_1304846_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.3e-26	100.0
WP_006251220.1\|1304941_1305613_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	2.8e-121	100.0
WP_020824316.1\|1305627_1305861_-	hypothetical protein	A0A0M3LQZ8	Mannheimia_phage	7.0e-40	100.0
WP_006251218.1\|1306029_1306488_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	1.2e-78	100.0
WP_006251216.1\|1307032_1309528_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	0.0e+00	100.0
WP_006251215.1\|1309531_1309861_+\|tail	phage tail protein	A0A0M3LSV3	Mannheimia_phage	1.4e-57	100.0
WP_006251214.1\|1309860_1310331_+\|tail	phage minor tail protein L	A0A0M3LTB9	Mannheimia_phage	4.2e-84	100.0
WP_006251213.1\|1310338_1311055_+\|tail	phage minor tail protein L	A0A0M3LPR8	Mannheimia_phage	4.2e-136	100.0
WP_021265346.1\|1311058_1311790_+	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	9.3e-147	99.6
WP_020824196.1\|1312058_1312649_+\|tail	tail assembly protein	A0A0M3LQ39	Mannheimia_phage	1.8e-103	100.0
WP_147036298.1\|1312651_1316377_+\|tail	phage tail protein	A0A0M3LQG1	Mannheimia_phage	0.0e+00	98.2
WP_147036300.1\|1316373_1319367_+	DUF1983 domain-containing protein	A0A0M3LQG1	Mannheimia_phage	0.0e+00	98.8
WP_100067196.1\|1319366_1319810_+	hypothetical protein	A0A0M3LS02	Mannheimia_phage	4.7e-77	99.3
WP_006250517.1\|1319810_1320410_+	hypothetical protein	A0A0M3LR33	Mannheimia_phage	7.5e-110	100.0
WP_015484180.1\|1320524_1320818_+	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	1.2e-47	100.0
WP_006249172.1\|1321364_1321883_-	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.7e-95	100.0
WP_015484183.1\|1321952_1322543_-	hypothetical protein	A0A0M3LPE1	Mannheimia_phage	3.7e-101	100.0
WP_006249380.1\|1322962_1324510_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_006249381.1\|1324506_1325106_+	hypothetical protein	NA	NA	NA	NA
WP_006249382.1\|1325117_1325936_+	PHP domain-containing protein	NA	NA	NA	NA
WP_015484184.1\|1325971_1326244_-	hypothetical protein	NA	NA	NA	NA
WP_015484185.1\|1326240_1326591_-	hypothetical protein	NA	NA	NA	NA
WP_006253556.1\|1326601_1327795_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_080628642.1\|1327808_1328654_-	EfeM/EfeO family lipoprotein	NA	NA	NA	NA
WP_006249376.1\|1328816_1329053_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_006249374.1\|1329291_1331310_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_006249373.1\|1331312_1331723_+	hypothetical protein	NA	NA	NA	NA
WP_006249372.1\|1331943_1333032_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_015484189.1\|1333050_1334016_-	asparaginase	NA	NA	NA	NA
WP_006249370.1\|1334030_1334528_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_006249369.1\|1334701_1335346_+	stringent starvation protein A	NA	NA	NA	NA
WP_006251052.1\|1335345_1335753_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.7e-20	40.7
WP_006249035.1\|1335949_1336909_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006249034.1\|1336988_1337249_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_006249033.1\|1337298_1338189_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006249032.1\|1338318_1340925_+	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	3.1e-91	37.0
WP_006249031.1\|1340974_1341913_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	6.6e-28	28.6
WP_147036302.1\|1341926_1343003_-	AI-2E family transporter	NA	NA	NA	NA
WP_006249029.1\|1343033_1343789_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006249028.1\|1343940_1344150_+	alternative ribosome-rescue factor A	NA	NA	NA	NA
WP_006249027.1\|1344198_1344921_-	dethiobiotin synthase	NA	NA	NA	NA
WP_006249026.1\|1344968_1346156_-	ROK family protein	NA	NA	NA	NA
WP_006249025.1\|1346289_1347408_+	ribonuclease D	NA	NA	NA	NA
WP_006249024.1\|1347464_1347947_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_006249023.1\|1347957_1350618_+	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	1.6e-79	44.0
WP_006249022.1\|1350769_1351609_+	membrane protein	A0A1I9SA48	Rhodococcus_phage	1.3e-35	37.0
WP_006249021.1\|1351697_1352780_+	3-deoxy-7-phosphoheptulonate synthase AroG	A0A0B6VT43	Edwardsiella_phage	6.5e-80	46.7
WP_006249020.1\|1352866_1353559_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_006249019.1\|1353575_1354385_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_006249018.1\|1354483_1355035_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_006249017.1\|1355178_1356876_+	solute:sodium symporter family transporter	NA	NA	NA	NA
WP_006249016.1\|1357022_1358471_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	7.1e-13	27.1
WP_006249015.1\|1358560_1359679_+	anaerobic sulfatase maturase	A0A1B2IB49	Erwinia_phage	1.3e-06	28.2
WP_006249014.1\|1359769_1360351_-	thymidine kinase	A0A2H4YFP5	Citrobacter_phage	5.6e-54	52.1
WP_006249013.1\|1360406_1360625_-	cell division protein ZapB	NA	NA	NA	NA
WP_006249011.1\|1361916_1362240_-	hypothetical protein	NA	NA	NA	NA
WP_006249010.1\|1362455_1363778_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_006253552.1\|1363893_1364079_+	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_006253551.1\|1364207_1365524_+	amino-acid N-acetyltransferase	NA	NA	NA	NA
WP_015586954.1\|1365726_1366767_+\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	1.9e-201	100.0

DBSCAN-SWA_7

1492251 : 1662225

182

Mannheimia_phage(83.33%)

head,plate,tail,holin,tRNA,integrase,transposase,terminase,portal,capsid

attL 1658615:1658640|attR 1667651:1667676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249335.1\|1492251_1494639_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.7e-06	26.4
WP_006249336.1\|1494686_1495673_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.1e-33	37.4
WP_006249338.1\|1495901_1496561_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_006249339.1\|1496620_1497946_-	L-cystine transporter	NA	NA	NA	NA
WP_006249340.1\|1498046_1498799_-	Zn-ribbon-containing protein	NA	NA	NA	NA
WP_147036306.1\|1498798_1499704_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_006249342.1\|1499712_1500276_-	hypothetical protein	NA	NA	NA	NA
WP_006249343.1\|1500275_1501052_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_006249344.1\|1504641_1505037_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_006251543.1\|1505053_1505482_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_006248128.1\|1505780_1506176_+	YhcB family protein	NA	NA	NA	NA
WP_006248129.1\|1506336_1507908_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006248130.1\|1507924_1508236_-	hypothetical protein	NA	NA	NA	NA
WP_006248131.1\|1508357_1509029_-	HAD family phosphatase	NA	NA	NA	NA
WP_006248132.1\|1509149_1510613_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	3.9e-96	40.9
WP_006248133.1\|1510840_1514008_-	MMPL family transporter	S5VTK5	Leptospira_phage	2.9e-51	22.2
WP_006248134.1\|1514021_1515227_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_006248135.1\|1515257_1515830_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_006248136.1\|1516068_1516290_+	DUF1414 domain-containing protein	NA	NA	NA	NA
WP_006253659.1\|1516294_1518028_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_015484232.1\|1518094_1518796_-	MFS transporter	NA	NA	NA	NA
WP_006251537.1\|1518792_1519173_-	hypothetical protein	NA	NA	NA	NA
WP_006248138.1\|1519214_1523675_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_006248139.1\|1523850_1524567_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_006248140.1\|1524615_1525959_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_006248141.1\|1526223_1527111_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	5.6e-61	47.6
WP_006248142.1\|1527246_1527432_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	8.4e-12	66.7
WP_006248143.1\|1527521_1530149_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	4.6e-79	37.1
WP_006248145.1\|1530343_1530769_-	universal stress protein	NA	NA	NA	NA
WP_006251533.1\|1530999_1531773_+	FNR family transcription factor	NA	NA	NA	NA
WP_006248147.1\|1531916_1532708_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006248148.1\|1532760_1533057_-	hypothetical protein	A0A2R2X2B2	Escherichia_phage	2.1e-12	42.3
WP_006248149.1\|1533081_1533360_-	hypothetical protein	NA	NA	NA	NA
WP_006248151.1\|1533519_1535496_+	exoribonuclease II	NA	NA	NA	NA
WP_147036308.1\|1535587_1536388_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	4.0e-10	37.1
WP_006248168.1\|1537070_1537283_-	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	4.9e-32	100.0
WP_006248169.1\|1537406_1538093_+	helix-turn-helix domain-containing protein	A0A0M3LPF9	Mannheimia_phage	7.0e-128	100.0
WP_006248170.1\|1538096_1538615_+	hypothetical protein	Q19UP0	Mannheimia_phage	2.5e-93	100.0
WP_006253662.1\|1538632_1539043_+	hypothetical protein	A0A0M3LP57	Mannheimia_phage	5.5e-72	100.0
WP_006248172.1\|1539142_1539403_+	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	2.2e-34	100.0
WP_006248173.1\|1539437_1540244_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	2.3e-154	100.0
WP_006248174.1\|1540426_1541665_-	phage late control D family protein	Q19UP4	Mannheimia_phage	7.7e-218	100.0
WP_147036310.1\|1541664_1542102_-\|tail	phage tail protein	Q19UP5	Mannheimia_phage	3.7e-74	99.3
WP_006253663.1\|1542103_1542451_-	hypothetical protein	R9QBV4	Mannheimia_phage	4.0e-55	100.0
WP_075270712.1\|1542514_1542631_-\|tail	GpE family phage tail protein	R9QCM4	Mannheimia_phage	5.0e-15	97.4
WP_006248177.1\|1542654_1542969_-\|tail	phage tail assembly protein	Q19UP7	Mannheimia_phage	3.8e-49	100.0
WP_006248178.1\|1543047_1543554_-\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	1.7e-91	100.0
WP_006248179.1\|1543562_1544744_-\|tail	phage tail sheath protein	Q19UP9	Mannheimia_phage	5.2e-224	100.0
WP_006248181.1\|1545121_1545364_-	hypothetical protein	Q19UQ2	Mannheimia_phage	1.7e-44	100.0
WP_147036312.1\|1545364_1547644_-\|tail	phage tail protein	Q19UW4	Mannheimia_virus	0.0e+00	99.9
WP_006248185.1\|1547646_1548279_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	1.0e-101	100.0
WP_006248186.1\|1548265_1549183_-\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	6.2e-164	100.0
WP_006248187.1\|1549179_1549515_-	hypothetical protein	Q19UQ6	Mannheimia_phage	7.7e-56	100.0
WP_006248188.1\|1549514_1550120_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	9.3e-84	100.0
WP_006250779.1\|1550248_1550536_-	type II toxin-antitoxin system RelE/ParE family toxin	Q19UQ8	Mannheimia_phage	1.6e-46	100.0
WP_006248190.1\|1550769_1553682_-	hypothetical protein	Q19UR0	Mannheimia_phage	0.0e+00	100.0
WP_006248191.1\|1553720_1553999_+	hypothetical protein	Q19UR1	Mannheimia_phage	2.6e-33	100.0
WP_006248192.1\|1554049_1554508_-	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	2.0e-78	100.0
WP_006248193.1\|1554500_1554986_-\|tail	phage tail protein	Q19UR3	Mannheimia_phage	1.5e-89	100.0
WP_006248194.1\|1554982_1555204_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.4e-36	100.0
WP_006248210.1\|1555352_1555808_-	hypothetical protein	A0A0M3LQV2	Mannheimia_phage	1.4e-71	100.0
WP_006250773.1\|1555804_1556371_-	lysozyme	Q19UR6	Mannheimia_phage	2.3e-105	100.0
WP_006250772.1\|1556363_1556570_-\|holin	holin	Q19UR7	Mannheimia_phage	7.6e-30	100.0
WP_006250771.1\|1556575_1556788_-\|tail	tail protein	A0A0M3LPY0	Mannheimia_phage	2.0e-33	100.0
WP_006248195.1\|1556784_1557300_-\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	3.3e-90	100.0
WP_006250770.1\|1557411_1558101_-\|terminase	terminase endonuclease subunit	Q19US0	Mannheimia_phage	2.2e-121	100.0
WP_006248197.1\|1558110_1559139_-\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	2.7e-192	100.0
WP_006248198.1\|1559152_1559980_-\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	4.7e-139	100.0
WP_006250768.1\|1560093_1561932_+\|terminase	terminase ATPase subunit family protein	R9QCL2	Mannheimia_phage	0.0e+00	100.0
WP_006248200.1\|1561940_1562981_+\|portal	phage portal protein	Q19UT6	Mannheimia_phage	1.4e-199	100.0
WP_006248201.1\|1563756_1564761_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_006248202.1\|1564985_1565381_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_006248203.1\|1565467_1566550_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_006248204.1\|1566679_1566910_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_006248205.1\|1566918_1567971_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_006248206.1\|1568041_1568935_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_006248207.1\|1568921_1569887_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_006253548.1\|1569889_1571641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006248209.1\|1571633_1572593_-	transcriptional regulator	NA	NA	NA	NA
WP_006249151.1\|1572901_1573483_+	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA
WP_006249152.1\|1573523_1573976_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_006249153.1\|1573979_1574300_-	YbjQ family protein	NA	NA	NA	NA
WP_006249154.1\|1574296_1574896_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	Q66YC8	Euphorbia_ringspot_virus	2.6e-09	27.5
WP_006249155.1\|1574938_1575457_-	N-acetyltransferase	NA	NA	NA	NA
WP_015587056.1\|1575507_1577199_-	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
WP_006249157.1\|1577201_1578020_-	pyridoxal phosphatase	NA	NA	NA	NA
WP_031192872.1\|1578107_1578956_-	OmpA family protein	NA	NA	NA	NA
WP_006249159.1\|1579083_1580805_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.9e-65	31.0
WP_006249160.1\|1580889_1581573_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_006249161.1\|1581582_1583112_-	murein DD-endopeptidase MepM	Q8SBN9	Clostridium_phage	1.7e-17	47.9
WP_095578364.1\|1583336_1584083_+	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L0W2	Tupanvirus	1.4e-17	35.9
WP_006249163.1\|1584247_1587061_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_006249164.1\|1587163_1588393_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_006249165.1\|1588685_1589846_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_006249166.1\|1589854_1590724_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_006249167.1\|1590794_1592240_-	alanine:cation symporter family protein	NA	NA	NA	NA
WP_006249168.1\|1592344_1593331_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_006249169.1\|1593321_1593960_-	DUF1007 family protein	NA	NA	NA	NA
WP_006249171.1\|1595143_1595734_+	hypothetical protein	A0A0M3LTC6	Mannheimia_phage	3.8e-98	100.0
WP_006249172.1\|1595803_1596322_+	hypothetical protein	A0A0M3LSW2	Mannheimia_phage	7.7e-95	100.0
WP_006249173.1\|1596468_1596780_-	hypothetical protein	A0A0M3LSF7	Mannheimia_phage	5.0e-49	100.0
WP_006253545.1\|1597155_1597449_-	hypothetical protein	A0A0M3LR47	Mannheimia_phage	3.4e-47	100.0
WP_147036314.1\|1597571_1600898_-	DUF1983 domain-containing protein	A0A0M3LR06	Mannheimia_phage	0.0e+00	98.4
WP_147036316.1\|1600894_1604629_-\|tail	phage tail protein	A0A0M3LQG1	Mannheimia_phage	0.0e+00	99.7
WP_147036318.1\|1604638_1605268_-\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	9.9e-105	94.7
WP_147036320.1\|1605536_1606268_-\|tail	phage tail protein	A0A0M3LQI5	Mannheimia_phage	1.4e-142	95.9
WP_147036322.1\|1606271_1606988_-\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	4.0e-134	98.7
WP_006253542.1\|1606995_1610022_-	tape measure protein	A0A0M3LS69	Mannheimia_phage	0.0e+00	100.0
WP_006253540.1\|1610085_1610778_-	hypothetical protein	A0A0M3LQM1	Mannheimia_phage	5.5e-48	96.1
WP_006253539.1\|1610864_1611188_-\|tail	phage tail protein	A0A0M3LQW6	Mannheimia_phage	2.5e-59	100.0
WP_006250119.1\|1611189_1611516_-	hypothetical protein	A0A0M3LQT0	Mannheimia_phage	7.5e-56	100.0
WP_006250118.1\|1611530_1611932_-	hypothetical protein	A0A0M3LPJ3	Mannheimia_phage	6.6e-70	100.0
WP_006250117.1\|1612021_1613044_-	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	3.7e-186	100.0
WP_006250116.1\|1613053_1613446_-	hypothetical protein	A0A0M3LQB6	Mannheimia_phage	9.3e-69	100.0
WP_006250115.1\|1613445_1613859_-	HK97 gp10 family phage protein	A0A0M3LPJ5	Mannheimia_phage	1.9e-72	100.0
WP_147036324.1\|1613851_1614223_-	hypothetical protein	A0A0M3LT14	Mannheimia_phage	6.3e-67	99.2
WP_006250113.1\|1614222_1614660_-	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	3.0e-76	100.0
WP_006250112.1\|1614649_1615000_-	hypothetical protein	A0A0M3LS62	Mannheimia_phage	4.6e-59	100.0
WP_006250111.1\|1615059_1616007_-	hypothetical protein	A0A0M3LQL5	Mannheimia_phage	4.7e-175	100.0
WP_006250110.1\|1616072_1616807_-	hypothetical protein	A0A0M3LQV7	Mannheimia_phage	1.7e-124	100.0
WP_006250109.1\|1616924_1617338_-	HD domain-containing protein	A0A0M3LQS1	Mannheimia_phage	2.3e-73	100.0
WP_006250108.1\|1617338_1617557_-	hypothetical protein	A0A0M3LPI7	Mannheimia_phage	2.6e-36	100.0
WP_006250107.1\|1617556_1619218_-	hypothetical protein	A0A0M3LQ07	Mannheimia_phage	4.6e-311	100.0
WP_006250106.1\|1619165_1620569_-	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	3.3e-265	100.0
WP_006250105.1\|1620581_1621814_-\|terminase	PBSX family phage terminase large subunit	A0A0M3LPI9	Mannheimia_phage	8.1e-244	99.8
WP_006250104.1\|1621797_1622322_-\|terminase	terminase small subunit	A0A0M3LPC3	Mannheimia_phage	1.7e-89	100.0
WP_020824300.1\|1622713_1622947_-	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	1.2e-31	87.8
WP_006250100.1\|1622891_1623242_-	DUF2570 domain-containing protein	A0A0M3LSP1	Mannheimia_phage	1.1e-28	100.0
WP_006250099.1\|1623214_1623784_-	lysozyme	A0A0M3LQY4	Mannheimia_phage	1.5e-107	100.0
WP_006250098.1\|1623776_1624022_-	hypothetical protein	A0A0M3LR95	Mannheimia_phage	3.1e-38	100.0
WP_006251707.1\|1624360_1624546_-	hypothetical protein	A0A0M3LQD0	Mannheimia_phage	5.2e-30	100.0
WP_006250094.1\|1624865_1625339_-	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	1.6e-83	100.0
WP_020824299.1\|1625328_1625898_-	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	8.7e-100	95.8
WP_006250091.1\|1626025_1626220_-	hypothetical protein	A0A0M3LSN2	Mannheimia_phage	4.6e-29	100.0
WP_006250090.1\|1626265_1626478_-	hypothetical protein	A0A0M3LQX8	Mannheimia_phage	8.3e-32	100.0
WP_006250089.1\|1626527_1627034_-	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	7.7e-92	100.0
WP_006250088.1\|1627017_1627233_-	hypothetical protein	A0A0M3LR43	Mannheimia_phage	7.2e-39	100.0
WP_006250086.1\|1627323_1627860_-	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	2.2e-105	100.0
WP_006250085.1\|1627856_1629218_-	DNA helicase	A0A0M3LQC0	Mannheimia_phage	7.1e-257	100.0
WP_006250084.1\|1629214_1630084_-	replication protein	A0A0M3LQL8	Mannheimia_phage	1.8e-165	100.0
WP_006253537.1\|1630392_1630653_-	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	3.3e-38	100.0
WP_006250080.1\|1630673_1630880_-	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	4.8e-32	100.0
WP_006250079.1\|1631009_1631669_+	LexA family transcriptional regulator	A0A0M3LSL8	Mannheimia_phage	1.2e-124	100.0
WP_006248823.1\|1631719_1632100_+	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_020824298.1\|1632092_1632590_+	hypothetical protein	A0A0M3LR76	Mannheimia_phage	2.4e-45	100.0
WP_147036291.1\|1632699_1633740_+\|transposase	IS481 family transposase	A0A0M3LQ52	Mannheimia_phage	3.2e-201	99.7
WP_006253368.1\|1633877_1634183_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	6.6e-54	100.0
WP_006250986.1\|1634191_1634467_-	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006250250.1\|1634758_1634989_+	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	6.5e-38	100.0
WP_006250251.1\|1635370_1635607_+	hypothetical protein	A0A0M3LPU3	Mannheimia_phage	2.1e-36	100.0
WP_006250253.1\|1636175_1636682_+	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	5.7e-95	100.0
WP_006250254.1\|1636685_1637045_+	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250255.1\|1637041_1637521_+	hypothetical protein	A0A0M3LSK4	Mannheimia_phage	2.4e-79	100.0
WP_006250256.1\|1637654_1637867_+	hypothetical protein	A0A0M3LQW3	Mannheimia_phage	5.8e-33	100.0
WP_006253370.1\|1637879_1638830_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	3.1e-158	100.0
WP_006250257.1\|1638870_1639665_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	5.4e-148	100.0
WP_006250258.1\|1639661_1640297_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	3.8e-120	100.0
WP_006250260.1\|1640506_1640959_+	hypothetical protein	A0A0M3LPG0	Mannheimia_phage	4.8e-85	100.0
WP_006250261.1\|1641036_1641564_+	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	1.7e-86	100.0
WP_006250262.1\|1641560_1641764_+	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_006250263.1\|1641747_1642212_+	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_020824296.1\|1642711_1643203_+	class I SAM-dependent methyltransferase	A0A0M3LQH0	Mannheimia_phage	5.4e-98	100.0
WP_015484286.1\|1643229_1643487_+	hypothetical protein	A0A0M3LQR4	Mannheimia_phage	1.2e-40	100.0
WP_015484287.1\|1643483_1644473_-\|integrase	site-specific integrase	A0A0M3LQN1	Mannheimia_phage	7.6e-184	100.0
WP_006249379.1\|1644945_1646349_+\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	6.9e-82	37.7
WP_006249378.1\|1646448_1647441_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_006253558.1\|1647494_1648064_-	hypothetical protein	NA	NA	NA	NA
WP_006250738.1\|1648230_1648797_+	elongation factor P	NA	NA	NA	NA
WP_006250739.1\|1648863_1649754_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006250301.1\|1649860_1650436_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_006250302.1\|1650486_1650930_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_006250304.1\|1651090_1652761_+\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	3.6e-255	77.5
WP_006253559.1\|1653027_1653993_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_006250748.1\|1654154_1655495_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_006249037.1\|1655687_1656029_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_006249038.1\|1656095_1657097_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	5.3e-76	46.5
WP_006249039.1\|1657177_1657564_+	RidA family protein	NA	NA	NA	NA
WP_006249040.1\|1657595_1658333_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
1658615:1658640	attL	NA	NA	NA	NA
WP_006250224.1\|1658704_1659919_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	6.2e-55	35.5
WP_006250227.1\|1660388_1660595_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.7e-05	35.0
WP_006250228.1\|1660604_1661264_+	hypothetical protein	NA	NA	NA	NA
WP_006250229.1\|1661274_1662225_+\|capsid	phage capsid protein	E5G6M6	Salmonella_phage	4.0e-49	37.1
1667651:1667676	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1828585 : 1835370

Organic_Lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006248955.1\|1828585_1829638_-	rod shape-determining protein	F2Y2E1	Organic_Lake_phycodnavirus	1.2e-06	22.1
WP_006248954.1\|1829752_1830382_-	amino acid transporter	NA	NA	NA	NA
WP_147036330.1\|1830485_1831133_+	uridine kinase	A0A1V0SAA3	Catovirus	6.1e-33	36.6
WP_006248952.1\|1831147_1831729_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.9e-27	38.4
WP_006248951.1\|1831806_1831962_+	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_006248950.1\|1832090_1832693_-	DedA family protein	NA	NA	NA	NA
WP_006248949.1\|1832694_1833714_-	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	1.9e-33	32.9
WP_006248948.1\|1833849_1834578_-	carboxy-S-adenosyl-L-methionine synthase CmoA	H9YRL8	environmental_Halophage	7.1e-22	29.1
WP_006253612.1\|1834587_1835370_-	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	1.3e-05	36.4

DBSCAN-SWA_9

1935233 : 1991198

Mannheimia_phage(26.67%)

integrase,transposase

attL 1928195:1928210|attR 1950748:1950763

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1928195:1928210	attL	NA	NA	NA	NA
WP_006248370.1\|1935233_1935998_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_147036334.1\|1936151_1938125_-	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_006248367.1\|1938628_1939129_+	hypothetical protein	NA	NA	NA	NA
WP_006248366.1\|1939140_1939398_+	hypothetical protein	NA	NA	NA	NA
WP_006248364.1\|1939557_1939800_-	hypothetical protein	NA	NA	NA	NA
WP_006248363.1\|1939876_1940074_-	hypothetical protein	NA	NA	NA	NA
WP_006248362.1\|1940160_1941135_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	7.8e-40	33.6
WP_006248360.1\|1941910_1942687_-	hypothetical protein	A0A0S2MUV7	Bacillus_phage	2.4e-12	33.5
WP_006248359.1\|1942683_1942890_-	hypothetical protein	NA	NA	NA	NA
WP_006248357.1\|1943055_1943310_-	hypothetical protein	NA	NA	NA	NA
WP_049800970.1\|1943548_1943803_+	hypothetical protein	NA	NA	NA	NA
WP_006248354.1\|1944139_1944691_+	hypothetical protein	A0A0A8WFI2	Clostridium_phage	5.8e-16	39.3
WP_021265545.1\|1944760_1944991_+	hypothetical protein	NA	NA	NA	NA
WP_015484352.1\|1945089_1946130_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.1e-193	95.7
WP_006253296.1\|1946164_1946470_-	TIR domain-containing protein	NA	NA	NA	NA
WP_006253295.1\|1946531_1948514_-	AlwI family type II restriction endonuclease	NA	NA	NA	NA
WP_006248352.1\|1948514_1950683_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0D3MSW0	Lactococcus_phage	1.5e-62	45.2
WP_075270679.1\|1950827_1951037_-	hypothetical protein	NA	NA	NA	NA
1950748:1950763	attR	NA	NA	NA	NA
WP_075270676.1\|1951293_1952361_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_015587043.1\|1952508_1953549_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.8e-197	97.1
WP_006252258.1\|1953702_1954476_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_006248318.1\|1954624_1958821_+	autotransporter domain-containing protein	Q9LA58	Enterobacterial_phage	8.1e-94	43.0
WP_006248319.1\|1958875_1959970_-	molybdenum cofactor guanylyltransferase	NA	NA	NA	NA
WP_006248320.1\|1960056_1960326_+	DUF1040 family protein	NA	NA	NA	NA
WP_006248321.1\|1960389_1961028_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_015484370.1\|1961111_1961888_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_015484369.1\|1961897_1962152_+	luciferase	NA	NA	NA	NA
WP_006252261.1\|1962153_1962447_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_015586954.1\|1962513_1963554_-\|transposase	IS481 family transposase	A0A0M3LR35	Mannheimia_phage	1.9e-201	100.0
WP_015587024.1\|1963552_1964284_+\|transposase	transposase	NA	NA	NA	NA
WP_006248322.1\|1964601_1965156_+	hypothetical protein	NA	NA	NA	NA
WP_006248324.1\|1965423_1965654_-	hypothetical protein	NA	NA	NA	NA
WP_006248326.1\|1965774_1966092_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006248329.1\|1966589_1966847_-	hypothetical protein	NA	NA	NA	NA
WP_006248332.1\|1967281_1968370_-	AAA family ATPase	E7C9Q8	Salmonella_phage	6.1e-110	54.3
WP_006248333.1\|1968434_1968866_-	hypothetical protein	NA	NA	NA	NA
WP_006248334.1\|1968869_1970972_-	integrating conjugative element protein	B4UTQ6	Rhizobium_phage	5.6e-27	46.7
WP_006253298.1\|1970998_1971277_-	hypothetical protein	NA	NA	NA	NA
WP_006248336.1\|1972245_1972677_+	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_032845458.1\|1972694_1973687_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-12	24.6
WP_005719386.1\|1973683_1974673_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-22	33.8
WP_006248338.1\|1975664_1976306_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_006248339.1\|1976323_1977079_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_005719377.1\|1977082_1977730_-	DUF452 family protein	NA	NA	NA	NA
WP_005719374.1\|1977726_1978890_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_006248340.1\|1978886_1980188_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.5e-17	26.7
WP_005719369.1\|1980329_1981217_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_006248341.1\|1981241_1981796_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_005719365.1\|1981855_1982179_-	hypothetical protein	NA	NA	NA	NA
WP_005719361.1\|1982202_1983306_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.9e-63	39.9
WP_015484362.1\|1984534_1985182_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_006248344.1\|1985205_1985613_+	hypothetical protein	NA	NA	NA	NA
WP_006248345.1\|1985710_1986061_+	hypothetical protein	NA	NA	NA	NA
WP_006248346.1\|1986151_1986514_+	hypothetical protein	NA	NA	NA	NA
WP_006248347.1\|1986626_1986887_+	hypothetical protein	NA	NA	NA	NA
WP_044000240.1\|1986976_1988236_+	hypothetical protein	NA	NA	NA	NA
WP_006248349.1\|1988177_1989014_-	hypothetical protein	NA	NA	NA	NA
WP_006248350.1\|1989117_1989582_-	ArdC family protein	NA	NA	NA	NA
WP_006253302.1\|1989790_1990054_+	hypothetical protein	NA	NA	NA	NA
WP_147036304.1\|1990157_1991198_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.3e-194	96.0

DBSCAN-SWA_10

2247335 : 2327883

Mannheimia_phage(15.91%)

head,plate,tail,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006249053.1\|2247335_2248583_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-119	54.4
WP_006249052.1\|2248621_2249374_+	Fic family protein	NA	NA	NA	NA
WP_006249051.1\|2249409_2249739_-	hypothetical protein	NA	NA	NA	NA
WP_006249050.1\|2249742_2249925_-	hypothetical protein	NA	NA	NA	NA
WP_006249049.1\|2250059_2250464_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006249048.1\|2250465_2251467_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249047.1\|2251444_2251606_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_006249046.1\|2251693_2252710_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	7.2e-89	48.9
WP_006249045.1\|2252769_2253930_+	hypothetical protein	NA	NA	NA	NA
WP_006249044.1\|2253978_2254761_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_006249043.1\|2254808_2256695_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_006249042.1\|2256684_2257008_-	putative addiction module antidote protein	NA	NA	NA	NA
WP_006253677.1\|2256991_2257327_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006249330.1\|2257507_2258476_+	iron ABC transporter permease	NA	NA	NA	NA
WP_006249329.1\|2258472_2259210_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.0e-13	27.6
WP_006253678.1\|2259477_2260113_-	hypothetical protein	NA	NA	NA	NA
WP_006251873.1\|2260115_2260850_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_032850044.1\|2260873_2262235_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_006250042.1\|2262333_2264337_-	N-6 DNA methylase	B3GAM1	uncultured_virus	1.5e-16	37.3
WP_006250041.1\|2264444_2268161_-	methionine synthase	A0A140XBC7	Dickeya_phage	1.3e-18	70.0
WP_006250039.1\|2268326_2269610_+	MFS transporter	NA	NA	NA	NA
WP_006250037.1\|2269953_2270622_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.0e-10	28.9
WP_005624547.1\|2270618_2271500_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015484414.1\|2271499_2272315_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_015484415.1\|2272311_2273448_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.8e-19	27.5
WP_006253680.1\|2273475_2273874_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_006253681.1\|2273908_2275612_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_006250036.1\|2275723_2276368_+	adenylate kinase	A0A1B4XWI3	Tenacibaculum_phage	6.5e-11	36.6
WP_006250035.1\|2276429_2277245_-	hypothetical protein	NA	NA	NA	NA
WP_006250034.1\|2277434_2277650_+	YdcH family protein	NA	NA	NA	NA
WP_006250033.1\|2277708_2278866_-	chorismate mutase	NA	NA	NA	NA
WP_006250032.1\|2278987_2281054_-	oligopeptidase A	A0A1V0SD92	Indivirus	1.2e-50	23.8
WP_006250031.1\|2281184_2281925_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	4.2e-22	25.7
WP_006250030.1\|2282173_2283199_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	1.3e-90	54.3
WP_006249872.1\|2283433_2285758_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.4e-159	41.4
WP_006249873.1\|2285847_2286672_-	formate transporter FocA	NA	NA	NA	NA
WP_006253683.1\|2286872_2287367_+	DedA family protein	NA	NA	NA	NA
WP_006253684.1\|2287420_2288290_-\|protease	protease HtpX	NA	NA	NA	NA
WP_006253685.1\|2288377_2289460_-	DNA polymerase IV	NA	NA	NA	NA
WP_006249627.1\|2289582_2290494_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_006249628.1\|2290648_2292415_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.0e-13	25.5
WP_006249629.1\|2292734_2295173_+	S6 family igA-specific metalloendopeptidase	Q9LA58	Enterobacterial_phage	6.0e-49	33.7
WP_006249630.1\|2295209_2295998_-	hypothetical protein	F6MIM2	Haemophilus_phage	2.5e-105	68.3
WP_147036337.1\|2296050_2296233_-	adhesin	NA	NA	NA	NA
WP_006249632.1\|2296401_2297106_-	hypothetical protein	NA	NA	NA	NA
WP_006249634.1\|2297272_2297560_-	hypothetical protein	NA	NA	NA	NA
WP_006249635.1\|2297559_2297835_-	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	5.4e-31	73.5
WP_006249636.1\|2297818_2298421_-	hypothetical protein	A0A0R6PC75	Moraxella_phage	5.0e-05	31.4
WP_006249637.1\|2298421_2300701_-\|tail	tail fiber protein	A0A0R6PHL4	Moraxella_phage	1.4e-18	33.3
WP_006249638.1\|2300710_2301277_-\|tail	tail fiber protein	Q6QI98	Burkholderia_phage	2.8e-42	48.7
WP_006249639.1\|2301269_2302373_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	9.4e-58	37.3
WP_147036339.1\|2302382_2304713_-\|tail	phage tail tape measure protein	S5MBW5	Brevibacillus_phage	2.1e-19	23.8
WP_006249646.1\|2304760_2305063_+	hypothetical protein	NA	NA	NA	NA
WP_080542703.1\|2305041_2305194_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_006249647.1\|2305190_2305505_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_006249648.1\|2305600_2306116_-\|tail	phage major tail tube protein	K4NZR9	Burkholderia_phage	4.6e-07	25.3
WP_006249649.1\|2306126_2307512_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	3.2e-95	43.3
WP_006249650.1\|2307596_2308094_-	hypothetical protein	NA	NA	NA	NA
WP_006249651.1\|2308099_2308534_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	7.7e-16	40.7
WP_006249652.1\|2308533_2308815_-	hypothetical protein	NA	NA	NA	NA
WP_006249653.1\|2308883_2309810_-	hypothetical protein	A4JWK0	Burkholderia_virus	5.4e-75	48.7
WP_006249654.1\|2309840_2310956_-	hypothetical protein	A4JWJ9	Burkholderia_virus	2.3e-64	38.4
WP_006249655.1\|2311190_2311655_-	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	1.6e-14	35.2
WP_006249656.1\|2311718_2312063_+	hypothetical protein	NA	NA	NA	NA
WP_006249658.1\|2312264_2313542_-\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	1.3e-55	48.6
WP_006249659.1\|2313534_2314989_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	4.8e-118	46.8
WP_006249661.1\|2315107_2316664_-	hypothetical protein	A0A2I7S9C5	Vibrio_phage	1.4e-160	60.2
WP_006249662.1\|2316663_2317236_-	DUF3486 family protein	M4MCR3	Vibrio_phage	8.0e-37	45.5
WP_006249663.1\|2317258_2317555_-	hypothetical protein	A0A0C4UR00	Shigella_phage	3.6e-25	58.9
WP_006249664.1\|2317556_2317892_-	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_015484419.1\|2318070_2318418_-	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	3.4e-30	60.9
WP_006249667.1\|2318411_2318681_-	DUF2644 domain-containing protein	NA	NA	NA	NA
WP_006249668.1\|2318683_2319193_-	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.1e-56	66.2
WP_006249669.1\|2319328_2319688_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	1.1e-23	45.1
WP_006249670.1\|2319852_2320386_-	hypothetical protein	F6MIJ5	Haemophilus_phage	5.0e-41	53.7
WP_006249671.1\|2320372_2320918_-	DUF1018 domain-containing protein	A0A2I7S9B8	Vibrio_phage	7.5e-16	33.2
WP_006249672.1\|2321036_2321324_-	hypothetical protein	NA	NA	NA	NA
WP_006249673.1\|2321372_2321762_-	hypothetical protein	NA	NA	NA	NA
WP_006249674.1\|2321778_2321961_-	hypothetical protein	A0A0M3LSN0	Mannheimia_phage	1.1e-19	81.7
WP_051133738.1\|2321970_2322189_-	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.1e-10	85.0
WP_006249676.1\|2322310_2322604_-	hypothetical protein	NA	NA	NA	NA
WP_006249677.1\|2322587_2322824_-	hypothetical protein	NA	NA	NA	NA
WP_006249678.1\|2322835_2323150_-	hypothetical protein	F6MII9	Haemophilus_phage	1.6e-26	61.5
WP_006249679.1\|2323152_2324094_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.3e-63	48.4
WP_006253638.1\|2324125_2324614_+	hypothetical protein	NA	NA	NA	NA
WP_006249681.1\|2324793_2326764_-\|transposase	transposase	C9DGL1	Escherichia_phage	4.3e-146	44.1
WP_006253637.1\|2326773_2326992_-	transcriptional regulator	A0A0M3LPY8	Mannheimia_phage	1.1e-21	71.8
WP_006249683.1\|2327205_2327883_+	helix-turn-helix transcriptional regulator	A0A0M3LP76	Mannheimia_phage	6.2e-36	36.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP017530.1|WP_006250250.1|1634758_1634989_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP017530.1|WP_006250250.1|1634758_1634989_+|hypothetical-protein

1634758_1634989_+

76 aa aa

1492251-1662225

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NZ_CP017530_1	TypeI	1.4\|1240626\|34\|NZ_CP017530\|CRISPRCasFinder	1240626-1240659	34	1618323-1618356
NZ_CP017530_1	TypeI	1.5\|1240692\|36\|NZ_CP017530\|CRISPRCasFinder	1240692-1240727	36	1544673-1544638
NZ_CP017530_1	TypeI	1.6\|1240760\|35\|NZ_CP017530\|CRISPRCasFinder	1240760-1240794	35	1545273-1545239
NZ_CP017530_1	TypeI	1.7\|1240827\|34\|NZ_CP017530\|CRISPRCasFinder	1240827-1240860	34	1545022-1544989
NZ_CP017530_1	TypeI	1.15\|1241360\|37\|NZ_CP017530\|CRISPRCasFinder	1241360-1241396	37	1594864-1594900
NZ_CP017530_1	TypeI	1.22\|1240692\|37\|NZ_CP017530\|PILER-CR,CRT	1240692-1240728	37	1544673-1544637

1. spacer 1.4|1240626|34|NZ_CP017530|CRISPRCasFinder matches to NZ_CP017530 position: 1618323-1618356, mismatch: 0

tccgacacttgcccgtctgcactcgccctagtgc	CRISPR spacer
tccgacacttgcccgtctgcactcgccctagtgc	Protospacer
**********************************

2. spacer 1.5|1240692|36|NZ_CP017530|CRISPRCasFinder matches to NZ_CP017530 position: 1544673-1544638, mismatch: 0

caccgctgctacttcggttatcggagtagtttgcac	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcac	Protospacer
************************************

3. spacer 1.6|1240760|35|NZ_CP017530|CRISPRCasFinder matches to NZ_CP017530 position: 1545273-1545239, mismatch: 0

gtggcacagtaacacgagcagatgctgataaacgc	CRISPR spacer
gtggcacagtaacacgagcagatgctgataaacgc	Protospacer
***********************************

4. spacer 1.7|1240827|34|NZ_CP017530|CRISPRCasFinder matches to NZ_CP017530 position: 1545022-1544989, mismatch: 0

cagcagccgttgttaccgtggtgcaatgcttgcg	CRISPR spacer
cagcagccgttgttaccgtggtgcaatgcttgcg	Protospacer
**********************************

5. spacer 1.15|1241360|37|NZ_CP017530|CRISPRCasFinder matches to NZ_CP017530 position: 1594864-1594900, mismatch: 0

aggggcgtgtaccgcaatcaattttaattataaccaa	CRISPR spacer
aggggcgtgtaccgcaatcaattttaattataaccaa	Protospacer
*************************************

6. spacer 1.22|1240692|37|NZ_CP017530|PILER-CR,CRT matches to NZ_CP017530 position: 1544673-1544637, mismatch: 0

caccgctgctacttcggttatcggagtagtttgcacc	CRISPR spacer
caccgctgctacttcggttatcggagtagtttgcacc	Protospacer
*************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017530

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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