CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041690	Youhaiella tibetensis strain fig4 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

210174 : 261590

Aurantimonas_phage(33.33%)

plate,terminase,transposase,integrase,tRNA,capsid,tail,head

attL 209378:209396|attR 261901:261919

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
209378:209396	attL	NA	NA	NA	NA
WP_147654747.1\|210174_211302_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_170267168.1\|211333_212011_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_049707317.1\|212152_212965_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_147654748.1\|212989_213949_-	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_049708257.1\|214128_214482_+	GFA family protein	NA	NA	NA	NA
WP_147654749.1\|214790_216182_+\|integrase	integrase	NA	NA	NA	NA
WP_147654750.1\|216298_216517_+	hypothetical protein	NA	NA	NA	NA
WP_147654751.1\|216500_216728_+	RNA-binding protein	NA	NA	NA	NA
WP_147654752.1\|216724_217201_-	hypothetical protein	NA	NA	NA	NA
WP_147658104.1\|217212_218343_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_147654753.1\|218449_219349_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_147654754.1\|219547_219934_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.9e-08	36.9
WP_147658105.1\|219957_220278_+	YnfA family protein	A0A2H4JF35	uncultured_Caudovirales_phage	5.9e-21	50.5
WP_147654755.1\|220281_220779_-	hypothetical protein	NA	NA	NA	NA
WP_147654756.1\|220775_220988_-	hypothetical protein	NA	NA	NA	NA
WP_147654757.1\|221028_221253_-	hypothetical protein	NA	NA	NA	NA
WP_147654758.1\|221249_222053_-	hypothetical protein	NA	NA	NA	NA
WP_147654759.1\|222046_222244_-	hypothetical protein	NA	NA	NA	NA
WP_147654760.1\|222243_222657_-	hypothetical protein	NA	NA	NA	NA
WP_147654761.1\|222745_223186_-	helix-turn-helix transcriptional regulator	A0A068C9F0	Rhizobium_phage	1.1e-30	56.0
WP_147654762.1\|223184_223397_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147654763.1\|223566_224127_+	hypothetical protein	NA	NA	NA	NA
WP_147654764.1\|224126_224612_+	hypothetical protein	NA	NA	NA	NA
WP_147654765.1\|224608_224890_+	hypothetical protein	NA	NA	NA	NA
WP_147658106.1\|225600_226533_+	hypothetical protein	A0A0M3LPV8	Mannheimia_phage	2.8e-23	35.4
WP_147654766.1\|226529_226862_+	hypothetical protein	NA	NA	NA	NA
WP_147654767.1\|226858_227953_+	DUF5131 family protein	R9TNA8	Rhizobium_phage	2.3e-72	46.2
WP_147654768.1\|227949_228279_+	hypothetical protein	NA	NA	NA	NA
WP_147654769.1\|228285_229155_+	DUF2303 family protein	I6NVL7	Burkholderia_virus	2.5e-13	31.1
WP_147658107.1\|229235_229625_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	3.5e-44	63.3
WP_147654770.1\|229624_229858_+	hypothetical protein	NA	NA	NA	NA
WP_147654771.1\|229857_231807_+	DNA cytosine methyltransferase	A0A068CDI9	Rhizobium_phage	5.2e-229	56.6
WP_049707338.1\|231803_232019_+	hypothetical protein	NA	NA	NA	NA
WP_147654772.1\|232015_232273_+	hypothetical protein	NA	NA	NA	NA
WP_147654773.1\|232278_232710_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PH90	Moraxella_phage	1.1e-14	37.7
WP_147654774.1\|232755_232950_-	hypothetical protein	NA	NA	NA	NA
WP_147654775.1\|233039_233918_+	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	1.5e-87	57.7
WP_147654776.1\|233914_234871_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147654777.1\|234897_235746_+	hypothetical protein	NA	NA	NA	NA
WP_147654778.1\|235871_236165_+	hypothetical protein	NA	NA	NA	NA
WP_147654779.1\|236276_236849_+	hypothetical protein	A0A0A8IL87	Aurantimonas_phage	8.1e-21	39.6
WP_147654780.1\|237002_237638_+	hypothetical protein	NA	NA	NA	NA
WP_147654781.1\|237634_239608_+\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	1.2e-183	49.8
WP_049707349.1\|241209_241485_+	hypothetical protein	A0A068CH50	Rhizobium_phage	1.7e-05	34.1
WP_049707350.1\|241484_242399_+	S49 family peptidase	A0A068CE01	Rhizobium_phage	6.7e-102	63.5
WP_147654782.1\|242516_242990_+	hypothetical protein	NA	NA	NA	NA
WP_147654783.1\|242991_243372_+\|head	head decoration protein	NA	NA	NA	NA
WP_147654784.1\|243385_244396_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.3e-49	38.3
WP_147654785.1\|244519_245038_+	hypothetical protein	NA	NA	NA	NA
WP_049707355.1\|245040_245397_+	hypothetical protein	NA	NA	NA	NA
WP_049707356.1\|245401_246214_+	hypothetical protein	A0A0A8IKZ7	Aurantimonas_phage	2.5e-44	40.6
WP_147654786.1\|246210_246759_+\|plate	phage baseplate assembly protein V	A0A0A8IL55	Aurantimonas_phage	1.8e-30	49.3
WP_145976849.1\|246772_246976_+	hypothetical protein	NA	NA	NA	NA
WP_049707357.1\|246972_247365_+	GPW/gp25 family protein	A0A0A8IN57	Aurantimonas_phage	1.1e-32	56.5
WP_147654787.1\|247368_248229_+\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	3.9e-43	36.8
WP_147654788.1\|248231_249347_+\|tail	phage tail protein	K4I1F8	Acidithiobacillus_phage	6.4e-22	37.2
WP_147654789.1\|249346_252568_+	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	5.9e-161	36.4
WP_147654790.1\|252581_254168_+	hypothetical protein	NA	NA	NA	NA
WP_147654791.1\|254164_254500_+	hypothetical protein	NA	NA	NA	NA
WP_147654792.1\|254598_255828_+\|tail	phage tail protein	A0A0A8IL59	Aurantimonas_phage	2.5e-136	62.3
WP_147654793.1\|255881_256400_+\|tail	phage major tail tube protein	A0A0A8ILB8	Aurantimonas_phage	4.7e-52	57.5
WP_147654794.1\|256400_256715_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_147654795.1\|256867_257158_-	hypothetical protein	NA	NA	NA	NA
WP_147658108.1\|257167_257416_-	signal recognition particle	NA	NA	NA	NA
WP_147654796.1\|257548_259840_+\|tail	phage tail tape measure protein	A0A193GYN8	Enterobacter_phage	1.9e-57	30.8
WP_147654797.1\|259845_260298_+\|tail	phage tail protein	A0A0A8IL04	Aurantimonas_phage	1.2e-32	46.0
WP_049707369.1\|260301_260532_+\|tail	tail protein X	A0A0A8IL62	Aurantimonas_phage	4.5e-07	44.7
WP_147654798.1\|260531_261590_+	late control D family protein	A0A0A8ILC1	Aurantimonas_phage	2.1e-75	46.4
261901:261919	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1306858 : 1349771

Rhodobacter_phage(11.76%)

protease,portal,capsid,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049704407.1\|1306858_1307164_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_049704408.1\|1307166_1307619_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049704409.1\|1307620_1308148_-	response regulator	NA	NA	NA	NA
WP_049704410.1\|1308452_1309055_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	6.7e-42	44.6
WP_147655442.1\|1309145_1311236_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_082202424.1\|1311308_1311713_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_147658149.1\|1311938_1314275_+	putative monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA
WP_049704413.1\|1314271_1314691_+	monovalent cation/H+ antiporter subunit B	NA	NA	NA	NA
WP_049707871.1\|1314690_1315068_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA
WP_147655443.1\|1315069_1316644_+	Na+/H+ antiporter subunit D	NA	NA	NA	NA
WP_049704415.1\|1316640_1317120_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA
WP_049704416.1\|1317116_1317437_+	cation:proton antiporter	NA	NA	NA	NA
WP_049704417.1\|1317433_1317781_+	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA
WP_049704418.1\|1317913_1318342_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	5.8e-24	47.7
WP_147655445.1\|1318975_1319743_+	hypothetical protein	NA	NA	NA	NA
WP_049704419.1\|1319739_1320153_-	SufE family protein	NA	NA	NA	NA
WP_147655446.1\|1320311_1320620_-	hypothetical protein	NA	NA	NA	NA
WP_170267234.1\|1320994_1322704_+	PAS domain-containing sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	7.3e-25	34.2
WP_170267235.1\|1322700_1323969_+	hypothetical protein	NA	NA	NA	NA
WP_147655449.1\|1323978_1324329_+	DUF1491 family protein	NA	NA	NA	NA
WP_147655450.1\|1324336_1325209_-	alpha/beta fold hydrolase	A0A1J0GNR5	Mycobacterium_phage	1.0e-06	32.4
WP_049704425.1\|1325336_1326167_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_147655451.1\|1326171_1326735_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_147655452.1\|1326799_1327936_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_147655453.1\|1328214_1329087_+	hypothetical protein	NA	NA	NA	NA
WP_147655454.1\|1329092_1329365_-	hypothetical protein	NA	NA	NA	NA
WP_049704430.1\|1329577_1329973_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_049704431.1\|1330133_1330346_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_147655455.1\|1330415_1330835_+	hypothetical protein	NA	NA	NA	NA
WP_147658150.1\|1331004_1332129_+	DNA-packaging protein	A0A0U4IJ26	Arthrobacter_phage	1.1e-58	37.7
WP_147655456.1\|1332885_1333251_-	VOC family protein	NA	NA	NA	NA
WP_049704434.1\|1333305_1334460_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	4.8e-65	38.2
WP_147655457.1\|1334754_1334946_+	hypothetical protein	NA	NA	NA	NA
WP_147658151.1\|1335079_1335562_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-29	46.9
WP_147655458.1\|1335575_1336796_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.5e-83	42.8
WP_147655459.1\|1336938_1337505_+\|head,tail	phage head-tail connector protein	H9YSG3	environmental_Halophage	9.2e-09	28.8
WP_147655460.1\|1337501_1337843_+\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	1.2e-08	34.0
WP_147655461.1\|1337973_1338384_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_147655462.1\|1338393_1338807_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_147655463.1\|1338803_1339103_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_147655464.1\|1339099_1339363_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_049704442.1\|1339426_1339744_+	gene transfer agent family protein	NA	NA	NA	NA
WP_049704443.1\|1339740_1339935_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_147655465.1\|1339934_1340483_+\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	3.7e-07	31.3
WP_147655466.1\|1340638_1341256_+	TIGR02217 family protein	A0A0K1LLZ8	Rhodobacter_phage	1.6e-51	51.2
WP_147655467.1\|1341252_1342143_+	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	9.2e-56	41.1
WP_147655468.1\|1342139_1342556_+	C40 family peptidase	F4YXU4	Roseobacter_phage	1.6e-26	46.8
WP_147655469.1\|1342769_1346528_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LL82	Rhodobacter_phage	3.5e-197	37.8
WP_147655470.1\|1346520_1347297_+	hypothetical protein	A0A088F6V6	Sulfitobacter_phage	5.4e-36	40.4
WP_145976690.1\|1347419_1347719_+	hypothetical protein	NA	NA	NA	NA
WP_049704449.1\|1347749_1348406_+	response regulator transcription factor	NA	NA	NA	NA
WP_147655471.1\|1348409_1349771_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	6.0e-06	20.7

DBSCAN-SWA_3

1980414 : 1988366

Burkholderia_phage(14.29%)

terminase,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147658175.1\|1980414_1981032_+	hypothetical protein	A9YWZ4	Burkholderia_phage	8.6e-53	53.9
WP_147655880.1\|1981278_1981743_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	4.5e-30	56.3
WP_147655881.1\|1981729_1983127_+\|terminase	phage terminase large subunit	A0A291AYH9	Shigella_phage	6.4e-88	43.6
WP_147655882.1\|1983133_1984984_+	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	6.2e-171	51.0
WP_147655883.1\|1984980_1985208_+	hypothetical protein	M4Q4P1	Dunaliella_viridis_virus	7.9e-20	66.7
WP_147655884.1\|1985833_1986958_+	DUF2213 domain-containing protein	L7TMD6	Rhizobium_phage	4.7e-73	46.2
WP_147655885.1\|1986961_1987327_+\|head	head decoration protein	NA	NA	NA	NA
WP_147655886.1\|1987340_1988366_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	1.2e-67	42.6

DBSCAN-SWA_4

2210761 : 2219535

Streptococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147656029.1\|2210761_2212591_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.8e-59	28.5
WP_147656030.1\|2212591_2213365_-	glucose 1-dehydrogenase	A0A2P0VP75	Tetraselmis_virus	7.6e-06	24.8
WP_147656031.1\|2213481_2214315_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_049705110.1\|2214316_2215093_-	TatD family hydrolase	NA	NA	NA	NA
WP_147656032.1\|2215095_2216646_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.8e-99	37.5
WP_147656033.1\|2216642_2217689_-	AAA family ATPase	M1NSC1	Streptococcus_phage	2.1e-06	31.7
WP_049705113.1\|2217685_2218372_-	dTMP kinase	Q2Z0N0	Pseudomonas_phage	1.1e-21	32.5
WP_147656034.1\|2218383_2219535_-	serine hydrolase	B6DZZ7	Stx2-converting_phage	5.7e-58	39.4

DBSCAN-SWA_5

2355851 : 2361687

uncultured_Mediterranean_phage(85.71%)