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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042822 Methylobacterium sp. WL1 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP042823 Methylobacterium sp. WL1 chromosome, complete genome 2 crisprs DEDDh,WYL,c2c4_V-U1,csa3,cas3 0 2 7 0

Results visualization

1. NZ_CP042822
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2604 3 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_2 5776 : 8385 3 Aurantimonas_phage(50.0%) transposase NA
DBSCAN-SWA_3 25485 : 27700 2 Erythrobacter_phage(50.0%) NA NA
DBSCAN-SWA_4 34026 : 34431 1 uncultured_Caudovirales_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP042823
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042823_1 4184501-4184597 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042823_2 5482654-5482743 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 10747-10773 4 0.852
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 10749-10775 4 0.852
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_LR594668 Variovorax sp. SRS16 plasmid 3 184778-184804 5 0.815
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 HM486077 Tsukamurella phage TPA2, complete sequence 21441-21476 5 0.861
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NC_015210 Tsukamurella phage TPA2, complete genome 21441-21476 5 0.861
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP006993 Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence 94205-94231 6 0.778
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1774881-1774907 7 0.741
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 690404-690430 7 0.741
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 684663-684689 7 0.741
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1273702-1273728 7 0.741
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1041036-1041062 7 0.741
NZ_CP042823_1 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder 4184536-4184562 27 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1441985-1442011 7 0.741
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP041156 Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence 86661-86696 7 0.806
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 1365192-1365227 9 0.75
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 852024-852059 10 0.722
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP012916 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence 666490-666525 10 0.722
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 251789-251824 10 0.722
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 560592-560627 10 0.722
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP032341 Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence 382114-382149 10 0.722
NZ_CP042823_2 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder 5482681-5482716 36 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 26766-26801 10 0.722

1. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 4, identity: 0.852

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatctcctcgatgcgcatggtgtgc	Protospacer
************** ***** ** * *

2. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 4, identity: 0.852

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatctcctcgatgcgcatggtgtgc	Protospacer
************** ***** ** * *

3. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 5, identity: 0.815

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatctcctcgatgcgcatggtcatg	Protospacer
************** ***** *** . 

4. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 5, identity: 0.861

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gcgcggggcaccctgatcctggccgccgccgcgcag	Protospacer
****** *********.***************  *.

5. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 5, identity: 0.861

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gcgcggggcaccctgatcctggccgccgccgcgcag	Protospacer
****** *********.***************  *.

6. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP006993 (Methylobacterium sp. AMS5 plasmid pAMS5a, complete sequence) position: , mismatch: 6, identity: 0.778

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ccgcactcctcgaaccgcatcgtctca	Protospacer
..*  ******** ************ 

7. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

8. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

9. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

10. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

11. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

12. spacer 1.1|4184536|27|NZ_CP042823|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.741

ttgatctcctcgatccgcatcgtctcc	CRISPR spacer
ttgatcgcctcgatccgcatcacgagg	Protospacer
****** **************..    

13. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

----gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
atcggcgc----cagcctgaccctgaccgccgccgccgac	Protospacer
    ****    ** **********.************* 

14. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.75

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gcattgttcaccctgaccctgccggccgccgccggc	Protospacer
**.. *. ************* * **********. 

15. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gctgtcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

16. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gccgtcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

17. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gccatcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

18. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gccgtcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

19. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gccgtcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

20. spacer 2.1|5482681|36|NZ_CP042823|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.722

gcgcggcgcaccctgaccctggccgccgccgccgaa	CRISPR spacer
gccgtcttcaccctgaccatgcccgccgccgccgcc	Protospacer
**    . ********** ** ************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 400895 : 419150 20 Caulobacter_phage(41.67%) NA NA
DBSCAN-SWA_2 1419025 : 1504370 60 Hokovirus(11.11%) terminase,transposase,holin,integrase attL 1482247:1482264|attR 1513603:1513620
DBSCAN-SWA_3 1696064 : 1777964 75 Stx2-converting_phage(36.36%) terminase,transposase NA
DBSCAN-SWA_4 2807459 : 2814958 10 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 4002089 : 4021764 17 Paracoccus_phage(36.36%) integrase,tail,head,protease,capsid attL 4010857:4010873|attR 4025103:4025119
DBSCAN-SWA_6 4607837 : 4640542 39 Stx2-converting_phage(28.57%) terminase,transposase,protease NA
DBSCAN-SWA_7 5022297 : 5081066 51 Acidithiobacillus_phage(11.11%) terminase,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage