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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP019845 Leptotrichia trevisanii strain JMUB4039 8 crisprs csa3,PD-DExK,DinG,cas13a,DEDDh,RT,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,WYL,cas10,csx10gr5,csm3gr7,csx20,csx1 3 8 8 2

Results visualization

1. NZ_AP019845
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_1 618726-618901 TypeVI-A NA
2 spacers
cas13a

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_2 623331-623424 TypeVI-A NA
1 spacers
cas13a

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_3 1100013-1101343 Unclear NA
20 spacers
cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_4 1110391-1111506 Unclear NA
17 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_5 1297505-1297764 TypeIII I-B
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_6 1533795-1534577 Unclear I-B
10 spacers
csx1,csx20,cas1,cas2,cas4

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_7 2425483-2425587 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP019845_8 2502765-2503100 Orphan I-B
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_AP019845_6 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1534057-1534094 38 NZ_AP019845.1 2308749-2308786 0 1.0
NZ_AP019845_6 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1534057-1534094 38 NZ_AP019845.1 2327185-2327222 0 1.0
NZ_AP019845_8 8.3|2502951|37|NZ_AP019845|CRISPRCasFinder,PILER-CR 2502951-2502987 37 NZ_AP019845.1 184050-184086 0 1.0
NZ_AP019845_8 8.7|2502950|38|NZ_AP019845|CRT 2502950-2502987 38 NZ_AP019845.1 184050-184087 0 1.0

1. spacer 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to position: 2308749-2308786, mismatch: 0, identity: 1.0

attttaagtcctctctcatacccaacagaacttccaaa	CRISPR spacer
attttaagtcctctctcatacccaacagaacttccaaa	Protospacer
**************************************

2. spacer 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to position: 2327185-2327222, mismatch: 0, identity: 1.0

attttaagtcctctctcatacccaacagaacttccaaa	CRISPR spacer
attttaagtcctctctcatacccaacagaacttccaaa	Protospacer
**************************************

3. spacer 8.3|2502951|37|NZ_AP019845|CRISPRCasFinder,PILER-CR matches to position: 184050-184086, mismatch: 0, identity: 1.0

ttggcaagtttgcttttatcattcctgtgataacatc	CRISPR spacer
ttggcaagtttgcttttatcattcctgtgataacatc	Protospacer
*************************************

4. spacer 8.7|2502950|38|NZ_AP019845|CRT matches to position: 184050-184087, mismatch: 0, identity: 1.0

cttggcaagtttgcttttatcattcctgtgataacatc	CRISPR spacer
cttggcaagtttgcttttatcattcctgtgataacatc	Protospacer
**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP019845_6 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1534057-1534094 38 NZ_AP019837 Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence 21122-21159 0 1.0
NZ_AP019845_1 1.1|618766|27|NZ_AP019845|PILER-CR 618766-618792 27 NZ_CP010683 Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence 13192-13218 6 0.778
NZ_AP019845_1 1.1|618766|27|NZ_AP019845|PILER-CR 618766-618792 27 NZ_CP010718 Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence 13192-13218 6 0.778
NZ_AP019845_3 3.20|1101279|36|NZ_AP019845|CRISPRCasFinder,CRT 1101279-1101314 36 MK448590 Streptococcus satellite phage Javan634, complete genome 9466-9501 7 0.806
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MN694674 Marine virus AFVG_250M850, complete genome 1157-1191 7 0.8
NZ_AP019845_3 3.20|1101279|36|NZ_AP019845|CRISPRCasFinder,CRT 1101279-1101314 36 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 619567-619602 8 0.778
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MG592416 Vibrio phage 1.032.O._10N.261.54.F5, partial genome 15237-15271 8 0.771
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MG592492 Vibrio phage 1.118.A._10N.261.49.F6, partial genome 12278-12312 8 0.771
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MN693355 Marine virus AFVG_25M40, complete genome 5648-5682 8 0.771
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MG592493 Vibrio phage 1.118.B._10N.261.49.F6, partial genome 12278-12312 8 0.771
NZ_AP019845_3 3.16|1101020|36|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1101020-1101055 36 AB897757 Klebsiella phage K64-1 DNA, complete genome 166138-166173 9 0.75
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MF360958 Salicola phage SCTP-2, complete genome 158015-158049 9 0.743
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MN692958 Marine virus AFVG_117M8, complete genome 49516-49550 9 0.743
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MN694278 Marine virus AFVG_250M229, complete genome 49504-49538 9 0.743
NZ_AP019845_8 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder 2502803-2502838 36 MN693989 Marine virus AFVG_250M851, complete genome 11207-11242 9 0.75
NZ_AP019845_8 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder 2502803-2502838 36 MN694758 Marine virus AFVG_250M853, complete genome 22604-22639 9 0.75
NZ_AP019845_8 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder 2502803-2502838 36 MN694077 Marine virus AFVG_250M852, complete genome 22610-22645 9 0.75
NZ_AP019845_4 4.1|1110420|36|NZ_AP019845|CRISPRCasFinder,CRT 1110420-1110455 36 CP011076 Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence 1368260-1368295 10 0.722
NZ_AP019845_4 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR 1110811-1110845 35 MT121964 Phage DP SC_6_H4_2017 DNA cytosine methyltransferase and putative helicase genes, complete cds 48230-48264 10 0.714
NZ_AP019845_8 8.5|2502802|37|NZ_AP019845|CRT 2502802-2502838 37 MN693989 Marine virus AFVG_250M851, complete genome 11206-11242 10 0.73
NZ_AP019845_8 8.5|2502802|37|NZ_AP019845|CRT 2502802-2502838 37 MN694758 Marine virus AFVG_250M853, complete genome 22604-22640 10 0.73
NZ_AP019845_8 8.5|2502802|37|NZ_AP019845|CRT 2502802-2502838 37 MN694077 Marine virus AFVG_250M852, complete genome 22610-22646 10 0.73

1. spacer 6.4|1534057|38|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019837 (Leptotrichia wadei strain JMUB3934 plasmid pJMUB3934p2, complete sequence) position: , mismatch: 0, identity: 1.0

attttaagtcctctctcatacccaacagaacttccaaa	CRISPR spacer
attttaagtcctctctcatacccaacagaacttccaaa	Protospacer
**************************************

2. spacer 1.1|618766|27|NZ_AP019845|PILER-CR matches to NZ_CP010683 (Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence) position: , mismatch: 6, identity: 0.778

tgattcaaggaactcataagacgggat	CRISPR spacer
ccattcaaggcattcataagacgggtc	Protospacer
. ******** *.************ .

3. spacer 1.1|618766|27|NZ_AP019845|PILER-CR matches to NZ_CP010718 (Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence) position: , mismatch: 6, identity: 0.778

tgattcaaggaactcataagacgggat	CRISPR spacer
ccattcaaggcattcataagacgggtc	Protospacer
. ******** *.************ .

4. spacer 3.20|1101279|36|NZ_AP019845|CRISPRCasFinder,CRT matches to MK448590 (Streptococcus satellite phage Javan634, complete genome) position: , mismatch: 7, identity: 0.806

caaataagaagaaaaatatttgaaaaataaaaagta	CRISPR spacer
catgagaaaagaaaaatatttgaaacataaaaagaa	Protospacer
** . .*.***************** ******** *

5. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MN694674 (Marine virus AFVG_250M850, complete genome) position: , mismatch: 7, identity: 0.8

tctttaatatattttcttattaattttgaaatact-----	CRISPR spacer
tctttaatatattttattattaattt-----tatttgtga	Protospacer
*************** **********     **.*     

6. spacer 3.20|1101279|36|NZ_AP019845|CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.778

caaataagaagaaaaatatttgaaaaataaaaagta	CRISPR spacer
aagattcgaagaaaaatatttcagaaataaaaaatg	Protospacer
 *.**  ************** *.*********.*.

7. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MG592416 (Vibrio phage 1.032.O._10N.261.54.F5, partial genome) position: , mismatch: 8, identity: 0.771

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
tcttttatatattttcttattattttctatatttc	Protospacer
***** **************** ***. * ** ..

8. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MG592492 (Vibrio phage 1.118.A._10N.261.49.F6, partial genome) position: , mismatch: 8, identity: 0.771

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
tcttttatatattttcttattattttctatatttc	Protospacer
***** **************** ***. * ** ..

9. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MN693355 (Marine virus AFVG_25M40, complete genome) position: , mismatch: 8, identity: 0.771

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
ctttatagttattttcttattattttttaaatact	Protospacer
..**  *  ************* **** *******

10. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MG592493 (Vibrio phage 1.118.B._10N.261.49.F6, partial genome) position: , mismatch: 8, identity: 0.771

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
tcttttatatattttcttattattttctatatttc	Protospacer
***** **************** ***. * ** ..

11. spacer 3.16|1101020|36|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 9, identity: 0.75

ggttaaaaa---acaagaaaaaattgattataataaatt	CRISPR spacer
---tacatgttcacaagaagaaattgattctaataaatc	Protospacer
   ** * .   *******.********* ********.

12. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 9, identity: 0.743

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
tctttaatatattttattaataattattgttatct	Protospacer
*************** *** ***** * .    **

13. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MN692958 (Marine virus AFVG_117M8, complete genome) position: , mismatch: 9, identity: 0.743

tctttaatatattttcttattaatt-------ttgaaatact	CRISPR spacer
tctttaatattttttcttagtaattcattttcttg-------	Protospacer
********** ******** *****       ***       

14. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MN694278 (Marine virus AFVG_250M229, complete genome) position: , mismatch: 9, identity: 0.743

tctttaatatattttcttattaatt-------ttgaaatact	CRISPR spacer
tctttaatattttttcttagtaattcattttcttg-------	Protospacer
********** ******** *****       ***       

15. spacer 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder matches to MN693989 (Marine virus AFVG_250M851, complete genome) position: , mismatch: 9, identity: 0.75

aaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
taggaggaacataaaaaataaaacacaatatatagt	Protospacer
 *.*   ***.****************.***** .*

16. spacer 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 9, identity: 0.75

aaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
taggaggaacataaaaaataaaacacaatatatagt	Protospacer
 *.*   ***.****************.***** .*

17. spacer 8.1|2502803|36|NZ_AP019845|CRISPRCasFinder matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 9, identity: 0.75

aaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
taggaggaacataaaaaataaaacacaatatatagt	Protospacer
 *.*   ***.****************.***** .*

18. spacer 4.1|1110420|36|NZ_AP019845|CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

tatatttataaatatcttgctgtttaaaaatactgg	CRISPR spacer
ataaaatataaatattttgttgtttaaaaatatttt	Protospacer
   *  *********.***.************.*  

19. spacer 4.7|1110811|35|NZ_AP019845|CRISPRCasFinder,CRT,PILER-CR matches to MT121964 (Phage DP SC_6_H4_2017 DNA cytosine methyltransferase and putative helicase genes, complete cds) position: , mismatch: 10, identity: 0.714

tctttaatatattttcttattaattttgaaatact	CRISPR spacer
tttttaatatattttcttatagattttcgtagttc	Protospacer
*.****************** .***** . *  ..

20. spacer 8.5|2502802|37|NZ_AP019845|CRT matches to MN693989 (Marine virus AFVG_250M851, complete genome) position: , mismatch: 10, identity: 0.73

aaaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
ctaggaggaacataaaaaataaaacacaatatatagt	Protospacer
  *.*   ***.****************.***** .*

21. spacer 8.5|2502802|37|NZ_AP019845|CRT matches to MN694758 (Marine virus AFVG_250M853, complete genome) position: , mismatch: 10, identity: 0.73

aaaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
ctaggaggaacataaaaaataaaacacaatatatagt	Protospacer
  *.*   ***.****************.***** .*

22. spacer 8.5|2502802|37|NZ_AP019845|CRT matches to MN694077 (Marine virus AFVG_250M852, complete genome) position: , mismatch: 10, identity: 0.73

aaaagttcaacgtaaaaaataaaacacagtatattat	CRISPR spacer
ctaggaggaacataaaaaataaaacacaatatatagt	Protospacer
  *.*   ***.****************.***** .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 136870 : 171164 28 Clostridioides_phage(25.0%) integrase,head,tail,transposase,tRNA attL 134377:134392|attR 169110:169125
DBSCAN-SWA_2 502755 : 534836 34 Fusobacterium_phage(100.0%) integrase,transposase attL 499626:499642|attR 533572:533588
DBSCAN-SWA_3 617269 : 688889 60 Aeribacillus_phage(25.0%) integrase,transposase attL 623962:623980|attR 691378:691396
DBSCAN-SWA_4 775390 : 892129 97 Streptococcus_phage(30.0%) integrase,tRNA,transposase attL 768330:768348|attR 869314:869332
DBSCAN-SWA_5 1074503 : 1085304 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 1381336 : 1427571 48 Cyanophage(25.0%) protease,transposase,integrase attL 1389751:1389767|attR 1427598:1427614
DBSCAN-SWA_7 1628681 : 1683426 58 Bacillus_phage(50.0%) protease,tRNA,transposase NA
DBSCAN-SWA_8 1836135 : 1899757 50 Staphylococcus_phage(25.0%) transposase NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_AP019845.1|WP_146998694.1|1486923_1487508_-|GNAT-family-N-acetyltransferase 1486923_1487508_- 194 aa aa 89 NA NA No NA
NZ_AP019845.1|WP_146998696.1|1487840_1488419_-|GNAT-family-N-acetyltransferase 1487840_1488419_- 192 aa aa 89 NA NA No NA