CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042476	Antarcticibacterium sp. PAMC 28998 chromosome, complete genome	4 crisprs	csa3,DEDDh,RT,WYL,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042476_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042476_1

346352-346502

Orphan

Consensus_repeat	Method
AAAATCTTGTGAATCGCTTATCCTGAGCCGCAGGCGAAGGATCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042476_1

>merge|NZ_CP042476|1|346352-346502|CRISPRCasFinder
AAAATCTTGTGAATCGCTTATCCTGAGCCGCAGGCGAAGGATCTCTTAAAACAGAATTACAACTAAGCGCAACCATTATTTAATGGTTGCGTTTTTTTTATACAAAAATCTTGTGAATCGTTTATCCTGAGCCGCAGGCGAAGGATCTCTT

>NZ_CP042476|1|1|346352-346502|CRISPRCasFinder
AAAATCTTGTGAATCGCTTATCCTGAGCCGCAGGCGAAGGATCTCTT	AAAACAGAATTACAACTAAGCGCAACCATTATTTAATGGTTGCGTTTTTTTTATACA
AAAATCTTGTGAATCGTTTATCCTGAGCCGCAGGCGAAGGATCTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042476.1\|WP_146830327.1\|350662_352396_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP042476.1\|WP_168194535.1\|355248_355764_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP042476.1\|WP_146830323.1\|347874_348513_-\|esterase	unknown	unknown	gnl\|CDD\|223477
NZ_CP042476.1\|WP_146830309.1\|336777_338322_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830337.1\|355753_357256_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NZ_CP042476.1\|WP_146830307.1\|335459_336629_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP042476.1\|WP_146830317.1\|341440_341902_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP042476.1\|WP_146830333.1\|353764_354271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830303.1\|333483_334077_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP042476.1\|WP_146830325.1\|348558_348978_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|224961
NZ_CP042476.1\|WP_146830329.1\|352477_352819_+\|DUF2853-family-protein	unknown	unknown	gnl\|CDD\|378540
NZ_CP042476.1\|WP_146830311.1\|338336_339707_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240547
NZ_CP042476.1\|WP_146837378.1\|350210_350432_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830313.1\|339778_340480_-\|RNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP042476.1\|WP_146837375.1\|341945_342572_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830315.1\|340557_341376_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP042476.1\|WP_146830321.1\|346574_347852_-\|divalent-metal-cation-transporter	unknown	unknown	gnl\|CDD\|224826
NZ_CP042476.1\|WP_146830331.1\|352931_353771_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225543
NZ_CP042476.1\|WP_146830305.1\|334077_335460_-\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP042476.1\|WP_146830319.1\|344402_346328_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715

Protein	Function_ID	Function_description	E-value
NZ_CP042476.1\|WP_146830307.1\|335459_336629_-\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP042476.1\|WP_146830337.1\|355753_357256_+\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	1.25453e-31
NZ_CP042476.1\|WP_146830325.1\|348558_348978_+\|hotdog-fold-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	1.61206e-29
NZ_CP042476.1\|WP_146830317.1\|341440_341902_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	3.49752e-05
NZ_CP042476.1\|WP_146830319.1\|344402_346328_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP042476.1\|WP_146830303.1\|333483_334077_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.15794e-99
NZ_CP042476.1\|WP_168194535.1\|355248_355764_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	2.0702e-13
NZ_CP042476.1\|WP_146830329.1\|352477_352819_+\|DUF2853-family-protein	gnl\|CDD\|378540	pfam11015, DUF2853, Protein of unknown function (DUF2853). This bacterial family of proteins has no known function.	3.47779e-50
NZ_CP042476.1\|WP_146830311.1\|338336_339707_-\|MATE-family-efflux-transporter	gnl\|CDD\|240547	cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.22945e-170
NZ_CP042476.1\|WP_146830327.1\|350662_352396_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	6.00996e-126
NZ_CP042476.1\|WP_146830313.1\|339778_340480_-\|RNA-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.08284e-57
NZ_CP042476.1\|WP_146830315.1\|340557_341376_-\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	9.18494e-168
NZ_CP042476.1\|WP_146830321.1\|346574_347852_-\|divalent-metal-cation-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	1.09537e-30
NZ_CP042476.1\|WP_146830331.1\|352931_353771_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	9.60183e-69
NZ_CP042476.1\|WP_146830305.1\|334077_335460_-\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP042476.1\|WP_146830323.1\|347874_348513_-\|esterase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	3.92812e-10

>NZ_CP042476.1|WP_146830319.1|344402_346328_+|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVAVMEGNEPTVIPNAEGKRTTPSVIAFVEGGEIKVGDPAKRQAVTNPTKTISSIKRFMGNKYSESSKEAGRVPYKVQKGDNDTARVDIDGRMYTPQELSAMILQKMKKTAEDYLGHEVTEAVITVPAYFNDSQRQATKEAGEIAGLKVRRIINEPTAAALAYGLDKKSTDQKIAVYDLGGGTFDISILELGDGVFEVLSTNGDTHLGGDDFDEVIIDWLADDFKKAEDIDLRKDPMALQRLKEAAEKAKIELSSSSQTEINLPYVTATATGPKHLVQTLTRAKFEQLADELVKRSMAPVKKALDDAGLSKSDIDEVILVGGSTRIPKIQEEVEKFFGKKPSKGVNPDEVVAIGASIQGGVLTGEVKDVLLLDVTPLSLGIETMGGVMTKLIESNTTIPTKKSQVFSTAADNQPSVEIHVLQGERPMATDNKTIGRFHLDGIPPAQRGTPQIEVTFDIDANGIIKVSATDKATNKTQDIRIEASSGLTEEEIKKMKADAEANAESDKKTKEKVEKLNEADAMIFQTENQLKEFGDKLSDEKKKPIEEALEDLKKAYESKEVETIQPALDKINEAWKVASEEMYKAQADGQGQPGGPQGAPGADGQPGGSGDSKQGDDVEDVDFEEVK
>NZ_CP042476.1|WP_146837375.1|341945_342572_-|CPBP-family-intramembrane-metalloprotease
MLGFYFLFFISLGMLKMIFPQFEIDQYQQSDINRLLEEDPWRLVLLAVVFAPIIEEGMFRTLIKPSQNELIFFLCSWLLVIGIAIIPENINWLIKFGFLFLSFILSFIFLKEFIPENWQRRLCTFLNKHYRILWLLTAVIFGMVHIYNYVEGFDLNFVLFLLIVPRIIAGYFFGKIKIENHGLFWPIAMHAMNNGIVFLILLPKILLN
>NZ_CP042476.1|WP_146830317.1|341440_341902_+|SnoaL-like-domain-containing-protein
MKHLQIFILLLLSTSGFAQNQPEDDKVKKVVTDFFEAFHQQDSLALRELAHPNVIMQSVSTNPAGETKVVTVDYGNFLKSIVSIPASTKFEEKLHSFDVTMNGSLATIVTPFSFYLNGNLSHCGVNSFTMVKEAEEWKIVHIIDTRIKEGCKE
>NZ_CP042476.1|WP_146830315.1|340557_341376_-|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSVAKKQYKRVTTKSLVEMKANGEKIAMLTAYDFSMAQIVDGAGIDVILVGDSASNVMAGHETTLPITLDQMIYHAASVIRGIERSLVVVDLPFGSYQSDPKEALRSAIRIMKESGGHAVKLEGGKEIKDSVKRILNAGIPVMGHLGLTPQSIYKFGTYTVRAKEEQEAEKLKSDALLLEKMGCFALVLEKVPAKLAKEVAESLSIPVIGIGAGNGVDGQVLVIHDMLGMNHEFNPRFLRRYADLHAVMTKAFEDYRDDVKSSSFPSDEEQY
>NZ_CP042476.1|WP_146830313.1|339778_340480_-|RNA-pseudouridine-synthase
MNSDKIISTSRNLQVLYEDNHVIIVNKRPGDIVQGDKTGDVPLSEVVKEYIKEKYNKPGNVYLGVVHRLDRPTSGIVLFAKTSKALPRLNKLFKEKDANKTYWAIVKNAPPKQQDSLVHYLKRNTKQNKSVAHTREVPESKRAILHYIILKKLDNYYLLEIDLETGRHHQIRSQLSAIGCPIKGDLKYGFDRSNKDASIHLHARKLSFVHPVSKEEIEVLAPPPVDPVWDACK
>NZ_CP042476.1|WP_146830311.1|338336_339707_-|MATE-family-efflux-transporter
MKPTGPNIYTEGKIFTSLVSLALPIIFANILQTTYQLIDTFWLGRLGADAVAAVSLSFPVLFLVLSIGSGLTLAGTVMVAQYKGADNQKMVNYSSSQSVFLILLISIVLAVISYFSAGPLMTIIGAGPEIYDDSVAYFKVSSFGFVFLFLFFIFQSLMRGIGNVMLPVYIILFTVFLNLVLDPLFIYGYGPIPGYGVAGAAVASIITQGLSAAIGLYILFRGKNGIKIKLSSMYFDMINLKRTFNLGFPASVEQSTRALGMTMMVILVTSFGSEIVAAYGIGARILSFIVIPALGLGIATTSLIGQNIGARKIKRAEQVANLSNKIAFFGLTGLGIILFIFAETLTAFFIPNDPEVIRDGALFIKIMAPSFGLLGVQQVMNGTFNGAGFTKASMLISILSLWVVRFPLAYVLSYNTPLSYEGIWWAFPISNLIAAIVAFIYFKMGYWKMRVFKYRN
>NZ_CP042476.1|WP_146830309.1|336777_338322_+|hypothetical-protein
MTNDLTENLFSLIKSLTPSEKRQFSLYVGRIGVNAESKFLNLFKVISAQKVYNEKLILEKTNISKQQLSNVKGHLYKQLLISLKLNPVHQSIPINIREQLDFASILYRKGLYKQSLKILDKVKATALHYEEKNIAYEILEWEKIIESQYITRSIHNRAESLIKQTEELSDLNLIAGKLSNLSLQLYSIFLKMGYARTEEEARSIKEYFRDSLPEYDFSKLGFREKLWLYKASLWYSFLIQDFLSCFRYSSKWIALFDEYPHMVSVHPVSYLRGNHYLLEALFYLNHTRLFETTLQNFENKLKDPKIPDDDNIAALAFLYVYSNKLNLRFMKGDFSNGEPLVEKIQKKIKKFDGRIDHHHIMVFYYKIASLYFGDENYLKCIAFLKKIINDKSLEMREDLMCFARILNLVAHYEVGKDYHLDSLIRSTYKFLIKMNDLHEVQKEMIKFLRNLPEVSPLEIKEEFKKLHSKLKQYEDHPYEKRAFLYLDIISWLESNIENRPVAEIVAEKARLVTR
>NZ_CP042476.1|WP_146830307.1|335459_336629_-|2-isopropylmalate-synthase
MSNGKIEIFDTTLRDGEQVPGCKLNTTQKLKIADKLDSLGVDVIEAGFPVSSPGDFKSVKEISRLVKNASVCALTRAVKKDIEVAAEALKHARRPRIHTGIGTSDSHIKYKFNSTREEIIVRAREAVSYAKNFVDDVEFYAEDAGRTDNEYLARVCTAAVEAGATVLNIPDTTGYCLPEEYGKKIKYLKDHVKDIEKVTISCHCHNDLGLATANAIAGIMNGARQIECTINGIGERAGNTALEEVVMILRQHPTLNLHTNIQPKLLYALSNLVSREMGMFVQPNKAIVGANAFAHSSGIHQDGVIKNRETYEIIDPADVGVTESAIVLTARSGRAALAYKAKKMGYELTKLQLDIVYAEFLSYADHRKEVADTDLHEIMSISFKNRAIA
>NZ_CP042476.1|WP_146830305.1|334077_335460_-|3-isopropylmalate-dehydratase-large-subunit
MKKTLFDKIWDSHVVESIPNGPDVLYIDKHLIHEVTSPQAFNELRERDIPVFRPEKTVATADHNTPTLNQHLPIKDLLSRKQLKELTQNCEENNINLYGLGHPFNGIVHVMAPELGITQPGMTIVCGDSHTSTHGAFGTIAFGIGTSQVAQVFASQCVLVEKPKKLRVNVNGKLKPGVLPKDVILYIISQLGTNSGTGYFCEYAGNVFEEMSMEGRMTVCNMSIEMGARGGLIAPDETTFEYMKGREFAPQGEQFEMLKEKWKALKTDAEAEFDKEFSLDAEDIEPMITYGTNPGMGIKLTGNIPFNGGKSAAKALEYMGFIPGESLLEKQVNWIFIGSCTNSRIEDFRTAAAYIKGKQKAANVNALIVPGSRKVAEQIKAEGLQQIFEDAGFTLRQPGCSACLAMNDDKIPAGEYCVSTSNRNFEGRQGQGARTILASPLTAAATAIAGKITDFTKNLN
>NZ_CP042476.1|WP_146830303.1|333483_334077_-|3-isopropylmalate-dehydratase-small-subunit
MEKFIKLQDTAVPLEIENIDTDQIIPARFLKATDKAGFGENLFRDWRFDKEGNLNPGFSLNDPKFKGSILVAGDNFGCGSSREHAAWALKAYGFKVVVSSYFADIFKANALNNGILPVQVSPGFLGKLFNHILEEASTEILIDLENQNISLTATQEAERFEIDPYKKICMINGLDDIDFLLSKLDAIKEYEQKQLAL
>NZ_CP042476.1|WP_146830321.1|346574_347852_-|divalent-metal-cation-transporter
MNEENYPAKNKISLLKSIGPGFLLAGAAVGVSHLVQATRAGADYGLILFWVLLLACISKYPFLEFGPRFTAGTGKHLISGYRTLGKFPYWTYVILTIGSMFIIQAAVTIVTAGLAERLFNFGLSPFFWSVIILISCIAILLIGKYPGLDRSMKIIISFLTLATLGAVLMAIGAGAAEQAIHTEAPSLWTTASIGFIIAFMGWMPIPLDAAVWHSLWTKERALQTKQKLSIKGAFTDFNVGYLSAAFIGLLFFFLGVLVMFGSGTSFSSNSVEFSSQLINLYGKTLGDWSKPLIAVAAFITMFSTVLTVTDAYPRVISELKNYKRDNAQEKEHKWKIYRIAIFIIPVLSLSILFFLSGSFTILVDFAAGLSFLSAPFLAWFNYKLVTGKQMPEKHRPGKNYRLFSLICFAFLVLFNLVYLYYNFFL
>NZ_CP042476.1|WP_146830323.1|347874_348513_-|esterase
MNPAEKQVSYQITYTYSTLNSFTSNTKNVWVVFHGIGYLSRYFLKYFKQLNPEENYIIAPQAPSKYYLNNEYRHVGASWLTKENTEAETENILTYLDAVYKTENLQNAPNLILFGYSQGVSIASRWVARNKTGCNQLILHSGGLPKELQPEDFEFLDDTRVTLIYGDADEYLNKEKLEKETQRARELFGDKLEIISFEGGHEVNTDLIGKFN
>NZ_CP042476.1|WP_146830325.1|348558_348978_+|hotdog-fold-thioesterase
MEKQEILAKCNEMSRNTLMQTLNIEFIDIGEDFVTAKMPVTATVHQPDGVLHGGASVALAESVGSVASHIFIDAAEYYIRGIEISANHIKSISEGDVYAKATFIHKGRTTQLWNIRITDVDDNLISVVKLTTIALPKKN
>NZ_CP042476.1|WP_146837378.1|350210_350432_-|hypothetical-protein
MRTSEWFWTLFLTAIPLVGIILLLIWGFGSSSNLNKSNWAKATLLWILVITSFYVVLLIIFGLSFLSMGGNDY
>NZ_CP042476.1|WP_146830327.1|350662_352396_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MKYSKIPVAQSIVALCVAKNIKHVVISPGSRNAPLTIGFTHHPEIIPYSIVDERCAAFFALGIAQQLQEPVAVVCTSGSALLNYYPAVAEAFYSDIPLVVISADRPIERIDIGDGQTIRQKNVFENHILYSANLHSEIVLESRLADKKLQQKQFESQKHNEREINLALNKAIEDKGPVHINVPFYEPLYDSIEEIEVNPLQIFPEVHDRIYSYQELMPYAQLWNNAKRKMVIVGVAGPNTIEQQFLDSLAMDESVLVLTETTSNLNHPGFFTRIDTLIGPIERCEDAQEQFKALQPDILLTFGGMIISKKVKSFLRNYQPKQHWHVDPKKAYNTFFCLNKHFESRANSFLEKFFSLVETGKGDYAAYWKEIKEKRQAQHDIYMKEIPYSDLKAMQHIVGRVPKDWNIQLGNSATVRYAQLFNWDLSQKLFCNRGTSGIDGSVSTAVGAAVVNVDPTLLICGDLSFFYDSNGLWNNYIPKHFRIIILNNEGGGIFRILPGHKNTQNFDTFFETVHSMNARALAEMYGFEYASAKSPEDINQDLESFFTPSEKPRILEVFTPRKINDEVLLEYFSFMKS
>NZ_CP042476.1|WP_146830329.1|352477_352819_+|DUF2853-family-protein
MSKTDEKVEKYAQDFKDKIGGSLDLELLKKVTVACGPRIFNNDAETVSGSSESELATVRKNFLIKKLGLKDDDKLDAGINSVIEKYGKSNRNKYRAVVYYLLTKHFKKENVFN
>NZ_CP042476.1|WP_146830331.1|352931_353771_+|GntR-family-transcriptional-regulator
MLTIGEYHLMKIDRDTEPGLFLKNESGDEVLLPNKYKPSSFDIGDEIRVFVYLDHQERPVATTLTPYVKLDEFAYLKCVELSDIGAFLDWGLEKHLFVPYREMASKMRKDSWYLVFCYLDEESGRLVASSKTNAFLDNRELTVEPFEEVDLIVANPTDLGMNVIVNEIHQGLIFKDDIFQDLQPGDKLKGWVKKTRPDGKIDITLQRPGYRSIEPNAQDILNELGLKDGFLPLTDKSSPDEVQKTLQMSKKSFKKAVGTLFKQRLIEIKEDGIYLKKDQ
>NZ_CP042476.1|WP_146830333.1|353764_354271_-|hypothetical-protein
MRKIGLLFLLGCFSYFGFAQEIPVLQEVPEGLLTKRIEIRPSLSNLASEIPNTGRFKIRSVNFDTQNVPREINIAAVMEREEQLKARRIELAPPVNVPRPNTTSVSDNETFSIAPRFYNQSFSPEAYGRGTRNSVYRNAADGTGASYLQTYSPFLRGYGNGYYRGYYY
>NZ_CP042476.1|WP_168194535.1|355248_355764_+|PH-domain-containing-protein
MDSFKNDVIDLESLPRFEEVEFQSISGNYLLKSNFQTGIFFLFILSGWIGLYYYEIGTSYLPVALAGIVILFGFKFWNNLMMQKKYGYALRERDILYRRGYIINSITIVPLNRIQHVAVSRDALDKILNISSLRIFTAGGSGSDISIPGLNPDLAASLKEALASRLTPNED
>NZ_CP042476.1|WP_146830337.1|355753_357256_+|PH-domain-containing-protein
MKTEAFSTPQRQSVAGIALIFLTTLFKFLRSFWVLGVYLVLKTPSGPVLFYILLGLAVTAILLIIYSVLYYRNFLFHVDYKNEEFVLQKGVISTENIAISFDRIQQVYFKRSLLERIINVYSVIIDTAGSNNEEVKISAISKQDADALAAILTRVKNENIEGPLEGEEEVTADETWTYKLDVLALLKIGVSSNYARGLGLVLAFFMTLYNELNTFFKDYKEELGEYYETVPNVLDSVGIFSVLLILLLFVSIAITMLEVFIKYFGLKLTQTRDNMELEMGLKTNTKVSLQPRRVQLIEIVTNPVKKWLNLYEARIALASSENSLQKKKIKIPGLGAGEVIKVQKFLSGDLERSFMKIFRPHRIMLLRRIIIVLLPLLVSYLLFYWKEYIDFSIWLVLALGYLLLGITYQILKYRSLELEFSDEFLLKRQGVWNKREESVEIFKMQGLTVKQPVWYRKRNLVNVEFHTAGGDISFRAVKKTVTTYLNYILYKVESGNKRWM

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Crispr_ID: NZ_CP042476_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042476_2

583914-584017

Orphan

Consensus_repeat	Method
AGATCCTTAAACAAGTTCAGGATGACG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP042476_2

>merge|NZ_CP042476|2|583914-584017|CRISPRCasFinder
AGATCCTTAAACAAGTTCAGGATGACGTAAAGGAGGTAAAAAGAGGTGATTCCACTTTCTGTATTTACTATCCAATCAGATCCTGAAACAAGTTCAGGATGACG

>NZ_CP042476|2|2|583914-584017|CRISPRCasFinder
AGATCCTTAAACAAGTTCAGGATGACG	TAAAGGAGGTAAAAAGAGGTGATTCCACTTTCTGTATTTACTATCCAATC
AGATCCTGAAACAAGTTCAGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042476.1\|WP_146830661.1\|580969_581350_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830676.1\|590754_592203_+\|GIY-YIG-nuclease-family-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236123
NZ_CP042476.1\|WP_168194547.1\|587644_587809_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830684.1\|595114_595993_-\|arsenite-methyltransferase	unknown	unknown	gnl\|CDD\|237007
NZ_CP042476.1\|WP_146830672.1\|588114_589689_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP042476.1\|WP_146830674.1\|589895_590420_-\|SgcJ/EcaC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226769
NZ_CP042476.1\|WP_146830651.1\|573998_574424_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270230
NZ_CP042476.1\|WP_146830656.1\|576725_577070_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP042476.1\|WP_146830670.1\|585364_587563_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224684
NZ_CP042476.1\|WP_146830663.1\|581608_583078_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830678.1\|592402_593266_-\|DUF2179-domain-containing-protein	unknown	unknown	gnl\|CDD\|376838
NZ_CP042476.1\|WP_146830680.1\|593397_594447_-\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NZ_CP042476.1\|WP_168194546.1\|580323_580926_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP042476.1\|WP_146830682.1\|594446_595082_-\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319973
NZ_CP042476.1\|WP_146837412.1\|577142_579059_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP042476.1\|WP_146830649.1\|573048_573999_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP042476.1\|WP_168194545.1\|576519_576675_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146830666.1\|583089_583785_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP042476.1\|WP_146830654.1\|575011_576157_-\|saccharopine-dehydrogenase	unknown	unknown	gnl\|CDD\|224662
NZ_CP042476.1\|WP_146830668.1\|584153_584996_-\|metalloprotease	unknown	unknown	gnl\|CDD\|225203

Protein	Function_ID	Function_description	E-value
NZ_CP042476.1\|WP_146830684.1\|595114_595993_-\|arsenite-methyltransferase	gnl\|CDD\|237007	PRK11873, arsM, arsenite methyltransferase.	7.60466e-134
NZ_CP042476.1\|WP_146830676.1\|590754_592203_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|236123	PRK07883, PRK07883, DEDD exonuclease domain-containing protein.	2.03451e-68
NZ_CP042476.1\|WP_146830674.1\|589895_590420_-\|SgcJ/EcaC-family-oxidoreductase	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	5.84583e-12
NZ_CP042476.1\|WP_146830672.1\|588114_589689_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.22748e-67
NZ_CP042476.1\|WP_146830656.1\|576725_577070_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.50388e-26
NZ_CP042476.1\|WP_146830670.1\|585364_587563_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NZ_CP042476.1\|WP_146830666.1\|583089_583785_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.78759e-56
NZ_CP042476.1\|WP_146830678.1\|592402_593266_-\|DUF2179-domain-containing-protein	gnl\|CDD\|376838	pfam02588, YitT_membrane, Uncharacterized 5xTM membrane BCR, YitT family COG1284. This is probably a bacterial ABC transporter permease (personal obs:Yeats C).	5.44602e-44
NZ_CP042476.1\|WP_146830680.1\|593397_594447_-\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	1.20842e-122
NZ_CP042476.1\|WP_168194546.1\|580323_580926_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.71404e-33
NZ_CP042476.1\|WP_146830682.1\|594446_595082_-\|protein-tyrosine-phosphatase	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	3.6089e-17
NZ_CP042476.1\|WP_146837412.1\|577142_579059_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.80439e-51
NZ_CP042476.1\|WP_146830649.1\|573048_573999_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.72294e-39
NZ_CP042476.1\|WP_146830651.1\|573998_574424_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270230	cd01009, PBP2_YfhD_N, The solute binding domain of YfhD proteins, a member of the type 2 periplasmic binding fold protein superfamily. This subfamily includes the solute binding domain YfhD_N. These domains are found in the YfhD proteins that are predicted to function as lytic transglycosylases that cleave the glycosidic bond between N-acetylmuramic acid and N-acetylglucosamin in peptidoglycan, while the YfhD_N domain might act as an auxiliary or regulatory subunit. In addition to periplasmic solute binding domain, they have an SLT domain, typically found in soluble lytic transglycosylases, and a C-terminal low complexity domain. The YfhD proteins might have been recruited to create localized cell wall openings required for transport of large substrates such as DNA. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.98384e-08
NZ_CP042476.1\|WP_146830654.1\|575011_576157_-\|saccharopine-dehydrogenase	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	4.68709e-32
NZ_CP042476.1\|WP_146830668.1\|584153_584996_-\|metalloprotease	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	5.44788e-122

>NZ_CP042476.1|WP_146830666.1|583089_583785_+|ATP-binding-cassette-domain-containing-protein
MIQVENLTKTYGGTTVLNIAHLEIPKGESFGLVGNNGAGKTTFFSLLLDLISPDTGKITSNNIHISSDEGWKPFTTAFIDETFLIGYLTPEEYFYFIGELRGRKKAEVDEFLLRFTEFFNGEVLNGKKYLRDLSKGNSKKVGIVAALIGEPQVVILDEPFANLDPTTQFRLKKIIREIAATKETTILVSSHDLQHTVEISNRIVVLEKGEIVKDIQTTHETMQELETFFAV
>NZ_CP042476.1|WP_146830663.1|581608_583078_+|hypothetical-protein
MLKKFFSLEWKSFLRSASFRANMFIKIIMVLAALYFILIFTGLGIGLFYILKKQEMEPLETVNRFIIFYLLLDLVIRYFLQKMPVMNIRPFLVQNISRKSIVGYSLGKTMVSIFNILHLFFLLPFTIVLIVEGYDPLGATAWFIGILSVVYLNNFLNILSNNRSFVLYSVALILVLLALFTYYGLIDLTQYTQPLFGALYTTPWVVIVPVLLLVIVSWITFRFFLKNLYLDAGLKVKEKAAQTEHYTWLNRYGVLGTFIKNDIKLIKRNKRSRTTIIMSVLFIFYGLLFFTGGIEAYEGPVWRIFAGIFVTGGFIFTFGQFVPSWDSSYYPLMMSQNIQYREYLNSKWWLMVITTIITTMIAGFYLYFGWEVYQAILVGAVYNIGVNAHLVLLGGAYIRTPIDLTQNKNVMGNKQAFNSKTLLLTLPKLILPLGLYALGHYLFEPIAGYLMVAGAGIIGFAFKNKVFVLIERIYKTEKYKTIAAYSQKA
>NZ_CP042476.1|WP_146830661.1|580969_581350_-|hypothetical-protein
MEQLLELLGKRKTLKILAHHNFSAGIKDLIREGYVEIKDDDFILTVKGENARKEGIPPETEPEDLTQLKRNNLNKSITELPPPKFKRGSTSIFILILAFFIFLFKYLPLEKINWSNYKLKWWKNRD
>NZ_CP042476.1|WP_168194546.1|580323_580926_+|Crp/Fnr-family-transcriptional-regulator
MNEHSSQAIFQTGEVLIRQDSPTNSIVFIKSGLVKIHTQGPNRERIMNISKAPSYLCLHSTFGDKINHFSATALEPTAVCFIESNVFTSLIQENGNFAYEVIQSMGRGELQNFHYLIDIAQKQNMGRVAHVLLYFAKQIYISNTFNLPLSRQELADLAGITRESISRILHKFHNEELIHIEGRKISLKNDRALKEISDKG
>NZ_CP042476.1|WP_146837412.1|577142_579059_-|PAS-domain-S-box-protein
MIQCPDSTFKNLLLFSKPLFNENQNLTGAHSILIDISGQVVNEIKQTTLSAIVESSDDAIISKDLRGKITSWNKGAEMIFGFTEKETLGKSITMLIPMERLKEEKQAMLSAIVNSSEDAIISKDLTGKITSWNKGAEIIFGFTEKETLGKSITILIPKDRLKEEKHIIDNIKKGKKVDHFETVRKTKDGRLIPLSITVSPVKDFLGNIVGASKVARDISARIQAEAEINQHNSNLEILNSIGKSISENLDVQGVLQRVTDATTKLTGASYGAFFYNDYQENGESFKLYTLSGAARESFEKLGMPRHTALFAPTFADKEVVRIDDILLDPRYGKNFPQAGMPAAHLPVRSYLAVPVVSKTGEVIGGLLFGHPEPGIFTASHEDIVINIAAQAAVSLDNSKLFEQVKNLSDRKDEFIALASHELKTPLTTIKGYLQVLAKKEKDSLSELFISKSLNQVNKLNNLVDDLLNMSRIEAGKMEFNLEVFDLSELLREIAETFLYSHTSHSVLLKIDDYPVMVNCDRPRIEQAIINLLSNAIKYSPGAEKVYMGLNIQDRFASVYIRDEGTGLTREQQRQLFTRFYRAENTKGISGLGLGLYLTRQIIENHNGEVGVKSKYGEGSEFFFTLPLEENLNTSTPRK
>NZ_CP042476.1|WP_146830656.1|576725_577070_-|response-regulator
MKEIFIVEDDQDIRELIELLLSDAYTVRSFPNAERFKNSIATGRPDLILMDIMLPDGNGQEMCKKLAQNKETNEIPVILMSAHTDIVDETACDFIAKPFDVDDLLLRIEKHINA
>NZ_CP042476.1|WP_168194545.1|576519_576675_+|hypothetical-protein
MNAMNVFFENYRKATHGFNILVKILIALILAFIFIAVIFAIVGIVPDILNY
>NZ_CP042476.1|WP_146830654.1|575011_576157_-|saccharopine-dehydrogenase
MNHPHKIIIAGAGGIARAAGLILMEWSKVPPSLYIGNRTLSRARDVANWIQEGTSKKCEVQSFSLSPGEVTTEMEEIFQKSDIILDCLPGGLAPEIAAMALDYNLHYVNLTEYVSETNEIIEMAKNAQTGFALQTGLAPGYINILAHSLYRDFCKDFDVEVAGKLEFKVGALTRHAVAPHFYGFTWSPVGVATEYLNDAVVIRNFRKTKLPALSERAIIIIDGITYEEDLTSGGAADLPDALEGKVNTLDYKTLRHPGHYSWVDEQIKKSGNEKAAVKSLQEKMQEVIPNIEDDQIVLYAAVEGKDAQGILRRREISKRILPQYVGKHLLRAIQTTTAVPMLQTAQMLLEEGRKGIILQSEIDPVKFLEGNFIKRVYGGNK
>NZ_CP042476.1|WP_146830651.1|573998_574424_-|transporter-substrate-binding-domain-containing-protein
MKNILFILLLVSAACDFPKDAEGSWVDAQNNYLKVGVSINPPFTISERDSLKGMEIDLLKKFAGKENLKIRFFEGSESELIKKLENYELHVIAGGFDKKTLWKQKAGTTSPYDKEHVFLIAKGENQLLKKLETHIFQNSNK
>NZ_CP042476.1|WP_146830649.1|573048_573999_-|cation-diffusion-facilitator-family-transporter
MKSLHDHDLPGRLQKSLKKALKMEWITVFYLISVVILMYLVMGSSQAMKTAWLEDLLSLVPSIAFIIANKVNKKKPNHKFPYGYHRVFSITFLTGAVALLAMGIFLVYDSSMALIKAEHPTIGNKMFFGYQVWMGWIMILALLYSAIPAMILGFKKLPIAKKLHNKLLYTDASGQKADYMTAFAAIVGILGVGAGFWWADAAAALVISFSILHDGYQHVTASIQDLMDRYPRTTDNKKEDHRIAEVKDIVKSWDWVKDAKVRFREHGQVYLGEIAVVPHTEATLDNLDQGYEILRNYHWKIHDFSIAPVKELPKWE
>NZ_CP042476.1|WP_146830668.1|584153_584996_-|metalloprotease
MKWQGRRQSTNVDDRRGKSTGGKIAVGGGLIGLIFLAIQLFSGGDATEILNQIQTDPGSATEERELTAEEKELGQFTATVLADTEDVWNNIFSQHNATYREPGMVLFTDAVRSACGGASSASGPFYCPGDEKIYMDLVFFEELRTRFGAEGGDFAIAYVIAHEVGHHIQHLMGTAGEVRNRQQQLSQGEANQLSVALELQADFYAGVWAHHNRQYLEDGDIREALSAASAVGDDAIQKRTAGRVVPDAFTHGTSEQRMEWFKRGFTTGDISQGDTFRGVR
>NZ_CP042476.1|WP_146830670.1|585364_587563_+|prolyl-oligopeptidase-family-serine-peptidase
MKKITSRSTATATLLSLYLLAGVGCSGSKNTNNPDTAPVVEQASLSNAPAITPPPVASKIPKELSIHGDTRIDNYYWLNERENPKVLDYLKAENAYTQEVMADTRDLQEELFNEIVARIKQTDESVPYKRNGYFYYTRYEAGKEYPVFVRRKEVMSAPEEVMLNANERAEGKSYYAPAGMSMSPDNLLMAFGEDTVSRRQYTLRFKNLKTGEILADQIPNTTGGAVWANDNKTVFYTMKDPSLRSFKIFSHTLGTPASQDKEVYHEADETFSTFVFKTKSQKYIIIGSGSTLSQEYRFIDASNPNSTFKVIQPRERGLEYSLDHFGDSFYLLTNKDGATNFKLMKTPVTKTSKENWTEVIPHRADTYLENVEIFKDYLVLQERRNALTHLRIKKWNDPATDYYVDFGEEAYTAGISINPDFDSKVLRYSYSSLTTPSSTFDFNMETKEKSLLKEQEVVGDFDKKNYESKRIYATAKDGTKIPVSLVYRKGIKLDGQNPTLQYAYGSYGSSTNPAFSSTRLSLLDRGFVYAIAHIRGGQEMGRQWYEDGKMMKKKNSFTDFIDVSEYLIQQKYTSPENLYAQGGSAGGLLMGAVVNMRPELYKGVHAAVPFVDVITTMLDTSIPLTTGEFDEWGNPAEKAAYDYMLSYSPYDNVERKAYPNLLVTTGLHDSQVQYFEPAKWVAKLREMKTDDNLLLLHTNMDAGHGGASGRFQPYRDTALQYAFFLKLAGLTE
>NZ_CP042476.1|WP_168194547.1|587644_587809_-|hypothetical-protein
MKTVPPSTAKKDYYQDYISQINWDWLFFKSLTIFGGILFLGVIAFILWYLPAIR
>NZ_CP042476.1|WP_146830672.1|588114_589689_-|serine-hydrolase
MKKSSLPLLMLVSFLLIFTQNNWGQGLSTDQIDNLVQKTMKTFDVPGMAVAVLKDGKVLHMKGYGTRSLEKGGKVDENTLFGVASNTKAMTAAALAILIDQGKLEWDTKVTEVIPEFKLYDPYVTSEFTVRDLLTHRSGLGLGAGDLMVWPSLNTTSKEELIHNLRYLKPVSSFRTKYDYDNLLYIVAGVVVEKVSGLDYETFITQNIFRPLGMNNSVVNWNLIKDKTNVIEGHAPTEGKLVTVGLSFTPAADPAAGVYSSVYDMSKWVQMQLDNGKFGTQLKDSIFSKEQHREMWTPQTIIRTGPGDYNTQFKAYGLGWNLSDVNGYKEVTHTGGLLGIVSQVTMIPQLELGIIVLTNQQSGAAFRSVTNSIKDAYFGIKGKDRIAQYHKNVLRNEKYSDSVVANVWKNVEAVQKNQKMSTAELSKYSGAYLDPWFGKVNILVKDGKLRFEAEKAPDLHGEMSFYKGNSFVVKWDDRSLNGDAFAVFSLDREGEANGFTMEPVSPMTDFSFDFQDLEFEKQRK
>NZ_CP042476.1|WP_146830674.1|589895_590420_-|SgcJ/EcaC-family-oxidoreductase
MNTINYFRIATACLGLTIIAAGCNTSTEKEKEVRVEKEVAEVKTDMAAVKAEIQELENTWAQGDNARDAERISSFYAEDAVIMSADKPMVSGRNAIKKDLETSMAGREKGSTAKYEVLDVYGDENVVTEIGKSTRMDAAGKVISTGKYIAIWEKRDGKYVCVREMSFTDKEISQ
>NZ_CP042476.1|WP_146830676.1|590754_592203_+|GIY-YIG-nuclease-family-protein
MNDQLFAVIDVETTGGGIAGNRLTEICIVLMKGAVVIDKYSTLINPEKHIPLQITALTGIDNDMVANAPKFPEVAKKIEEMTREAIFVAHNVNFDYNVLRNEFKDLGFEYSRKKLCTVRLSRKLIPGLFSYSLGRLCDSINIPIVNRHRAEGDTDATVILFQRLLSLDDDFKVIRSFLHAHSRQATLPPHLCAEQIYELPESPGIYLFKDKNHKVVYAGKAINIKKRVISHFYDKLSKEYQLGQETYYIDYETTGNELMALLLEAEYIRKYYPKYNQAQKRPGTIYQIISYVNQRGIIQLALGKTKLIRDSVGTFYSRAQATEKLEQLCEMFKLCPRYCTLQSNVEICSHYRIKNCEGVCDGSELVENYNEKVEAAIASLNRESSTYVIREKGRHYEEEAFVLVRDGRYLGFGYVDKNAQVSCIDDFEPFLKLQQATYHTNKILSNYVRKQGAPNILFFDDFSTAGPRPSQNVTQELFGMSC
>NZ_CP042476.1|WP_146830678.1|592402_593266_-|DUF2179-domain-containing-protein
MKKARNINWRSIFSLKSITLILLGVLFALIGLQGFMVPNNFLDGGVTGLTILLTGLANIHISLILLAFNLPFVIIGYKKISHTFGLQSLIAMLLLSAGMYFIEIPAFTHDKLLIAVFGGFFIGLGIGLVIRGGGVVDGLAVIAHYTEKKSAFTSGEIILSLNTLIILGAAYRFGIETGMYSILVYYTAMKTTNYVVEGFEEFTALNIISADQEIIKATLVKDFGKSISTYKGERGSLPGSFNIKQDCDIIMTVVTRLEVHRIKKAIALIDPHAFIFVNSIKEVNSKT
>NZ_CP042476.1|WP_146830680.1|593397_594447_-|ACR3-family-arsenite-efflux-transporter
MAVKKEIAFFEKYLSLWVAFCIAGGIFIGFIAGDAMQVMSTWEIYRVNIPIAVLIWMMIYPMMLQVDFTSIKKIGRRPKGIVLTLVMNWLVKPFTMAFFAWIFFTKLFAAFIDPTLAGEYIAGAIILGAAPCTAMVFVWSYLTDGDPNYTLMQVSVNDLIILVAFVPIVGLLLGITDVVVPYETLILSILIYVVIPLVAGIITSNLLIKRHGADWFKTNFLPKLKPVSIIALLLTLVLLFAFQGENILNNPLVIFLIAVPLIIQTYFIFFATWFAGKKLKLTHPVCAPAAMIGASNFFELSVAVAIGLFGLQSPAALVCVVGVLVEVPVMLSLVAYANKHKYEVKGISQ
>NZ_CP042476.1|WP_146830682.1|594446_595082_-|protein-tyrosine-phosphatase
MTRKTSELFEKVDKNITALKLDSIPKERKKLLQSLVAYIQEKITKGQPVRLNFICTHNSRRSHLSQVWAQALAAYYNIPNIFCYSGGTEATALFPVAAETLEEHGFEIAKLSEEKNPVYSIKFGENEHPVIGFSKTFDDNFNPKSGFAAIMTCSQADAGCPFIAGAEKRIPVTYEDPKEFDGTGQQKQKYKERSEQIATELKYVFSEIKVK
>NZ_CP042476.1|WP_146830684.1|595114_595993_-|arsenite-methyltransferase
MTTSEELKKIVQEKYAEIARGENDSCCGGNSQVPEVYNIMTDDYSGLEGYNPDADLGLGCGLPTGFAKIRKGDTVIDLGSGAGNDCFIARHEAGETGKVIGIDFTEDMIKKARVNAEKLGFNNVEFRQGDIENMPVSNDLANVIVSNCVLNLVPNKQKVIKEIYRTLKPGGHFSISDIVLVGSLPEKLKMDAEMYAGCIAGAIQKDEYLEHIRNTGFQNISIQKEKQIVIPDAILDRYLDQTEKEAFKNGHTGIFSITVFAQKPGNKPLNFLKSSIEEAENFCGPAGVSGCC

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Crispr_ID: NZ_CP042476_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042476_3

2351088-2351180

Orphan

Consensus_repeat	Method
GGGATTTCGCTTTCTCATCCCGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042476_3

>merge|NZ_CP042476|3|2351088-2351180|CRISPRCasFinder
GGGATTTCGCTTTCTCATCCCGCTTCAAGGAATGTTGATGTATGCCGCCCTTTCAGGGCTTGGATGGTGGGATTTCGCTTTTTCATCCCGCTT

>NZ_CP042476|3|3|2351088-2351180|CRISPRCasFinder
GGGATTTCGCTTTCTCATCCCGCTT	CAAGGAATGTTGATGTATGCCGCCCTTTCAGGGCTTGGATGGT
GGGATTTCGCTTTTTCATCCCGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042476.1\|WP_146834661.1\|2345670_2346957_+\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|188463
NZ_CP042476.1\|WP_146834676.1\|2348981_2350346_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NZ_CP042476.1\|WP_146834689.1\|2354255_2354957_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|376576
NZ_CP042476.1\|WP_146834673.1\|2348528_2348915_+\|group-III-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381257
NZ_CP042476.1\|WP_146834664.1\|2347134_2347434_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP042476.1\|WP_146834702.1\|2358795_2361945_-\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NZ_CP042476.1\|WP_146834652.1\|2342933_2343524_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP042476.1\|WP_146834699.1\|2357552_2358695_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
NZ_CP042476.1\|WP_146834685.1\|2353855_2354254_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP042476.1\|WP_146834670.1\|2348159_2348450_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146834705.1\|2368770_2370672_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379481
NZ_CP042476.1\|WP_146834682.1\|2353024_2353843_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP042476.1\|WP_146834708.1\|2370792_2372217_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NZ_CP042476.1\|WP_146834693.1\|2355016_2356243_-\|amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|365946
NZ_CP042476.1\|WP_146837599.1\|2351800_2352994_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|273659
NZ_CP042476.1\|WP_168194587.1\|2345090_2345666_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|214870
NZ_CP042476.1\|WP_146834655.1\|2343560_2344877_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146834679.1\|2350438_2350786_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP042476.1\|WP_146834667.1\|2347442_2348039_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223736
NZ_CP042476.1\|WP_146834696.1\|2356395_2357460_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579

Protein	Function_ID	Function_description	E-value
NZ_CP042476.1\|WP_146834661.1\|2345670_2346957_+\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|188463	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase. This enzyme represents one of at least two mechanisms for reclaiming CoA from butyryl-CoA at the end of butyrate biosynthesis (an important process performed by some colonic bacteria), namely transfer of CoA to acetate. An alternate mechanism transfers the butyrate onto inorganic phosphate, after which butyrate kinase transfers the phosphate onto ADP, creating ATP. [Energy metabolism, Fermentation].	7.01792e-101
NZ_CP042476.1\|WP_146834676.1\|2348981_2350346_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NZ_CP042476.1\|WP_146834689.1\|2354255_2354957_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|376576	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.	2.41081e-31
NZ_CP042476.1\|WP_146834673.1\|2348528_2348915_+\|group-III-truncated-hemoglobin	gnl\|CDD\|381257	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb3s include Campylobacter jejuni Ctb, encoded by Cj0465c, which may play a role in moderating O2 flux within C. jejuni.	1.9156e-45
NZ_CP042476.1\|WP_146834664.1\|2347134_2347434_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.09686e-40
NZ_CP042476.1\|WP_146834702.1\|2358795_2361945_-\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.73897e-07
NZ_CP042476.1\|WP_146834652.1\|2342933_2343524_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	7.7052e-16
NZ_CP042476.1\|WP_146834699.1\|2357552_2358695_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
NZ_CP042476.1\|WP_146834705.1\|2368770_2370672_-\|hypothetical-protein	gnl\|CDD\|379481	pfam14121, Porin_10, Putative porin. This family of membrane bet-barrel proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 655 and 722 amino acids in length. SRI_1264 is identified by Gene3D as a membrane bound beta-barrel. These sequences are putative porins.	2.95211e-178
NZ_CP042476.1\|WP_146834682.1\|2353024_2353843_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	5.01124e-09
NZ_CP042476.1\|WP_146834708.1\|2370792_2372217_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	3.92979e-38
NZ_CP042476.1\|WP_146834693.1\|2355016_2356243_-\|amino-acid-dehydrogenase	gnl\|CDD\|365946	pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.	3.22154e-31
NZ_CP042476.1\|WP_146837599.1\|2351800_2352994_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|273659	TIGR01499, Folylpolyglutamate_synthase, folylpolyglutamate synthase/dihydrofolate synthase. This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.31648e-122
NZ_CP042476.1\|WP_168194587.1\|2345090_2345666_+\|YceI-family-protein	gnl\|CDD\|214870	smart00867, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	0.00298655
NZ_CP042476.1\|WP_146834685.1\|2353855_2354254_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	3.81108e-26
NZ_CP042476.1\|WP_146834679.1\|2350438_2350786_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	2.00064e-20
NZ_CP042476.1\|WP_146834667.1\|2347442_2348039_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.18851e-36
NZ_CP042476.1\|WP_146834696.1\|2356395_2357460_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	5.37157e-129

>NZ_CP042476.1|WP_146834679.1|2350438_2350786_-|cupin-domain-containing-protein
MKSASLINDLEYNDTKPAVKVLMDTDSSRELRIAMKKGQVMKEHKTPYPIVVEIFEGRISFGVEGRNHDLVKGDLVYLDGDVPHDLRADEDSTVRLTLSKNDSASRVEGVADRSS
>NZ_CP042476.1|WP_146834676.1|2348981_2350346_-|oxygen-independent-coproporphyrinogen-III-oxidase
MNVNLIQKYNVAGPRYTSYPTVPYWNTDLFSVQTYKDSLKRSFSESNEKEGISLYIHLPFCESLCTFCGCNKRITKRHEVESPYITAVLKEWELYTNLLPGTPYIREIHLGGGTPTFFSPENLRMLIEGIFEKSLRAEDFDFSFEGHPNNTKIEHLETLYDLGFRRVSYGVQDYNLEVQLAIHRFQPFVNVKNATENARKTGYTSVGHDIIFGLPFQTVEHIKTTIEKTKELMPDRIAFYSYAHVPWIKGNGQRGFEEKDLPTAAVKTEMYETGKQLLAEAGYVEIGMDHFALKTDSLYKAVEDKKLHRNFMGYTTSKTKVMIGLGVSAISDSWTGFAQNEKKIEDYYDRLDQNELPLYRGHILTGEDEMIRQHILNLMCRLETSWEDPQMFFPELFGVLENLREMENDGLLKIKEQSIEITEKGRPYVRNVCMAFDMLLQRKAPETQLFSMTI
>NZ_CP042476.1|WP_146834673.1|2348528_2348915_+|group-III-truncated-hemoglobin
MKEDIQNRGDVYTLVSAFYTKVRDNKEIGHFFNETIHNWPEHLEKLTDFWETNLFMVSKFRGNPMKAHKEVDQQFEHSIEQKHFGEWLNMWFATVDELFEGDRANIAKNRARNMAHNLFMNMYQSRLS
>NZ_CP042476.1|WP_146834670.1|2348159_2348450_+|hypothetical-protein
MKLYDVLYKDFEDLFVGYSAVAVILSSCLGSAAALVILMNGHDVFQMTQLFLVVVVCMGYNATVLANLKPKIVFNALIISLVVSVLLIAYNVFLRY
>NZ_CP042476.1|WP_146834667.1|2347442_2348039_+|cyclic-nucleotide-binding-domain-containing-protein
MISTNLLLDFGGKITTYPKGAQLFREGETALNYYQVVSGEVKMNNYNLDGKEFIQGIFASGQSFGEPPLFADVKYPANAEALSDSEVIQLHKSQFLELLASHPDVHLKMTETLAKRLFYKAIMVSEISSQEPEHRILRILDYLKKHVHKLDGPFSFKVDLTRQQIADLTGLRVETVIRATKALEKKGELKIKSRKVYR
>NZ_CP042476.1|WP_146834664.1|2347134_2347434_+|thioredoxin
MKSSFSEIIKDEKPVLVDFFADWCGPCKMLAPILKDAKAELGDSVKIVKIDVDKNQELAAKYQVRGVPTLILFKKGEQLWRQSGVVQKADLVQLIKSHA
>NZ_CP042476.1|WP_146834661.1|2345670_2346957_+|acetyl-CoA-hydrolase/transferase-family-protein
MNTSLNIVSAQEAVSLIKSGQRIFLQGAAMTPNVLINALCERYNELKGVELFQIHTEGEARYTIAPFNEAFITISCFVGGNVRKAVNSTFGAYIPIFLSEIHLLFRKNILPIDVAFIQVSPPDKHGYCSLGVSVDITLPAIQTAKMVIAQINPNVPRTHGDGIIHIDRIHALVEVNEPIHTSVISTPTKVELQIGKHVAALIEDGATLQMGIGGIPNVVLNNLMNHKRLGIHTEMFSDGILPLIEKGIITGEEKKVKTGKLVTCFAVGTQKLYDFIDDNPVVHFKEAAYTNDTAIIRKNPKVTAINSAIEIDLTGQVCADTIGKYQYSGVGGQMDFIRGASLSEGGKAIIAMPSVTNKGISKIVPFLKEGAGVTTTRAHVHYIATEYGIVNLYGKNLKQRAKELISIAHPDHREALEKATFERLHILV
>NZ_CP042476.1|WP_168194587.1|2345090_2345666_+|YceI-family-protein
MKIFKIITFLLMFTTLGFAQSASSNKTVNILPNSKLTITGDTNISDFSCAFNSQMIPSTRKVKVKEVNSEFHFENAILKLDNTGFDCGSKGINKDFHALIKTEEYPEISLELKKLCINTPSQATADLFISIAGKTKAYKLPVKIVDGKIPQYKGNLSLNINDFNLKPPKKVFGLIVVKEDIDINFHLNVEK
>NZ_CP042476.1|WP_146834655.1|2343560_2344877_+|hypothetical-protein
MKNSIKYLALLFLAVFALQAQAQQRDLDNFRPLDQRGINVFEAPKDTVSTFDGVRVRVGGASTIQFQALDHESNGTWNLDGTPVAPGTTATGKLVEIGSNFNLPTANLDLDVALAPGLRMHLRTYLSSRHHPEPYVKDGYIQVDGLDFISEGLMSDLMDNLTVKIGHMEINYGDAHFRRSDNAQTIYNPFVENLIMDSFTTEVGAEVYYRQSGFLAMVGATNGKLNQNVSNPSANGVSWVGKLGYDNAQFADPDGLRFRLTGSVYTTHQVPTAYLYGADRAGSRYYMVMEQVGATPAGNFSSGRYNPSFGNEMTAYMINPFVKFGGLEFFGTYEIADGKRSTQVDKRSFTQMAGELIYRFGADEKFYVGGRYNTVNGDDVSGVEIDITRMQLSAGWFLTKNVLTKIEYVNQEYDGFRPNSKFHDGKFNGLMVEAAISF
>NZ_CP042476.1|WP_146834652.1|2342933_2343524_+|YceI-family-protein
MNTLKNLKLALGTLLIMIVTTQISVAQTYNLNNASSSLKVEGTSNVHDWELEAKEQQGKIVAELDNGQLVKITQLDFTVKAESLKSGKSGMDKNTYKALNTDKHKQITYKLTKVNNIDCTKTGSCKVTTSGTLTIAGNSKPIDITFDAKITGDKITLTGSKALKMSEYKVDPPTAMFGTITTGDQVTIKFQSNFTK
>NZ_CP042476.1|WP_146837599.1|2351800_2352994_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MFQQLPMYQRIGAAAFKKDLSNTILLATHLKKPQHNFKSIHVAGTNGKGSVSHMLASVLQEAGYKVGLYTSPHLKDFRERIKINGREIPEESVINFIAENKSFFEANKLSFFEMTVGMAFDYFSREQVDIAIIEVGLGGRLDSTNIITPQLSVITNIGLDHTEILGNSLAEIAAEKAGIIKPGVPVIIGENQPETKPVFSETAARLNSEIIFAEDSEVENYPSDLTGAYQVKNIRTVLTALKRLTKNSSWKITEENITQGLLKVKINTGLRGRWDILQVEPRVICDTAHNAEGLKYALSQLASEQFDRLHIVMGVVNDKDLGKILPLFPKEAIYYFCKPDVPRGMDAEFLKGNAKEFGLKGEVYSSVSKAYDEALKSASNKDVIYVGGSTFTVAEII
>NZ_CP042476.1|WP_146834682.1|2353024_2353843_-|energy-transducer-TonB
MSFLDTKHEKKSFTITVIIHVLLIVLLLFLGLKYLDPPPESGIAINFGNSEVGSGDVQPTEPVKSAPQPTTNPVVSQPKPVVEEVVTQESVEAPVIEKKTEKKPVVNEKPVEPKKVEPAKQPDPTPSKSTTDALSSILNGPKSNGTATGGEGNDQAAGDKGSPDGDPSASSYYGNGMGLDGDGNYRLGGRRALNKERIVQDCNEAGLVVVQIEVNQSGQVTKATPGVKGTTNSAACLLDPAKRAALATRFNSDSKAPARQVGTIVYNFKLSE
>NZ_CP042476.1|WP_146834685.1|2353855_2354254_-|biopolymer-transporter-ExbD
MNLRSRNKVSADFSMSSMTDIVFLLLIFFMLTSPAITPEALDLILPKAKGKTTNVSSLSVSITKDLQVYINSERVSQSALEATLKQKLAGEEDPTIILRAEEGVPIEKAVNVMDIANRNRYKIVLAVKPENN
>NZ_CP042476.1|WP_146834689.1|2354255_2354957_-|MotA/TolQ/ExbB-proton-channel-family-protein
MLYFFQQEDLTQTALEVEPVVEEKTLSLFDLMMSGGIGGQVIIGILFILLFVAVYIYFERLFAIKAATEVDQNFMLQIKDSVLNGNIESAKIRCAQTNSPVARLTEKGISRIGSPLEDINTAIENAGRLEVYKLEKNVSILATIAGAAPMIGFLGTVIGMVLAFHALATSSGQAEMGVLAEGIYTAMTTTVAGLIVGIIAYIGYNHLVVKTDKVVHQMEATAVDFLDLLNEPA
>NZ_CP042476.1|WP_146834693.1|2355016_2356243_-|amino-acid-dehydrogenase
MKELLNLYENKSPEIVFNWKDRETEAEGWTVINSLRGGAAGGGTRMRKGLDMNEVLSLAKTMEVKFTVSGPAIGGAKSGINFDPADPRKKGVLERWFKAVSPLLKSYYGTGGDLNVDEIHEVIPITEDCGVWHPQEGVFNGHFQPTEADKINRIGQLRHGVIKVLENSQYTPDINRKYTVADMITGYGVAEAVKHYYSIYGGDVKGKKAIVQGFGNVGSAAAFYLAQMGAKIVGIIDRDGGLINENGYSFEEIKDFFLNKSGNTLKNHDLIPFDEMNEKIWKLNAEIFAPCAASRLVTQSQVESLIDGGLEVISSGANVPFADKEIFFGPIMEHIDGKVSVIPDFIANCGMARVFAYFMERRVQMTDEAIFNDISMTIQNAIQNTYDNNSSKTNISRTAFEIALKQLV
>NZ_CP042476.1|WP_146834696.1|2356395_2357460_-|anhydro-N-acetylmuramic-acid-kinase
MKKNEYKIIGVMSGTSLDGIDLAFIQFNKIGHWSFKIESSATIPYSGDWKADLTNAIKEDPEELQELDERYTEYLAKVISKFIKDNNITDLDAVCSHGHTIKHEPENGLTLQIGNLPELAELTGQTVVCDFRVQDVALGGQGAPLVPIGDKLLFPEYKYCLNLGGFANISTSVKGQRFAYDICAVNTVLNYYAEKLGMEYDRDGEVARSGHLNPELLEELEGLPYYKQPAPKSLGIEWVNKEILPVLKKYEADIPSILRTWCMHVAMQISKELGNEEDEDVLVTGGGCFNTCLIQQIKKMTQTRLVIPSAEIINFKEALIFGFLGVLKLRGEVNVLSSVTGAENDHSSGVIFLP
>NZ_CP042476.1|WP_146834699.1|2357552_2358695_+|acyl-CoA-dehydrogenase
MDFKLTEEHIMIRDAARDFAKSELLPGVIERDEKQEFPAEQVKKMGELGFLGMMASPEYGGGGMDTVAYVLAMEEISKIDASASVVMSVNNSLVCWGLDTFANEAQKEKYLAKLTTGEKLGAFCLSEPEAGSDATSQKTTAIDHGDHYILNGTKNWITNGKSADYYLVIAQTDREKRHKGINAFIVEKGWPGFEIGVKENKLGIRGSDTHSLIFNDVKVPKENRIGEDGFGFKFAMKTLSGGRIGIAAQALGIAAGAYELALEYSKVRKAFGTEICNHQAIAFKLADMHTSIEAARHLVMKAAWDKDNGNNYDLSGAMAKLYASKVAMDVAVEAVQVHGGNGYVKEYHVERLMRDAKITQIYEGTSEIQKIVISRSILNK
>NZ_CP042476.1|WP_146834702.1|2358795_2361945_-|T9SS-type-A-sorting-domain-containing-protein
MKSFTITGEKGTRMYLGGALFEIKKPGISNTIFAILGIILLILAPLQTTAQNIRGVAPVQTPLGGFAVDGNAYVNLPVSGDLDGGDLFFERGTNDNTAYPGGLFRADYFQNPPVPLGNGVFTDVTNPDLFVHPNTFLFRDDITNNDPTIFTSTNKINDNPNTYTWGPGSSPNKNEIQSALAHFTWGDPELDGNPGDLWMIFAADREVTNGSSYIDFEILQNTLTKIGTTSGSFESAGPDGGRTIGDILVTIEFTQGGGQATAVIRRWNGSSYVVYTGFPDKSIYISNNTVATVVPYSIYNQDPLASGEFEGYYQYSINQWAEGAVNITALFGPGNPCFNISTLFVRTRTSGSSGQSELKDFPIGPIQLNLDLTPDSPVIGSVENCGPWEGTLDATECEGTVKWYDVEFDGELLYTGASYDPGEISETTSFWVSCTVNGCEGPRAEVTVTIYDIPDFDVTNLDSCEDGETGGASFDLNDAISNDDPGTLSFYLLEADAIVPQNAISDPTDVTVLLTDSPETFWARLDNDDDGDEDCHTIKSFTVTVYDNPDLVVKDLSDCEEGETGFQSFDLNDAVTTPDGNITFYPTEDDAINETNALTEMEAMDVSVPVAGATYWVRSENTDDPTCYTIESFDITVTDNPDLVVTDLDDCEEGTTGAQTFDLNDAVTDDGGGDLSFYESELDANNEDNAIADPTAVSVSIAESPKTFWVRSENETNEDCFSVESFTVTVYDNPDVTTSNPEPICLGESVNLANYVTDADGGTLSYHSTLEDAEDGMNELMSTIVSPGLGSHDYFVRSENTSDSECYSVATITVTVITCDDFEGCTLGYWKTHTDRWCDVYLTCDIYGEIFMDAPAELADLTLLEVLNLTGGGVYNLGRQSVAALLNACTEDVNYELATPGDVIDYVVANFGNAGEAGSYLDMLNQAGCPLDGTPATTEPSEDCINGAASEPVSGDTNEQSVEVNGFNVSPVPFRESLNVQYDFDYVSNAVIQMYDMQGRLLSTQKEANASKGKVTNLSINFRTLPSQVYVIKVTTDRDVFTKKIVSDK
>NZ_CP042476.1|WP_146834705.1|2368770_2370672_-|hypothetical-protein
MREILSLAFLLFFTFSIRAQQPTGRVQGRDLPAQKDSLQKPPVTAYKIISVKGDTTYVDTTLSIQKDYRFNYLRKDNFELLPFANVGQTYNSLAHEFKDESLLPQLGARARHFNFMEVGDINYYEVPTPLTELFFKTVPEQGQALDAFFTVNTSPRLNFSIAYKGLRSLGKFQNSLTSTGNFRATLSYNTLNNRYRFKTHFVSQDLLNRENGGLDEVALGQYINKEEEFEDRSLLEVNFENAESILYGKRFYLDQEFYLLPGKISRVSLFHIIDFSDKKFIFRQDAPFPEFGESLRSSNLNDEEKLRHINNRAGVAFTNTSLGRLAGKVGHSYYNYGYNSLIFFGNDVVTNRLRGDNYSVGGDYSNNFGPLKVYGDAMVNLAGEFSGHYFTGGITYALNSNNLLNVEINSNERAPNFNFLLHQSDYLNYNWQNDFANQGTRVLTASLVSPRLVNVKAAITNINNYAYFAHTEDGGVKPFQYGGALNYLKLKAQREFHYGKFSLDNTLMYQKVAKGGEVFNVPEFITRNSLYYRDHLFQRALYLQTGFTLKYFTSYKMNGYDPVLAEFYVQNDAEFGNYPVVDFFFNGKIRQTRIYFKLEHLNSLITGNNNFSAPGYPHRDFLVRFGLVWNFFL
>NZ_CP042476.1|WP_146834708.1|2370792_2372217_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKRTIKYLLLFVLSIGTFTSCSEDDLEPTLAQSKSIETSINSLNDLDALLIGAMERMSASSYYGRDIIILGEIFSDNTTSNANSNRFVVEAQMDLNAQSAIASTLWSQIYGVIASANIIIGAEGIAGDEARINHVKGQAYALRALAHFDLVKFYGQQNVGGSTLNLSAVGVPYVTAFRDNDNLFPSRNTVQEVRDLAYADLAMAQSLMSASLNNPSKEFITTHAAYAIEARIANYFGDHARALTAAKTVIDSGVFSVASEGSFLSNFRSRGSANSIFEIANTPTDNPGINGLANIYQVGSYGDVVALPNLAAIYEDGDVRGATPYDPTAGVLPTTVIGESANGTLRNVGKYPRTAPFEDNIPVIRYEEIILIYAEALIRTGGADALTWLNLIPANRGASLYTEATIANVLLERRKELAFEGFRFHDLARTGMDVKSVDIIQLHNGVAYGAYNFAMPIPTSEVGVNANINQNAGY

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Crispr_ID: NZ_CP042476_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042476_4

2930112-2930203

Orphan

Consensus_repeat	Method
CAGAATAGCGCAGAAATTAAACCTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042476_4

>merge|NZ_CP042476|4|2930112-2930203|CRISPRCasFinder
CAGAATAGCGCAGAAATTAAACCTTACAAACGGAACCTGGAATATTAAGATCTCCAGCAGATTTTGCAGAATAGCGCAGAAATTAAACTTTA

>NZ_CP042476|4|4|2930112-2930203|CRISPRCasFinder
CAGAATAGCGCAGAAATTAAACCTTA	CAAACGGAACCTGGAATATTAAGATCTCCAGCAGATTTTG
CAGAATAGCGCAGAAATTAAACTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042476.1\|WP_146836159.1\|2937016_2937496_+\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP042476.1\|WP_146837674.1\|2921382_2922726_-\|dNTP-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234897
NZ_CP042476.1\|WP_146836131.1\|2929420_2929879_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146837677.1\|2931100_2931673_+\|NAAT-family-transporter	unknown	unknown	gnl\|CDD\|225006
NZ_CP042476.1\|WP_146836143.1\|2932499_2932805_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146836104.1\|2922788_2923163_-\|GxxExxY-protein	unknown	unknown	gnl\|CDD\|372581
NZ_CP042476.1\|WP_146836135.1\|2930375_2930954_-\|DUF3109-family-protein	unknown	unknown	gnl\|CDD\|378636
NZ_CP042476.1\|WP_146836129.1\|2928613_2929306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042476.1\|WP_146837667.1\|2917930_2918380_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP042476.1\|WP_168194596.1\|2927645_2928470_-\|DUF4412-domain-containing-protein	unknown	unknown	gnl\|CDD\|373032
NZ_CP042476.1\|WP_146836123.1\|2925926_2926904_-\|ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|215272
NZ_CP042476.1\|WP_146836101.1\|2918417_2920193_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP042476.1\|WP_146836146.1\|2932820_2934407_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP042476.1\|WP_146836153.1\|2934946_2935537_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NZ_CP042476.1\|WP_146836149.1\|2934390_2934840_-\|dCMP-deaminase-family-protein	unknown	unknown	gnl\|CDD\|238613
NZ_CP042476.1\|WP_146836156.1\|2935961_2936705_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP042476.1\|WP_146836141.1\|2931899_2932508_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP042476.1\|WP_146837670.1\|2920282_2921254_+\|DUF3078-domain-containing-protein	unknown	unknown	gnl\|CDD\|378621
NZ_CP042476.1\|WP_146836107.1\|2923325_2925767_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|178056
NZ_CP042476.1\|WP_146836138.1\|2931702_2931900_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042476.1\|WP_146836159.1\|2937016_2937496_+\|DUF4440-domain-containing-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	1.18339e-08
NZ_CP042476.1\|WP_146837674.1\|2921382_2922726_-\|dNTP-triphosphohydrolase	gnl\|CDD\|234897	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	3.96626e-145
NZ_CP042476.1\|WP_146836123.1\|2925926_2926904_-\|ribonucleoside-diphosphate-reductase	gnl\|CDD\|215272	PLN02492, PLN02492, ribonucleoside-diphosphate reductase.	0
NZ_CP042476.1\|WP_146837677.1\|2931100_2931673_+\|NAAT-family-transporter	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	1.8603e-30
NZ_CP042476.1\|WP_146836104.1\|2922788_2923163_-\|GxxExxY-protein	gnl\|CDD\|372581	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.21161e-47
NZ_CP042476.1\|WP_146836135.1\|2930375_2930954_-\|DUF3109-family-protein	gnl\|CDD\|378636	pfam11307, DUF3109, Protein of unknown function (DUF3109). This bacterial family of proteins has no known function.	3.51145e-116
NZ_CP042476.1\|WP_146836149.1\|2934390_2934840_-\|dCMP-deaminase-family-protein	gnl\|CDD\|238613	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.	1.12964e-39
NZ_CP042476.1\|WP_146837667.1\|2917930_2918380_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.30176e-49
NZ_CP042476.1\|WP_168194596.1\|2927645_2928470_-\|DUF4412-domain-containing-protein	gnl\|CDD\|373032	pfam14371, DUF4412, Domain of unknown function (DUF4412). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is typically between 75 and 104 amino acids in length.	0.000195208
NZ_CP042476.1\|WP_146836101.1\|2918417_2920193_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP042476.1\|WP_146836146.1\|2932820_2934407_-\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	5.35495e-81
NZ_CP042476.1\|WP_146836153.1\|2934946_2935537_-\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	1.27061e-49
NZ_CP042476.1\|WP_146836156.1\|2935961_2936705_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	1.53653e-32
NZ_CP042476.1\|WP_146837670.1\|2920282_2921254_+\|DUF3078-domain-containing-protein	gnl\|CDD\|378621	pfam11276, DUF3078, Protein of unknown function (DUF3078). This bacterial family of proteins has no known function.	2.99987e-26
NZ_CP042476.1\|WP_146836107.1\|2923325_2925767_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|178056	PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit.	0
NZ_CP042476.1\|WP_146836141.1\|2931899_2932508_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	8.243e-13

>NZ_CP042476.1|WP_146836131.1|2929420_2929879_-|hypothetical-protein
MRKITLLLFLLLPACCLFQNSPIFAQQYADLNHQNPAVPASTNIIFSVDPKNNGVNEVFIREPDIEAQLYKLKGECYRCEFYSGSIEGPFTTKDSRIRPGKKATLTIHTMQNLMPGKVFDPGPYPPGSRFGLGRTKATVIENQKGTFKLRIP
>NZ_CP042476.1|WP_146836129.1|2928613_2929306_-|hypothetical-protein
MKHQYLKILLLTFGIIPGGNITAQSSLQGNLRDWNNGDAVIAYFGMFNGEMTEIGSIKPDGTLHIPLDPDYAASFKKMAEKESAGAAEGWTMSYNTVSSVFPCMFEENIAFTNGDEIVTGLPEFLITDRSGETEHGYLYAVSSPEVAAWLDSYGETPVTKGYYLKWIYTDGPASATGECKMPTYTGNGEEMYDDTIIYDVQLEKGWNVLKYEIAEIFTSRPVNPIRPLHV
>NZ_CP042476.1|WP_168194596.1|2927645_2928470_-|DUF4412-domain-containing-protein
MKKAVLLGVLMMFITIPSQAQFLKNLQKKVEKRVENTVTNKVADKAAAEAGKSVDNMLNFQMANSGFATGFEQVDPSEIPEIYEFDWSYVVKMETRDGDMILNYFLKKDAPYFGFKLPDNDMFMVMDPSKKINVMYMRAEGNNMVMATRIPESNSAELAADKKQADEFSFKKIANKTIMGYDCSGYQGENKEMVFTFYVTREPDISFGDIYKSDKTNLPKGFDPQWIEDGNGIMMQMIMEGKKNAKENATLTCIALEKKPFNIKKSDYNSSAGN
>NZ_CP042476.1|WP_146836123.1|2925926_2926904_-|ribonucleoside-diphosphate-reductase
MAQTEPILQENKDRFVIFPIKHHDIWDWYKKMEASFWTAEEIDLHQDLNDWTNKLNADERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEKEKDQLFHAIETFPAIQKKAEWALKWIESDSFAERLIAFAAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNNHLINKVSKERIREIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVADRLLTELECEKEYGSSNPFDFMDMINLQGKTNFFEKRVGEYQKAGVMNKDKDTNKISFDADF
>NZ_CP042476.1|WP_146836107.1|2923325_2925767_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MYVLKRDGHKEPVMFDKITARIRKLCYGLNEIVDPLKVAMRVIEGLYDGVTTSELDNLAAEVSATMTTAHPDYARLAARISVSNLHKNTKKSFSEVMADLYEYVNPRTGKEAPLLSEEVYKVIQENKELLDSTIIYNRDFGYDYFGFKTLERSYLLKLNGKIAERPQHMLMRVSIGIHINDIDAAIETYELMSKKYFTHATPTLFNSGTPKPQMSSCFLLAMKDDSIDGIYDTLKQTAKISQSAGGIGLSIHNVRATGSYIGGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEQDSTWTLMCPNECPGLFDIHGEAFDELYHQYEAEGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQQNLGTIRSSNLCTEIMEFTSEDEVAVCNLASIALPMFIKGNEFDHKELFRITKRVTRNLNRVIDRNYYPVIEAENSNIRHRPVGLGVQGLADTFIKLRLPFTSDEAKKLNEEIFETLYFAAVTASMEMAKEEGPYSTFKGSPISKGQFQYNLWGLQDEELSGRWDWAKLRKDVMKHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVARDLWTEDVKDAILRANGSVQDIDIIPQDLKELYKTVWELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKKEEKKEPVPVFAAEPEVPTARAATPRMETEGNSLSPEELRAIIAQSKEAEGDDCLMCGS
>NZ_CP042476.1|WP_146836104.1|2922788_2923163_-|GxxExxY-protein
MENEISYKIRGAIFNVYKHFGPGLLESVYIAAFQADLQKEGLQVRKEVPVPVFYKNQKLEVGFRIDLLVNEKVIIEVKSVENIAEVHHKQVITYLKLTNLKLAILVNFNVENINSGIFRKVNGL
>NZ_CP042476.1|WP_146837674.1|2921382_2922726_-|dNTP-triphosphohydrolase
MNWEQLLSLKRYGDKNKRLRREQDETRLGFEVDYDRIIFSSAFRSLQDKTQVIPLSKTDFIHTRLTHSLEVSVVGRSLGRLAGQKILEKHPHLKTIHGYQMNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEYFSLGNGKRFKDQLTTQEFEDLTRFEGNANGFKILTENRPGVDGGIRLSYATLGAFIKYPKESLPHKPTRNIGDKKFGVFQTEKAIFEEIAAELGLLSVRNGEKVAFARHPLAFLVEAADDICYTIIDFEDGINLGLINEEYALEYLIKLVKNSINTSKYHSLTNTADRLSYLRALAINTLIKEAVELFLKNEEAILAGEFHESLFDKSSYEAQIKDIIKISVERIYQSEEVVHKEIAGYKMLSHLLDTYTRAFLPEEEMQNSNFNKLVRKSVPKLVINEEGSVYQILLQICSYTASLTDGITVSSFEKYKGLSL
>NZ_CP042476.1|WP_146837670.1|2920282_2921254_+|DUF3078-domain-containing-protein
MQASGLKMVRIDTTKTDTTEVKKDVLPDSIANEPQEVMIFWTKKNAVGVNFNEVAFINWNSGGNNSISALFHGNFERKYQKKLLSWKSNASMRYGLNAQEGRELRKSEDQIQVSSTFGYRRDSVSNFRYSAKFNFNTQFANGYRYPDTNRPISKFMAPGYVFLGIGTEYSHPKDDLTVYISPVTQKSTFVLDRVLSNEGMFGVTPAVKDEEGNILEEGERVRTEFGVLVTSGFTKEVFKNVNLDNQISLYSDYLNKFGNVDVDWQMNVNMVVNTFIKASIGSHLRYDDDVKVKEDINGDGNLETLGPKVQFKQMLGVGVVYEF
>NZ_CP042476.1|WP_146836101.1|2918417_2920193_+|1-deoxy-D-xylulose-5-phosphate-synthase
MAKSILQSINSPEDLRKLPQGKLAELAAELRKFIIEIVASKEGHLGASLGVVELTIALHYIFNTPEDLLVWDVGHQAYGHKILTGRRDSFHTNRQLHGLSGFPKRTESEYDTFGTGHSSTSISAALGMALASNLKGETGKHHIAVIGDASIASGMAFEGLNHAGVTNANLLVVLNDNAIGIDHSVGALKQYLTKARVGYKPAQNNIIEALNFKYYGPVDGHDIPELLQTFEELKNIEGPKFLHVITTKGKGLKKAEEDQVKYHAPGKFVPDTGELLPYETKGLPLKFQDVFGLTLVELARQNEKIIGITPAMPTGSSLKFMMDAFPERAFDVGIAEQHAVTLAAGMATRGFVVYCNIYSTFLQRAYDQVIHDVALQNLPVIFCLDRAGLVGEDGATHHGVFDIASLRCIPNLMIAAPANEVELRNLLFTVQSDLPGPIAIRYPRGRGTIPNWQQEFRKIEYGKGEKLSDGEEVAIISIGSISENVKNAVKISAEEGKVAHFDAKFVKPLDESLLHHIFDKFAKIVTVEDGVVTGGFGSAILEFAAKHRYPAIIECLGVPDAFIEQGSVDELYEIAKIDVHSIASTIKSLLE
>NZ_CP042476.1|WP_146837667.1|2917930_2918380_-|nucleoside-deaminase
MDLIFDDSYFMRKALQEAEAAFEKGEVPVGVVVVINNQVIARGHNLTELLRDVTAHAEMQAITAAANFLGGKYLKDCTMYVSLEPCQMCAGALYWSQLSRLVFAANDPERGYRKMGAKLHPKTKVTQGVLEEEASVLLKRFFIQKRNLN
>NZ_CP042476.1|WP_146836135.1|2930375_2930954_-|DUF3109-family-protein
MFQIGKTIVSEEIIKKDFVCNLSACKGACCIDGEAGAPVEEDEKKILEDIYPLVKPFLRPEGIAAIEAQGTWVIGEDGEPETPLINGADCAYVTFDKRGTALCGIEEAYNQGEITWKKPVSCHLYPVRVQDYSEFAAVNYHHWHICDDACSLGKELQVPVYKFVKQALVRKFGEDWYEELEKTALEIEAKKM
>NZ_CP042476.1|WP_146837677.1|2931100_2931673_+|NAAT-family-transporter
MLDFREIATASMILFAVIDIIGSIPIIIDLRKKAGHIQSEKATIVAGILMIVFLFVGKEILNLIGIDVNSFAVAGSFILFFLALEMILGITLYKDDAPETAAVVPLAFPLIAGAGTMTTLLSLRAEYEAINIVVAILLNIVVVYIVLKSSGKMERFLGKQGINVIRKIFGVILLAIAVKLFTSNIQSLFD
>NZ_CP042476.1|WP_146836138.1|2931702_2931900_+|hypothetical-protein
MKIFIYILMLLAVIVLGYNFTLLNFDNLLEKNSGIALIGILCAACVIVLLAILLTSKAIEKKADQ
>NZ_CP042476.1|WP_146836141.1|2931899_2932508_+|FAD-dependent-oxidoreductase
MDFDVLIIGGGAAGLSCALLLGSAKEKSYALNKNVGILLHQKASHLQSAIINNALGIPAGTSGGVILKEGAVQLKDLYPQVQQITGEKVKMISSAEGGFLITTNKNSYTAQKVVIAVGYSELLTIQDLEPYIIPHKKSPAHKNRIQLRNEDHLVKENMYVAGSLAGHRSQYAIACGSGACVATDILTSWNNGEHSVVHDKLK
>NZ_CP042476.1|WP_146836143.1|2932499_2932805_-|hypothetical-protein
MDAYNDYTAIFLLLSPLCFYIVAVSFRLMDNSALLFLQKEILVDSSNVSVKAIEEQIESSIDSKFKKQLKRALFFRKLHRIFIILMIACIPVTVITYFTLF
>NZ_CP042476.1|WP_146836146.1|2932820_2934407_-|PDZ-domain-containing-protein
MKENNKIYLPLLLGLVCAAGVLLGSKINFSSSQGLFSSNPKKEKLNRLIDYIDYEYVDYVNTDSIVDITVNRILENLDPHSVYIPSVEYASVTENMKGDFVGIGVSFQSVNDTVVVIQPIKGGPSEKIGIKGGDRILFANDAQLFDKNISNDSLIAQLKGEENTNVTLTVFRKGLKELLRFNIKRSRVPIKSVDAAYMLTNNLGYIKVNRFAESTYREFKESLEKLQQEGATQIAIDLRDNPGGYLSEAINIVDEFLKDGKLILYTKNKKGAMEETHSRRKGKFEDREVFVLINENSASASEIVAGAFQDNDRGTIIGRRSYGKGLVQREMELGDGSAVRLTIARYYTPTGRSIQKPYGEGNEAYFNDYTRRYKNGELRTADSIHVDDSLRYVTPGGKIVYGGGGIIPDIFVPKDTNFEKEHLTYILRSGHLSQFIFEVLEQDRNYYNSLSWDDFQKKEIITDALLANFQSYARRNNFPVKMNVYKPLVRRYLKAVMAQQLFGEDEFQRLINEDDRIIEKVIELSKTI
>NZ_CP042476.1|WP_146836149.1|2934390_2934840_-|dCMP-deaminase-family-protein
MQEKKQLKYDKAYLRIAREWGKLSHCRRRQVGALIVKGRMIISDGYNGTPTGFENFCEDEEGYTKWYVLHAEANAILKVAASTQSCQGATLYITMSPCRECSKLIHQAGITRIVYYTEYKDNSGLEFLAKAGIELHHVKELDEEIEREQ
>NZ_CP042476.1|WP_146836153.1|2934946_2935537_-|HupE/UreJ-family-protein
MSQFWLYFNLGLEHVLDWNAYDHILFLIVLVAAYSFSSWKRVLWLVTIFTLGHTLALFLSVYGVVSVSSRWVELLIAVTILITALYNIFTAKKKESQKNVGLLYFATAFFGIIHGLGFSTYFKMIASGTESKFLPLLEFALGIEAAQVIIVLGVMILGFIFQNFFRVNRRDWILILSAIVIGIILPILRENFQAFL
>NZ_CP042476.1|WP_146836156.1|2935961_2936705_+|sterol-desaturase-family-protein
MILQSNTPGIFLVYILIFFLALLFRYFVAAGVFYWYYYKLRAQRYSSKRLSKRKHRKGQIKKEIVYSIKSSVIFAAVGAGTYWLYQQGVTAIYIEPSQWGYWYLPLSLLLVFLIHETYYYWVHRAMHHPKIFKYVHKVHHDSLTPTPWTAFSFHPWESIIEALILPIILIFLPVNIYVLGFYLLFMTLSSVINHLDIEIYPPKFLNSGVGKQFIGATHHHHHHTEFNTNYGLYFNFWDRWMGTESNR
>NZ_CP042476.1|WP_146836159.1|2937016_2937496_+|DUF4440-domain-containing-protein
MKTFNLIPLMAFVFLMGACGEKREPEAPEAVAESPQEFQDPNDAMSSWHNAWNSRDPKQIQGLAASDAVLVLNGREVPADSLAGFYQEAGSVMKDLELRSLKKGSTDHLAYDTGLFTHSYTTDTTKYRGSYTFVWERTDEDNEWKVKAMNISDTRNYQE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1419441 : 1467747

Leptospira_phage(18.18%)

transposase,protease,tail,integrase

attL 1432827:1432842|attR 1462818:1462833

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_146832351.1\|1419441_1419882_-\|tail	phage tail protein	A0A059XP41	uncultured_phage	3.5e-16	39.8
WP_146831006.1\|1420109_1421075_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_146832354.1\|1421146_1421527_-	hypothetical protein	NA	NA	NA	NA
WP_146832357.1\|1421743_1422355_-	hypothetical protein	NA	NA	NA	NA
WP_146832360.1\|1422602_1423730_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.0e-31	31.9
WP_146832363.1\|1423827_1424208_+	hypothetical protein	NA	NA	NA	NA
WP_146832366.1\|1425194_1426451_-	alginate export family protein	NA	NA	NA	NA
WP_168194567.1\|1426541_1427444_-	diacylglycerol kinase	NA	NA	NA	NA
WP_146832372.1\|1427653_1428382_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.9e-30	35.9
WP_146832374.1\|1428579_1429776_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_146832377.1\|1429969_1432450_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_146832380.1\|1432512_1433619_+	PepSY domain-containing protein	NA	NA	NA	NA
1432827:1432842	attL	NA	NA	NA	NA
WP_146832383.1\|1433777_1434140_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	1.3e-08	32.7
WP_168194568.1\|1434144_1435368_+	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_146832389.1\|1435367_1436354_+	hypothetical protein	NA	NA	NA	NA
WP_146832392.1\|1436500_1437964_+	glycosyltransferase	NA	NA	NA	NA
WP_146832395.1\|1438024_1438570_-	NlpC/P60 family protein	A0A1J0GW44	Streptomyces_phage	4.0e-09	36.7
WP_146832397.1\|1438871_1444811_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	3.3e-32	39.4
WP_146832400.1\|1445297_1445675_+	response regulator	NA	NA	NA	NA
WP_146832403.1\|1446112_1446361_+	hypothetical protein	NA	NA	NA	NA
WP_146832406.1\|1447589_1448096_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_146832409.1\|1448519_1449530_-	hypothetical protein	NA	NA	NA	NA
WP_146832412.1\|1450125_1451370_-\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	1.9e-30	37.3
WP_146832415.1\|1452056_1453190_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_146832418.1\|1453186_1453636_+	c-type cytochrome	NA	NA	NA	NA
WP_146832420.1\|1453784_1454393_+	uridine kinase	A0A2K9L178	Tupanvirus	3.2e-36	43.3
WP_146832423.1\|1454474_1454789_+	septum formation initiator family protein	NA	NA	NA	NA
WP_146832426.1\|1454828_1456205_+	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_146832429.1\|1456264_1458394_+	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_146832432.1\|1458658_1459540_+	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.6e-47	41.1
WP_146832435.1\|1459805_1460570_+	AAA family ATPase	Q8JL10	Natrialba_phage	2.2e-21	29.3
WP_146832438.1\|1460573_1461476_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	7.2e-16	39.3
WP_146837497.1\|1461519_1462062_+	hypothetical protein	NA	NA	NA	NA
WP_146832441.1\|1462125_1462830_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_146832444.1\|1462884_1464447_+	signal peptidase I	NA	NA	NA	NA
1462818:1462833	attR	NA	NA	NA	NA
WP_146832447.1\|1464459_1465077_+	WbqC family protein	NA	NA	NA	NA
WP_146832450.1\|1465081_1466104_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_146832453.1\|1466104_1467004_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_146832456.1\|1467003_1467747_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

2631097 : 2639701

Ralstonia_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139066275.1\|2631097_2631331_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.7e-06	38.1
WP_146835398.1\|2631477_2632074_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.4e-20	34.4
WP_146835401.1\|2632070_2632538_+	ribonuclease HI	J9Q745	Salmonella_phage	5.8e-25	40.8
WP_146835403.1\|2632629_2633568_+	sugar kinase	NA	NA	NA	NA
WP_146835406.1\|2633631_2635530_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.0e-15	25.3
WP_146835409.1\|2635789_2636398_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	4.2e-60	55.7
WP_146835413.1\|2636569_2639701_+	UvrD-helicase domain-containing protein	A0A068EQC7	Bacillus_phage	8.4e-11	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042476

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection