CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041648	Klebsiella pneumoniae strain NKU_KlebA1 plasmid pKlebA1, complete sequence	0 crisprs	csa3	0	0	2	0
NZ_CP041649	Klebsiella pneumoniae strain NKU_KlebA1 chromosome, complete genome	3 crisprs	DEDDh,RT,cas3,csa3,DinG	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7010 : 74735

Escherichia_phage(25.93%)

transposase,integrase

attL 11352:11411|attR 64280:64938

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067858.1\|7010_7715_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_074150773.1\|7750_8095_+	resolvase	A0A219YB42	Aeromonas_phage	9.8e-14	44.6
WP_001516695.1\|8413_9070_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001067855.1\|11241_11946_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
11352:11411	attL	NA	NA	NA	NA
WP_001330846.1\|12681_12927_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|12932_13124_+	hypothetical protein	NA	NA	NA	NA
WP_000587837.1\|13605_14148_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|14160_15021_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067858.1\|15731_16436_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_074150773.1\|16471_16816_+	resolvase	A0A219YB42	Aeromonas_phage	9.8e-14	44.6
WP_001516695.1\|17134_17791_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001143760.1\|19243_22249_-\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
WP_001235713.1\|22412_22970_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|23152_24013_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_025714822.1\|24253_24970_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000677445.1\|25004_25640_-	type 3 fimbria minor subunit MrkF	NA	NA	NA	NA
WP_124053727.1\|26638_29125_-	type 3 fimbria usher protein MrkC	NA	NA	NA	NA
WP_143928310.1\|29932_30541_-	type 3 fimbria major subunit MrkA	NA	NA	NA	NA
WP_040120302.1\|30881_31805_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	7.1e-176	98.7
WP_071885288.1\|32059_32488_+	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_116967863.1\|34282_35116_-	oxidoreductase	NA	NA	NA	NA
WP_012540028.1\|35220_36141_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_116967864.1\|36436_37870_-	trehalose-6-phosphate synthase	NA	NA	NA	NA
WP_130951664.1\|39625_39955_+	hypothetical protein	NA	NA	NA	NA
WP_116967867.1\|40168_40258_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_116967868.1\|40257_41943_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_116967869.1\|41961_44004_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	3.9e-33	26.6
WP_116967870.1\|44014_44590_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_116967871.1\|44599_47302_+	two-component system sensor histidine kinase KdbD	W8CYF6	Bacillus_phage	1.2e-16	25.4
WP_116967872.1\|47298_47967_+	two-component system response regulator KdpE	W8CYM9	Bacillus_phage	4.4e-26	31.3
WP_117030206.1\|48447_48660_+	hypothetical protein	NA	NA	NA	NA
WP_029497506.1\|48779_48968_+	hypothetical protein	NA	NA	NA	NA
WP_032409241.1\|48964_49222_-	hypothetical protein	NA	NA	NA	NA
WP_009309890.1\|49273_50131_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_012539968.1\|50123_50195_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_009309889.1\|50423_50675_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_048338015.1\|50811_51291_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	3.1e-18	34.0
WP_048338014.1\|51274_54229_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	62.6
WP_000427623.1\|54493_55498_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_003100847.1\|55576_56134_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2
WP_003100853.1\|56127_56499_-	hypothetical protein	NA	NA	NA	NA
WP_003100856.1\|56495_56996_-	hypothetical protein	NA	NA	NA	NA
WP_003100858.1\|56992_57319_-	hypothetical protein	NA	NA	NA	NA
WP_000215515.1\|57573_57930_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|58263_58968_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001389365.1\|59141_59906_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001297012.1\|59993_60107_+	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|60412_60913_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|61039_61879_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001261740.1\|62382_63174_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_015057121.1\|63319_64279_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
WP_001067855.1\|64169_64874_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004118534.1\|65629_66004_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
64280:64938	attR	NA	NA	NA	NA
WP_001549953.1\|66532_67729_+	MFS transporter	NA	NA	NA	NA
WP_004118529.1\|67800_68628_-	universal stress protein	NA	NA	NA	NA
WP_001549885.1\|68646_70125_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
WP_001549886.1\|70608_70962_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
WP_001549887.1\|71057_72341_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
WP_001549888.1\|72390_72819_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
WP_004118521.1\|72876_73599_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
WP_001549890.1\|73595_73928_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_009309887.1\|74423_74735_-	hypothetical protein	K7PKY8	Enterobacterial_phage	2.1e-15	40.0

DBSCAN-SWA_2

133314 : 141256

Escherichia_phage(50.0%)

integrase

attL 136793:136806|attR 141728:141741

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032425559.1\|133314_134286_-	StbA family protein	A0A222YXF2	Escherichia_phage	1.4e-73	46.8
WP_001568036.1\|134519_134951_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_101978616.1\|136302_137280_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.5
136793:136806	attL	NA	NA	NA	NA
WP_011977818.1\|137276_138482_-	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_151362723.1\|138526_138760_+	hypothetical protein	NA	NA	NA	NA
WP_001568031.1\|139183_139939_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	2.0e-136	96.0
WP_020277927.1\|140473_141256_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.9e-52	89.5
141728:141741	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041649

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041649_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041649_1

614874-615274

Orphan

Consensus_repeat	Method
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP041649_1

>merge|NZ_CP041649|1|614874-615274|PILER-CR
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGGGAACGCGGCCTGAACACCTTGCCGGGCGGCGCTTGCCCGGCCTACTGAGCTTGCACTGGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGGGTACGCGGCCTGAACACCTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTACTGAGCTTGCACCGGCCTGCCGTACCCCAGGCCCGGTAAGGCGTAGCCGCCACCGGGCATCAGGCCGGGAACGCGGCCTGAACTCTTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTGCTGAGCTTGCACCGGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGG

>NZ_CP041649|1|1|614874-615274|PILER-CR
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGG	GAACGCGGCCTGAACACCTTGCCGGGCGGCGCTTGCCCGGCCTACTGAGCTTGCACT
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGG	GTACGCGGCCTGAACACCTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTACTGAGCTTGCACC
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGTAGCCGCCACCGGGCATCAGGCCGG	GAACGCGGCCTGAACTCTTTGCCGGGCGGCGCGGCGCTTGCCCGGCCTGCTGAGCTTGCACC
GGCCTGCCGTACCCCAGGCCCGGTAAGGCGCAGCCGCCACCGGGCATCAGGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041649.1\|WP_004176916.1\|612464_613640_-\|isochorismate-synthase-EntC	unknown	unknown	gnl\|CDD\|184977
NZ_CP041649.1\|WP_040169716.1\|628142_629078_-\|transketolase	unknown	unknown	gnl\|CDD\|226467
NZ_CP041649.1\|WP_064171904.1\|609982_610834_-\|isochorismatase	unknown	unknown	gnl\|CDD\|224452
NZ_CP041649.1\|WP_004176919.1\|623487_623691_-\|MbtH-family-NRPS-accessory-protein	unknown	unknown	gnl\|CDD\|225790
NZ_CP041649.1\|WP_020801568.1\|606352_608458_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP041649.1\|WP_004176910.1\|605375_605675_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP041649.1\|WP_004147526.1\|613828_614788_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NZ_CP041649.1\|WP_004176911.1\|605649_606054_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP041649.1\|WP_002893603.1\|629070_629901_-\|transketolase	unknown	unknown	gnl\|CDD\|226468
NZ_CP041649.1\|WP_004176917.1\|616744_617752_+\|Fe(3+)-siderophore-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NZ_CP041649.1\|WP_019705367.1\|609227_609983_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
NZ_CP041649.1\|WP_064171903.1\|610847_612455_-\|(2,3-dihydroxybenzoyl)adenylate-synthase	unknown	unknown	gnl\|CDD\|236803
NZ_CP041649.1\|WP_073984471.1\|617751_618741_+\|iron-enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182463
NZ_CP041649.1\|WP_023312831.1\|623718_624927_-\|enterochelin-esterase	unknown	unknown	gnl\|CDD\|236695
NZ_CP041649.1\|WP_002893602.1\|630275_631226_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP041649.1\|WP_002893892.1\|608813_609227_-\|proofreading-thioesterase-EntH	unknown	unknown	gnl\|CDD\|182337
NZ_CP041649.1\|WP_064171902.1\|618737_619532_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182336
NZ_CP041649.1\|WP_002893903.1\|606050_606248_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP041649.1\|WP_004147525.1\|615390_616632_-\|enterobactin-transporter-EntS	unknown	unknown	gnl\|CDD\|236700
NZ_CP041649.1\|WP_143928209.1\|633254_634190_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380622

Protein	Function_ID	Function_description	E-value
NZ_CP041649.1\|WP_004176916.1\|612464_613640_-\|isochorismate-synthase-EntC	gnl\|CDD\|184977	PRK15016, PRK15016, isochorismate synthase EntC; Provisional.	0
NZ_CP041649.1\|WP_040169716.1\|628142_629078_-\|transketolase	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	7.1654e-125
NZ_CP041649.1\|WP_064171904.1\|609982_610834_-\|isochorismatase	gnl\|CDD\|224452	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism].	1.22105e-133
NZ_CP041649.1\|WP_004176919.1\|623487_623691_-\|MbtH-family-NRPS-accessory-protein	gnl\|CDD\|225790	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown].	1.17733e-26
NZ_CP041649.1\|WP_020801568.1\|606352_608458_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP041649.1\|WP_004176910.1\|605375_605675_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	7.77376e-11
NZ_CP041649.1\|WP_004147526.1\|613828_614788_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	0
NZ_CP041649.1\|WP_004176911.1\|605649_606054_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.02862e-10
NZ_CP041649.1\|WP_002893603.1\|629070_629901_-\|transketolase	gnl\|CDD\|226468	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	3.98979e-121
NZ_CP041649.1\|WP_004176917.1\|616744_617752_+\|Fe(3+)-siderophore-ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	7.70364e-177
NZ_CP041649.1\|WP_019705367.1\|609227_609983_-\|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	4.18475e-170
NZ_CP041649.1\|WP_064171903.1\|610847_612455_-\|(2,3-dihydroxybenzoyl)adenylate-synthase	gnl\|CDD\|236803	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase.	0
NZ_CP041649.1\|WP_073984471.1\|617751_618741_+\|iron-enterobactin-ABC-transporter-permease	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	0
NZ_CP041649.1\|WP_023312831.1\|623718_624927_-\|enterochelin-esterase	gnl\|CDD\|236695	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional.	0
NZ_CP041649.1\|WP_002893602.1\|630275_631226_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	6.79138e-99
NZ_CP041649.1\|WP_002893892.1\|608813_609227_-\|proofreading-thioesterase-EntH	gnl\|CDD\|182337	PRK10254, PRK10254, proofreading thioesterase EntH.	1.12261e-90
NZ_CP041649.1\|WP_064171902.1\|618737_619532_+\|iron-enterobactin-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182336	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein.	0
NZ_CP041649.1\|WP_002893903.1\|606050_606248_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP041649.1\|WP_004147525.1\|615390_616632_-\|enterobactin-transporter-EntS	gnl\|CDD\|236700	PRK10489, PRK10489, enterobactin transporter EntS.	0
NZ_CP041649.1\|WP_143928209.1\|633254_634190_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380622	cd19967, PBP1_TmRBP-like, D-ribose ABC transporter substrate-binding protein such as Thermoanaerobacter tengcongensis ribose binding protein (ttRBP). Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type 1 periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.	1.19278e-122

>NZ_CP041649.1|WP_004147526.1|613828_614788_+|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MNFFSFCRRGALTGMLLLLGITSAQAADWPRQVTDSYGTHTLPSQPLRIVSTSVTLTGSLLAIDAPVVASGATTPNNRVADSQGFLRQWSEVAKARKLARLYIGEPSAEAVAAQMPDLILVSATGGDSALPLYDQLKTIAPTLVINYDDKSWQTLLTQLGQITGHEQQASARIADFNKQLVSLKEKMKLPPQPVTALVYTAAAHSANIWTPESAQGQMLEQLGFSLATLPGGLPASHSQGKRHDIVQLGGENLAAGLNGQSLFLFAGDQKDADAIYANPLLAHLPAVAGKRVYPLGTETFRLDYYSALLVLQRLSSLFG
>NZ_CP041649.1|WP_004176916.1|612464_613640_-|isochorismate-synthase-EntC
METSLAEDVKKPTRTLSPDSFFFMSPYRSFTTSGCFRRFSQPAVGGDALNGEFQQQMAAAFAEARAAGIRKPVMVGAIPFDTCQPSELYIPERWEAFSRPEKQRSARYAAPLEAMEVVERREIPEQDAFLAMVERAAALTATPEVDKVVLSRLIDITTRDRVDSGALMERLIAQNPASFNFHVPLSDGGVLLGASPELLLRKEGQHFSSLPLAGSARRQPDDVLDREAGNRLLASGKDRHEHELVTQAMKSVLGPRSSQLSLPESPQLITTPTLWHLATPIAGTALAEENAMSLACLLHPTPALSGFPHQAAKRLIAELEPFDRQLFGGIVGWCDDEGNGEWVVTIRCARLQQRTLRLFAGAGIVPASSPLGEWRETGVKLTTMLNVFGLN
>NZ_CP041649.1|WP_064171903.1|610847_612455_-|(2,3-dihydroxybenzoyl)adenylate-synthase
MIAFTRWPEEFAARYRQKGYWQDLPLTNLITRHAENDAVAIIDGERQISYRQFNQLVDNLACSLQRQGLKRGETALVQLGNVAEFYMTFFALLRIGVAPVNALFSHQRSELNAYAAQIKPALLIADREHALFADDSFLHAFIAEHPSLRVALLRNDGGERDLATEINRPADNFIANPTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSIRRSNEICGINAETRYLNALPAAHNYAMSSPGSLGVFLAGGRVILAADPSATLCFPLIEQHQINVASLVPPAVSLWLQAIHEWGSNAQLQSLQLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLNDSPQRIINTQGCPMCPDDEVWVADADGNPLPRGEVGRLMTRGPYTFRGYYNSPQHNAEAFDADGFYCSGDLISIDEDGYITVQGREKDQINRGGEKIAAEEIENLLLRHEAVIHAALVSIEDNLLGEKSCAYLVVTSPLRAVAVRRFLREQGVAEFKLPDRVECVAALPLTPVGKVDKKQLRQWLAEGKLG
>NZ_CP041649.1|WP_064171904.1|609982_610834_-|isochorismatase
MAIPKLQTYALPEASDIPANKVNWAFEPSRAALLIHDMQEYFLNFWGENSAMMEKVVANIAALRDFCKQNGIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQQVIAALAPDEDDTVLVKWRYSAFHRSPLEEMLKETGRDQLIITGVYAHIGCMTTATDAFMRDIKPFFVADALADFSREEHLMALKYVAGRSGRVVMTEELLPLPASKAALRALILPLLDESDEPLDDENLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWALLTREVH
>NZ_CP041649.1|WP_019705367.1|609227_609983_-|2,3-dihydro-2,3-dihydroxybenzoate-dehydrogenase
MAALDFRGQTVWVTGAGKGIGYATALAFVEAGANVTGFDLAFDGESYPFATETLDVADADQVRDLCARLLNNIERLDVLVNAAGILRMGATDQLSAEDWQQTFAVNVGGAFNLFQQTMAQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGSGVRCNLVSPGSTDTDMQRTLWVSDDAEQQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASSHASHITLQDIVVDGGSTLGA
>NZ_CP041649.1|WP_002893892.1|608813_609227_-|proofreading-thioesterase-EntH
MAWKRELTLAALNASSENTMVAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCVVGTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYDEKGRRCCTCRLGTAVLG
>NZ_CP041649.1|WP_020801568.1|606352_608458_-|carbon-starvation-protein-CstA
MNNSGKYLIWALLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANESQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYEPMPENLDAIETQAKGAH
>NZ_CP041649.1|WP_002893903.1|606050_606248_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP041649.1|WP_004176911.1|605649_606054_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDESDWEDIPYESDIYDDVMLPGEVCDVMHKENVSLQAAWRILRGMSQQEVAEKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP041649.1|WP_004176910.1|605375_605675_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKQFSKIDTRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTYLHEEHTEYDYSVHQG
>NZ_CP041649.1|WP_004147525.1|615390_616632_-|enterobactin-transporter-EntS
MNRQSWLLNLSLLKTHPAFRAVFIARFISILSLGLLGVAIPVQIQMMTHSTWQVGLSVTLTGASMFVGLMVGGVLADRYERKRLILLARGTCGVGFVGLCLNALLPEPSLAAIYLLGIWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNFGLAAAGTFITTLTLLRLPQLPPPPQPREHPLRSLLAGLTFLCRSPLIGGIALLGGLLTMASAVRVLYPALAGSWQMSAGQIGLLYAAIPLGAALGALTSGQLAQTVRPGALMLATTVGSFVAIALFSLMPHWALGALCLALFGWLSAISSLLQYTLIQTQTPEHMLGRINGLWTAQNVTGDAIGAALLGGLGAVMTPAASASASGWALALVGVLLVGLLRELRRFQRPEIVNES
>NZ_CP041649.1|WP_004176917.1|616744_617752_+|Fe(3+)-siderophore-ABC-transporter-permease
MSFSTTAVRSVAVPGLLLLLALAAALSLTIGAKSLPIGTVFTAFSGTCQSADCTIVLDARLPRTLAGLLAGVALGLAGALMQTLTRNPLADPGLLGVNSGASFAIVLGAALFGITSPQEQLLLAFCGALCASLLVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLSNGIALLNPDVYDQLRFWQAGSLDIRTLQTLKIVLLPVVVAGIAALLLSRALNSLSLGNDTATALGSRVARTQLIGLIVITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADVIGRLLVPGELRVSVVSAFLGAPVLIWLVRRQPRGGGL
>NZ_CP041649.1|WP_073984471.1|617751_618741_+|iron-enterobactin-ABC-transporter-permease
MAPSRRLIASCLLLMAASLLISLLGLAQGPVPLTIDQVFSALFGDAPRNVAMVVNEWRLPRVLMALLIGAALGVSGAIFQSLTRNPLGSPDVMGFNTGAWSGVLVAMVLFGQNLTAIALAAMAGGVLTSLVVWLLAWRNGIETFRLIIIGIGVRAMLVAFNTWLLLRASLETALSAGLWNAGSLNGLTWGKTWPSAPLILLMLVGSALLVRRMRLLEMGDDTACALGVQVERSRLLLMLVAVVLTAASTALAGPISFIALVAPHIARRLSGTARWGLTQSALCGALLLALADYGAQRLFMPWQLPVGVLTVSLGGIYLIALLIQESRKK
>NZ_CP041649.1|WP_064171902.1|618737_619532_+|iron-enterobactin-ABC-transporter-ATP-binding-protein
MSAVSSRLRGEQLTLAYGNKTIAESLNVTIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWLDGAQIQQYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVNKAMRATGISDLALQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYATHLIALRDGRIVAEGAPKEIVTADLIERIYGLRCTIIEDPVAHTPLVVPLGRR
>NZ_CP041649.1|WP_004176919.1|623487_623691_-|MbtH-family-NRPS-accessory-protein
MQFSNPFDNPQGQFYILRNDQQQYSLWPAHCDLPAGWTVVCPPQSAEACNAWLAANWSTLTPAHHAS
>NZ_CP041649.1|WP_023312831.1|623718_624927_-|enterochelin-esterase
MLRTGSEEWWQTLRGPQCRAVDDAIEVTFWWRDPAGDETRSPHRRVWLYITGVTDHHQNARPQSLQRLPGTDAWFWRTTLSPTWRGSYCFIPSDRDDDFSPEVFSADAPDRALLREGWRKLLPRAIADPLNPHSWLGGRGHGVSALEMPQAPAQPGWDPLNEAHPAARCLEWRSARLGNHRRVWIYTTGEAVDPQTRPLAILLDGQFWAESMPVWSPLAALTREGRLPPAVYLLIDAIDNQRRGVELPCHRDFWLAVQEELLPLVHGYAPFSDRPDRTVVAGQSFGGLAAMFAALNWPQRFGCVLSQSGSYWWPHRDGRGTGFIGEQLRQGEVSAAGLRVWLEAGQREPIIFRANQALLAQLTTTQQTIFWRQVDGGHDALCWRGGLTAGLIQLWQPLLSHP
>NZ_CP041649.1|WP_040169716.1|628142_629078_-|transketolase
MSNAEHLANVMVEAFIAAVERGVDLVPVVADSTSTAKIAPFIKQFPGRLVNVGIAEQSMVGTAAGLALGGKVAVTCNAAPFLISRANEQIKVDVCYNNTNVKLFGLNAGASYGPLASTHHAIDDLAVMRGFGNIQIFAPSSPRECRQIIDYAIGYQGPVYIRLDGKALPELLDESYRFVPGAVLTLREGEDVALVATGSTVHEVVEAAQQLADLGIQAKVVSVPSIRPCDTAALLAALQPCGSVITVEEHNVNGGLGSLVAEVLAEAGVGIALQRLGIPDGEYAAAADRGWMRQYHGFDAAAIVALVQKRD
>NZ_CP041649.1|WP_002893603.1|629070_629901_-|transketolase
MNPYRYDIQTLERKARAVRRHIVRLNANSPAGGHTGADLSQVELLTALYFRVLNVAPDRLDDPQRDIYIQSKGHAVGCYYCVLAEAGFFPVEWLETYQHANSHLPGHPVRQKTPGIELNTGALGHGLPVAVGLALAAKKSNSTRRIFLITGDGELAEGSNWEAALAAAHYGLDNLVIINDKNNLQLAGPTREIMNTDPLADKWRAFGMEVSECQGNDMASVVSVIEGLKQEGKPNVIIANTTKGAGISFIQGRPEWHHRVPKGEEIALALEELKDE
>NZ_CP041649.1|WP_002893602.1|630275_631226_+|sugar-binding-transcriptional-regulator
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSNIFLKLEKGLEDRYGLKQAVVVDTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQTLAQRLNCDAWLLPSQSIEGSMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGAVGDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYIDVLITDYPTARMLVSD
>NZ_CP041649.1|WP_143928209.1|633254_634190_+|substrate-binding-domain-containing-protein
MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAVEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGSEVANVFVEKMAEKGKYAELTCNLADNNCVTRSKSFHQVIDQYPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKGVICGNGPVALGAIAALKTANRSDVIVVGIDGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQDNADKVQDFNIKS

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Crispr_ID: NZ_CP041649_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041649_2

1260801-1260895

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041649_2

>merge|NZ_CP041649|2|1260801-1260895|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP041649|2|1|1260801-1260895|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041649.1\|WP_002888353.1\|1251560_1252256_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP041649.1\|WP_002888345.1\|1259347_1260712_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP041649.1\|WP_004145992.1\|1272093_1273959_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP041649.1\|WP_004178574.1\|1254975_1257882_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP041649.1\|WP_002888329.1\|1266856_1268143_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP041649.1\|WP_002888321.1\|1270339_1271188_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP041649.1\|WP_002888320.1\|1271440_1271920_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP041649.1\|WP_004177424.1\|1249920_1251423_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP041649.1\|WP_004145972.1\|1247018_1247864_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP041649.1\|WP_002888347.1\|1258628_1259168_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP041649.1\|WP_002888324.1\|1269133_1269955_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP041649.1\|WP_004145970.1\|1245435_1246137_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP041649.1\|WP_002888332.1\|1263382_1264210_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP041649.1\|WP_004145980.1\|1257894_1258554_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP041649.1\|WP_023342998.1\|1248200_1249910_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP041649.1\|WP_004178576.1\|1252430_1254788_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP041649.1\|WP_004147026.1\|1264453_1266802_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP041649.1\|WP_065519585.1\|1262651_1263350_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP041649.1\|WP_002888323.1\|1269957_1270335_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP041649.1\|WP_002888340.1\|1261036_1262662_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
NZ_CP041649.1\|WP_002888353.1\|1251560_1252256_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP041649.1\|WP_002888345.1\|1259347_1260712_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP041649.1\|WP_004145992.1\|1272093_1273959_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP041649.1\|WP_004178574.1\|1254975_1257882_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP041649.1\|WP_002888329.1\|1266856_1268143_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP041649.1\|WP_002888321.1\|1270339_1271188_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP041649.1\|WP_002888320.1\|1271440_1271920_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP041649.1\|WP_004177424.1\|1249920_1251423_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP041649.1\|WP_004145972.1\|1247018_1247864_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP041649.1\|WP_002888347.1\|1258628_1259168_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP041649.1\|WP_002888324.1\|1269133_1269955_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP041649.1\|WP_004145970.1\|1245435_1246137_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	2.22623e-160
NZ_CP041649.1\|WP_002888332.1\|1263382_1264210_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP041649.1\|WP_004145980.1\|1257894_1258554_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
NZ_CP041649.1\|WP_023342998.1\|1248200_1249910_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP041649.1\|WP_004178576.1\|1252430_1254788_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP041649.1\|WP_004147026.1\|1264453_1266802_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP041649.1\|WP_065519585.1\|1262651_1263350_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.21817e-66
NZ_CP041649.1\|WP_002888323.1\|1269957_1270335_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP041649.1\|WP_002888340.1\|1261036_1262662_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173

>NZ_CP041649.1|WP_002888345.1|1259347_1260712_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP041649.1|WP_002888347.1|1258628_1259168_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP041649.1|WP_004145980.1|1257894_1258554_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP041649.1|WP_004178574.1|1254975_1257882_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP041649.1|WP_004178576.1|1252430_1254788_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP041649.1|WP_002888353.1|1251560_1252256_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP041649.1|WP_004177424.1|1249920_1251423_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP041649.1|WP_023342998.1|1248200_1249910_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NZ_CP041649.1|WP_004145972.1|1247018_1247864_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP041649.1|WP_004145970.1|1245435_1246137_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLNDVTWLYQHLPMRFTLDVARGERIAVLGPSGAGKSTLLNLIAGFLPPASGSLLINGEAHNATPPAQRPVSMLFQENNLFNHLTIRQNISLGIHPGLKLSREQQAQVTAIAGQMGIDALLERLPGELSGGQRQRAALARCLVRQQPVLLLDEPFSALDPALRQEMLSLVADVCEQQQLTLLMVSHSVEDAARIAPRSMVVAEGRIVWDGATAELLSGHSSASHLMGISAR
>NZ_CP041649.1|WP_002888340.1|1261036_1262662_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP041649.1|WP_065519585.1|1262651_1263350_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGIAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP041649.1|WP_002888332.1|1263382_1264210_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP041649.1|WP_004147026.1|1264453_1266802_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP041649.1|WP_002888329.1|1266856_1268143_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP041649.1|WP_002888324.1|1269133_1269955_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP041649.1|WP_002888323.1|1269957_1270335_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP041649.1|WP_002888321.1|1270339_1271188_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP041649.1|WP_002888320.1|1271440_1271920_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP041649.1|WP_004145992.1|1272093_1273959_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGAAALIVPIAVRLGLGSVLGYLIAGCIIGPWALRLVTDAEAILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVACGVLIGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQMGRSAFAVLLFQDIAAIPLVAMIPLLAASGGATSLMAFALSALKVAAALALVVVLGRYLTRPLLRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLVTHPLRIVILLVGFLAIKMLMLWLIARPLGVPRAQRRWFAVLLGQGSEFAFVVFGAARMADVLDGEWAKALTLAVALSMAATPILLVLLTRLEKSSSGQARDADEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVILDHDPDHVDTLRKFDMKVFYGDATRVDLLESAGAEKAEVLINAIDDPHVSLELVARVKEHFPHLQIISRARDVDHYIQLRQAGVEAPERETFEAALKSGRMTLEALGLGAYEARERADLFRRFNLQMVEEMVAMAENDAASRVAVFKRTSDMLTGIINEDRHHLSLVQRHGWQGTEEGRHTGDIADEPENKPSA

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Crispr_ID: NZ_CP041649_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041649_3

4095118-4095213

Orphan

Consensus_repeat	Method
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041649_3

>merge|NZ_CP041649|3|4095118-4095213|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>NZ_CP041649|3|2|4095118-4095213|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTA
GCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041649.1\|WP_002910201.1\|4081037_4082420_+\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_CP041649.1\|WP_002910097.1\|4102548_4105224_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP041649.1\|WP_004200278.1\|4083077_4084856_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_CP041649.1\|WP_002910089.1\|4108804_4109725_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886
NZ_CP041649.1\|WP_002910193.1\|4090699_4092235_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP041649.1\|WP_023285281.1\|4094616_4095060_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP041649.1\|WP_087866525.1\|4082416_4083067_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP041649.1\|WP_002910109.1\|4097021_4097480_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_CP041649.1\|WP_002910189.1\|4092941_4093619_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_CP041649.1\|WP_002910105.1\|4099793_4100696_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP041649.1\|WP_023285280.1\|4096136_4096979_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP041649.1\|WP_032103886.1\|4105301_4105487_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041649.1\|WP_002910083.1\|4111666_4112671_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|185037
NZ_CP041649.1\|WP_004189443.1\|4086959_4090703_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP041649.1\|WP_004148754.1\|4107084_4108719_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_CP041649.1\|WP_023285283.1\|4092231_4092942_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_CP041649.1\|WP_004175568.1\|4085165_4086554_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP041649.1\|WP_002910095.1\|4105700_4106348_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NZ_CP041649.1\|WP_065519739.1\|4078285_4080886_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|239155
NZ_CP041649.1\|WP_002910103.1\|4100817_4101225_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858

Protein	Function_ID	Function_description	E-value
NZ_CP041649.1\|WP_002910201.1\|4081037_4082420_+\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_CP041649.1\|WP_002910097.1\|4102548_4105224_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP041649.1\|WP_004200278.1\|4083077_4084856_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_CP041649.1\|WP_002910089.1\|4108804_4109725_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0
NZ_CP041649.1\|WP_002910193.1\|4090699_4092235_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP041649.1\|WP_023285281.1\|4094616_4095060_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	3.3483e-32
NZ_CP041649.1\|WP_087866525.1\|4082416_4083067_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	3.35453e-140
NZ_CP041649.1\|WP_002910109.1\|4097021_4097480_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107
NZ_CP041649.1\|WP_002910189.1\|4092941_4093619_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
NZ_CP041649.1\|WP_002910105.1\|4099793_4100696_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP041649.1\|WP_023285280.1\|4096136_4096979_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	3.45244e-176
NZ_CP041649.1\|WP_004148754.1\|4107084_4108719_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP041649.1\|WP_002910083.1\|4111666_4112671_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	0
NZ_CP041649.1\|WP_004189443.1\|4086959_4090703_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP041649.1\|WP_023285283.1\|4092231_4092942_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	6.07993e-84
NZ_CP041649.1\|WP_004175568.1\|4085165_4086554_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP041649.1\|WP_002910095.1\|4105700_4106348_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
NZ_CP041649.1\|WP_065519739.1\|4078285_4080886_+\|nitrate-reductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP041649.1\|WP_002910103.1\|4100817_4101225_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79

>NZ_CP041649.1|WP_023285281.1|4094616_4095060_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPV
>NZ_CP041649.1|WP_002910189.1|4092941_4093619_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>NZ_CP041649.1|WP_023285283.1|4092231_4092942_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYVVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>NZ_CP041649.1|WP_002910193.1|4090699_4092235_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>NZ_CP041649.1|WP_004189443.1|4086959_4090703_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_CP041649.1|WP_004175568.1|4085165_4086554_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>NZ_CP041649.1|WP_004200278.1|4083077_4084856_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALESSCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>NZ_CP041649.1|WP_087866525.1|4082416_4083067_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEELLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_CP041649.1|WP_002910201.1|4081037_4082420_+|YchO/YchP-family-invasin
MPVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>NZ_CP041649.1|WP_065519739.1|4078285_4080886_+|nitrate-reductase
MKTIRTTCPYCGVGCGVLASVDDAGQVSVRGDDQHPANLGRLCVKGAALGETTGLAGRLLTPEVDGQQVAWPQALAETAARLRQIIDQHGPQAVAFYASGQLLTEDYYAANKLMKGFIGAANIDTNSRLCMSSAVTGYKRAFGADVVPCSYDDVENSDLVVLVGSNAAWAHPVLFQRLAQAKRDNPRLRIVAIDPRRTATCEIADRHLALAPGSDGGLFAGLLNALAEAGACVDGFRDGPQALAAARGWDVARVAAFCGLPADEVAGFYREFIAAPRAITLYTMGINQSASGSDKCNAIINVHLASGKYGRRGCGPFSLTGQPNAMGGREVGGLATMLAAHMDFVPDDLQRLARFWGTERLAQTPGLTAVELFAAIGRGEVKAVWIMGTNPVVSLPDSHAVSQALAACPLVIVSDVAAQTDTGRFAHIRFPALAWGEKNGTVTNSERRISRQRSFLPPPGEAKADWWIIARVGQALGYREAFAWQHPHDVFREHAALSGFENDGQRAFDIGALADLSREAWDAMPPVRWPVSRSEAAWDITRGWHGDGRLRMVPVTPQPTRATTDAFYPLILNSGRIRDQWHTMTRTGAVPRLMQHIAEPMVEVAPQDAVRYQLPADGLARIWSRHGVMVAKVEISEGQRPGSLFVPMHWNNQFARQGRVNNLLAAVTDPYSGQPESKQAAVAIAAWQPAWHSELFCREPLPFPAAWHWRRRATPGVLHYSLAGEASARQWLSAWCARRGWQLQVADGGAVWNLLAWHQGRLMLGWWSDAREPAVDCAWISAAFAAPPSDAVQRHALLSGRPGAAVAPRGRIVCSCFGVGEWSINEAIASGCASVGALGGKLKCGTNCGSCVPELNALLAAQRTRA
>NZ_CP041649.1|WP_023285280.1|4096136_4096979_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDTIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_CP041649.1|WP_002910109.1|4097021_4097480_-|YchJ-family-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>NZ_CP041649.1|WP_002910105.1|4099793_4100696_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>NZ_CP041649.1|WP_002910103.1|4100817_4101225_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>NZ_CP041649.1|WP_002910097.1|4102548_4105224_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>NZ_CP041649.1|WP_032103886.1|4105301_4105487_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS
>NZ_CP041649.1|WP_002910095.1|4105700_4106348_+|YchE-family-NAAT-transporter
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS
>NZ_CP041649.1|WP_004148754.1|4107084_4108719_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MTIITKKRLIAAGVLSALIAGNMAMAADVPAGVQLAEKQTLVRNSGAEPQSLDPNKIEGVPEANISRDLFEGLLNTSPKDGHPIPGVAESWDNKDFKVWTFHLRKDAKWSNGEPVTAQDFVYSWQRLVDPKTASPYASYPQYGHIVNVDEIIDGKKAPSELGVKAIDDHTLEVTLSEPVPYFYKLLVNPAMSPVYKPAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVMERNPHYWDNAKTVINTVTWLPTSSEVTYVNRYRSGELDMTYNQLPIELFQKLKKEIPNELHVDPYLCTYYYEINNQKAPFTDVRVRTALKLGLDRDIIANKVKGQGDLPAYGYTPPYTDGAKLSEPEWFTWSQEKRNEEAKKLLAEAGYSADKPLTFNLLYNTSDLHKKLAIAAASLWRKNLGIDVKLVNQEWKTFLDTRHQGTYDVARAGWCADYNEPTSFLNTMLSDSSMNTAHYKSPAFDKIMAESVKASDEAQRTAAYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGKDPMDNVYTKDLYVIKH
>NZ_CP041649.1|WP_002910089.1|4108804_4109725_+|oligopeptide-ABC-transporter-permease-OppB
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFNYLKQLAHGDFGPSFKYKDYSVNDLVAASFPVSAKLGFAAFLLAVVIGVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFAITLHWLPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY
>NZ_CP041649.1|WP_002910083.1|4111666_4112671_+|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF
MNAVTEQRKVLLEIADLKVHFDIKDGKQWFWQPSKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKQEEWRDVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMPRQEVRDRVKAMMMKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLEKTKTIQLLEGELPSPINPPSGCVFRTRCPLAGPECAKTRPVLEGSFRHAVSCLKVDPL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5148 : 13925

Salmonella_phage(50.0%)

integrase

attL 4722:4735|attR 15607:15620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4722:4735	attL	NA	NA	NA	NA
WP_023279535.1\|5148_6132_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.2e-45	55.8
WP_014907826.1\|6183_6738_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|6740_6956_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_012542200.1\|7057_7447_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_104510925.1\|8061_8280_+	hypothetical protein	NA	NA	NA	NA
WP_016160636.1\|8289_8484_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|8526_8871_+	transcriptional regulator	NA	NA	NA	NA
WP_117077010.1\|9012_11151_+	exonuclease	S4TNL0	Salmonella_phage	3.6e-98	42.3
WP_012542206.1\|11203_11449_+	excisionase	NA	NA	NA	NA
WP_117077009.1\|11429_12557_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_004150800.1\|12674_13925_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
15607:15620	attR	NA	NA	NA	NA

DBSCAN-SWA_2

133101 : 205280

Enterobacteria_phage(46.67%)

tail,integrase,protease,portal,head,plate,capsid,terminase

attL 128321:128340|attR 207822:207841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
128321:128340	attL	NA	NA	NA	NA
WP_023279565.1\|133101_133347_+	hypothetical protein	A0A0A7NPW2	Enterobacteria_phage	4.2e-19	56.8
WP_085834699.1\|133347_133563_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_019724745.1\|133591_133840_-	Late control protein ogr	NA	NA	NA	NA
WP_085834698.1\|133884_135039_-	phage late control D family protein	B9A7A9	Serratia_phage	1.1e-178	80.7
WP_085834697.1\|135191_136373_+\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	1.6e-156	69.8
WP_085834696.1\|136372_136888_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	64.7
WP_085834695.1\|136942_137242_+\|tail	phage tail protein	B9A7B2	Serratia_phage	1.3e-33	76.8
WP_102005025.1\|137238_137415_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	3.0e-11	71.4
WP_151362728.1\|137404_137992_+	hypothetical protein	B9A7B3	Serratia_phage	9.7e-38	50.3
WP_151362729.1\|137991_139272_+\|tail	phage tail tape measure protein	F1BUT7	Erwinia_phage	4.3e-107	61.8
WP_151362730.1\|139364_140114_+	hypothetical protein	A0A0A7NRZ9	Enterobacteria_phage	8.4e-34	37.9
WP_087638598.1\|140123_140612_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	6.8e-53	60.5
WP_151362731.1\|140740_141898_-\|tail	phage tail protein	S4TP62	Salmonella_phage	1.5e-45	49.3
WP_085834691.1\|142013_142247_-	hypothetical protein	NA	NA	NA	NA
WP_151362732.1\|142263_143676_-	hypothetical protein	X4YDU4	Salmonella_phage	3.5e-09	42.7
WP_064169234.1\|144444_145344_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.2e-88	59.9
WP_064169233.1\|145330_145699_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.0e-29	59.1
WP_085834720.1\|145695_146280_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.1e-62	61.9
WP_085834718.1\|146913_147372_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.6e-33	49.0
WP_129902296.1\|147516_147912_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_032424784.1\|148455_148737_-	hypothetical protein	B9A7B8	Serratia_phage	8.2e-19	58.4
WP_102004937.1\|148727_148928_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	2.3e-15	66.2
WP_102004936.1\|148927_149425_-\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	4.5e-60	70.3
WP_102004935.1\|149527_150454_-\|terminase	terminase	B9A7B6	Serratia_phage	2.8e-87	76.4
WP_102004934.1\|150501_151551_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	1.3e-104	55.0
WP_102004933.1\|151575_152409_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	2.9e-96	65.2
WP_102004932.1\|152569_154291_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	9.0e-225	66.0
WP_087638602.1\|154290_155343_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.5e-140	68.6
WP_102004931.1\|155791_156250_+	hypothetical protein	NA	NA	NA	NA
WP_117027739.1\|157306_158065_-	hypothetical protein	NA	NA	NA	NA
WP_102004929.1\|158902_161212_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.7e-202	51.9
WP_102004928.1\|161210_161588_+	hypothetical protein	NA	NA	NA	NA
WP_102004927.1\|162071_163040_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	1.6e-77	50.8
WP_023279602.1\|163624_163849_-	hypothetical protein	NA	NA	NA	NA
WP_032415217.1\|163917_164190_-	hypothetical protein	NA	NA	NA	NA
WP_004201494.1\|164192_164432_-	DUF4754 domain-containing protein	NA	NA	NA	NA
WP_087638608.1\|164443_164623_-	hypothetical protein	NA	NA	NA	NA
WP_040150881.1\|165258_165561_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	1.9e-21	51.0
WP_063106262.1\|165648_166656_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	4.0e-100	52.5
WP_004183618.1\|166752_168000_-	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
WP_004141456.1\|168152_168602_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002898602.1\|169525_169747_-	hypothetical protein	NA	NA	NA	NA
WP_002898600.1\|170003_170126_+	small membrane protein	NA	NA	NA	NA
WP_002898595.1\|171987_173409_-	glutamine synthetase	NA	NA	NA	NA
WP_004176617.1\|173622_174387_+	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_002898590.1\|174412_174970_+	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_023302080.1\|175290_176778_+	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_002898582.1\|178056_178998_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012068535.1\|179101_180187_+	tartrate dehydrogenase	NA	NA	NA	NA
WP_002898571.1\|182284_183409_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_021462870.1\|183427_184876_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_064159653.1\|184933_185899_+	oxidoreductase	NA	NA	NA	NA
WP_004176625.1\|186320_186608_+	hypothetical protein	NA	NA	NA	NA
WP_023316649.1\|186586_187207_+	EAL domain-containing protein	NA	NA	NA	NA
WP_002898458.1\|189484_190144_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
WP_002898457.1\|190232_190562_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_004150835.1\|190558_190840_-	acylphosphatase	NA	NA	NA	NA
WP_032424766.1\|190888_191677_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_143928273.1\|192438_193641_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_002898441.1\|193700_194018_+	heat shock protein HspQ	NA	NA	NA	NA
WP_002898432.1\|194614_195073_+	methylglyoxal synthase	NA	NA	NA	NA
WP_009308304.1\|195084_197139_-	DNA helicase IV	A7KV33	Bacillus_phage	1.8e-14	26.0
WP_002898422.1\|197726_199862_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_004150836.1\|199875_200472_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_071531182.1\|200562_200802_+	hypothetical protein	NA	NA	NA	NA
WP_002898418.1\|200820_201330_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_002898408.1\|201682_202753_+	porin OmpA	NA	NA	NA	NA
WP_065519824.1\|202884_203337_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_048265355.1\|203522_205280_+\|protease	Lon protease family protein	NA	NA	NA	NA
207822:207841	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2744293 : 2781093

Escherichia_phage(30.77%)

integrase,tail,plate,capsid,tRNA,terminase,lysis,holin

attL 2744256:2744272|attR 2745980:2745996

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2744256:2744272	attL	NA	NA	NA	NA
WP_047718525.1\|2744293_2745310_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	9.8e-195	96.7
WP_143928270.1\|2745309_2745897_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	2.2e-98	94.2
WP_047718526.1\|2746305_2746815_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	4.0e-88	97.0
2745980:2745996	attR	NA	NA	NA	NA
WP_047719163.1\|2746822_2747023_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	3.3e-30	93.9
WP_032454119.1\|2746986_2747325_+	hypothetical protein	A0A218M4I7	Erwinia_phage	8.0e-53	92.0
WP_032454118.1\|2747393_2747621_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	4.6e-20	74.7
WP_151362748.1\|2747620_2747908_+	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	2.0e-28	87.5
WP_047718529.1\|2747841_2748123_+	hypothetical protein	A0A218M4I8	Erwinia_phage	3.7e-43	91.4
WP_151362749.1\|2748115_2750317_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	91.5
WP_104456310.1\|2750458_2750899_+	DinI family protein	A0A218M4I0	Erwinia_phage	4.4e-59	82.5
WP_064388417.1\|2750981_2751713_+	hypothetical protein	Q37850	Escherichia_phage	4.7e-122	89.3
WP_023327792.1\|2751842_2752643_+	hypothetical protein	NA	NA	NA	NA
WP_102004973.1\|2752730_2752940_+	hypothetical protein	NA	NA	NA	NA
WP_143928267.1\|2754026_2754704_-\|terminase	terminase-like family protein	S4TT96	Salmonella_phage	8.7e-22	31.0
WP_102004971.1\|2756635_2757490_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	2.1e-126	81.0
WP_020316749.1\|2757563_2758622_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	2.2e-165	84.1
WP_143928269.1\|2758625_2759369_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	3.0e-100	80.1
WP_004175163.1\|2759970_2760174_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	4.2e-25	80.6
WP_004195910.1\|2760178_2760469_+\|holin	holin	O80308	Escherichia_phage	5.3e-37	85.7
WP_102004969.1\|2760455_2760953_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	1.1e-79	86.7
WP_101863058.1\|2760949_2761381_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	9.6e-43	67.6
WP_117059804.1\|2761262_2761514_+\|holin	holin	S4TNY4	Salmonella_phage	9.9e-24	71.2
WP_102004968.1\|2761476_2761944_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	6.3e-64	76.1
WP_070544311.1\|2761936_2762386_+	phage virion morphogenesis protein	O80313	Escherichia_phage	2.5e-49	68.7
WP_102004967.1\|2762454_2763096_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	5.2e-93	77.9
WP_102004966.1\|2763092_2763440_+\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	3.7e-45	77.4
WP_102004965.1\|2763444_2764353_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	7.1e-112	70.9
WP_102004964.1\|2764345_2764942_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	4.3e-49	54.7
WP_151362750.1\|2764946_2766536_+	hypothetical protein	X4YDU4	Salmonella_phage	8.9e-09	34.2
WP_143928313.1\|2766554_2766788_+	hypothetical protein	NA	NA	NA	NA
WP_151362751.1\|2766903_2768061_+\|tail	phage tail protein	S4TP62	Salmonella_phage	4.3e-45	49.3
WP_102005027.1\|2768170_2769352_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	7.9e-196	86.6
WP_014343412.1\|2769365_2769881_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-69	75.6
WP_004195711.1\|2769940_2770216_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
WP_015959005.1\|2770230_2770368_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.2e-17	91.1
WP_143928286.1\|2770360_2772799_+\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	8.1e-288	71.7
WP_032420037.1\|2772815_2773295_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	6.9e-66	77.7
WP_048288857.1\|2773294_2774461_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	4.7e-177	81.7
WP_032420109.1\|2774528_2774747_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.2e-34	88.9
WP_002917636.1\|2775104_2775611_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_004174339.1\|2775709_2777551_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_023342604.1\|2777769_2779515_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_001144069.1\|2779626_2779842_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_004900709.1\|2780079_2781093_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2

DBSCAN-SWA_4

4718825 : 4725254

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001620097.1\|4718825_4719914_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176262.1\|4720000_4720261_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620095.1\|4720558_4721419_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_071785981.1\|4722190_4722424_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|4722461_4723364_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004183946.1\|4723375_4724641_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|4724633_4725254_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

4992066 : 5041314

Klebsiella_phage(22.92%)

tail,integrase,transposase,terminase,holin

attL 4983589:4983604|attR 5038621:5038636

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4983589:4983604	attL	NA	NA	NA	NA
WP_117071669.1\|4992066_4995135_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	92.4
WP_064179058.1\|4995131_4995512_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	4.9e-67	92.1
WP_117071670.1\|4995522_4996005_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-77	89.4
WP_117071671.1\|4996185_4996650_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	66.4
WP_023327998.1\|4996964_4997300_-	hypothetical protein	NA	NA	NA	NA
WP_032416165.1\|4997383_5000281_-\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	3.5e-104	32.7
WP_077255553.1\|5000354_5000837_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	1.1e-18	43.6
WP_004217333.1\|5000833_5001190_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|5001266_5001473_-	hypothetical protein	NA	NA	NA	NA
WP_032416161.1\|5002145_5003318_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|5003341_5003734_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_032416160.1\|5003730_5004282_-	hypothetical protein	G8C7Q1	Escherichia_phage	2.0e-29	40.5
WP_004217344.1\|5004283_5004667_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_004190646.1\|5004653_5004887_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004190649.1\|5004896_5005151_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
WP_008807837.1\|5005152_5005548_-	hypothetical protein	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
WP_004190653.1\|5005869_5006823_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_016946679.1\|5006833_5007619_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_032416159.1\|5007703_5008816_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	5.6e-111	55.5
WP_032416157.1\|5010198_5011506_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	6.1e-149	59.1
WP_004218556.1\|5011483_5012488_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004244013.1\|5013035_5013221_-	hypothetical protein	NA	NA	NA	NA
WP_004218558.1\|5013349_5013595_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_019405025.1\|5014408_5014603_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_004190672.1\|5014553_5014829_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|5014825_5015170_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_008807831.1\|5015166_5015706_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.5e-101	99.4
WP_123229826.1\|5015702_5016002_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	9.9e-47	99.0
WP_094686393.1\|5016757_5017904_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.6e-145	91.5
WP_072032791.1\|5018947_5019394_+	hypothetical protein	NA	NA	NA	NA
WP_047694602.1\|5019299_5019557_-	hypothetical protein	A0A286N2Q3	Klebsiella_phage	2.4e-41	97.6
WP_023287514.1\|5019891_5020713_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.1e-98	67.5
WP_020804605.1\|5020828_5021185_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.3e-41	63.2
WP_020804598.1\|5021181_5021478_-	DUF1364 domain-containing protein	E5AGG0	Erwinia_phage	1.7e-35	74.5
WP_072032790.1\|5021480_5021687_-	hypothetical protein	H6WRY8	Salmonella_phage	2.8e-24	74.2
WP_022631485.1\|5021686_5022286_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	1.7e-90	79.9
WP_022631486.1\|5022343_5022565_-	hypothetical protein	NA	NA	NA	NA
WP_022631487.1\|5022642_5022876_-	DinI-like family protein	K7PM44	Enterobacteria_phage	7.0e-24	67.5
WP_022631188.1\|5023476_5024319_-	hypothetical protein	NA	NA	NA	NA
WP_086538002.1\|5024308_5025352_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_022631186.1\|5025605_5025842_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.4e-32	92.1
WP_022631185.1\|5025834_5026038_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.7e-29	92.5
WP_022631184.1\|5026034_5026403_-	DUF977 family protein	H6WRX9	Salmonella_phage	6.4e-11	44.3
WP_135728351.1\|5026410_5027160_-	DNA replication protein DnaC	H6WRX8	Salmonella_phage	3.0e-116	80.3
WP_022631181.1\|5028066_5028861_-	hypothetical protein	C7BGF1	Burkholderia_phage	6.3e-64	51.3
WP_022631179.1\|5028989_5029526_-	hypothetical protein	K7PJT7	Enterobacteria_phage	4.4e-61	69.5
WP_071784508.1\|5029528_5029792_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071836339.1\|5029888_5030245_+	hypothetical protein	NA	NA	NA	NA
WP_022631177.1\|5030471_5030780_+	hypothetical protein	G8C7T6	Escherichia_phage	1.7e-25	62.2
WP_022631176.1\|5030871_5030970_+	hypothetical protein	NA	NA	NA	NA
WP_004179600.1\|5031076_5031268_+	YebW family protein	NA	NA	NA	NA
WP_023282477.1\|5031276_5031432_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
WP_143928259.1\|5031568_5034664_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	2.4e-292	57.6
WP_135728349.1\|5034675_5035785_+	recombinase RecT	H6WRX0	Salmonella_phage	1.6e-182	85.6
WP_072201173.1\|5035828_5036485_+	hypothetical protein	M1F3E2	Salmonella_phage	9.1e-69	63.1
WP_016160778.1\|5036481_5036790_+	hypothetical protein	I6PD68	Cronobacter_phage	3.2e-24	56.9
WP_004892750.1\|5036797_5037037_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
WP_072031515.1\|5037046_5037361_+	hypothetical protein	K7PM28	Enterobacteria_phage	2.1e-10	50.8
WP_096903177.1\|5037257_5038445_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	8.4e-121	52.4
WP_023285021.1\|5038621_5039512_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
5038621:5038636	attR	NA	NA	NA	NA
WP_004140269.1\|5040504_5041314_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_6

5156945 : 5250265

Enterobacteria_phage(45.61%)

tail,protease,portal,head,plate,capsid,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072000001.1\|5156945_5157197_-	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	4.5e-08	49.2
WP_032424846.1\|5157240_5158380_-	phage late control D family protein	B9A7A9	Serratia_phage	3.0e-144	70.5
WP_117053929.1\|5158534_5159707_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.1e-156	70.0
WP_009486472.1\|5159706_5160222_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.8e-57	61.2
WP_004131585.1\|5160266_5160584_+	hypothetical protein	B9A7B2	Serratia_phage	1.0e-17	54.8
WP_071993210.1\|5160604_5160742_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	5.8e-10	65.9
WP_125346246.1\|5160728_5163704_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	4.9e-218	46.2
WP_125346245.1\|5163719_5164187_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	9.1e-55	65.4
WP_143928256.1\|5164401_5165091_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_151362764.1\|5165419_5166244_-	hypothetical protein	NA	NA	NA	NA
WP_105491132.1\|5166473_5167571_-\|tail	phage tail protein	G4KKN6	Yersinia_phage	3.4e-07	47.8
WP_009486478.1\|5167570_5167783_-	hypothetical protein	NA	NA	NA	NA
WP_143928255.1\|5167779_5170806_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	6.4e-24	40.7
WP_143928254.1\|5170795_5171719_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	7.6e-53	43.6
WP_017898624.1\|5171720_5172071_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	1.2e-27	56.5
WP_110540605.1\|5172067_5172652_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	8.7e-55	57.8
WP_031593577.1\|5172648_5173284_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.3e-56	51.4
WP_023328065.1\|5173280_5173748_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	5.4e-47	59.5
WP_050594805.1\|5173748_5174024_-	hypothetical protein	B6SD31	Bacteriophage	6.6e-05	34.1
WP_031593580.1\|5173929_5174259_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_023339943.1\|5174270_5174816_-	lysozyme	Q1I0Z1	Pasteurella_virus	6.3e-31	43.0
WP_004213110.1\|5174812_5175097_-	hypothetical protein	NA	NA	NA	NA
WP_004131559.1\|5175087_5175288_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_143928253.1\|5175287_5175803_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_125346239.1\|5175907_5176774_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	4.0e-72	57.4
WP_004213107.1\|5176823_5177858_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.2e-96	50.0
WP_040181436.1\|5177867_5178707_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_143928252.1\|5178863_5180591_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	6.7e-228	66.7
WP_143928251.1\|5180584_5181646_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	5.9e-142	68.4
WP_143928250.1\|5182344_5184528_+	AAA family ATPase	NA	NA	NA	NA
WP_143928249.1\|5184505_5186554_+	AAA family ATPase	NA	NA	NA	NA
WP_032425456.1\|5189866_5190094_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	7.1e-05	50.0
WP_032424826.1\|5190102_5190669_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	1.6e-13	33.2
WP_023328079.1\|5190966_5191230_-	hypothetical protein	NA	NA	NA	NA
WP_112070298.1\|5191245_5191623_-	hypothetical protein	NA	NA	NA	NA
WP_004131515.1\|5191638_5191857_-	hypothetical protein	A0A0M5M1I3	Salmonella_phage	4.7e-06	49.1
WP_004131514.1\|5191877_5192156_-	hypothetical protein	Q1JS60	Enterobacteria_phage	5.3e-42	88.8
WP_004213095.1\|5192276_5192576_+	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	6.5e-38	77.8
WP_032417006.1\|5193939_5194953_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|5195010_5195112_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|5195111_5195186_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|5195302_5195428_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|5195486_5195750_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|5195880_5196519_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|5196608_5197523_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004140494.1\|5199528_5200737_+	HD domain-containing protein	NA	NA	NA	NA
WP_049186422.1\|5200810_5202595_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.5e-17	36.1
WP_021313530.1\|5202601_5203492_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|5203612_5205121_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|5205431_5206118_-	EAL domain-containing protein	NA	NA	NA	NA
WP_074422711.1\|5206155_5206473_-	hypothetical protein	NA	NA	NA	NA
WP_004140501.1\|5206515_5206695_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|5206734_5207367_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|5207933_5208131_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|5208246_5209257_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004179357.1\|5210714_5211602_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|5211618_5212125_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|5212151_5212646_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|5212736_5212922_-	general stress protein	NA	NA	NA	NA
WP_004213087.1\|5213141_5213477_+	hypothetical protein	NA	NA	NA	NA
WP_004140529.1\|5213544_5214738_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|5214850_5215078_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_032424496.1\|5215098_5215284_-	hypothetical protein	NA	NA	NA	NA
WP_077265841.1\|5215231_5215531_+	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|5215527_5215851_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|5215843_5216236_+	amino acid-binding protein	NA	NA	NA	NA
WP_004892953.1\|5217217_5217370_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_110540609.1\|5219081_5228018_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	44.7
WP_016530340.1\|5228080_5228671_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.5e-81	77.0
WP_023342884.1\|5228702_5229413_-	hypothetical protein	Q6UAW4	Klebsiella_phage	1.1e-136	90.7
WP_016530342.1\|5229414_5230170_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.3e-130	84.1
WP_023342885.1\|5230166_5230514_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	4.7e-40	67.8
WP_101992312.1\|5230518_5233662_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	73.2
WP_071609142.1\|5233645_5233960_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	5.0e-41	75.0
WP_072216832.1\|5233980_5234409_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	2.7e-37	60.0
WP_016530349.1\|5234419_5235163_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.7e-111	83.0
WP_016530350.1\|5235171_5235573_-\|tail	minor tail family protein	K7PHM6	Enterobacterial_phage	2.7e-55	75.6
WP_016530351.1\|5235569_5236148_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.7e-79	81.2
WP_023342887.1\|5236151_5236427_-	hypothetical protein	K7PH43	Enterobacteria_phage	1.1e-23	57.1
WP_016530353.1\|5236419_5236746_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	8.1e-34	66.7
WP_101992313.1\|5236829_5238857_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	81.9
WP_023342889.1\|5238801_5240304_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.8e-246	83.0
WP_023342890.1\|5240303_5240516_-	hypothetical protein	A5LH28	Enterobacteria_phage	2.9e-24	80.0
WP_101992314.1\|5240512_5242615_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	82.4
WP_023342892.1\|5242614_5243103_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.3e-72	87.7
WP_077269580.1\|5243334_5243757_-	hypothetical protein	Q6UAS0	Klebsiella_phage	7.5e-40	59.9
WP_069345829.1\|5243753_5244071_-	hypothetical protein	NA	NA	NA	NA
WP_017898990.1\|5244022_5244385_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
WP_017898989.1\|5244538_5244760_-	hypothetical protein	NA	NA	NA	NA
WP_017898988.1\|5244866_5245055_-	hypothetical protein	NA	NA	NA	NA
WP_017898986.1\|5246134_5246485_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
WP_023279523.1\|5246481_5246979_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
WP_017880269.1\|5246978_5247194_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_004147997.1\|5248168_5248372_+	hypothetical protein	NA	NA	NA	NA
WP_143928246.1\|5249233_5250265_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-95	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041648

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041649

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection