CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041203	Cellulomonas sp. Y8 chromosome, complete genome	5 crisprs	WYL,csa3,DinG,DEDDh,cas3,cas4,Cas9_archaeal	0	3	1	0

1. NZ_CP041203

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041203_1

• CRISPR_ID: NZ_CP041203_1
• CRISPR_location: 56278-56357
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041203_1

Consensus_repeat	Method
CCGCTGTTGGTCTCCTCCAGCTCGTC	CRISPRCasFinder

spacers of NZ_CP041203_1

>1.1|56304|28|NZ_CP041203|CRISPRCasFinder
CGAGAGCTGGGTGTACATGGCGAGGACC

CRISPR arrays and Neighbor proteins around NZ_CP041203_1

CRISPR arrays

The CRISPR arrays of NZ_CP041203_1

>merge|NZ_CP041203|1|56278-56357|CRISPRCasFinder
CCGCTGTTGGTCTCCTCCAGCTCGTCCGAGAGCTGGGTGTACATGGCGAGGACCCCGCGGTTGGTCTCCTCCAGCTCGTC

>NZ_CP041203|1|1|56278-56357|CRISPRCasFinder
CCGCTGTTGGTCTCCTCCAGCTCGTC	CGAGAGCTGGGTGTACATGGCGAGGACC
CCGCGGTTGGTCTCCTCCAGCTCGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041203.1|WP_147793559.1|47294_48398_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl|CDD|99740
NZ_CP041203.1|WP_147793568.1|58738_59575_-|STAS-domain-containing-protein	unknown	unknown	gnl|CDD|132912
NZ_CP041203.1|WP_147793573.1|63925_64771_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147793556.1|43109_44354_-|glycosyltransferase	unknown	unknown	gnl|CDD|366154
NZ_CP041203.1|WP_147796802.1|49104_50223_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl|CDD|99740
NZ_CP041203.1|WP_147793565.1|56911_57937_-|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|340411
NZ_CP041203.1|WP_147793560.1|48394_49108_-|NeuD/PglB/VioB-family-sugar-acetyltransferase	unknown	unknown	gnl|CDD|274656
NZ_CP041203.1|WP_147793564.1|53553_55146_-|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272
NZ_CP041203.1|WP_147793569.1|59756_60920_+|acyltransferase-family-protein	unknown	unknown	gnl|CDD|224748
NZ_CP041203.1|WP_147793562.1|51241_52309_-|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl|CDD|223745
NZ_CP041203.1|WP_147793558.1|45915_47298_-|glycosyltransferase	unknown	unknown	gnl|CDD|340831
NZ_CP041203.1|WP_147793566.1|57924_58341_-|anti-sigma-regulatory-factor	unknown	unknown	gnl|CDD|340411
NZ_CP041203.1|WP_147793563.1|52478_53543_+|hypothetical-protein	unknown	unknown	gnl|CDD|100048
NZ_CP041203.1|WP_168216825.1|44350_45919_-|oligosaccharide-flippase-family-protein	unknown	unknown	gnl|CDD|240532
NZ_CP041203.1|WP_147796804.1|64837_65173_+|SnoaL-like-domain-containing-protein	unknown	unknown	gnl|CDD|378915
NZ_CP041203.1|WP_147793572.1|62982_63492_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|379324
NZ_CP041203.1|WP_147793561.1|50237_51245_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|187566
NZ_CP041203.1|WP_147793567.1|58337_58739_-|STAS-domain-containing-protein	unknown	unknown	gnl|CDD|132912
NZ_CP041203.1|WP_147793571.1|61948_62911_-|patatin-like-phospholipase-family-protein	unknown	unknown	gnl|CDD|366777
NZ_CP041203.1|WP_147793570.1|61035_61920_+|phosphotransferase	unknown	unknown	gnl|CDD|270704

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041203.1|WP_147793559.1|47294_48398_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl|CDD|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.16463e-137
NZ_CP041203.1|WP_147793568.1|58738_59575_-|STAS-domain-containing-protein	gnl|CDD|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	2.16601e-41
NZ_CP041203.1|WP_147796804.1|64837_65173_+|SnoaL-like-domain-containing-protein	gnl|CDD|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.30045e-05
NZ_CP041203.1|WP_147793556.1|43109_44354_-|glycosyltransferase	gnl|CDD|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	8.93285e-29
NZ_CP041203.1|WP_147796802.1|49104_50223_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl|CDD|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.58549e-131
NZ_CP041203.1|WP_147793565.1|56911_57937_-|SpoIIE-family-protein-phosphatase	gnl|CDD|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	6.04349e-25
NZ_CP041203.1|WP_147793560.1|48394_49108_-|NeuD/PglB/VioB-family-sugar-acetyltransferase	gnl|CDD|274656	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.	3.67154e-55
NZ_CP041203.1|WP_147793564.1|53553_55146_-|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	5.6601e-38
NZ_CP041203.1|WP_147793569.1|59756_60920_+|acyltransferase-family-protein	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.01939e-34
NZ_CP041203.1|WP_147793562.1|51241_52309_-|Gfo/Idh/MocA-family-oxidoreductase	gnl|CDD|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.95258e-53
NZ_CP041203.1|WP_147793558.1|45915_47298_-|glycosyltransferase	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.04481e-23
NZ_CP041203.1|WP_147793566.1|57924_58341_-|anti-sigma-regulatory-factor	gnl|CDD|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	7.78568e-36
NZ_CP041203.1|WP_147793563.1|52478_53543_+|hypothetical-protein	gnl|CDD|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	2.31394e-50
NZ_CP041203.1|WP_168216825.1|44350_45919_-|oligosaccharide-flippase-family-protein	gnl|CDD|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	2.75883e-71
NZ_CP041203.1|WP_147793572.1|62982_63492_-|AAA-family-ATPase	gnl|CDD|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	8.30737e-14
NZ_CP041203.1|WP_147793561.1|50237_51245_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.76201e-102
NZ_CP041203.1|WP_147793567.1|58337_58739_-|STAS-domain-containing-protein	gnl|CDD|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	6.76228e-31
NZ_CP041203.1|WP_147793571.1|61948_62911_-|patatin-like-phospholipase-family-protein	gnl|CDD|366777	pfam01734, Patatin, Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.	6.65796e-06
NZ_CP041203.1|WP_147793570.1|61035_61920_+|phosphotransferase	gnl|CDD|270704	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase. This subfamily is composed of uncharacterized bacterial proteins with similarity to APH and ChoK. Other APH/ChoK-like proteins include ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). These proteins catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	5.19393e-90

Protein sequences

>NZ_CP041203.1|WP_147793564.1|53553_55146_-|SpoIIE-family-protein-phosphatase
MTATAEDQRRVLVVDDTEAHRYVMASWLRRAGYVVTEAGTGRDALELAAGHDAVVLDVNLPDMSGFDVCERIKADAATSVPVMHVSATSIDARSRTSGLQRGADAYLVEPLDRDEFLVTVAALCRSHAARRGITEHARRLADLAAAVVPLASARSLDDLVAEAAQGGATVFGAPVVVVATAPDGMATRVVSPGPGRPVVRGRLLAPAADPPSPDPYDLPAADTPGVWREMLDRAGVTATAWHVSPLADAGGRTIGGFAVATPEPFDAEERELAEQLRAALNGALATLRSFAQEHLVALTLQRSMLPHTLPAPAGVRMAARYSASDAQLSVGGDFYDAIDLPDGRVAVVIGDVQGHSLRAATVMAQLRFSLGAYLLEGHPPARALDLLNTLLRRSHPELVTVCVAVLDLRDGTIEVANAGHLPPLLVTPAGARYLRATSPLLGVPAPGERAVARVATDGPCTLVLVTDGLLERRSGHLRDALDRMAEVAASVGTLEPDDLCDVLLRRFDHADQDDDVAVLAVHLTGERAPA
>NZ_CP041203.1|WP_147793563.1|52478_53543_+|hypothetical-protein
MDASQDPEVTAAPAIAPGADVDPRAAVGPGTRVWHLAQVREDAVVGADCVVGRGAYLGPGVRVGDRCKIQNHALVYEPAVLEDGAFVGPAAVLTNDLHPRAVNPDGTLKQPHDWEAVGVVVRAGASVGARAVCVAPVVVGRWALVAAGAVVTRDVPDHALVAGVPARRVGWVGRAGERLVPDGPGRWRCPVSGDAYLEDAAGLRATTPADDAGHPRTTVPRRARPRPPDRPHGTGTETADLAARVRALLTAADGPAAGETLPVSDRPMFGGVSFFLGEAMIASARGSGDLLVRVASDRHDELADRPGAAPSRMGGRTMGRGWLTVESAAVAADEDLAAWLLLAREGAPDRRPSR
>NZ_CP041203.1|WP_147793562.1|51241_52309_-|Gfo/Idh/MocA-family-oxidoreductase
MADPLRVAVIGAGYWGPHLARNFRASPEWDLVAVCDRDEERARRVVGGRSTVEVVTDAAEVLARADLDAVAVATPAATHAGLVLAALDAGKHVLVEKPIAANGADARRMVARAAEVGRVLMVDHTFCYTPVVRAIRDLVADGSLGDLHFVDSVRINLGLVQPDVDVFWDLAPHDLSILDFVVPGGLVPTGVAAQGGDPLGVGRSCVGYLTLPLAGGALAHLHVNWLSPTKIRQMVVGGSRRTLVWDDLAPQQRLTVYDRGVDPGEGLPDRTTARVSYRLGDAWSPALPEREALAAVVDELAAAVRGRRAPLTDGHAGLRVLDVLESASLSLSDGGRLVPVAGGELVGAGSKGRRR
>NZ_CP041203.1|WP_147793561.1|50237_51245_-|NAD-dependent-epimerase/dehydratase-family-protein
MTAVAGARVLVTGGAGTVGSTLVDQLLAAGAGRVVVLDDLSRGRRENLAAALATGRVDLVVGDLRDRDTVHDVVRGADVVLHQAAIRITQCAEEPRLALEVLVDGTFTVLEAAAEHGVGKVVAASSASVYGAAEKFPTRERHHHHNNDTFYGAAKSFTEGMARAFRAMHGLDTVMLRYFNVYGPRMDVHGRYTEVLVRWMERIADGLPPLVFGDGRQTMDFVHVRDVARANVLAATSGVVEGAYNVASGTETSLLQLAEALLRVMGSDLAVEHGPERAVNGVPRRLADTAAARRDLGFVAEVGLEEGLRELVDWWRPRRADVAAGRAAAAPAVVP
>NZ_CP041203.1|WP_147796802.1|49104_50223_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MRPWLGAEEVAAVTEVLASGWVAQGPRVAAFEDAFAASQRAGHAVALSSCTAALHLALVVAGVRPGDDVVVPSFSFVATANAVVHAGARPVFADVDPTTGNLTAATVAEALTARTAAVVAVDQGGVPVDLDAVRALTDPLGIVVVEDAACAAGSTYRGLPVGARAEVAAWSFHPRKVLTTGEGGMLTTARADWSARARRLREHAMSVSAADRHGAVLAPAEEYLEVGFNYRMTDLQAAVGLVQLGRLPEAVVRRRALAAAYAAELADLPALRPVADPPWGTGNFQSYWVEVLPGSPVDRDGLLARLAAADVSARRGIMAAHRQPAYAGGDHGRAPLPVTERLTDRTLILPLFHEMTGSEQGRVVDVLRAAVR
>NZ_CP041203.1|WP_147793560.1|48394_49108_-|NeuD/PglB/VioB-family-sugar-acetyltransferase
MTAGGRPLVLVGAGGLAREVLAVVRRHGPYEAVGVLDDDPAARGSEVGGVPVLGGLPALAGLPDAAVLACVGHGRARAGLVTRLAAAGVGPDRWATVVHPSVDVPDGCTVGAGSVLLAGVVLTADVRVGRHVVLMPHVTLTHDDEVRDAATLAAGATLGGGVRVGPRAYLGMRSAVRERVRVGAGSTLGMGAVLLSDLPDGETWAGVPARPLHPAVDGHVHGVRDPGTRDDERAVRA
>NZ_CP041203.1|WP_147793559.1|47294_48398_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MRIPLVDLAAQQAEVHEEVRAGLDEVFATAAFVGGPAVGRFEAAYADAVGARHCVGVANGTDALELALRAVGVGPGAEVVLPVNTFVATAEAVSRIGAVPVLVDVDPAYLLVDPAAVRAAVGPRTAAVVPVHLFGQVAPVEELAKIAADGGVPLVEDAAQAQGARRHGRPAGALGLAAGTSFYPGKNLGAAGDAGAVTTDDAQVAHRVRALAGHGSTQKYRHDVVGMNSRLDTVQAVVLEAKLRRLAGWNERRRAAAARYDALLQDLPGVQPPRTDPANDDVWHLYVVQVADRDRVLAALHAAGVGAGVHYPVPLHLTGAYRHLRLGRGAFPVAEAAADRILSLPMHPHLTAAEQEEVVEVLGRAVA
>NZ_CP041203.1|WP_147793558.1|45915_47298_-|glycosyltransferase
MRILVYPGVMEVGGSQLNAVQLAHEVARAGHDVLMFGPDGDLVPLVGALGLEYVRAPREGRWPSPRNMAALRRLVVDRGVDVVHGYEWGPSLDLAFGPHRRLGTPLVTTVLSMDVPDHVPRHEPLVVGTRRLHEQQRVLRDRVHLIEPPIDTERDAPGAAGPDARALLGLRPDDLVLSVVGRLSADLGKADGVLAAIEVVGRLAGAPGTAGEGALRLVVVGTGPEQGRVAARADAVNAAAGEQVVVVTGQLLDPRPAYDAADVVLGMGSSILRGMAFGKPVVVQGDRGAWRALTRDTLGGFLHGGWLCEGPGGGADLERALAPLLADPGLRAQRGALGRAVVLDAYSLAAAGRRQEAVYADALATRPSEAVRREALTRCAVDVAKFKVSLGRQRAAAAVRARAGSVAGPGGGLRAGDDHSSRGAGGAPASRGAGTGPGSRGGGEPGAGATDAAPQREGAR
>NZ_CP041203.1|WP_168216825.1|44350_45919_-|oligosaccharide-flippase-family-protein
MTAPAGLGRQVGRGLAWGSAGSVVLRFGNVLVGIVLARLLAPEDFGVFAIALAVQGVLVTVVDLGLSADLVRAREPLRLEPTVATISLVLGALLAGAMAAGAEPVARALGSDRAAPVIAVLAATLVVSAAGVVPYARLQRGFHQREIFATGLVDLVVGTVVTVLLVRAGWGPMALAVSRLVAQPAATGAQFLLSRTVPRFGYDPALARGAIAYGAPLAGANLLSIALLAVDKVVLARGAGEVALGYYVLAFNVASWPMTVIGQTVRPVALAAFARLDGRPEPDAGEPGPPRAADGDGGLALATRLTWAAAVPVACLLGALALPVVTLLYGGRWAPAAGALTALAAFGAVRVLFDLLATYLVARGATRPVLGVQVAWLVALVPAVVVGARTGGSVGVGWAHVVVAGAVVLPLYLVAVRRSGADLRALARATWLPLVAAAPTVAAAALVARQVGGSFAALAAGGTAGALVYVAVAGRPLLRDLRAARAARADDEAATDPAAPPVLPPAAPAAAGPLPADPERVP
>NZ_CP041203.1|WP_147793556.1|43109_44354_-|glycosyltransferase
MTALAGPLTRTLRVRPHAVPTADATVTVVIPCHDYARYLPAAVGSALGQTGVEVDVVVVDDASTDDSLAVAGRLAAADPRVAVLAHPLNRGPVETFNDGLARATGEFLVRLDADDLLTPGSLARSVAVARAYPSVGLVYGHPVHFAGEPPRAARTRARRWTIWPGRRWLADRCADGYNVITSPEVLVRRSVVAAVGGQRPLAHTHDMEMWLRLAAHADVAHVGGADQAWHREHPASLSAREVDDATDFRERVAAFAELAAAGTAGLPERDALAAAARRALVRQALRACRYEVDRGRRDAERVRRLMAEALVVAPELAGPWRRLDAALDAEPGARDRAAGLARAVRVRADDVLRGRRWARTGTYTRDAARGAPPVPPLVAGDGAPASSGGPGWSRGAPGGGPVTAADLRRTGGAA
>NZ_CP041203.1|WP_147793565.1|56911_57937_-|SpoIIE-family-protein-phosphatase
MVAVTADATVEDVAWITADHVSAAGTARRAAAALAERVGMGADRVGEIGLAVTELTANLVKHAGSGAVLLRLRHAAAGPVVEVVTLDSGPGIDDVDAAVVDGTSSAGTLGIGLGAVVRMASGWDAWTRPGAGTVLTAAFAAEAGAPVPAPSAVGLTRPMTGQEVCGDAYAIREDDGVRTLLLADGLGHGPLAAVASAEAVRAFRAAAPAGPADLLRVVHRALAGTRGAAAAVARLDADQVRYAGVGNIAGVVDDGATRRAMISHPGIVGAQARTIREASYPLPRGAVVVLHSDGVTERHSFEPYPGLLGRSPLVTAAVLLRDFGVRRDDASVVVARAGVPA
>NZ_CP041203.1|WP_147793566.1|57924_58341_-|anti-sigma-regulatory-factor
MTAVEPDAAQRLAITTDGDVVRVRQAVRALAQAARLSLVDQTKLVTAASELARNTLIYGGGGEAVLSELADGRRTGVRVEFRDDGPGIPDLDQAMTDGWTSGSGLGLGLSGSRRLVEQFEIDTAPGRGTRVTIASWSR
>NZ_CP041203.1|WP_147793567.1|58337_58739_-|STAS-domain-containing-protein
MDAVPILKLGSTLLVSIQVDLQDQTALQLQEDLAERITQTGARGVLIDISGLEIVDSFIGRMLSSIAGISRVLDATTVVVGMRPAVAITMVELGLQLDGVKTALDVEKGLRMLQPADATSPEALLLGLDADRA
>NZ_CP041203.1|WP_147793568.1|58738_59575_-|STAS-domain-containing-protein
MPGADAARLAEILESRRADISATWLEAVITELRGRTTRSEAGREQGEILDALVGGLGQGGLRLTDPAFDGLRGLLADLSATRARLGFTPRETAVGVLALKEGLYALAADEQGTGLADLMALVRLVDDLGLFTFESFAAAREAIIAEQAEQLLELSTPVVKLWEGVVAVPLVGTLDSARTQVVMEKLLQTLVDTGSEHAIIDITGVPAVDTQVAQHLLKTVVAARLMGAECTISGIRPQIAQTIVALGIEFGDISTKATLADALVAALRANGAAKAATA
>NZ_CP041203.1|WP_147793569.1|59756_60920_+|acyltransferase-family-protein
MTVAEHNRATPRTAVSPGGVDPAPAGRVAGLDALRGVAIALVMLTHADGSVFGSGGMVGVTLFFVLSGFLITGLLVRDLEADGRVRWGRFYGARALRLLPPLALVLVGYLVVEGVLGLFAGPSQVPWTLFSALTYTSNLPYLPHGSGAFFHLWTLATEEQFYLLWPLVLAVAWRRRWVRRAVALGIAGSLLLCAATIAYQAPDVARVYALPTSWSVALFTGCALRLGRDRASRALPAGTAVRRLLAGGLLAAFAALAVAPGLDASPWMYLAVVPAIAVASAVLVLLAAESRWRARGPVRAVVALGTVSYAAYLWNLPITQWLGDPRDLAGGALGIALTLAAATASWWLVERPAARLRRRWQDGAGPGVVLRPRVPRSRVPRPRPTAE
>NZ_CP041203.1|WP_147793570.1|61035_61920_+|phosphotransferase
MTTGTPIHADAIDADLVRALIAEQHPRWADLPVRPVADGGNDHRMFRLGEDLAVRLPSAPGYVPQVAKEQTWLPRLAPHLPLPVPEVRAVGEPSERFPAPWSVYGWRPGTPLARSAVEDPVRLAGDLAQFLVALRGCDTTGAPGPGLHSAFRGGPLAHWDDEVGDILHRVHGRDRDLAAGLWRDALDAPPTGAPTWLHGDVAVNNLLVRDGVLAAVLDFGCSAVGDTACDTTPVWTWLSGAARDVFRAELGVDDATWARGRGWAVWKALILVTNEPPEQRRLARHVLDELHAGV
>NZ_CP041203.1|WP_147793571.1|61948_62911_-|patatin-like-phospholipase-family-protein
MTTPAPATGSGERALVLGGGGSTGNAWLLGVVAGLLDGGVDVTGADLVVGTSAGATAAAQLGGAAAAELYAATLAPPVPPVPSAPRAGGAAPGRGARGPGGSAASRGGAGGPGPGGVAQHLARRRALVAAAADPADLRRRTGADALERAAAAGPDAPGRWRATVAARLPRAAWPERRTLLTAVDAHTGEPVVLDGSSGVELVDAVAASCAGGPAYPIGDRWYVDGAHRRGENADLAAGYGRVLVLAPLGGASLTPAAWRLDLAAQVEDLRAAGSRVEVVVPDDPGLFGERAMDPALRPVAARAGHDRGRALAGRLAGFWG
>NZ_CP041203.1|WP_147793572.1|62982_63492_-|AAA-family-ATPase
MLVQVCGLPGSGKTTLAAAVADAVPVVALRVDAIEAAMRRYDVPPEQSGIAAYAVMHALAGPHLRRGQVVVADAVSPSGAARDGWAGTAAAHGATLRVVEVVCPDPAEHRRRVETRPADLPGFPLPTWDDVRRTAREYEPRHDERLVVDSTRPVAEALPEVLAYLGLVR
>NZ_CP041203.1|WP_147793573.1|63925_64771_+|hypothetical-protein
MHLDTHAVDHYLAHGELATSWVVRAAAGDDAGSAHPVLPHADDRAVVRGLRDALVRLLDPFAPAHPDAWAAVAPDWPARVEDARVALVVGWPQPYDAGVRTDPDGRDVVVLDVARLAGYGPDAGLATARTVLDHEVGHVLVASLWPADAAAGHRSRLDRLVFDEGLAQHLAMRGHPALAPSSTSLVGRRRAAHDALRDARDLTDAAAQRAALHRAAAADDFWDKFGCVAGLLAFADAERTGGLGGPAALARLGWPGFVDRVLARAPVAAPTEPSRSPAGRE
>NZ_CP041203.1|WP_147796804.1|64837_65173_+|SnoaL-like-domain-containing-protein
MDANLRRVFGERDPERRRVAIEDTYTRDVVFSDPEETVQGWDAVHRKAQGLLDGAPGSAFSADGPVRRAQDLALLAWQFGPPGQDPVVRGIDVAEIREERIARLWTVLVQD

Crispr_ID: NZ_CP041203_2

• CRISPR_ID: NZ_CP041203_2
• CRISPR_location: 481598-481695
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041203_2

Consensus_repeat	Method
GACGCGAACGGGTTGTTGCCCGGGCG	CRISPRCasFinder

spacers of NZ_CP041203_2

>2.1|481624|46|NZ_CP041203|CRISPRCasFinder
CGGGCCGCCGGGGCGCGGACCGCCGGAGCGGGGCATGCCCTGGGAC

CRISPR arrays and Neighbor proteins around NZ_CP041203_2

CRISPR arrays

The CRISPR arrays of NZ_CP041203_2

>merge|NZ_CP041203|2|481598-481695|CRISPRCasFinder
GACGCGAACGGGTTGTTGCCCGGGCGCGGGCCGCCGGGGCGCGGACCGCCGGAGCGGGGCATGCCCTGGGACGACGCGAACGGGTTGTTGCCCGGGCG

>NZ_CP041203|2|2|481598-481695|CRISPRCasFinder
GACGCGAACGGGTTGTTGCCCGGGCG	CGGGCCGCCGGGGCGCGGACCGCCGGAGCGGGGCATGCCCTGGGAC
GACGCGAACGGGTTGTTGCCCGGGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041203.1|WP_147793843.1|475048_475489_+|DUF1905-domain-containing-protein	unknown	unknown	gnl|CDD|378097
NZ_CP041203.1|WP_147793840.1|471060_473295_-|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl|CDD|131743
NZ_CP041203.1|WP_147793855.1|489319_490198_+|LytR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367673
NZ_CP041203.1|WP_147793850.1|483913_484492_-|ribosome-maturation-factor-RimP	unknown	unknown	gnl|CDD|234627
NZ_CP041203.1|WP_147793846.1|478777_479236_-|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl|CDD|234787
NZ_CP041203.1|WP_147793842.1|473891_474893_-|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl|CDD|235536
NZ_CP041203.1|WP_147793844.1|475494_476460_-|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl|CDD|235113
NZ_CP041203.1|WP_147793849.1|482789_483911_-|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl|CDD|237061
NZ_CP041203.1|WP_147793848.1|482421_482793_-|DUF448-domain-containing-protein	unknown	unknown	gnl|CDD|377288
NZ_CP041203.1|WP_147793856.1|491127_492288_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl|CDD|234737
NZ_CP041203.1|WP_147793853.1|488017_488923_+|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl|CDD|223344
NZ_CP041203.1|WP_147793839.1|469733_471059_-|insulinase-family-protein	unknown	unknown	gnl|CDD|223685
NZ_CP041203.1|WP_147796867.1|476456_477044_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP041203.1|WP_147793841.1|473514_473784_-|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
NZ_CP041203.1|WP_147793852.1|486150_487962_-|proline--tRNA-ligase	unknown	unknown	gnl|CDD|236405
NZ_CP041203.1|WP_168216843.1|468736_469438_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147793845.1|477163_478666_+|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP041203.1|WP_147793854.1|489014_489320_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147796868.1|490213_491101_-|DUF4081-domain-containing-protein	unknown	unknown	gnl|CDD|379120
NZ_CP041203.1|WP_147793851.1|484752_485937_+|DUF4439-domain-containing-protein	unknown	unknown	gnl|CDD|373114

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041203.1|WP_147793843.1|475048_475489_+|DUF1905-domain-containing-protein	gnl|CDD|378097	pfam08922, DUF1905, Domain of unknown function (DUF1905). This domain is found in a set of hypothetical bacterial proteins.	5.12244e-20
NZ_CP041203.1|WP_147793840.1|471060_473295_-|polyribonucleotide-nucleotidyltransferase	gnl|CDD|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP041203.1|WP_147793855.1|489319_490198_+|LytR-family-transcriptional-regulator	gnl|CDD|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	9.17839e-45
NZ_CP041203.1|WP_147793846.1|478777_479236_-|30S-ribosome-binding-factor-RbfA	gnl|CDD|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.58079e-47
NZ_CP041203.1|WP_147793842.1|473891_474893_-|bifunctional-riboflavin-kinase/FAD-synthetase	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.56742e-119
NZ_CP041203.1|WP_147793844.1|475494_476460_-|tRNA-pseudouridine(55)-synthase-TruB	gnl|CDD|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	2.84212e-152
NZ_CP041203.1|WP_147793849.1|482789_483911_-|transcription-termination/antitermination-protein-NusA	gnl|CDD|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP041203.1|WP_147793848.1|482421_482793_-|DUF448-domain-containing-protein	gnl|CDD|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.4768e-21
NZ_CP041203.1|WP_147793856.1|491127_492288_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl|CDD|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP041203.1|WP_147793853.1|488017_488923_+|Fpg/Nei-family-DNA-glycosylase	gnl|CDD|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	1.0765e-46
NZ_CP041203.1|WP_147793839.1|469733_471059_-|insulinase-family-protein	gnl|CDD|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.11463e-108
NZ_CP041203.1|WP_147796867.1|476456_477044_-|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.15565e-10
NZ_CP041203.1|WP_147793841.1|473514_473784_-|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.03159e-51
NZ_CP041203.1|WP_147793852.1|486150_487962_-|proline--tRNA-ligase	gnl|CDD|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP041203.1|WP_147793850.1|483913_484492_-|ribosome-maturation-factor-RimP	gnl|CDD|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	2.36642e-32
NZ_CP041203.1|WP_147793845.1|477163_478666_+|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.69983e-84
NZ_CP041203.1|WP_147796868.1|490213_491101_-|DUF4081-domain-containing-protein	gnl|CDD|379120	pfam13312, DUF4081, Domain of unknown function (DUF4081). This domain is often found N-terminal to the GNAT acetyltransferase domain, pfam00583 and FR47, pfam08445.	1.67029e-42
NZ_CP041203.1|WP_147793851.1|484752_485937_+|DUF4439-domain-containing-protein	gnl|CDD|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	1.73178e-08

Protein sequences

>NZ_CP041203.1|WP_147793846.1|478777_479236_-|30S-ribosome-binding-factor-RbfA
MVDHPRARKLADRIQQIVAQMLDTRIKDPRLGFVTVTDVRVTGDLQHASVFYTVLGDEEARTGTAQALESAKGLIRSEVGKQTGVRLTPTLEFHLDAVPETAAHLDAALLEAARRDREVSALATGAQYAGEADPYRKPADEDEDADEADAAR
>NZ_CP041203.1|WP_147793845.1|477163_478666_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSTQTRTTAPGAGAAGAPADPPSAAAAGSPVAGAPAPGPVRAATRAVPVAVALLAASLPMFMATLDNLVVTSALPVLQAELGATLTDLQWVVNAYTLAFATLMIAAATLGDRWGRRRTFLGGIAVFTLGSIAAALAGSPDALIAARALQGVGAAAVMPLSLTLLAAAVPASRRAMAIGVWGGVSGLGVALGPVVGGAVVEGISWEAMFWINVPVALVAVPLVLRALPEGRGRAQRLDLLGLVLAAAGVLGIVWGVVHGNEDGWTSAGVLGPIVGGVVALALFLRHEARTPHALVPLRLFRSRSFSVANVSGFAFSLGAFGAVFLLAQYLQVVQGYSPLEAGLRTLPWTAAPMVVAPLAGMLAPRVGVRVLLTGGLVAQAAGLAWLGFAASDGGYAALVPGLVLAGVGMGLTFAPSATAVLSGMAPDDHGTASSTNSTLREVGVALGVAVLTAVFTAAGGTISPDGFDAGLRPAVLTGAAVIALAAVASLAMPRGTGREDA
>NZ_CP041203.1|WP_147796867.1|476456_477044_-|TetR-family-transcriptional-regulator
MSGDQRREQILAAAIEVFAEGGYAGTTTDQVARAAGVSQPYVVRLFGSKQRLFLEAYRHTTERVLAAMAAVEPGPGAVERTGRAYVELMADRDLLRVLMHGFTAEDPEVTALARHTLGEVFRLFRQRVEPDDADGDETARRFVADGMLINVLLSSDGFAHAGQDAGFDALLRCFAPEVVAAGTAAAAGDRAGATA
>NZ_CP041203.1|WP_147793844.1|475494_476460_-|tRNA-pseudouridine(55)-synthase-TruB
MSPARDQRRPDRPRRPTAPDGLLVVDKPQGWTSHDVVAKARGLAGTRKVGHAGTLDPMATGVLVLGVGRATRLLTYVVGADKEYTATIRLGVTTTTDDAEGELVARADAAGVTRPALDAGVAALTGPIQQVPSAVSAIKVDGQRAYARVRAGEDVELAARPVTISRFDVHEVRQVPDADGSGVAALDVDVTVVCSSGTYIRALARDLGRGLGVGGHLTALRRTRVGGYGIDGARSLDELEAWPADVPLDTLPLADAARATFPVRELTEAEARALSYGQRIPATGTGAGVTVAALTPEGALAALLEDRGPHARPALVFAAAT
>NZ_CP041203.1|WP_147793843.1|475048_475489_+|DUF1905-domain-containing-protein
MVTLRTTLVATGGTTTGIAVPEDVVAGLGRGKRVPVVVTINGHAYRGSIAPYSGGYWVGVSAANRAAAGIEAGEPVEVDLAVDDAPRTVEVPADLAAALAAGGPALAEAWAALSYSKQRAHVLAVEGARTDATRERRVASVVAALG
>NZ_CP041203.1|WP_147793842.1|473891_474893_-|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWTDLAQVPADFGPSVVTVGNFDGVHRGHVGVLTRMVADARAVGARSVAVTFTPHPQQVHRPDSAPPLLTGDADRLELLEQTGLDAVLLLTYTLDFAQQTAEEFVRRHLVDGLHARTVVVGRDVRFGRGNAGDLATMVELGERFGFAVEVIEDVAPDPADDDPAAALADPLRRRWSSTWVRELLVAGDVRQAARVLGRPHRMRGTVVHGDKRGRDLGFPTANLSQDATGMVPADGVYAGWLRRPAAPAGSPDAVLPAAVSVGTNPTFAGLQRRVEAYVLDRTDLDLYGEEVVLEFVERLRPTLRFDSVDELITRMHQDVAGVRDVLAGAAG
>NZ_CP041203.1|WP_147793841.1|473514_473784_-|30S-ribosomal-protein-S15
MPLDSATKKSIMAEYATHEGDTGSPEVQIAMLTQRINDLNEHLKTHKHDHHSRRGLLLLVGQRRRLQGYLQKVDIDRYRSLIQRLGLRR
>NZ_CP041203.1|WP_147793840.1|471060_473295_-|polyribonucleotide-nucleotidyltransferase
MEGPEIQFAEAVIDNGRFGTRTVRFETGRLAKQAAGSAMAYLDGETALLSATTAGKHPKDQFDFFPLTVDVEERQYAAGKIPGSFFRREGRPSTDAILACRLIDRPLRPLFVKGLRNEVQVVVTVLAIHPDDAYDVLAINAASISTQISGLPFSGPVGAVRIALIDGQWVAFPRYTERERATFEIVVAGRVVEGGDVAIAMIEAEAPEKSWNLIKDEGGVAPTEAVVAEGLEASKPFIKALVEAQQQLAAQSAKETRDFPTFPDYQPDAYAAVEGAAEAKILEAMQIADKQTREGRLDEIKAEVLDQLAGSFEGREKELSAAVRSVTKKVIRQRILTDGFRIDGRGLRDIRTLSAEVEVLPRVHGSALFERGETQIMGVTTLNMLRMEQQLDTLSPETRKRYMHNYNFPPYSTGETGRVGSPKRREIGHGALAERALMPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDTVDGETRYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDTKLDGIPASVLADALTQAKEARLAILDVLNEAIDVPDEMSPNAPRVITVKVPVDKIGEVIGPKGKMINQIQEETGADISIEDDGTVYIGATDGPSAEAARAAINAIANPHMPEIGERFVGTVVKTTTFGAFISLSPGKDGLLHISQIRRLVGGKRVEKVEDVLGVGQKVQVEIGEIDPRGKLSLHAVVEGEEAGSDESAAAEPADA
>NZ_CP041203.1|WP_147793839.1|469733_471059_-|insulinase-family-protein
MPLDLPLVAPGQPGSDLTAGQAGDGSVRRSVLPGGVRLLTEHVPGVRSASVGAWVGVGSRDESDGHHGSTHFLEHLLFKGTARRTAMDIAEAFDEVGGEANAATGKEHTCYYARVLDEDLPMAVDVIADMVTSARLDRDELETERGVILEELAMNDDDPSDVVHERFATVVLGEHALGRPIGGTPDTIRAVPRDAVWEHYRQHYRPDTLVVTAAGNVDHDALAAQVARALEEGGWDLAAGAAPAARRGAAGAQPTAGASDVTVRRTTEQGNVIVGGTGLTATDPRRFTLSVLNAVLGGGMSSRLFQEIREKRGLAYSTYSFASGHADTGVFGLYAGCAPAKIDEVTELMVAELERLADGGITDAELRRSVGQLSGGLVLGLEDSGSRMSRLGKSELVHGQLLSTQESLDRVRAVTAREVQELAADLAARPRSVVRVGPFGG
>NZ_CP041203.1|WP_168216843.1|468736_469438_-|hypothetical-protein
MHWVDPLTREAESIGSVLRGPRVVPGVVLPAGDAESWEVGARLAPWALSALHPAGFLVDEHRPLGEALGLDEPALAAGMRAAWDAAAGLGEGAAAAACVAVLEDALAAAVRRPVPAADRDAVDRVARYADAERGLVRPVDLAREVDRSLAGLHALLAAHVGLSPSAFLSTVRLSCAVRELGVDDRGDAVGVVRVLRAYADAGYPQREVERFTGLHALELRRAVRGMEDVLATA
>NZ_CP041203.1|WP_147793848.1|482421_482793_-|DUF448-domain-containing-protein
MTSRARLSSAGPEARLSSPSRRHPDTHAADDAAEVVVGPVRTCVGCRNTGPRSVLLRVVAATTDAGHPAVVVDVRRALPGRGAWLHPDPHCLELAERRRAFPRALRLAGPLDTSAVREHLGVV
>NZ_CP041203.1|WP_147793849.1|482789_483911_-|transcription-termination/antitermination-protein-NusA
MDIDMQALRLIEREREISLDVLVSAIEQALLSAYHRTPDAHADARVELDRRSGHVTVWARERTVVPAPDAPEPAEGEDGTVTAVPPTTTSLGPEFDDTPAGFGRIATATARQVIVQRLRDAEDDQVLGQFRGKEGEVLGGVIQQGRDPRVVLVDVGGTEAVLPAHEQVPTEKYVHGERIRALVLDVSRGSKGPQITLSRTHPNLVRKLFELEVPEIADGHVEITALAREAGHRTKMAVRSRVQGLGAKGACIGPLGARVRAVMAELHGEKIDIVDHSDDPAEMVAHALSPARVLSVTVVDPAARAARVVVPDYQLSLAIGKEGQNARLAAKLTGWRIDIRSDAQGADGGHEGTPETAGSPSADGDGSAAGRVG
>NZ_CP041203.1|WP_147793850.1|483913_484492_-|ribosome-maturation-factor-RimP
MPAPASAQRIRETIEPVVTAAGLWLEDVELGREGGQAVVRVVLDAPEDAEEQVDLDGVADVSRAVSAALDDLDGLPERYTLEVSSRGATAPLVARRHYARAIGRLVVLRLDDGGSLTGRLVDVERGATDAEDAVVVTPETPGVKGRPAKIGEPVRLPLARVREGRVEVELVRDKDDARGGDSAPDGPQGRED
>NZ_CP041203.1|WP_147793851.1|484752_485937_+|DUF4439-domain-containing-protein
MPRTASRRPSRPAPHPAPARSRRARALAGVLALGTAALLAGCGLRLETDPPAEPVPDATEQVRRDAVDDALALATAAEAATAGTDEGVAAVLGLVASTSEVQVEALGGVYESGLAEDPDATPSPTPSATDPAATPADVLALLGGAASEARADARATDDPGLARLLASVAASRAQLADRLAAALGAEAPAVDAEPEGGFTAGGSADGSGSGDGSAALPSASASGSATPAPSPTATGPADALGADLDRADALALVLAEDQAGYGFEVVAARLSDDARAQARSAAAAHRAAATAWAEAVGVAGTAEDPRRVAYELGGDLSSAEAVRTFAAGLLTDLAAVHADAVLDTGASTADRTAAVDGLRTSAVEALSWGATPTALPGLPAAAATASPTPTPPAG
>NZ_CP041203.1|WP_147793852.1|486150_487962_-|proline--tRNA-ligase
MLLRLSTLFVRTLREDPADAEVASHKLLVRAGYIRRAAPGIYTWLPLGLRVLGKVEQVVREEMAAAGAQEVHFPALLPREPYEATGRWTEYGPNLFRLQDRRENDYLLAPTHEEMFTLLVKDLYSSYKDLPLTLFQIQTKYRDEARPRAGLIRGREFIMKDAYSFDVDDAGLDASYAAQRAAYQRVFERLGLGYVIVAATSGAMGGSRSEEFLNPTAIGEDTFVRSPGGYAANVEAVTTVAPPALPYDDAPAAHVEDTPDTPTIDSLVAVSNERFPRADRPWTAADTLKNVVLALVQPTGERELLVVGLPGDREVDLKRLEAAVAPAEVEPAVEADFAAHPELVKGYIGPLALGPNREGLAADAEGRTAVRYLLDPRVVPGTRWITGANEPGKHVFDLVAGRDFAADGTVEAAEVRAGDEAPDGSGPLELARGIEIGHIFQLGRKYAQALGLTVLDQNGKSQVVTMGSYGIGVSRVLAALAEANHDDRGLAWPAGVAPAHVQIVATGKDAAVFEAAESLAQTLDARGIEVLYDDRLKVSPGVKFADAELLGVPLTVVVGRGLADGLVEVRPRVVVEGGPQAEQVPVAEAADRVAELVDALLAR
>NZ_CP041203.1|WP_147793853.1|488017_488923_+|Fpg/Nei-family-DNA-glycosylase
MPELPEVESLADFLRERAVGRTVAGVEVGAISALKTFRPAPTDLTGGTVVSAGRHGKWLDLGVAPPAAGGGVGDPLHLVFHLARAGWLRWSEQLPATPVRPGKSPLALRVRLDDGSGFDLTEAGTRKRLAVHVVADPAEVPQVATLGVEPLSEEFTPARLGELMAARNQQVKGLLRDQGTIAGIGNAYSDEILLVARTSPFALTRSFDADAVARLHAATVGVLREAVATAAGRPAAELKDAKRRGMRVHGRTGEACPGWDGVPCGDTVHEVSFADSSLQYCPTCQTGGKPLADRRMSRLLR
>NZ_CP041203.1|WP_147793854.1|489014_489320_+|hypothetical-protein
MPETTPRSDRPVRHSRAVQRPARHVRRARGGVGRRVARVAAATAGVLALGGTTGAVALYAQVQGSIDAADVDQFLGDDRPTAPARSRTPSTATPAGRSTSW
>NZ_CP041203.1|WP_147793855.1|489319_490198_+|LytR-family-transcriptional-regulator
MGTDLRDGENAEIAGDVDGMRSDTTMLVHLSADRSRVDVVSIPRDSLVDIPSCTLEDGSTTDPQSDAMFNDAFHIGGGETQNLAAAAACTRRTFEQNSGLRTDESIVVKMDGVRDVIDALGGVPMDLPEAMDSPKAGLHVPAGPQTFDGTTALQFLRARTGTGNGLEMGSDLARIERQQQLVDALAAQVQGAGLLSDPTTLMPVLTSVTRSLSISEGLADVRDLAGLALTLRDVDPATLQPVTVPVAEAPQDRYRVVWTSQAQDLWDRLAADQPLTDAAGAPTAGATTTTGA
>NZ_CP041203.1|WP_147796868.1|490213_491101_-|DUF4081-domain-containing-protein
MAAGRPPAGTDGARVLADADLPRALALCAQDPVAAVLATTRLEQAAVVGLRRSGGQLWGYEVDGALVALAWAGANLVPVVPDAAVRGAALDAFAAMGRAQGRRCSSVVGDAEAVLPLWERLAPAWGVVREVRAEQPSMVIDGDPVVAPDPAVRRSAPEEYDLVLPACVRMFTEEVGYSPIGGTGGAYEARVRSLVREGRSFVRIDPGEDGAPQVVFKAELGAVAGGVAQVQGVWVEPTRRGERLSEAGMAAVVAATRRDVAPTVSLYANHYNERALAAYRAVGFRRVGTYATVLF
>NZ_CP041203.1|WP_147793856.1|491127_492288_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MSTPISLGMPEAPPPVLAPRRPTRKIRVGKVEVGGDAPVSVQSMTTTLTSDVNATLQQIAELTAAGCDIVRVAVPTQDDADALPAIARKSQIPVVADIHFQPRYVFAAIDAGCAAVRVNPGNIRKFDDQVKEIARAAQDAGVSLRIGVNAGSLDPRLLAKHGKATPEALVESAVWEASLFEEHDFHDFKISVKHNDPVVMVRAYELLSERGDWPLHLGVTEAGPAFQGTIKSATAFGALLSKGIGDTIRVSLSAPPVEEVKVGIQILQSLNLRPRKLEIVSCPSCGRAQVDVYTLAERVTAGLEGLEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVRGEVVRTVPESAIVETLIDEAMRIAEGMEPAGDGPGGPVVTVG

Crispr_ID: NZ_CP041203_3

• CRISPR_ID: NZ_CP041203_3
• CRISPR_location: 1092011-1092087
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041203_3

Consensus_repeat	Method
GTGATCGAGACGCACGACGCCGG	CRISPRCasFinder

spacers of NZ_CP041203_3

>3.1|1092034|31|NZ_CP041203|CRISPRCasFinder
TCGCCCGGCCGAAGCGGCGGACGACACGGCC

CRISPR arrays and Neighbor proteins around NZ_CP041203_3

CRISPR arrays

The CRISPR arrays of NZ_CP041203_3

>merge|NZ_CP041203|3|1092011-1092087|CRISPRCasFinder
GTGATCGAGACGCACGACGCCGGTCGCCCGGCCGAAGCGGCGGACGACACGGCCGTCATCGAGACGCACGACGCCGG

>NZ_CP041203|3|3|1092011-1092087|CRISPRCasFinder
GTGATCGAGACGCACGACGCCGG	TCGCCCGGCCGAAGCGGCGGACGACACGGCC
GTCATCGAGACGCACGACGCCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041203.1|WP_147794289.1|1090295_1091822_+|PspC-domain-containing-protein	unknown	unknown	gnl|CDD|377200
NZ_CP041203.1|WP_147794283.1|1083616_1086064_-|glycoside-hydrolase	unknown	unknown	gnl|CDD|269881
NZ_CP041203.1|WP_147796927.1|1096998_1098378_+|acyltransferase-family-protein	unknown	unknown	gnl|CDD|224748
NZ_CP041203.1|WP_147794294.1|1098387_1098795_-|DUF3817-domain-containing-protein	unknown	unknown	gnl|CDD|378962
NZ_CP041203.1|WP_147796928.1|1099004_1100882_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224055
NZ_CP041203.1|WP_147794280.1|1079592_1080156_+|hypothetical-protein	unknown	unknown	gnl|CDD|214361
NZ_CP041203.1|WP_147794285.1|1087205_1087556_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147796929.1|1102636_1103422_-|SURF1-family-protein	unknown	unknown	gnl|CDD|119401
NZ_CP041203.1|WP_147794284.1|1086143_1087184_+|substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|224525
NZ_CP041203.1|WP_147794293.1|1094918_1096520_-|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl|CDD|234614
NZ_CP041203.1|WP_147794286.1|1087657_1088179_+|hypothetical-protein	unknown	unknown	gnl|CDD|237030
NZ_CP041203.1|WP_147794296.1|1103769_1106259_+|phosphoketolase	unknown	unknown	gnl|CDD|235379
NZ_CP041203.1|WP_147794295.1|1100862_1102596_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224055
NZ_CP041203.1|WP_147794291.1|1092887_1093835_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl|CDD|379128
NZ_CP041203.1|WP_147794281.1|1080251_1080917_-|AIM24-family-protein	unknown	unknown	gnl|CDD|376704
NZ_CP041203.1|WP_147794282.1|1081002_1083573_-|DNA-helicase-PcrA	unknown	unknown	gnl|CDD|273429
NZ_CP041203.1|WP_147796926.1|1096595_1097000_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197716
NZ_CP041203.1|WP_147794292.1|1094101_1094605_-|aromatic-ring-opening-dioxygenase-LigA	unknown	unknown	unknown
NZ_CP041203.1|WP_147794287.1|1088216_1088876_-|response-regulator	unknown	unknown	gnl|CDD|225107
NZ_CP041203.1|WP_147794288.1|1088872_1090159_-|PspC-domain-containing-protein	unknown	unknown	gnl|CDD|226951

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041203.1|WP_147794289.1|1090295_1091822_+|PspC-domain-containing-protein	gnl|CDD|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	6.25615e-12
NZ_CP041203.1|WP_147794283.1|1083616_1086064_-|glycoside-hydrolase	gnl|CDD|269881	cd06595, GH31_u1, glycosyl hydrolase family 31 (GH31); uncharacterized subgroup. This family represents an uncharacterized GH31 enzyme subgroup found in bacteria and eukaryotes. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	2.04216e-176
NZ_CP041203.1|WP_147796927.1|1096998_1098378_+|acyltransferase-family-protein	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.09361e-36
NZ_CP041203.1|WP_147794294.1|1098387_1098795_-|DUF3817-domain-containing-protein	gnl|CDD|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	1.47231e-26
NZ_CP041203.1|WP_147794280.1|1079592_1080156_+|hypothetical-protein	gnl|CDD|214361	CHL00095, clpC, Clp protease ATP binding subunit.	1.54903e-11
NZ_CP041203.1|WP_147796929.1|1102636_1103422_-|SURF1-family-protein	gnl|CDD|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	8.88383e-33
NZ_CP041203.1|WP_147794284.1|1086143_1087184_+|substrate-binding-domain-containing-protein	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.65926e-84
NZ_CP041203.1|WP_147794293.1|1094918_1096520_-|glutamine-hydrolyzing-GMP-synthase	gnl|CDD|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP041203.1|WP_147794286.1|1087657_1088179_+|hypothetical-protein	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.62188e-08
NZ_CP041203.1|WP_147794296.1|1103769_1106259_+|phosphoketolase	gnl|CDD|235379	PRK05261, PRK05261, phosphoketolase.	0
NZ_CP041203.1|WP_147794295.1|1100862_1102596_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.13306e-130
NZ_CP041203.1|WP_147794291.1|1092887_1093835_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl|CDD|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00371501
NZ_CP041203.1|WP_147794281.1|1080251_1080917_-|AIM24-family-protein	gnl|CDD|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.9356e-35
NZ_CP041203.1|WP_147794282.1|1081002_1083573_-|DNA-helicase-PcrA	gnl|CDD|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041203.1|WP_147796926.1|1096595_1097000_-|MerR-family-transcriptional-regulator	gnl|CDD|197716	smart00422, HTH_MERR, helix_turn_helix, mercury resistance.	2.43676e-24
NZ_CP041203.1|WP_147796928.1|1099004_1100882_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.40167e-74
NZ_CP041203.1|WP_147794287.1|1088216_1088876_-|response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.41317e-53
NZ_CP041203.1|WP_147794288.1|1088872_1090159_-|PspC-domain-containing-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.26379e-25

Protein sequences

>NZ_CP041203.1|WP_147794289.1|1090295_1091822_+|PspC-domain-containing-protein
MTNDSADRGSGTVPPSGSGAPGPVPPPVPPTGGHAMAGFFAAIRRAGISRSQDRWVGGVAGGLATRFGIDPLLARGLVGVTLLMGFGFVLYGLAWALLPEESDGRIHLEETIRGNFDVALLGAIALVVVGFSAGDWWFSWGPFRSGWFSGFAWFAAVVAGIVVLVTALRRGAGRPAAHRVVAAPVPGRTASDDQPQHPAGPAGRRRPAPGGALRGRRTGRRERLGPGRRPVRLRPRRAARRPAALRLGPGRLRRAAPPGPAQPAPSPPSRGWTPPPPAPPTPPRPPRPPRRGPGAAVTGVVVALILIGLAALLAADRAGVYDGPVAAVVVGGGLALVGLAIIVSGLRGRTAGGLTALAIVGIVVAGPAAVADDARWGDWDRWDNGSGPVQSIDTAVTSRAVAERGYSFGVGDATVDLTGVPLTDDTLVVPISGGLGDVTVVVPEGAAVVADVSSGAGNVTWKVDGKNERSDGVGHDRTFTSEAMSGREDAEIELTVEVGVGSITIEED
>NZ_CP041203.1|WP_147794288.1|1088872_1090159_-|PspC-domain-containing-protein
MESLSRLPLRRPERGRVVGGVAAGLALHLGVPVRLVRVLFALLTPVGGIGVALYVFWWVTIPVGDPAAAAGAGRPAELSRLHRPLERDAVQRLRRLPWTEIAVGVALLAGAVAMLLARAGTDVVGNWVVPVLLLVAGAALAWSQLDAVQRGRRGGGRGPVSVLRLVGGLVIAGVGVLLLVGQEATPGTLVQSTVAAVAVLGGVALVLAPWWLRLVRELGDERAARARESERADIAAHLHDSVLQTLALIRARADDPTEVARMARAQERELRAWLYDDRPAPGTSVAAVLAAIVAEIEDTRTGPDGEAVTIETVVVGDTEPDASTDALLQATREALLNAVRHGRPPVSLYLEAGPGEVEVFVRDRGDGFDPDAVPDDRFGVRESILGRVRRRGGTASVVCKDGGGTEVRLRMPLVRERATADDERTMQG
>NZ_CP041203.1|WP_147794287.1|1088216_1088876_-|response-regulator
MNDAPVDVVLVDDHLMFRAGVKASLDDRVHVVGEAATVDEAIQVVRATQPPVVLLDVHLPGGDGGGGAEVIRACTDLLGGTRFLALSVSDAAEDVVAVIRAGARGYVTKAISGPDLCDAVLRVAGDDAVFSPRLAGFVLDAFGAAAGDVATGDDELDRLSAREREVMRLIARGYSYREVAGELFISIKTVETHVSAVLRKLQLSSRHELTRWAAARRLL
>NZ_CP041203.1|WP_147794286.1|1087657_1088179_+|hypothetical-protein
MTTPEHPNPGESSPGASQPTPATHPAAGAYPPPAAQPTPGAYPAPGAYPTPAAPQPAAGYPDPATPPGPYPVAPQPAPSPTLAIVGLVTALIPCTALVGLVISIVVLVRGRRGGVPGRGLAVAGVIVGALWLVAGVVALALGAFGVASLVETCADLGNGVHYVDGVRYECNIG
>NZ_CP041203.1|WP_147794285.1|1087205_1087556_-|hypothetical-protein
MSVVYGLLVVLHLVGWAIVLGGCLVTLRQPAFPKGALHGALTALVTGIVMVGLRSAEVAGLEPPDNAKIGVKLLVALVVTGLVWYGTRKPEKVTRGLVGATLGLTLVNILVAVLWR
>NZ_CP041203.1|WP_147794284.1|1086143_1087184_+|substrate-binding-domain-containing-protein
MDRVTLKDIAREVGVSVMTVSNVVNGRAERVSPATAARVERAVADLGYVPSAAARSLVARRSRLVGLLLPGRPDGVTLLGSPHDVAVTGALEAALRGRDHHLMLRGVGDADDVRDSVRRWGLDGVVVMGFTDDALAALDLPGTLRAVLVDAEGGPADAGPRHARVRSDDRAGGHLAGTHLAGFGHRRLLLCGPVDAASRVVAERLAGFRAAAAEAGLPPEAVRTAHARTTYDEGVVLGGRLAADVRAGSVTAVFATADVLAAGVVRGLADAGLRVPDDVSVLGYDDAELARQVTPRLSTVAQDTAGKGRLAAELLLGLVTGDDAAPRSATVPVALVARESTGPAPR
>NZ_CP041203.1|WP_147794283.1|1083616_1086064_-|glycoside-hydrolase
MTAPTQPQPDRPRQPGGPLALATGPAPDGTADPRAVVQGDRWRITVLDEGLVRLERAEDGRFEDRPSTFARHRALPVPEFRVVDRGHVVEVVTSRLRVVYDRGPFSTAGLSVEVTGGVSAYHSTWRYGQPAEGLGGTARTLDEADGRVPLEGGVVSRQGYAVLDDSRSMVFEADGWVAPRDGSRQDLYVFGYAHDHAEALRAFHAVSGPVPVLPRWALGTWWSRFHRYTAEGYREVVERFAAEQIPLSVSVLDMDWHVTEVDPALGSGWTGYTWNRDLFPDPPALLSWLHDRGLRVTLNVHPADGVRAHEDAYAAMCAALGREPDGDPIAFDVTDREFLAAYFSVLHRGLERDGVDFWWVDWQQGAHSRVAGIDPLWMLNHFHYVDSARDGRRGLTFSRYAGPGSHRYPVGFSGDTVITWDSLAFQPEFTATAANIGYGWWSHDIGGHYFGVRDEELATRWVQLGTFSPVLRLHSSDNPFTSKEPWSFGPHARQVQTAFLRLRHRLVPYLHTMNHRAAAESQALVRPLYHAWPDRPEAYDAPQQFLFGSELLVAPVTTPTDPVTRASAVRAWLPPGTWVDVLTGAVYDGDRLLDLHRTLDSIPVLARPGAVVPLDGAEVPGNDPVNPAHLELLVVPGADGAFTLVEDDGAGDGTDPAGIARTPITWADAPGTLAVGPVAGATACVPAERDWTLTLVTAGATEDAAGAVRATVDGAPVPAEVRVTDDGRPRVEVRGVPAGARLEVTCGTVPLAGPEPDAEVLRVLRGAWTENALLTRALAAATSDRPLHVRLSHLEALDLPASLLSALREVLLARG
>NZ_CP041203.1|WP_147794282.1|1081002_1083573_-|DNA-helicase-PcrA
MTSLFENLPLPGLALSDLGRLPAAVPPRGDLPGDGSGADAPRDGDAPRDRGRAPSIDADALLVGLNPQQRAAVLHHGGPLLIVAGAGSGKTRVLTHRIAHLLATRQARAGEILAITFTNKAAAEMRERVASLVGPSARMMWVSTFHSACVRILRREATTLGLRQSFSIYDSADSQRLLSLVARELDLDPKKYPPKALQSKISNLKDELVDPDAFAATAGGSNDFDQALAQVYTRYQQRLRQANALDFDDLIMTTVNLLQAFPAVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELAGVGAADPGADAAVPRGELTVVGDADQSIYAFRGASIRNIMEFEADYPDATTILLEQNYRSTQTILSAANAVISKNPGRKPKRLWTDSGSGPKIVAYVADNEHEEARFVAEEIDRLGDSDGVRPGDVAIFYRANAQSRALEEVLIRVGLPYKVVGGTRFYERREIKDAVAYLRAIANPDDDVNLRRILNVPKRGLGDRSEAMVAGYAERERVSFGTALERLEEVPGLGTRAITGLRAFAEMMADLRALTESGAGPAEILSVVLDRSGYLAELRASEDPQDQTRVENLAELHAVASEFEQSDPEGDLADFLERVSLVADSDQIPSDDGGDDEGGEPKPDQGVITLMTLHTAKGLEFPVVFLTGMEDGTFPHMRSLADTDQLAEERRLAYVGLTRARQRLYISRAAVRTAWGVPNEFPPSRFLDDLPEDLIDWRRRESSNDRLRGPGGFLGGRSGYASGGGYGERSSSGSGSTQSWKKSSAASRAGEPPRKAPGSGGATFGSATPRPDAAIPTLTVGDKVTHDAYGLGTVVAVEGGGPNAVAKVDFGTEGTKRLLLRYSPVTKL
>NZ_CP041203.1|WP_147794281.1|1080251_1080917_-|AIM24-family-protein
MRSPIFDQANAEVQTAERFVLQSTKMLKVTLGPDVLAAKGAMVAHQGQVQFHHESSGSLARFVKRAMSADDQPLMRVSGPGEVFFARAAEHVFLLQLEGDAISVGGSSLLAFDAALQWDMHRTKGAGMMTGGFWNTLIQGHGTVALTSHGQPMILDCSQQPTFVDPNAAVCWSANLTPGVVSSMNVSSLLRGGTGEAFQYAFHGPGFVVVQPSEGYPVPTA
>NZ_CP041203.1|WP_147794280.1|1079592_1080156_+|hypothetical-protein
MFERFTAGARAAVVQSQEIARDLGDARISPAHLVVAVASVPDPAAEALAAQGADRAALLDAFDGDGLDASALAALGIDLDAVRRRADTVFGAGALDRADRARRPASGGRRGIAAGHVPFTRDAKKTLEVALREAIRLGHKRIEAGHVLLAVVRLSDTDGYALLRRAGVDPAALAADVTARLAAAAAA
>NZ_CP041203.1|WP_147794291.1|1092887_1093835_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MGSARALAEPRAPVLGPVTADDVRTSGLAGEDLRRAVRAGAFVRVRHGAYVPAATWESADRAERHRLLVRAAARSLAAPVFGYESAAAMWRLPLLEGWPSDVQVLVLDARGTPSTRGVRRHRLATLPDVRAVDGVTVTTLARTVVDLSRTGSFARGLALADDALHRHRVDPDDLARELAAAGSGRGVRAARRVLAEADAGAESPGESLSRARMIELDLPRASLQREVRDSSGLVGRVDFLWEELGVVGEFDGRLKYRVDGVGDRATVEDRVWAEKRREDRIRATGLRVVRWTWRDALDAGRLARVLATAGVRPAP
>NZ_CP041203.1|WP_147794292.1|1094101_1094605_-|aromatic-ring-opening-dioxygenase-LigA
MATVAATGGSKAARVIGIITAIAGIVLIIAGGVTWGSVSSHLADENITVSEDAANFGGQAVTSPWTAFAQADIIQHHALEATGGKTYAELEQDDPLRDVAMNASFLRASLFTSVVAFGVAALVMGLGVLFILVGWALFALGGRKAVATTDTTRPAGTAPGVEENVRA
>NZ_CP041203.1|WP_147794293.1|1094918_1096520_-|glutamine-hydrolyzing-GMP-synthase
MTDAPDTPAPPPTDSPRPVLVVDFGAQYAQLIARRVREASVYSEIVPHTASVQDMLAKDPSAIILSGGPSSVYAEGAPFVDPALFEAGVPVLGICYGFQAMAKALGGEVAQTGNREYGGTPVEVVTNGTVLADSPEQQTVWMSHGDAVHAAPEGFEVLATSAGSPVAAFEDRARRLFGVQWHPEVKHSPLGQRTLEHFLYEGAGLAPDWNPGNVIADQVERIRAQVGSARVICGLSGGVDSSVAAALVQKAVGDQLTCVFVDHGLLRTGEAEQVEQDFVASTGVNLKVVDARERFLHALAGHTDPETKRKIIGREFIRVFEDAAREVVEEAGAHGDEVKFLVQGTLYPDVVESGGGEGAANIKSHHNVGGLPDDLQFELVEPLRALFKDEVRAVGLELGVPEAIVWRQPFPGPGLGIRIIGEVTQERLDVLRAADVIAREELTRAGLDRDIWQCPVVLLADVRSVGVQGDGRTYGHPVVLRPVSSEDAMTADWTRLPYDVLATISTRITNEVPEVNRVVLDVTSKPPGTIEWE
>NZ_CP041203.1|WP_147796926.1|1096595_1097000_-|MerR-family-transcriptional-regulator
MQIGEVAERTGLSLRTIRYYGEVGLVRPSARTHGGFRLYTEPDIARLELIKRMKPLDFSLDEMGDLLGVLDKINEPGIDAEEHEALLERLRMYRLAAEERSRALREQLAVAEDFHESLRKEISRQRRIGERSGS
>NZ_CP041203.1|WP_147796927.1|1096998_1098378_+|acyltransferase-family-protein
MWCRLTATSFRTGRRQHSHAGSAPAGPTSRRRRASRPGRASPPSCHVSVGCPCEDPVPVVTRTAQHPSQTSQSGHTFRYVRDDAPASAPTTTTGTGLPGTGLASPVPASPAPGAPARPARLPGLDALRGLAVGLVLLNHAAPDVFGAAGVLGVTVFFALSGWLITGVLMRDLDRGGRIRFGRFYGHRLLRLYPPLLLMLAGYVVVEGAFDLLGQAHLVPETLVAALTYTINIPGLPHGSESVYHFWTLAAEEQFYLVWPLVLAWAWRRGWLRATTGVAVAAALAACIVTLLLVVPDVARVYALPTSWGAALLIGCAGYLGRTALAARLPQTVRARRAVQAGIVVALLGGTLLTGLAGHTAWYLLGVPAVAVATVVLISYVGGWRTLPSRWLRPAVALGTVSYAAYLWNGAIVRWLGHPDDLGGIALGIGLTLLAATASWWLVERPVARWRARRPAAATA
>NZ_CP041203.1|WP_147794294.1|1098387_1098795_-|DUF3817-domain-containing-protein
MTEPTGQPTPAPAAPAARPAPVHPAAAGRLTRYRVMAFVTGTMLLVLCLEMVLKYVFHANGVDPATGSPLPVLGTWIAIVHGWIYVVYLFTVVQLWSAMRWSLGRLVTMALAGVVPVMSFILERRVHADAQARLG
>NZ_CP041203.1|WP_147796928.1|1099004_1100882_+|ATP-binding-cassette-domain-containing-protein
MLWQGRRQLGVLAGATAVAVVGNVAAALLPWQLGRVVDDGLDDGLGAALWLGCLGVFALGMVQVGTNVWGHRLDVENWLRAAFASSQQVGHHVTRTGDAVTDELPTGEVVATVASDALRMGEVYAILPRLVGGIAAYLVLGAVLLSTSVPLGLLVLLGLPVVVAVLSLLVRPLQKRQAEQREATGRLTTLGADTVSGLRILRGIGGEDVFAGRYRAQSQQVRAAGVRVSQTQSLLDALQTLLPGLFLAVVVWAGARLAISGDITPGQLVAFYGFAAFLTQPLWTASEAIRVVTRAVVGARKIIRVLSVRVAGSDDPVTPAPSPAAGEPLVDEGSGLVVRPGRITALVSADPDETARLALRLGRLGPARHGGADDEDLDESGQDGTLVDARAGAADDPGLSRVRWGRALLTELGLAEVRDRVVVAESTPHLFTGLLADELDVRGGADREALLEAMRVADAGDVLDSVPGGLDGEVEEKGRSLSGGQRQRVALARALLTGAEVLVLIEPTSAVDAHTEARIARRLADARRGATTVVVTASPLVLDVVDEVALVAGGRVVATGTHRDLVTARDATGAAYRAVVSRAEDDHADAPAGTPAAEGATPTATTTTTTTATTDEEDRREAARR
>NZ_CP041203.1|WP_147794295.1|1100862_1102596_+|ATP-binding-cassette-domain-containing-protein
MKLPVADAPALRRHTAALLRRHRRGLGVVVLLHVLAATAGLAGPWLLGRLVDAVVSGTTTSVVDRTVLVLVVAVLAQTVLIRYAQRAAMVLGESVFAELREEFVATVTRLPLSTVERAGTGDLVARTTTDIDRVQYTVRFGVPRLLVTAATIVLTLVAAFATNALVAVGLLAGVPLLLAVTRWYLRRAAPAYLRESAAYAALNGTITESAEGARTVDALGLGARRRARVDADLREAFAAESATLNLRSVLFPGVDTSFVLPVVAVLAWGAYLISTGHATIGAVTTIALYATQIIHPIGELIFWLDEIQVGATSLARILGVADVAPDRTARDARPAGSDVTARAVRYAYREGHDVLHGIDLGLRPGERLAVVGPSGAGKSTLGRMLAGIHPPTGGSVTVGEVPLVDLPLDELRGHVALVTQEHHVFVGPLADNLRLADPEADDAALERALRAVDAWDWVRALPEGLATPVGSGGTALTPAQAQQIALARLVLLDPHTLVLDEATSLLDPRAARHLERSLSAVLEGRTVVAIAHRLHTAHDADRVAVVDAGRISEIGPHDELVAAGGDYASLWHSWQRE
>NZ_CP041203.1|WP_147796929.1|1102636_1103422_-|SURF1-family-protein
MIGLLVLFLAVAAVCGRLGAWQLERAEVRGAAAQAAKLAEVEAQEPVPIAEVLLPQTTFEGALVGRRVEVTGEEYEADGQLLVRDRALDGRTGSLVLTPLRVASDDPAVDGAVLPVVRGWVAGDDPAAPGLEVPTGTVTVTGYLQASEDSGAEHGTQDAGTTDSISSAELLGVWGGPIWTGYAVLTSSQPAQDVTIELLPPPTRSGTGLNIQNLGYAAQWFVFGGFAVFLWVRLLKDEVLRLSGAFDPEEEPAPGDRTPST
>NZ_CP041203.1|WP_147794296.1|1103769_1106259_+|phosphoketolase
MTTTTSRPETWRAGSGQPVSDETLRRIDAWWRTANYLSVGQIYLLANPLLREPLTKDHVKPRLLGHWGTTPGLNFLYAHLNRVIAERQQSTLYLTGPGHGGPGLVASAYLDGTYSEVYSDITPDEEGVRRLFRQFSFPGGIPSHVAPETPGSIHEGGELGYALSHAYGAAFDNPDLLVAAVVGDGEAETGPLATSWHSNKFIDPAKDGVVLPILHLNGYKIANPTVLARIPEEELLDLMRGYGHKPHLFVGGFDGEDHAAVHARFAELLDVVLDEIAEIKARAAAGDESRPAWPMIVFKTPKGWTCPPVIDDKQVENSWRSHQVPLASARDTDEHLQVLEGWLKSYRPEELFEADGSVKADITALSPGGTLRMSDNPHANGGLLLKDLRLPDFRDFAVDVPVPGGSISEATRELGKYLTEVIRRNPDNFRIFGPDETASNRLQAVFDVTNKQWNAEYLPTDVDDHLARMGRVVEMLSEHQCQGWLEGYLLTGRHGLITSYEAFIHIVDSMFNQHAKWLKVTNHIPWRRPIASLNYLLSSHVWRQDHNGFSHQDPGFIDHVVNKKAEIVRVYLPPDANTLLSTYDHCLRSRQYVNVVVSGKQPAPNFLSMDEAVAHCTRGLGIWEWAGTEVEGEDPDVVLGCAGDVPTLEVLAAAHILREELPDLKVRVVNVVDLMRLQDEREHPHGLSDRDFNTLFTTDKPIVFAYHGYPWLIHRLTYRRKGHKNLHVRGYKEEGTTTTPFDMVMLNDLDRYHLVIDVIDQVPSLGSKYAGLRQRMVDARLRAHDYTRAHGEDLPEVRDWVWPDAGETGTEEGGPQQSTATLSTGGDNE

Crispr_ID: NZ_CP041203_4

• CRISPR_ID: NZ_CP041203_4
• CRISPR_location: 3240986-3241090
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041203_4

Consensus_repeat	Method
CCGTACGCCGCGCCGCGGCCGTCC	CRISPRCasFinder

spacers of NZ_CP041203_4

>4.1|3241010|57|NZ_CP041203|CRISPRCasFinder
GCGGACCCGTACGCCGCGCCGCGGCCGTCCGGCGCAGCGCCGGCCGGGCCTCCGCAG

CRISPR arrays and Neighbor proteins around NZ_CP041203_4

CRISPR arrays

The CRISPR arrays of NZ_CP041203_4

>merge|NZ_CP041203|4|3240986-3241090|CRISPRCasFinder
CCGTCCGCGACGCCGGCGCCCGCCGCGGACCCGTACGCCGCGCCGCGGCCGTCCGGCGCAGCGCCGGCCGGGCCTCCGCAGCCGTACGCCGCGCCGCGGCCGTAC

>NZ_CP041203|4|4|3240986-3241090|CRISPRCasFinder
CCGTCCGCGACGCCGGCGCCCGCC	GCGGACCCGTACGCCGCGCCGCGGCCGTCCGGCGCAGCGCCGGCCGGGCCTCCGCAG
CCGTACGCCGCGCCGCGGCCGTAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041203.1|WP_147795863.1|3242941_3243964_+|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NZ_CP041203.1|WP_147795858.1|3233828_3234773_+|dihydropteroate-synthase	unknown	unknown	gnl|CDD|273657
NZ_CP041203.1|WP_147795864.1|3243960_3244500_+|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl|CDD|379265
NZ_CP041203.1|WP_147795866.1|3245833_3246907_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795867.1|3247029_3247209_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795857.1|3232987_3233839_+|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl|CDD|224527
NZ_CP041203.1|WP_147795856.1|3231802_3232906_+|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl|CDD|237264
NZ_CP041203.1|WP_082812748.1|3236244_3236412_+|DUF3117-domain-containing-protein	unknown	unknown	gnl|CDD|371461
NZ_CP041203.1|WP_147795861.1|3239669_3240785_+|zf-HC2-domain-containing-protein	unknown	unknown	gnl|CDD|379219
NZ_CP041203.1|WP_147795855.1|3230789_3231743_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl|CDD|274635
NZ_CP041203.1|WP_147795865.1|3244594_3245632_+|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl|CDD|377085
NZ_CP041203.1|WP_147795854.1|3229861_3230785_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795860.1|3238119_3238752_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|226607
NZ_CP041203.1|WP_147795869.1|3250030_3250480_-|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl|CDD|239580
NZ_CP041203.1|WP_147795859.1|3234769_3236026_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795871.1|3251133_3252288_+|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl|CDD|133003
NZ_CP041203.1|WP_147797141.1|3236446_3238048_+|leucyl-aminopeptidase-family-protein	unknown	unknown	gnl|CDD|238247
NZ_CP041203.1|WP_147795868.1|3248145_3249984_-|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl|CDD|236185
NZ_CP041203.1|WP_147795872.1|3252321_3253560_+|amidohydrolase	unknown	unknown	gnl|CDD|349936
NZ_CP041203.1|WP_147795870.1|3250479_3250905_-|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl|CDD|239581

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041203.1|WP_147795863.1|3242941_3243964_+|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP041203.1|WP_147795858.1|3233828_3234773_+|dihydropteroate-synthase	gnl|CDD|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.96269e-83
NZ_CP041203.1|WP_147795864.1|3243960_3244500_+|2'-5'-RNA-ligase-family-protein	gnl|CDD|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	7.51565e-26
NZ_CP041203.1|WP_147795871.1|3251133_3252288_+|mannose-1-phosphate-guanylyltransferase	gnl|CDD|133003	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.	1.05692e-109
NZ_CP041203.1|WP_147795857.1|3232987_3233839_+|TIGR00730-family-Rossman-fold-protein	gnl|CDD|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.71589e-56
NZ_CP041203.1|WP_147795856.1|3231802_3232906_+|succinyl-diaminopimelate-desuccinylase	gnl|CDD|237264	PRK13007, PRK13007, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP041203.1|WP_082812748.1|3236244_3236412_+|DUF3117-domain-containing-protein	gnl|CDD|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.93451e-24
NZ_CP041203.1|WP_147795861.1|3239669_3240785_+|zf-HC2-domain-containing-protein	gnl|CDD|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	3.24141e-05
NZ_CP041203.1|WP_147795855.1|3230789_3231743_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl|CDD|274635	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. This model represents a clade of the enzyme specific to Actinobacteria. Alternate name: tetrahydrodipicolinate N-succinyltransferase.	1.38383e-179
NZ_CP041203.1|WP_147795865.1|3244594_3245632_+|YihY/virulence-factor-BrkB-family-protein	gnl|CDD|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	2.41198e-23
NZ_CP041203.1|WP_147795860.1|3238119_3238752_-|methyltransferase-domain-containing-protein	gnl|CDD|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	8.17503e-52
NZ_CP041203.1|WP_147795869.1|3250030_3250480_-|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl|CDD|239580	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	4.87392e-39
NZ_CP041203.1|WP_147795870.1|3250479_3250905_-|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl|CDD|239581	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	2.13397e-44
NZ_CP041203.1|WP_147797141.1|3236446_3238048_+|leucyl-aminopeptidase-family-protein	gnl|CDD|238247	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.	4.53188e-149
NZ_CP041203.1|WP_147795868.1|3248145_3249984_-|succinate-dehydrogenase-flavoprotein-subunit	gnl|CDD|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP041203.1|WP_147795872.1|3252321_3253560_+|amidohydrolase	gnl|CDD|349936	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of uncharacterized bacterial proteins predicted as putative amidohydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	3.2493e-178

Protein sequences

>NZ_CP041203.1|WP_147795861.1|3239669_3240785_+|zf-HC2-domain-containing-protein
MNGHLGDRVSALVDGQLGPAAAERALAHVAGCPRCAADLAAARAARRVLSDCDDVRPAGDLTARLLALGGAPVPTGVDAGARAAARPMDPFVPPSAVRGAAAFTGAAPSAGSGIGGLLGRGPFGEGVLGSRSVLGGSVLGSRRLLGDRPVVGSAPGATAAATRRGLRAAVGSITGLGVVAVGLFLLGDRPTVAPVTESAEALQLLGDASTVAVPVVAGAGGGSTSGPAAGASTQDYLDWMRAEGWTCPEQVPDGWAVTAVHLRDEGSTLEVDLSGPTGDVVVTEQHGRLDVSALTAAEPVDVEGRTVYLLSAEPWHAAWQSGDTVVEVVSSRTGPGAAAVVAQFPEGQFDAGLSARLTRGWDTFAAAVHLP
>NZ_CP041203.1|WP_147795860.1|3238119_3238752_-|methyltransferase-domain-containing-protein
MATDKAASWVYAEGFVPEDDTLLRARDRAGELGCTPVQPGTGAALTVLAAASRARAVVEVGTGAGVSGLHLLRGMPSDGVLTTIDVEVEHQRAAKQAFAEEGVRAARTRTISGRALDVLPRLTDGAYDLVFVDADIESYPAYVERAVRLLRPGGVLAVDDALWHDRVADPARRDEATTLVRETGRLVREDDRLMPAMLPVGDGLLVAVRR
>NZ_CP041203.1|WP_147797141.1|3236446_3238048_+|leucyl-aminopeptidase-family-protein
MTPPAVRIGRAVPAVGLAAGSLATSGLLLEAGVDAVAVPVAPAAPDDTDLQPRRGTADAAARYGIDLAELAERAGLTGTAGEAWTLLLPRPVGSATGDLPWAGLPRRLVLVGVGDGTPDELRRAGAALARATRGLRRVLTTVATEPGADGPPAVRAFAEGYLLAAYRVQRIGAPASPKEAPAEELVVVGREGVRVQAALDEAVRGATATWLVRDLANTPSSTKDPAWVADRASELARAAGLRVEVLGPRELEAQGFGGILAVGRGSASTPRLVTVTYDPAGPAGGPARRAQHVVVVGKGITYDTGGLSIKPREAMVPMKTDMAGAAVALATVLGAAAAELPHRVTAVLPLAENHFGAASYRPGDVLRMWGGRTVEIANTDAEGRLVLGDALAWADATLDPDVLVDVATLTGAASLGLGKQHGALYATDARLTAALEAAGAESGEPVWPMPLVEDYADAVRSTVADLRHVPQDAKYGGGSITAALFLREFVGARTWAHLDIAGPARSTADKHEVTEGATGFGARLLLRWLAALR
>NZ_CP041203.1|WP_082812748.1|3236244_3236412_+|DUF3117-domain-containing-protein
MAAMKPRTGDGPLEVTKEGRGIVMRVPLEGGGRLVVELNATEAQELGEALTSVVS
>NZ_CP041203.1|WP_147795859.1|3234769_3236026_+|hypothetical-protein
MTAGPGSAAAQDAAPARRALDPRTWPWWVQALAVYAAARAFSAVVLLVVATRQVASGWTGASPGYADYTGLMWDATWYRTIAEGGYPAQLPVGADGLVQQNAWAFFPLYPFLVRALMTVTGGSWAVVAPTVSLLAGAGAVLVVHRVVVRGAPRAVAARPGLPLATVLLVSVFPTSVVLQVGYTESLALLLVAASLLAVVTRRYGWACAAVLALGFTRAVALPMAVVVAVHALVRWREWRAAGERPRGRDLAGIGAVGLAAVVSGFAWLAICGWVTGVPDAYLQTQEAWRGAATTAPFAGWSYVPAFWFGDAWPLVVLAAGVFVVACLVTPSAWRLGRELHAWSAAYLLYLAAAVEPGSSLARFLLLAFPLGAATAGLVTRPRAARWAWTGAVAVLMLVLQVVWVWHIWRFVPPAGWPP
>NZ_CP041203.1|WP_147795858.1|3233828_3234773_+|dihydropteroate-synthase
MGAEPAGSAGVPAPGAPLLLRDRWFGPGRPVVMAVVNRTPDSFYAAARYDDAGADAAVARAEEEGADLVDLGGVRAGRGPAVDVAEEIARVVPLVERVRRRHPDLLVSVDTWRAEVARAAADAGADLLNDTWAGHDPALVEVAAERGLGVVCSHTGGLPPRTDPLRVSYPLPDDAPAGTDPRDGVLLDVLATLRAAAARAVDLGVHPASVLVDPTHDFGKSTWHSLHLVRRTAALTALGHPVLVALSRKDFVGETLDLPPEDRLEGTLAATSVAAWLGARVFRAHDVRATRRTVDMVAALRGDAPPARAVRGLA
>NZ_CP041203.1|WP_147795857.1|3232987_3233839_+|TIGR00730-family-Rossman-fold-protein
MSDDGVPVPGSGYRKGPVLLRRGQIPTTTSDQRLLSGGDGADWLHGDPWRVMRIQSEFVEGFGALAELGPAVSVFGSARTLPEHPDFALGEEVGRLLAEAGYAVITGGGPGIMSAANKGASQAGGLSVGLGIELPFEQGMNPWVDLGVNFRYFFARKTMFVKYAEGFIVLPGGFGTFDELFEALTLVQTHKVTEFPIVLVGTDYWQGLLDWLRGPVLERGMIREADLELIRLVDDPQEAVRIVRDRGAELRAAERAAAAAAERAQEEAEAEVADEAEDAAGGR
>NZ_CP041203.1|WP_147795856.1|3231802_3232906_+|succinyl-diaminopimelate-desuccinylase
MTTTTPLDLTADLTTLTAAVCDLASVSGDEAALADAVEAALRGYPHLEVLRDGDAVVARTHLGRPSRVVVAGHIDTVPVTTDPANLPTRLEGAGADAVLWGRGTVDMKGGVAVQLALAAALTEPTRDVTWVFYDHEEVEASLNGLGRIAREHPDWLAADFAVLCEPTDAGLEGGCNGTLRAEVRVPGVAAHSARAWTGVNAIHGAAPVLAALAAYEPASVEVDGLVYREGLNAVLISGGVATNVVPDRCVVTVNYRFAPSRSVDEAEAHVRDLFDGYEVVVTDSAAGARPGLDDPAAAEFAAAVLGVTGGAPAPKYGWTDVARFSALGVPAVNFGPGDPLLAHKDDERLPVAQLDLCHDALRAWLTA
>NZ_CP041203.1|WP_147795855.1|3230789_3231743_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTDRTAWAWGLATVTDSGTVLDAWYPQPALGDVPAAAECPEELAALVAADAARAVRTETVLTVVDLDAEPVDTADAYLRLHLLSHRLAAPNTLNLDGVFAALPNVVWTDHGPCAVDGFELTRARLRAATGRPVTVFGVDKFPRMVDYVLPQGVRIADADRVRLGAHLASGTTVMHEGFVNFNAGTLGTSMVEGRISQGVVVGEGSDIGGGASIMGTLSGGGRERVSIGERSLLGANAGLGVSLGDDCVVEAGLYLTAGTKVTLVGQAGEDGAPRVVKARELSGSDGVLFRRNSLTGGVEAVARTGTGITLNAALHAN
>NZ_CP041203.1|WP_147795854.1|3229861_3230785_-|hypothetical-protein
MSRRRSSTASRLGCAALAAVALLAGAVGAVVWALGGASPAPASRRCTATVDGTAWGLSADQADNAALIAATAAQRGLPARAATIGLATALQESRLINIDYGDRDSIGLFQQRPSQGWGTVEQIMDPVYSTGKFYDGLVGVPGYTELPVTEAAQAVQRSGFPDAYAQHEGRSRAWASALTGWTPAALDCDLGPAAGPGAVDAVAARVQRDYGGAVSTAVDGAADGSAGPVVLLDVAGLTAATGGDPARASWAVAQWAVAVAEPLAVDAVEVGDARWDRGGEGWTAGGAAADAAAVPEGTVALTLAPTP
>NZ_CP041203.1|WP_147795863.1|3242941_3243964_+|tryptophan--tRNA-ligase
MASGSPRIFSGMQPTSDSLHLGNYLGALTQWVALQESYDALYCVVDLHALTVAPDPVALRERTRRTAAQYLAAGVDPERSILFVQSHVAEHAELAWLLSCQTGFGEAGRMTQFKDKSAKHGAEGTTVGLFTYPILMAADILLYDTALVPVGEDQRQHLELTRDLAERLNKRFGDGTAVVPDAHIVKATAKIYDLQDPTAKMSKSASSPNGIIELLDPPKTVAKRIRSAVTDAGSEIRFDRENQPGIANLLTIYSALTGREVESIVADYEGKGYGHLKVDLADVVVEFLAPFQERVNGYLADPASLDAVLEDGAERARAIARGTLDRVADRFGLLPRRRTA
>NZ_CP041203.1|WP_147795864.1|3243960_3244500_+|2'-5'-RNA-ligase-family-protein
MNPTGPFADELRIGVAVSVPEPYAAELQAARARVGDPAADLIRPHITLLGPTVLPTAALPEAEEHLRAVAAAHAPFTVHLRGTATFRPVSPVVFVQVVEGIASCELLEVAVRSGVLDQELRFHYHPHVTIAHEVPDDALDRAFADMADFEARFDVAEIHVYEHGDDGMWRTIGAFPLGG
>NZ_CP041203.1|WP_147795865.1|3244594_3245632_+|YihY/virulence-factor-BrkB-family-protein
MGVPAEPQGAGRAHAAAASAEDVAAGNRQDVGARVYPGGFAGLVARGRAVLAWWQGTRAARANARFGEAGGGVLTGGIAYATIFSVFAGLTIGYSVFMAVLGNNEALRQTVLDTIDANLPGLVMTSSDDETGVIDPDSLQLSTGVGIAGLIAFVVLLVSAISAMAALRTAVRAMFAAEGAGGNAVTGKLRELGGFAGIGLAILVSALLSIATTTAADWALSALGLDGSTVGSLVLRGAGILVAFVVDAGTFVLIVRVLAAQHPAWPDLRQGMLVAAVGLGVVRVLGTSVVAGSADRNAILASFAVIVTLLIWINLIARIVLLAAAWTADPPAPEQPPEAPEPAAP
>NZ_CP041203.1|WP_147795866.1|3245833_3246907_+|hypothetical-protein
MQPDIAPDSGLPAVLSWREARQAEVLPALRAGYVPAARGVRVVRGADPLDPDVRTAVAMAAVHPDVTLGGWAAARLHERACLAAGGARPMPAVRRGAAPRRDRQEPPVLDGRRVHGRAGELLPVLLLAPPEVRLRAGPGRRLVRSRVLPEERVRMSGLWVTSPLRSAFDLARFGRYSDAVVGLDRLRALGLVRPVDLAELIRERSRWRGSAEARRALAASADGVESPQESRMRLIWLAADLPVPRCNPVVLDADGRFVARVDLLDESSGVVAEYDGAVHSAAERRSADARRQERLQALGLEVLRATSVDLATPTARARWQGRARAARERALARRRSALWRTAPAAQDEEVVRRPARA
>NZ_CP041203.1|WP_147795867.1|3247029_3247209_+|hypothetical-protein
MLVVVGGGAGVGYVVGGGRGAVLGGAVGVVALVIGYVVLLLSGVSLAARLGARRDGGRL
>NZ_CP041203.1|WP_147795868.1|3248145_3249984_-|succinate-dehydrogenase-flavoprotein-subunit
MQTHQFDVVIVGAGGAGMRAALESSARTRTAVISKLYPTRSHTGAAQGGMCAALGNVEDDNPEWHTFDTVKGGDYLVDQDAATIMANEAIDAVLDLERMGLPFNRTPEGRIDQRRFGGHTRNHGEAAVRRACYAADRTGHMILQTLYQQCVKNEVAFFNEFYVLDLILTHDLTGREVPDGEDVAVSGVVAYELSTGEIHVFRAKSVVLATGGAGKIYKTTSNAHTLTGDGMALAYRRGLPLEDMEFFQFHPTGLAGLGILLSEAARGEGGILRNADGERFMERYAPTIKDLAPRDIVARSMANEVREGRGAGPNKDYVLLDLTHLDPAHIDAKLPDITEFARTYLGIEPYTEPVPVYPTAHYAMGGVPTNVEGEVLRDTTHVVRGLYAAGEVACVSVHGSNRLGTNSLLDINVFGKRAGISAAEYAAGASWVDLPADPAAAVVEELEDMRNRPQGERVSDVRRELQQTMDTNAQVFRTAESLRQAFQDIQVLQERYTRVSVQDKGRMFNTDLIEAIELGFLLDIAETVVVGALNRRESRGGHFREDYPKRDDAGFMEHTMAYRRQPGVPVDSPALSAPKGEEVPPPGPGRPVVLLGTKPVVTTVYQPMERKY
>NZ_CP041203.1|WP_147795869.1|3250030_3250480_-|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MTTIAAPRTRGAGPGRRTSRGNWELYGWVFMRASGVVLLVLIFGHLFVNLVAGEGISAIDFGFVAGKWASPFWQIWDLLMLWLAMIHGTNGVRTIINDYAERDGTRLVLKLALYTAFTVVVVLGTLVIFTFDPCPANSPADLLPSFCTA
>NZ_CP041203.1|WP_147795870.1|3250479_3250905_-|succinate-dehydrogenase,-cytochrome-b556-subunit
MPTAPAEARDDAAPTAKRIPGGTLYRGREGMWSWVAHRITGVLIFFFLLVHVLDTSLVRVSPEAYNAVIGTYKNPIMGLGEAGLVAAIVFHAFNGIRIILVDFWSKGAKYQRVMLWVVLGLFVVTMAGFLPRHLMHVFGGE
>NZ_CP041203.1|WP_147795871.1|3251133_3252288_+|mannose-1-phosphate-guanylyltransferase
MSSPATPASPVPPRPIDGFHAVVPAGGAGTRLWPLSRQGSPKFLHDLTGTGRTLLQGTVDRLLPLTGRDGVLVVTGVRHAEAVAAQLPELGPGQVVAEPSPRDSMAAIGLAAAILAERHGPDVVLGSFAADHVIDDLDGFWSAVTEGVAAARAGYVVTIGIEATEPSTAFGYIRAADALGAEGAPSARHVAGFTEKPDAETAAEYLATGDYWWNAGMFLVQAGVLLDHLARQLPPLAAGLREIAAAWADPERRETVLAETWPGLTKIAIDHAIAEPVAAAGGVAVVPGSFTWDDVGDFDSLAALLPAVGVDGGRTLGDDALVQRLDAAGAVVVPGAGRAVTVLGVPDAVVVDTADAVLVTTRAHAQAVKQAVDGWRGRGRDDLL
>NZ_CP041203.1|WP_147795872.1|3252321_3253560_+|amidohydrolase
MPPPARTARVGRVIVDATRVSQLVATLQPELVEIRRDIHAHPELGRTEQRTTRVIAERLRLAGLSPRLLPGTGLTCDIGPSPVETGRRRIALRADIDALPVQETTGLPYASTVHGVAHACGHDVHTTALLGAGLVLAELHEAGELPTGVRLVFQPAEEVQPGGALDVLQAGAMDGIGRIFALHCDPKVDVGRIGSRIGPITSASDEITVVLTGPGGHTSRPHLTADLVYALGQVITQVPAVLGRRLDPRSGVNLTWGAVQAGSAHNAIPASGSVRGTLRCLDVRAWEKASQVLHDAVEQVVAPYGVEVEVRHQRGVPPVENDERAVAVLEAAARDVLGEESVQLTEQSLGGEDFAWYLTRVPGAMARLGTRTPGGRTYDIHQGDLVVDERAIAAGAALLARAALRVGATPGG

Crispr_ID: NZ_CP041203_5

• CRISPR_ID: NZ_CP041203_5
• CRISPR_location: 3333053-3333131
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041203_5

Consensus_repeat	Method
GGGTCCCGACCGACACCGGGGCCGA	CRISPRCasFinder

spacers of NZ_CP041203_5

>5.1|3333078|29|NZ_CP041203|CRISPRCasFinder
GTTGGGGGCCGGGGCCTCAGTCGACACGA

CRISPR arrays and Neighbor proteins around NZ_CP041203_5

CRISPR arrays

The CRISPR arrays of NZ_CP041203_5

>merge|NZ_CP041203|5|3333053-3333131|CRISPRCasFinder
GGGTCCCGACCGACACCGGGGCCGAGTTGGGGGCCGGGGCCTCAGTCGACACGAGGGTCCCGACCGACGCCGGGGCCGA

>NZ_CP041203|5|5|3333053-3333131|CRISPRCasFinder
GGGTCCCGACCGACACCGGGGCCGA	GTTGGGGGCCGGGGCCTCAGTCGACACGA
GGGTCCCGACCGACGCCGGGGCCGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041203.1|WP_147795926.1|3321525_3323604_-|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|225118
NZ_CP041203.1|WP_147795927.1|3323827_3324583_+|glucose-1-dehydrogenase	unknown	unknown	gnl|CDD|235506
NZ_CP041203.1|WP_147795932.1|3327754_3328699_+|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|366009
NZ_CP041203.1|WP_147795941.1|3345006_3345630_+|hypothetical-protein	unknown	unknown	gnl|CDD|224583
NZ_CP041203.1|WP_147795939.1|3341848_3343528_+|arginine--tRNA-ligase	unknown	unknown	gnl|CDD|234964
NZ_CP041203.1|WP_147797153.1|3336672_3337470_-|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NZ_CP041203.1|WP_147795940.1|3343524_3344916_+|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|143501
NZ_CP041203.1|WP_147795930.1|3326548_3327130_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_CP041203.1|WP_168216998.1|3331496_3331640_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795934.1|3334615_3335314_+|AMP-binding-protein	unknown	unknown	gnl|CDD|223395
NZ_CP041203.1|WP_147797152.1|3328722_3331053_+|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223354
NZ_CP041203.1|WP_147795936.1|3337677_3338067_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_168216999.1|3335479_3336529_-|beta-lactamase-family-protein	unknown	unknown	gnl|CDD|365903
NZ_CP041203.1|WP_147795938.1|3339766_3340420_-|FCD-domain-containing-protein	unknown	unknown	gnl|CDD|225097
NZ_CP041203.1|WP_147795931.1|3327165_3327654_-|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224759
NZ_CP041203.1|WP_147795928.1|3324703_3325354_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147797154.1|3338574_3339561_+|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl|CDD|223745
NZ_CP041203.1|WP_147795929.1|3325470_3326232_+|DUF1775-domain-containing-protein	unknown	unknown	gnl|CDD|377951
NZ_CP041203.1|WP_147797151.1|3326319_3326526_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041203.1|WP_147795937.1|3338221_3338524_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041203.1|WP_147795926.1|3321525_3323604_-|SpoIIE-family-protein-phosphatase	gnl|CDD|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	7.62239e-38
NZ_CP041203.1|WP_147795927.1|3323827_3324583_+|glucose-1-dehydrogenase	gnl|CDD|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	2.12489e-82
NZ_CP041203.1|WP_147795932.1|3327754_3328699_+|LLM-class-flavin-dependent-oxidoreductase	gnl|CDD|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	1.22601e-41
NZ_CP041203.1|WP_147795939.1|3341848_3343528_+|arginine--tRNA-ligase	gnl|CDD|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP041203.1|WP_147797153.1|3336672_3337470_-|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	5.65379e-05
NZ_CP041203.1|WP_147795930.1|3326548_3327130_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.54746e-19
NZ_CP041203.1|WP_147795934.1|3334615_3335314_+|AMP-binding-protein	gnl|CDD|223395	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	7.98585e-11
NZ_CP041203.1|WP_147797152.1|3328722_3331053_+|LLM-class-flavin-dependent-oxidoreductase	gnl|CDD|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.5103e-32
NZ_CP041203.1|WP_168216999.1|3335479_3336529_-|beta-lactamase-family-protein	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.30909e-30
NZ_CP041203.1|WP_147795938.1|3339766_3340420_-|FCD-domain-containing-protein	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.88793e-46
NZ_CP041203.1|WP_147795931.1|3327165_3327654_-|MarR-family-transcriptional-regulator	gnl|CDD|224759	COG1846, MarR, Transcriptional regulators [Transcription].	5.64175e-13
NZ_CP041203.1|WP_147795941.1|3345006_3345630_+|hypothetical-protein	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	4.75447e-24
NZ_CP041203.1|WP_147797154.1|3338574_3339561_+|Gfo/Idh/MocA-family-oxidoreductase	gnl|CDD|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.03903e-48
NZ_CP041203.1|WP_147795929.1|3325470_3326232_+|DUF1775-domain-containing-protein	gnl|CDD|377951	pfam07987, DUF1775, Domain of unkown function (DUF1775). Domain found in bacteria with undetermined function. Its structure has been determined and is an immunoglobulin-like fold.	1.91461e-49
NZ_CP041203.1|WP_147795940.1|3343524_3344916_+|diaminopimelate-decarboxylase	gnl|CDD|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	7.28241e-151

Protein sequences

>NZ_CP041203.1|WP_168216998.1|3331496_3331640_-|hypothetical-protein
MGLDDITEKASDAGIEKAGDTAAKKSGGGNAEHIDDLEKKADDKIGK
>NZ_CP041203.1|WP_147797152.1|3328722_3331053_+|LLM-class-flavin-dependent-oxidoreductase
MQLGVELVPSAADPGAPGRLARRAEELGLDLVVVPDGAGAGDGAGVAPEAPGGREGVATREGAGAPEGDALDDALDAWTVLASVAGATERVDVATRGLRLDDRPPAVLARAVASLDHLAGGRITPGLAPGPDGADADDALDALAEGVDVLRGMWAAAEPGPLVHEGRHHRVAGAQRGPAPAHDLALWLGAVPGAVDAGARTLAARVADGWWLPVPPRTASHLDAVLGEQTALDAALAAAGRDPREVRRGLVLDAGALGLGAGADGSAPVADVADALAALVLEAGVGTLVLGVADDRALEAFAEVAGAVRDRVAAARASRGTRVGTLRSAAVRAARAPGIDYDAIPAALVGTAVEPGDAGYAAVRSTYMRGGRPGLVLRPGGTAEVVEALAYARAQDVTIAIRSGGHGISGRSTNEGGIVLDLSRMNAIEVLDVAARRVRIQPGARWGEVAAALHPYGWALTSGDYGGVGVGGLATAGGIGFLVREHGLTLDHLRAAEVVLADGSVVRASADEDPDLFWGIRGAGANLGVVTSFEFEVDEVGDVGFAQLVFDASDTERFLVDYGATLEAAPRDTTAFLIMGPPRGGIVAAQVMAMVDSDDPETIIERLNPFARIAPLLQQQVQVVPYPAVVSVPQRHTSDGEPVTRSGMAEHLTPELAADAARLVRSGATPFFQIRAAGGAVHDVPADATAYAHRSANFSIVAMGSSRRRIDAIWDAMAHHFDGTYLSFETDPRPERLADVYPGATLERLRGLKRRYDPEDVFRHNYSVAEPPAVVL
>NZ_CP041203.1|WP_147795932.1|3327754_3328699_+|LLM-class-flavin-dependent-oxidoreductase
MTDYGHDLLFGSFITPSNAAPERVVGLAQLSERAGLDLATFQDHPYQPSFLDTWTLLSYVAARTERITLAPNVANLPLRPPAVLARSVASLDLLSGGRVELGLGSGAFWDAIEAMGGRRLTPGQGVDALREAITVIRTLWDTSERTRVDLPGDYWPLAGAKRGPAPAHPVGIWVGAYKPRMLRLTGEHADGWLPSLGYLRSLQDLDDANARIDDAAHAEGRDPRAVRRLLNVGGQLTARRSTDLLSGPPEQWVEQLAVLALEHGMSAFIATGDDPTLLTVLGQEIAPAVRELVAAQRGGSAGVAPEAVGAGDQA
>NZ_CP041203.1|WP_147795931.1|3327165_3327654_-|MarR-family-transcriptional-regulator
MTATGEQTTHPASDLGWSLGVLLRAYEHAMTSAVEAVPHGFRGFLVLREVVRGAHPSQAALAASLGIDRTVMTYLIDDLERAGLVERRVAEVDRRQRRVHPTAGAEALLAELEHRMAVAEDAVFGALDPADRAAVGQLLRRAACGYRETGDPCTTVEHALGR
>NZ_CP041203.1|WP_147795930.1|3326548_3327130_+|MarR-family-transcriptional-regulator
MLRALIICARTIRASIGGVIPPAPTAVPAPGAAASGPAASSADAPAGDPLAVEAQVCLAMSAAARALVGFYRPLLEPLGLTHPQYLAMLALWQHGDLTLKALAALLHLEPATASPLVRRLEALGLVERARDGADERALAIRLTDDGRALRERAVGIPAAMVDGLRLDLGQVAQVREAAQLLLAACEDAEARRG
>NZ_CP041203.1|WP_147797151.1|3326319_3326526_-|hypothetical-protein
MGKIGRANDRREAALLSVFGPAQVGDPLAPDREVAEADRERDQALRTEFVRVVGADGRSYLVERPVED
>NZ_CP041203.1|WP_147795929.1|3325470_3326232_+|DUF1775-domain-containing-protein
MSASPRALARLAAGPALAAALVLGSAAAASAHVRVVPETTAAGGWTVLTFRVPNESPTSATTRVTVDLPTDTPLTSVSTQPVPGWSATVERGALPEPVEVDGTTLTQAPLHVTWTADGAGIGDGEFQQFAISVGPLPAAGTELVLPAHQEYADGEVVDWDQVAEGDEEPDSPAPTFTTTEAAADGHGHGTADASGDGSEDAGAGDEVGAGDAGSGSSTDDAGALPVVLGGLGLAAGVGALVVAVLAWRRAGAR
>NZ_CP041203.1|WP_147795928.1|3324703_3325354_+|hypothetical-protein
MDPSVQRALVVGRLLGVAATVLALGSGAHVLGGGHAPSGSALALIGSLVVVGSAALARRPLTVRVLLPAAVAGQLGVHAALTWLAPGAGAALPGAAHGGHGVVLPGAVPGLAGAAARVPVDAVVADPHGAGGLMLAAHAAAMAATVLLLVATDRGVLALARRWAALLPALAGALPTPVAPRARPVAPVAAAPRPVPALRGGVARRGPPGVLRPRVA
>NZ_CP041203.1|WP_147795927.1|3323827_3324583_+|glucose-1-dehydrogenase
MARFDGKVALVTGGGSGIGEAVAQRLAAEGASVVLTDIRLEAAQRVADEIVAAGGAASAFQQDTADPESSRAAVDFAVATYGALHLAVNNAGIAARNQLPTGELDLDADWRRVIDINLNGVLYGLRYELPAIEAAGGGAVVNMASMHALVAAPGNSAYVASKHAINGLTKNAAVEYGTRGVRVNAVAPGNIWTPLMAQLPQDQIDAITAKHPIGRIGRPDEVAALVAFLLSDEASFITGSLHQVDGGYPAA
>NZ_CP041203.1|WP_147795926.1|3321525_3323604_-|SpoIIE-family-protein-phosphatase
MTTEPQSGATTAGTPRLPRAPRRPTARDLRLVALFALLNAAACLLGRANRVPDAEVSLVWPAAGVSVLWLVARARRPWPWLDPLVLALSTGTVVAATGASASTAAIGALAATVQAVVCAAVLARYAPYVWAARGTQQLRRVPDLWWFVLGAALSSVVSAPLVELAVVLGGEPWTWRTALLWCARNTVAIVGIGSLGFTLGAWLRGRRSRTAPERVEWWTEGRGADYLAAMLLAPLLYVVWFVEIDWLAVVFPLIGLTVWAGSRLPTRSVVLHTTLCGVVAIQLTLAGSGPFAELPDPTAQVAIAQLYVGLVAVIGLALAIARDERALLVADLQAARDRAQEQATLLATVVDTMSEGVRVVDAAGRVVVRNPTAGLLLTGRTAPDGAGDADLAHLAHLDGSPVPDAELPFRRALAGEQVREADLLVRVPGATEPRIVTFSASPLPAAAGGGAVTVLRDVTVERTELRRAALVQASLLPSRALDVPGLDLAARFVPAGSVGGDFYDWQAVADGLVLTLADVMGKGPAAAILAATTRSVLHAQSALQDVAGTLAATERAMTADLANAGAFVTMFRAYVDAADGQVSYTDAGHGLSLIVGQDGTARRLSATGLPLGIAPGPDRVTARARLAPGELLVTFSDGVLDALGGSLGDLDQVGRAVRGTRTAEQAADAVLSLVDPRHPEDDLTVVALRRAA
>NZ_CP041203.1|WP_147795934.1|3334615_3335314_+|AMP-binding-protein
MRADRSVRADRAIRLASALHSAGVRANHRVSLVLGPGPARSATIAACLRLGAVVVAASPDLPDAEVASAHAAARPDVVVGDRRGLRLVRRLRGPALWLAADRPRLADRFVGGALPLVDLVTRHLLVALPPAPDPHGDAALLFVPSDRPGEGPLGVHWTHEDLEALAGASGDADSAPWEVDGAVPGPGRRSAPRGARAASVPLALDVLDAAGGWRHRHASTGGPAPARRPALV
>NZ_CP041203.1|WP_168216999.1|3335479_3336529_-|beta-lactamase-family-protein
MTAFPPSLAPAPAPALVTVVVEDGRPPVVDVTGYADLAERVPATATTPVHLCSAAKAVTAVGVLRLAGRGVLDLDADVRALVPLDVPGRTGPTLRELLGHRGGVVDPPGAFEPAAGRVPPTADVLAGTTAAHVGPVRVTVEPGSGFAYSDAGYCVVERAVEVATGESFADVLHREVVAPLELSSTGFWAGEAAAHVRGPRAAAVARLAESAAAGHHADGHRVAGTRAHYAGLAASGLWASASDLAVLLDDVGRALDGRGGVLLDADQGAALVRDPGGLGVGLGVFPFGVPRRPCVMTQGWGVGSQCQLRWYPAAGGAVAVVVAADPGVGQDESVVGTTVAAVADGRGWR
>NZ_CP041203.1|WP_147797153.1|3336672_3337470_-|CPBP-family-intramembrane-metalloprotease
MGSPTRLLAAALVCGAAVLIFAVHVRPLGYVPLVLGVALGLAVDRALGRDLALIGTGMAIVSAISLKADLSDAGMARFTVALSLAVLVPWALSRYVFGQRTIRFPVATGRRWARWQWAYLAAVVVIGYLVLPFYFIGSGAYRNWPDLDGGQDIARLFVGVNAVGIWDELFFICTVFALLRRHLGLWTANVLQSVVFVSFLWELGYREWGPLLTVPFALVQGWIFARSTSLPYVVAVHLLFDLVVFGVLVHAHHPELLDVFVTAPG
>NZ_CP041203.1|WP_147795936.1|3337677_3338067_-|hypothetical-protein
MPRRRPSSIPGLVEHREPLAPGEAHVDPADPRGLARGAGDGSDWFSWRAELFSWVAAVLAVVEVVVAVRAASWRPLVATALLLLAAAVARRTRTRYDRSPRGRRDLLRMSGGMFGALLVFFAGLPFLAP
>NZ_CP041203.1|WP_147795937.1|3338221_3338524_+|hypothetical-protein
MLRPTRILLRDGATRALLRAVDLRGHTVRIEGTGGSLRVEDTTTETLLVDAPMARLELIDGESIHYEGAGRVLDQRELRHLRITLEFSEPAARSLPRAPR
>NZ_CP041203.1|WP_147797154.1|3338574_3339561_+|Gfo/Idh/MocA-family-oxidoreductase
MRLGVVGAGAMVAEFLERGAPLVPGLEVVGVLARPRSLDRARELAARTGVPLVTDSLDELCAAGIDTLYVAVPNAAHVAYAREGLERGLHVVVEKPMTSTVDEALDLRRLAEQRGRFLFEAVTTIHLAALAQVRAWLPRIGDVKLVQSQYSQYSRRYDAFRAGEVPPAFDPEQSGGALMDLGLYNLHFVLGLFGEPEQATYTANVERGIDTSGVLVLRYPGFVATCTQAKDSAGPQGGLIQGTAGRITTSTSPNLVGAVTLELADGTVETVDDGLAGDRLATEFRAFVRAVEEDDRAAASAWLDSSVAVSRVQTAARLAAGIRFPADG
>NZ_CP041203.1|WP_147795938.1|3339766_3340420_-|FCD-domain-containing-protein
MTRRTGLIDATVAQLRARITSGDWPVGTRIPPEPALVELLGVGRNTVREAVQSLVHAGLVERRQGSGTYVLSTSELAVSMGRQIADARQRDVIEVRRSLEVEAARLAARRRTTADVAAITRLRDQRAEAYRSGALDRMVAADLALHRAIARAARNPVLLSLYENLIDAITDNIRFNFAQILQDGDNHDGLVEAIAAGDDVRAVDETSVYLSGLLGED
>NZ_CP041203.1|WP_147795939.1|3341848_3343528_+|arginine--tRNA-ligase
MTPAELSESLRAALAGAVADGTFALDAADLPATVHVERPRQREHGDWATNVALQLAKKAGTNPRAFAEELARRLADAPGVAKVDVAGPGFLNITLDAAAAGELARSVVEAAGGYGRNASLAGEKINLEFVSANPTGPIHIGGVRWAAVGDSLARVLEASGAAVTREYYFNDHGAQIDRFARSLLARAKGEEAPEDGYGGQYISDIAETVIAQAVAAGDPDPRTLPDAEAQEAFRARGVDLMFGEIKQALHDFGVDFDVYFHEDSLHENGAVDRAVARLRELGHVFESDGATWLRTTEFGDDKDRVIVKSDGEAAYIAGDLAYYLDKRERGFDRAIMMLGADHHGYVGRMMAACAAFGDVPGVNLEILIGQMVNLVKDGQPVRMSKRAGTVVTLEDLVEAVGVDAARYSLARSSTDSSIDLDLDLLTRATNENPVYYVQYAHARTCSVGRNAADAGVRRDDGFDASLLDHATESVLLGKIAELPRIVAQAAELREPHRVARYLEELAGAYHKWYDQRRVLPFGDEEVSDVHRTRLWLNDATRQVLANGLALLGVSAPERM
>NZ_CP041203.1|WP_147795940.1|3343524_3344916_+|diaminopimelate-decarboxylase
MTAGPTAAPAPLGLPWPASAGRGADGAVRVAGVDLRDLAAEQGTPAYVLDEADFRARARALRTAFEAAFAEVGAGVDVYYAGKAFLSVAVARWAHEEGLRVDTSTGGELAVALRAGVPGADLGLHGNNKSDAEIARALDAGVGRIIVDSLGEVERVAAAVRARGTGAEPAPVMVRVTTGVHAGGHEYISTAHEDQKFGLSVATPAGGGDSPALTALQLVLRHPELRLLGIHSHIGSQILDPAGFAVAAQSVLGLRADLAARTGYLVPEVDLGGGFGIAYLPGEVPLDVDRIAKEIAAAVDATCAALGTPLPRLSFEPGRAIVGPTTLTLYTVGTVKPVSLDDGRSRLYVSVDGGMSDNIRPALYGAHYHAAIVSRGGAAETVLARVVGKHCESGDIVVHEVQLPADVAAGDLLAVAATGAYGRSMASNYNHVPRPPVVAVHDGAARVLVRRETEDDLLALDLG
>NZ_CP041203.1|WP_147795941.1|3345006_3345630_+|hypothetical-protein
MVDGDQDGTTAVEAAFGAYLGEAAARADRLRAEAARGLVLAVRQAADRGWSQRRIAAALGRSQPEVARLLRRVDAVPPAVDVAPARREVVVDGAPGDRHGAAPPGERADGPPETVLNRVLGRQRDAIVAAAGRHGMSNVRVFGSVARGEDGPESDVDLLVDLEPGVSLFDLARLEVELTDLLGRPVDLVPARMLKPRVARTVEAIAL

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	450973-451003	5	0.839
NZ_CP041203_1	1.1|56304|28|NZ_CP041203|CRISPRCasFinder	56304-56331	28	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1151842-1151869	6	0.786
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	974028-974058	6	0.806
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1885689-1885719	6	0.806
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2094148-2094178	6	0.806
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1885869-1885899	6	0.806
NZ_CP041203_5	5.1|3333078|29|NZ_CP041203|CRISPRCasFinder	3333078-3333106	29	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	395175-395203	6	0.793
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP029835	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence	24897-24927	7	0.774
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	549838-549868	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	134924-134954	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	46820-46850	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	134668-134698	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	542955-542985	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	2058550-2058580	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	990585-990615	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1885344-1885374	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1885288-1885318	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	213993-214023	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	429277-429307	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	31803-31833	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1780424-1780454	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	202169-202199	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1383981-1384011	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	121375-121405	8	0.742
NZ_CP041203_3	3.1|1092034|31|NZ_CP041203|CRISPRCasFinder	1092034-1092064	31	NZ_CP015441	Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence	144512-144542	9	0.71

1. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.839

tcgcccggccgaagcggcggacgacacggcc-	CRISPR spacer
cggcccggccgaagccgcggaccac-cggccg	Protospacer
. ************* ****** ** ***** 

2. spacer 1.1|56304|28|NZ_CP041203|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 6, identity: 0.786

cgagagctgggtgtacatggcgaggacc	CRISPR spacer
agtgagcggggtgtgcatggcgaggatg	Protospacer
 * **** ******.***********. 

3. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.806

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
tccgcgtgccgaaccggcggacgacacggtc	Protospacer
**  *  ****** ***************.*

4. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
tccgcgtgccgaaccggcggacgacacggtc	Protospacer
**  *  ****** ***************.*

5. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.806

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
tccgcgtgccgaaccggcggacgacacggtc	Protospacer
**  *  ****** ***************.*

6. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
tccgcgtgccgaaccggcggacgacacggtc	Protospacer
**  *  ****** ***************.*

7. spacer 5.1|3333078|29|NZ_CP041203|CRISPRCasFinder matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 6, identity: 0.793

gttgggggccggggcctcagtcgacacga	CRISPR spacer
tctgggggccggggcctgtgtcgacgtga	Protospacer
 .***************  ******..**

8. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP029835 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.774

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
gcccccggacgaagcggcggacggcaaaggc	Protospacer
 * ***** **************.** .* *

9. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
gcgccgggccgacgcggcggacgaccgacgc	Protospacer
 **** ****** ************  .  *

10. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

11. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

12. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

13. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
gtccttcgccgacgcggcggacggcacggcc	Protospacer
 . *.. ***** **********.*******

14. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

15. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

16. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

17. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cccgcgcgccgaaccggcggacgacacggtt	Protospacer
.*  *  ****** ***************..

18. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
catgccggccgaagcggcggacggcaatgac	Protospacer
.   *******************.**  * *

19. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cggccgggccgaagctgcggacgacgcatct	Protospacer
. *** ********* *********.*. *.

20. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cctgccggcccaggcggcggacgacaccatc	Protospacer
.*  ****** *.************** ..*

21. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
acgcccggccgaaccggccgacgaggagctc	Protospacer
 ************ **** ***** . * .*

22. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
tgagcgcgccgcagcggcgggcgacacggcg	Protospacer
* . *  **** ********.********* 

23. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cggccgggccgaagctgcggacgacgcatct	Protospacer
. *** ********* *********.*. *.

24. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 8, identity: 0.742

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
gacgcaggccgaagccgccgacgacacggac	Protospacer
    * ********* ** ********** *

25. spacer 3.1|1092034|31|NZ_CP041203|CRISPRCasFinder matches to NZ_CP015441 (Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

tcgcccggccgaagcggcggacgacacggcc	CRISPR spacer
cgacgataccgaagcgatggacgacacggcc	Protospacer
. .*   .********..*************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1738605 : 1745469	7	Staphylococcus_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP041203|1738605:1745469|DBSCAN-SWA
CGTGGCGGTGCTGCTGCCCGCTGGGCCGGCCGCCGGTGACACCACCGACGACCAGGCGCGCGCGGCACAGCAGCGGGCCGAGGCCGCTCAGCGTCAGTACGAGGACGCGCAGGAGTCGGTCGAGGACCTGTCTGCGGAACTCGCGCAGGCCGTACTGACCCTGGAGGAGACGAAGGCCCGCCTGCCCGCAGCCCAGGCGGCGCTCGAGGAGGCGACTCGGACTGCAGACGCCGCCCGGCGCCAGGCCACGCTCGCGCGCGCCCGCCTGGAGGACACCAGCGACGTGCACGCCTCGCTGGTCGCCCAGATCGAGCAGGACTCCACCCGGACCGCCGAGGTGCGCGCCACCGTCGCCGAGCTCGCCCGCGCCGCCTACCAGGGGCGGTCGCGTTCCTCCGGTCTGGAGATCACGGTGGGCGCCAGCTCGGTTGAGGACTTCCAGGCGCGGTCGTTCACCGCGTCCACGGCCCAGCGGATGCAGGCACGCACGCTCGAGGAACTGACCAAGCTCGAGGCAGCCGGCCGCAGCAACGAGTCCCGGCTGCAGTCCGTGGTCGAGACCCTCGACGAGCTCGAGCAGGAAGCCGAGCGCGATGCCCGCGCGGCCGACGACGCCCTGGCAGCCCAGCGCGAGCAGAACGCGGCCCTCGACCGGGCCGTGGCCGACCAGACGGCGGCCGCCCAACGCATCGAGGGCATGAAGGGCCAGGCTGAGGCGGAGCAGGCCGCAGCCGACGCCGCCCGGGCCGACGCGGACGCCGAGATCGCGCGGATCGCGGCGCAGCAGGAGGCCGAAGCGGCAGCCGCGGCCGCGGCTCGGCCGGCACCCGCGAACCCTGCGCCACCGCAGCCGGCCGCTCCGGGGAAGCCGGGCCCGGCCGCTCCGCCCGCTGCCCCTCCAGCACCGCCGGCGGTCGAGTCCGGCGCGCTGTTCTCGAACCCGACGTCGATCCAGCCGATGTACGTCACGTCGAACTACGGCATGCGGCTGCACCCGATCCTGGGCTACACGCGCCTGCACGCAGGGATCGACCTGCGCACGTACTGCAACACACCGCTGTATGCCCCGCGCGACGGCACCGTGCAGTGGGCCGAGTGGCGCAACGGGTTCGGCAACCAGGTGATGCTCAACTACGGCACCATCAGCGGGCAGTCGCTGATGAGCTCCTCGAACCACTTGACCCGCTCGGTGGTCCGCGCCGGGCAATCCGTGACGCGCGGCCAGCTCATCGGGTATTCCGGCAACACCGGCCTGTCCGGAGCGTGCCACCTGCACTTCGAGGTCTACGTCGGCGGCAAGACCGTCGACCCCGCACCCCTGCTCGGGCTGCGATGACCACCACCAGCACCCCCTGCGCGACACCGGAAGGAGGACCGCGTGGACGGCATCACCGCGACCAGCGCCCGCATCCTTGAGATCCGCCAGCTCATCGGCGCCACCACACCCCGCCTCGTGAAGCCGGCGGGGGGCTCGGGCGACGCGTTCGCGGCGGCGCTCTCGGCGGCCGTCGACGACACGACCCCCAGCCCTTCCACGGCCCGCAACGCCCAGGGCGTGCCCGCCGACCTCGCGGCCCACGGCAACGGGAAGATCCCGAGCGACGCACTTTCCGAGGTCGGGAGCACCGGACACCGGCTGTGGGCGCCCGCAAGCCAGGCCCTCGACCAGCTGATGACCGCCGCCGAGCGCGACGGGATCGACGTCGGCATCACCGACTCCTACCGGTCGTACGACGCCCAGGTCGATGTCGCCCGCCGCAAGGGCCTGTACTCCCAGGGCGGCCTGGCGGCCCAGCCCGGCACCAGCCCGCACGGCTGGGGCGTGGCCGTCGACCTCGATCTGGACGACGCCGCTCAGAGGTGGATGCGCGCGAACGCGGGGCGGTTCGGGTTCGTCGAGGACACCCCACGCGAACCGTGGCACTGGGTCTACAAGACGTGAGACCGCAGCACCTGCTGCAGTCGCCAGGACGGACCAGGGAGGACTGAGACCACACCACCGCACGACCTCCGGGCCACGCCCGGAGCAGCACCGTCATCAACGCGCTCAGGGGCAGATCTGAGCGACCGGGTGGACGCCGAGTCCTGCCACCACCCGGATCATCTCGACCACGCATGGCAGGAACGGGGGAACCACCGATCGCCGGGCACGCAGGTGCCCTCGGGGTGAAGCCGGTCCACGGACCGGCCGGGCGTCTCCCGCCCGAACCCGACAGCTCACCCCGCAGGCGGCAGGAGACATCCATGCCTTCACGCCACACGACCTCCGCGCGGCACCGCGCGGACGGCCGAGCACACACCTTGCTCACGGACGCCCGCCTCACCGCGGCGCACCACCTGTCCAGCACCACCCGGCGCACCGGCGCCGCCGTCGCCTCGTCCGGCCTGGCGGTGTCGCTCCTCGCGGCACCCGCCCTCGCCGACGACGAGGTCCGGACCACCGCCGTGGACGTCTCGGCCCTGACCGCCTCCGCCCGTGCCATCGTCGAGGCCGCCCCGGTCGTCGCCTCGCCCGCGGAGGCGTCCTGGACTTTTGAGAACCCGGCCGCGACCGCGGTCACCCCGCCGCCGCCCCCGCCGCCCGTCGTTGAGGAGGAGCCCGAGCCCGATGCGGCGGCGAGCCGGTCGCGATCGGCAGAGCCCGAGGCGCCGGCCGCCGAGCCCGCTCCCGCGGCCGTCGGCGCGCCCGCGCCGGCGAGCGCGAACGGCAGCGCCATCGTCGAGATCGCCTCGAGCCTGGTCGGGATCCCGTACGTCTGGGGCGGCACGACCCCGTCCGGGTTCGACTGCTCCGGGTTCACTTCCTACGTCTACGCGCAGGTGGGGATCGCGCTGCCCCGCACGTCCGGCGACCAGCGGTACGCCGGCGTCGAGGTCCCGCGCGACCAGGCCCAGCCCGGTGACCTGATCTGGTCGCCGGGGCACATCTCCATCTACGCCGGCGGGAACCTTCAGGTCGACGCGCCCACCCCCGGCAAGAGCATTCAGATCCGCGAGATCTGGCAGTCCAACCCGAAGTTCATCCGCGTCGGGTAGCGCGCTGGGGCCGCACCCCGCCTGCGGGGTGCGGCCCGCGCCGCCGCCATCTGACTTACTCGGCCCCTGACTTCGAATAGCAGTGGATGCCCCTGGGGCGAACGTCGCTGGCTGAAACTCGGATGCCGTCGCCGGAGCGCTTGGGGAAACCGAGGTCGACGGCGGCTTTCGTACTGTTTTGATGTGTGTCAACATAGAGACATGTCGAACCAACCCCCCGTCCGCGACATCGTCATCGTCGGCTCCGGCCCCGCCGGGTACTCCGCCGCGATCTACGCGGCGCGCGCGGGCCTGGCCCCCTACGTGGTGGCCGGGTCGGTGACCGCCGGCGGCGCGCTCATGAACACCACGGACGTCGAGAACTTCCCCGGGTTCCCCGACGGCATCCTGGGCCCCGACCTCATGGACAACCTGCAGAAGCAGGCCGAGCGGTTCGGCGCCGAGGTGCTCTGGGACGACGCCGTCGAGCTCGACCTGGCCGGCCCGGTCAAGACCATCGTCACCGGCGGCGGCGAGACCATCCGCGCCCGCGCCGTCATCCTGTCGACCGGCTCCGCGTACCGCGAGCTCGGCCTGGACGACGAGAAGCGGCTCTCCGGCCGCGGCGTCTCGTGGTGCGCGACCTGCGACGGGTTCTTCTTCCGCGACCAGGACATCATCGTGGTCGGCGGCGGCGACTCGGCCGTCGAGGAGGCCACCTTCCTCACCCGGTTCGGCAAGTCGGTGACGATCGTGCACCGTCGCGACGAGCTCCGGGCGTCGAAGATCATGGCCGACCGCGCCAAGAACGACCCGAAGATCCAGTTCGCGTGGAACTCCGAGGTCGTCGGCATCCACGGCGACGAGAAGGTCACCGGCGTCACCCTGCGCGACACCGTGACCGGCGAGACCCGCGAGCACGGCGCCACCGGCGTGTTCGTCGCGATCGGCCACGTGCCGCGCACCGAGCTCCTCGCGGGCCAGGTCGACCTCGACGAGAACGGCTACATCGTCGTCGAGGGCCGGTCCACCCGGACCAACCTGCCGGGCGTGTTCGCCGCCGGTGACGCGGTGGACCACACCTACCGCCAGGCGATCACCGCCGCCGGCTCGGGCTGCTCGGCCGCGCTCGACGCGCAGCACTACCTGGCCGCGCTCGGCGACGTGGACCCGGCCTCCCCGGCCGAGATCCCCGCCGCCGTCGAGCACGCCGACGTCGACGCCGTCGCCGCCCTTGACGCCCGGGTCGCGGACACGGCCGCTGCGGCGGTCGCTCGATGAGCGCGCAGGTGCCCGACCTGACCGCGACGCGCGGGCGGCTGTCGACGCTCGATCGGTGGCTGCCGGTCTGGATCGGCCTGGCGATGGTCGCCGGTCTTGCGCTGGGTCGATTCGTCCCGGCGCTCGGTGATGCGCTGGCCGAGCTCGAGGTCGGCGGGATCTCACTGCCGATCGCCCTCGGCCTGCTGGTGATGATGTACCCGGTGCTGGCCAAGGTCCGCTACGACCGGGTCGCGGCGGTGACCGGCGACAAGCGGCTGCTCGCGAGCTCGCTCGCGCTCAACTGGGTTGTCGGGCCTGCGCTGATGTTCGCGCTCGCCTGGGTGTTCCTGCCCGACCTTCCCGAGTACCGCACCGGCCTGATCATCGTCGGCCTGGCACGGTGCATCGCGATGGTCGTGATCTGGAACGACCTGGCCTGCGGCGACCGCGAGGCCGCGGCGGTGCTGGTCGCGATCAACTCGGTGTTCCAGGTCGTAGCGTTCTCCCTGCTCGGCTGGTTCTACCTCAGCGTGCTGCCCGGCTGGCTCGGGCTGGACTCCGCCGGGCTGGACGTCTCGATCGGGCAGATCGCGGTCAACGTCCTGGTCTTCCTCGGCATCCCGCTGGCCGCCGGGTTCGCATCCCGCTGGGTCGGCGAGCGCACCCGCGGACGCAACTGGTACGAGGAGCGGTTCATCCCGCGCATCGGGCCGTGGGCGCTATACGGGCTGCTGTTCACGATCGTGCTCCTGTTCGCTCTGCAGGGTGACGCCGTGATGTCCCGGCCGCTCGACGTGGCGCGGATCGCGCTGCCGCTGCTCGTGTACTTCGCGGTGATGTGGGGCGTCGGGATGCTCACCGGCCGGGGCCTGGGTCTGGGGTACTCCCGCTCGACCACGCTCGCGTTCACCGCGGCGGGCAACAACTTCGAACTCGCCATCGCCGTCGCGATCGGCACGTTCGGCGCGACCTCCGGGCAGGCACTGGCTGGCGTCGTCGGCCCGCTGATCGAGGTCCCGGTCCTGGTCGGGCTGGTCTACGTCAGCCTGCGGGCCGGCCGACGCTGGTTCACCGACACCGCTCGTCCCGTCTCCGCCGAACCGCAGGAGGTCCGCTCATGACCACCACGACACCCGGCCCCGCCGTCATCGAGGAGGGCTGCACGCCGCAGTCCTCGCCTGCCGACCACGCGATGGGCCTGGACGCCGCCACCCAAGTTGCCGGCACCCTGAAAGCGCTCGGGGACCCGCTGCGCCTGCGGATGCTGTCGCTGATCGCGACGTCCCCGAACGGCGAGGCGTGCGTGTGCGACCTGGCCACGGTCGCCGAGGTCTCCCAGCCGACCGTCTCGCACCACCTGAAGCTGCTCAAGGACGTCGGGCTGCTGACGTCCGAGCGCCGCGGGACCTGGGTGTACTACCGGGTGCAACCCGCGCTGCGCGGAGCGGTCACCACCCTGCTGGACTCGTTCGCCCCGGTGGCGGCCGAGGCGGCGCACCTGTCCCCCCTGACCGGGCTGACCGACGCCGAGACCGCGCTCGCGCGGGTCGCGGACCGGCTCGCCGCCGCCTTCCCCGACCGCGACCCCGCCGCAGTGCTGACCGTGGTCCGCGAGTCCTACACCGGCCTGGCGCGCTCCTCGGCCGTTCGCTCGCACCTGGTGGTCAACACCGAGCGGTTCGCCCGCCAGCGCCTCACCGACGCCGCCCGCGCCCTGGACGCCGCGGCGACCGCGCACCGCCCGCAGGTGCTGTTCGTGTGCGTCGCCAACGCCGGGCGGTCCCAGCTCGCCGCAGCCCTCCTGCACCACTACGCCGGCGACGCCGTCGTCGTCCGCTCGGCGGGTTCCTCGCCCGCCGGCGAGGTGCACCCCGGGGTCCGGCCGCTGCTCGCCGAGCTCGAGGCCGACGCAGAGGCGTTCCCCAAGCCGCTGACCGACGACGCCGTCCGCGCCGCGGACGTCGTCATCACCATGGGCTGCGGCGACACCTGCCCAATCCTGCCCGGCAAGCGGTACGAGGACTGGGTCGTCGGCGACCCCGCCCTGGCCTCCGACACCGGCGTGCGCGCCATCCGCGACGAGATCGACCGCCGCGTGCGTGGACTGCTCACCGACCTGCTGCCCGACCTCCCCCTGCCCGCCTGACTCCTGAGGAGACCCCCGATGAGCGAGACCACCAAGCCGTCCGCCCTGTTCGTCTGCGTCCACAACGCCGGCCGCTCCCAGATGGCCGCCGGCTACCTGCGGGCGCTGTCCGGCGGTGCCGTCGAGGTCCGCTCGGCCGGGTCGATGCCCGCCGAGCAGATCAACCCGGTCGCCGTGGAGGCCATGCTCGAGGAGGGCATCGACATCCGCGCCGAGCGCCCCAAGGTCCTGACGACCGACGCGGTCAAGGCCTCCGACGTCGTCATCACCATGGGCTGCGGCGACGCCTGCCCGATCTTCCCCGGCAAGCGGTACGAGGACTGGGCCTTGGCCGACCCCGCCGGGCAGGGCATCGAGTCGGTCCGCCCGATCCGCGACGAGATCCGCGGCCGCATCCTGACCCTGCTCGCCGAGCTCGGGGTCGAGCCCGTCACCGCCTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP041203|1738605:1745469|1741841_1742900_+|WP_147794779.1|DBSCAN-SWA
MSNQPPVRDIVIVGSGPAGYSAAIYAARAGLAPYVVAGSVTAGGALMNTTDVENFPGFPDGILGPDLMDNLQKQAERFGAEVLWDDAVELDLAGPVKTIVTGGGETIRARAVILSTGSAYRELGLDDEKRLSGRGVSWCATCDGFFFRDQDIIVVGGGDSAVEEATFLTRFGKSVTIVHRRDELRASKIMADRAKNDPKIQFAWNSEVVGIHGDEKVTGVTLRDTVTGETREHGATGVFVAIGHVPRTELLAGQVDLDENGYIVVEGRSTRTNLPGVFAAGDAVDHTYRQAITAAGSGCSAALDAQHYLAALGDVDPASPAEIPAAVEHADVDAVAALDARVADTAAAAVAR
>NZ_CP041203|1738605:1745469|1739982_1740546_+|WP_147794777.1|DBSCAN-SWA
MDGITATSARILEIRQLIGATTPRLVKPAGGSGDAFAAALSAAVDDTTPSPSTARNAQGVPADLAAHGNGKIPSDALSEVGSTGHRLWAPASQALDQLMTAAERDGIDVGITDSYRSYDAQVDVARRKGLYSQGGLAAQPGTSPHGWGVAVDLDLDDAAQRWMRANAGRFGFVEDTPREPWHWVYKT
>NZ_CP041203|1738605:1745469|1742896_1744003_+|WP_147794780.1|DBSCAN-SWA
MSAQVPDLTATRGRLSTLDRWLPVWIGLAMVAGLALGRFVPALGDALAELEVGGISLPIALGLLVMMYPVLAKVRYDRVAAVTGDKRLLASSLALNWVVGPALMFALAWVFLPDLPEYRTGLIIVGLARCIAMVVIWNDLACGDREAAAVLVAINSVFQVVAFSLLGWFYLSVLPGWLGLDSAGLDVSIGQIAVNVLVFLGIPLAAGFASRWVGERTRGRNWYEERFIPRIGPWALYGLLFTIVLLFALQGDAVMSRPLDVARIALPLLVYFAVMWGVGMLTGRGLGLGYSRSTTLAFTAAGNNFELAIAVAIGTFGATSGQALAGVVGPLIEVPVLVGLVYVSLRAGRRWFTDTARPVSAEPQEVRS
>NZ_CP041203|1738605:1745469|1738605_1739940_+|WP_147794776.1|DBSCAN-SWA
MAVLLPAGPAAGDTTDDQARAAQQRAEAAQRQYEDAQESVEDLSAELAQAVLTLEETKARLPAAQAALEEATRTADAARRQATLARARLEDTSDVHASLVAQIEQDSTRTAEVRATVAELARAAYQGRSRSSGLEITVGASSVEDFQARSFTASTAQRMQARTLEELTKLEAAGRSNESRLQSVVETLDELEQEAERDARAADDALAAQREQNAALDRAVADQTAAAQRIEGMKGQAEAEQAAADAARADADAEIARIAAQQEAEAAAAAAARPAPANPAPPQPAAPGKPGPAAPPAAPPAPPAVESGALFSNPTSIQPMYVTSNYGMRLHPILGYTRLHAGIDLRTYCNTPLYAPRDGTVQWAEWRNGFGNQVMLNYGTISGQSLMSSSNHLTRSVVRAGQSVTRGQLIGYSGNTGLSGACHLHFEVYVGGKTVDPAPLLGLR
>NZ_CP041203|1738605:1745469|1743999_1745028_+|WP_147794781.1|DBSCAN-SWA
MTTTTPGPAVIEEGCTPQSSPADHAMGLDAATQVAGTLKALGDPLRLRMLSLIATSPNGEACVCDLATVAEVSQPTVSHHLKLLKDVGLLTSERRGTWVYYRVQPALRGAVTTLLDSFAPVAAEAAHLSPLTGLTDAETALARVADRLAAAFPDRDPAAVLTVVRESYTGLARSSAVRSHLVVNTERFARQRLTDAARALDAAATAHRPQVLFVCVANAGRSQLAAALLHHYAGDAVVVRSAGSSPAGEVHPGVRPLLAELEADAEAFPKPLTDDAVRAADVVITMGCGDTCPILPGKRYEDWVVGDPALASDTGVRAIRDEIDRRVRGLLTDLLPDLPLPA
>NZ_CP041203|1738605:1745469|1745046_1745469_+|WP_147794782.1|DBSCAN-SWA
MSETTKPSALFVCVHNAGRSQMAAGYLRALSGGAVEVRSAGSMPAEQINPVAVEAMLEEGIDIRAERPKVLTTDAVKASDVVITMGCGDACPIFPGKRYEDWALADPAGQGIESVRPIRDEIRGRILTLLAELGVEPVTA
>NZ_CP041203|1738605:1745469|1740848_1741640_+|WP_147794778.1|DBSCAN-SWA
MPSRHTTSARHRADGRAHTLLTDARLTAAHHLSSTTRRTGAAVASSGLAVSLLAAPALADDEVRTTAVDVSALTASARAIVEAAPVVASPAEASWTFENPAATAVTPPPPPPPVVEEEPEPDAAASRSRSAEPEAPAAEPAPAAVGAPAPASANGSAIVEIASSLVGIPYVWGGTTPSGFDCSGFTSYVYAQVGIALPRTSGDQRYAGVEVPRDQAQPGDLIWSPGHISIYAGGNLQVDAPTPGKSIQIREIWQSNPKFIRVG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147794776.1|1738605_1739940_+	peptidoglycan DD-metalloendopeptidase family protein	U5U762	Staphylococcus_phage	3.8e-05	37.5
WP_147794777.1|1739982_1740546_+	peptidase M15	M1UG82	Synechococcus_phage	3.8e-15	36.6
WP_147794778.1|1740848_1741640_+	glycoside hydrolase	D2KRB9	Lactobacillus_phage	6.4e-08	31.8
WP_147794779.1|1741841_1742900_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.0e-74	50.8
WP_147794780.1|1742896_1744003_+	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_147794781.1|1743999_1745028_+	metalloregulator ArsR/SmtB family transcription factor	A0A218MNF3	uncultured_virus	6.1e-11	43.5
WP_147794782.1|1745046_1745469_+	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.7e-12	37.4