CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042373	Lactobacillus malefermentans strain CBA3618 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP042372	Lactobacillus malefermentans strain CBA3618 plasmid unnamed1, complete sequence	0 crisprs	csa3	0
NZ_CP042371	Lactobacillus malefermentans strain CBA3618 chromosome, complete genome	0 crisprs	DinG,csa3,cas3,DEDDh,cas14j	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

93310 : 148780

Bacillus_phage(23.53%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147656446.1\|93310_94033_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_147656448.1\|94050_94266_-	hypothetical protein	NA	NA	NA	NA
WP_147656450.1\|94280_95108_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_147656452.1\|95288_95660_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_010620015.1\|95792_98507_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_010620016.1\|98554_99325_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_147656454.1\|99490_100147_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.5e-47	47.3
WP_147656456.1\|100200_101579_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.4e-47	40.8
WP_010620019.1\|101643_102147_-	universal stress protein	NA	NA	NA	NA
WP_147656458.1\|102181_103585_-	dipeptidase PepV	NA	NA	NA	NA
WP_147656460.1\|103702_104533_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_147656462.1\|104574_106239_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_133278345.1\|106442_107315_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_147656464.1\|107504_108722_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	1.7e-89	44.8
WP_010620024.1\|108983_111404_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.1
WP_076621474.1\|111788_112460_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_033445234.1\|112560_114054_-	MFS transporter	S4TR35	Salmonella_phage	7.8e-07	23.4
WP_010620027.1\|114110_115304_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.4e-146	68.6
WP_010620028.1\|115519_116239_+	hypothetical protein	NA	NA	NA	NA
WP_029327561.1\|116265_116541_-	hypothetical protein	NA	NA	NA	NA
WP_010620031.1\|117189_117510_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	7.0e-06	35.6
WP_029327562.1\|117733_118252_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.2e-27	41.4
WP_147656466.1\|118275_120597_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.3e-77	32.8
WP_010620034.1\|120648_121587_-	ribonuclease Z	NA	NA	NA	NA
WP_010620036.1\|122006_122750_+	hypothetical protein	NA	NA	NA	NA
WP_147656468.1\|122831_124209_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.2e-47	41.2
WP_147656470.1\|124255_126178_-	acyltransferase family protein	A0A1R3Y5Q6	Salmonella_virus	2.3e-27	29.8
WP_010620038.1\|126222_127521_-	GTPase ObgE	NA	NA	NA	NA
WP_147656472.1\|127613_129404_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_147656474.1\|129531_130278_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.0e-31	38.2
WP_010620041.1\|130267_131740_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_147656475.1\|132123_133503_-	argininosuccinate lyase	NA	NA	NA	NA
WP_010620044.1\|133492_134791_-	argininosuccinate synthase	NA	NA	NA	NA
WP_010620045.1\|134984_135284_-	nucleoside triphosphate pyrophosphohydrolase family protein	A0A1S7FYY8	Listeria_phage	9.4e-21	45.0
WP_029327563.1\|135273_135879_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_010620047.1\|135973_137224_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.8e-140	59.7
WP_010620048.1\|137403_138720_-	trigger factor	NA	NA	NA	NA
WP_010620049.1\|138943_140131_-	elongation factor Tu	A0A076FFS6	Aureococcus_anophage	9.5e-32	29.6
WP_010620050.1\|140420_141350_-	hypothetical protein	NA	NA	NA	NA
WP_147656477.1\|141402_143142_-	RNase J family beta-CASP ribonuclease	NA	NA	NA	NA
WP_010620052.1\|143368_143638_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_147656479.1\|143920_144184_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_147656481.1\|144220_145255_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_147656483.1\|145254_147219_-	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	1.2e-28	30.2
WP_147656485.1\|147422_147911_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_133278299.1\|147853_148780_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.6e-42	37.7

DBSCAN-SWA_2

504401 : 566007

Bacillus_phage(11.11%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010619462.1\|504401_505079_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_147656706.1\|505106_508151_-	hypothetical protein	NA	NA	NA	NA
WP_147656708.1\|508204_509227_-	DUF916 domain-containing protein	NA	NA	NA	NA
WP_147656710.1\|509650_510652_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010619458.1\|510648_511548_+	ABC transporter permease	NA	NA	NA	NA
WP_147656712.1\|511540_512311_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	3.0e-10	27.5
WP_147656720.1\|512365_513553_-	MFS transporter	NA	NA	NA	NA
WP_147656722.1\|513879_514752_-	NAD-binding protein	NA	NA	NA	NA
WP_010619454.1\|514849_515167_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	9.3e-19	38.8
WP_010619453.1\|515168_515924_-	TerC family protein	A0A068EP98	Bacillus_phage	2.6e-43	44.2
WP_147656724.1\|515992_516607_-	N-acetylmuramidase	A0A249Y0X5	Enterococcus_phage	4.3e-20	38.7
WP_147656727.1\|516703_517705_-	linear amide C-N hydrolase	NA	NA	NA	NA
WP_010620861.1\|518058_519297_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	4.0e-81	48.2
WP_147656729.1\|519535_520444_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_010619449.1\|520470_520728_-	hypothetical protein	NA	NA	NA	NA
WP_147656731.1\|520874_523634_+	MMPL family transporter	NA	NA	NA	NA
WP_033445195.1\|523817_524291_+	hydrolase	A0A217EQL1	Bacillus_phage	1.5e-09	35.8
WP_010619446.1\|524314_524770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010619445.1\|524832_525492_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_010619444.1\|525690_527829_+	LTA synthase family protein	W6LM83	Streptococcus_phage	2.9e-164	47.8
WP_147656733.1\|527878_529162_-\|transposase	ISL3 family transposase	A0A2R2ZGN7	Clostridioides_phage	5.9e-11	21.8
WP_010619443.1\|529363_530368_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.2e-19	28.6
WP_010619442.1\|530384_531440_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_147656735.1\|531592_532552_+	nucleoside hydrolase	NA	NA	NA	NA
WP_147656737.1\|532608_533409_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_033445190.1\|533414_534248_-	HAD family hydrolase	NA	NA	NA	NA
WP_010619438.1\|534247_535516_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.7e-18	28.2
WP_010619436.1\|535851_536418_+	ECF transporter S component	NA	NA	NA	NA
WP_147656739.1\|536433_537873_+	ATP-binding cassette domain-containing protein	A0A1V0SJ29	Klosneuvirus	1.1e-13	28.7
WP_010619434.1\|537869_538526_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_133278372.1\|538588_538948_+	hypothetical protein	NA	NA	NA	NA
WP_147656741.1\|539035_539602_-	hypothetical protein	NA	NA	NA	NA
WP_147656743.1\|539798_540368_-	DUF1175 family protein	D2KRB9	Lactobacillus_phage	2.6e-11	39.4
WP_010619430.1\|540625_540817_+	hypothetical protein	NA	NA	NA	NA
WP_010619429.1\|540898_541246_-	hypothetical protein	NA	NA	NA	NA
WP_010619428.1\|541265_542432_-	hypothetical protein	NA	NA	NA	NA
WP_010619427.1\|542512_543484_-	asparaginase	NA	NA	NA	NA
WP_147656745.1\|543790_545152_+	purine permease	Q9KX94	Enterobacteria_phage	1.7e-32	27.7
WP_010619425.1\|545254_545632_+	hypothetical protein	NA	NA	NA	NA
WP_010619424.1\|545763_546852_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.5e-36	41.6
WP_010619423.1\|546862_547681_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	2.2e-11	25.7
WP_010619422.1\|547677_548496_+	ABC transporter permease	NA	NA	NA	NA
WP_147656747.1\|548492_549566_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_010619420.1\|549613_549949_+	hypothetical protein	NA	NA	NA	NA
WP_147656749.1\|550020_551775_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.3e-98	39.1
WP_010619418.1\|551766_552600_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010619417.1\|552757_553027_-	hypothetical protein	NA	NA	NA	NA
WP_147656751.1\|553154_555530_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_010619415.1\|555560_556595_-	lactonase family protein	NA	NA	NA	NA
WP_010619414.1\|556683_557181_+	hypothetical protein	NA	NA	NA	NA
WP_147656753.1\|557274_557727_+	transcriptional repressor	NA	NA	NA	NA
WP_010619412.1\|557985_559212_+	N-acetylmuramoyl-L-alanine amidase	J3RJW9	Listeria_phage	4.1e-14	31.6
WP_010619411.1\|559247_560033_-	YibE/F family protein	NA	NA	NA	NA
WP_147656755.1\|560029_561145_-	YibE/F family protein	NA	NA	NA	NA
WP_010619408.1\|561488_561923_-	universal stress protein	NA	NA	NA	NA
WP_147656757.1\|561994_563590_-	amidohydrolase family protein	NA	NA	NA	NA
WP_147656759.1\|563613_564204_-	hypothetical protein	NA	NA	NA	NA
WP_010619405.1\|564406_564655_+	hypothetical protein	NA	NA	NA	NA
WP_147656761.1\|564810_566007_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-25	32.8

DBSCAN-SWA_3

806074 : 813485

Bacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147656976.1\|806074_807001_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.6e-42	37.7
WP_033445309.1\|806943_807432_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147656978.1\|807793_808534_+	glucose 1-dehydrogenase	A0A2P0VP75	Tetraselmis_virus	6.2e-05	24.4
WP_010619155.1\|808726_809287_+	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_010619154.1\|809368_809794_-	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	9.9e-32	42.8
WP_147656979.1\|809954_810356_+	type II toxin-antitoxin system HicB family antitoxin	A0A090DBV2	Clostridium_phage	1.8e-06	31.8
WP_029327485.1\|810432_810918_-	hypothetical protein	NA	NA	NA	NA
WP_010619151.1\|811101_811797_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.0e-30	33.9
WP_147656981.1\|812363_813485_-	zinc-binding dehydrogenase	A0A2K9L7I1	Tupanvirus	9.3e-13	27.8

DBSCAN-SWA_4

1387112 : 1442933

Lactobacillus_phage(18.75%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002816285.1\|1387112_1387364_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_029327644.1\|1387414_1388257_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.0e-157	99.6
WP_147657454.1\|1388489_1389245_+	hypothetical protein	NA	NA	NA	NA
WP_147657455.1\|1389335_1389884_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_147657457.1\|1389965_1390628_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_147657459.1\|1390909_1392166_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	6.0e-85	42.9
WP_147657461.1\|1397696_1399037_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_147657905.1\|1399474_1400863_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_147657463.1\|1400880_1402083_+	cation:proton antiporter	NA	NA	NA	NA
WP_147657464.1\|1402116_1404420_-	AAA family ATPase	NA	NA	NA	NA
WP_029327638.1\|1404759_1405779_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_147657466.1\|1405799_1406726_+	exopolyphosphatase	NA	NA	NA	NA
WP_125547835.1\|1406968_1408252_+\|transposase	ISL3 family transposase	A0A2R2ZGN7	Clostridioides_phage	5.9e-11	21.8
WP_010620797.1\|1408303_1408771_-	DNA starvation/stationary phase protection protein	A0A291I9P0	Lactobacillus_phage	1.0e-13	28.4
WP_147657468.1\|1408921_1410190_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_147657470.1\|1410202_1411162_+	IpaB/EvcA family protein	NA	NA	NA	NA
WP_147657472.1\|1411183_1411882_+	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	6.8e-22	30.9
WP_147657474.1\|1411901_1412231_+	hypothetical protein	NA	NA	NA	NA
WP_147657476.1\|1412256_1413102_+	DUF72 domain-containing protein	A0A2R3ZR64	Marseillevirus	5.4e-13	26.7
WP_147657478.1\|1413204_1415259_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	7.3e-88	35.9
WP_147657480.1\|1415313_1416093_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA
WP_010620789.1\|1416089_1416668_+	ribonuclease M5	NA	NA	NA	NA
WP_010620788.1\|1416657_1417548_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_010620787.1\|1417639_1417879_+	hypothetical protein	NA	NA	NA	NA
WP_147657482.1\|1417972_1418827_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_147657484.1\|1418948_1419863_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_147657486.1\|1419855_1420563_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.3e-16	29.5
WP_010620783.1\|1420555_1421353_+	metal ABC transporter permease	NA	NA	NA	NA
WP_147657488.1\|1421523_1422345_+	pur operon repressor	NA	NA	NA	NA
WP_147657490.1\|1422377_1423757_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	8.2e-27	35.4
WP_010620780.1\|1423829_1424810_+	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	9.2e-41	32.9
WP_010620779.1\|1424868_1425222_+	DUF3899 domain-containing protein	NA	NA	NA	NA
WP_010620778.1\|1425515_1426916_+	amino acid permease	NA	NA	NA	NA
WP_147657492.1\|1426969_1427779_-	sugar-phosphatase	NA	NA	NA	NA
WP_147657494.1\|1427785_1429150_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.2e-27	31.8
WP_147657496.1\|1429164_1429989_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_147657498.1\|1430137_1430518_+	VOC family protein	NA	NA	NA	NA
WP_010620773.1\|1430591_1431032_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_010620772.1\|1431077_1431698_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_010620771.1\|1431899_1433507_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.1e-138	47.6
WP_010620770.1\|1433736_1435014_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_010620769.1\|1435125_1435377_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_147657500.1\|1435345_1437205_-\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.7e-99	39.3
WP_076621487.1\|1437219_1438146_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-41	37.7
WP_010620867.1\|1438091_1438616_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_133278297.1\|1438739_1439990_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_147657502.1\|1440087_1440789_+	sortase	NA	NA	NA	NA
WP_010620766.1\|1440845_1441310_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_133278298.1\|1441454_1442036_+	LemA family protein	A0A1X9IGG1	Lactococcus_phage	1.5e-14	34.5
WP_010620764.1\|1442045_1442933_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

1535777 : 1600014

Streptococcus_phage(26.09%)

transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010620546.1\|1535777_1536815_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA	NA	NA	NA
WP_147657568.1\|1536889_1538267_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.1e-47	40.8
WP_147657570.1\|1538309_1540268_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.1e-56	30.4
WP_010620548.1\|1540471_1541104_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_010620549.1\|1541265_1541550_+	co-chaperone GroES	A0A221S331	uncultured_virus	1.6e-06	32.2
WP_010620550.1\|1541578_1543204_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.8e-156	53.0
WP_010620551.1\|1543434_1545270_+	APC family permease	NA	NA	NA	NA
WP_147657572.1\|1545407_1546943_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_147657909.1\|1547001_1547724_-\|holin	antiholin LrgB	NA	NA	NA	NA
WP_010620554.1\|1547831_1548269_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_010620555.1\|1548596_1549703_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_029327620.1\|1549728_1550373_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.8e-43	43.3
WP_010620557.1\|1550432_1551785_+	DEAD/DEAH box helicase family protein	A0A1X9I5S6	Streptococcus_phage	6.9e-71	40.9
WP_010620558.1\|1551777_1552467_+	ComF family protein	NA	NA	NA	NA
WP_010620559.1\|1552604_1553162_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_147656485.1\|1553243_1553732_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_133278299.1\|1553674_1554601_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.6e-42	37.7
WP_010620560.1\|1554755_1557119_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_029327622.1\|1557226_1558291_+	peptide chain release factor 2	NA	NA	NA	NA
WP_010620562.1\|1558378_1559533_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_010620563.1\|1559710_1560016_+	PspC domain-containing protein	NA	NA	NA	NA
WP_010620564.1\|1560012_1560366_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_010620565.1\|1560448_1561387_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_010620566.1\|1561406_1562267_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_010620567.1\|1562268_1563294_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010620568.1\|1563310_1564204_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.8e-67	47.3
WP_010620569.1\|1564294_1565236_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	8.2e-87	50.8
WP_010620570.1\|1565388_1567389_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_147657574.1\|1567421_1570271_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.7e-300	53.9
WP_010620572.1\|1570412_1570952_+	membrane protein	NA	NA	NA	NA
WP_010620573.1\|1571091_1571967_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	5.0e-06	27.7
WP_010620574.1\|1571966_1572983_+	YvcK family protein	A1IMD5	Streptococcus_phage	3.4e-94	54.1
WP_010620575.1\|1572987_1573929_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	2.0e-48	37.1
WP_010620576.1\|1573969_1574482_-	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_010620577.1\|1574532_1575126_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.9e-55	54.3
WP_010620578.1\|1575703_1576732_+	SorC family transcriptional regulator	NA	NA	NA	NA
WP_010620579.1\|1576798_1577809_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_010620580.1\|1577907_1579110_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_010620581.1\|1579226_1579982_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_010620582.1\|1580074_1581394_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.3e-172	69.4
WP_147657576.1\|1581466_1582744_+	hypothetical protein	NA	NA	NA	NA
WP_010620584.1\|1582841_1583078_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_147657577.1\|1583146_1583902_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_010620586.1\|1583905_1586251_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.4e-89	38.8
WP_010620587.1\|1586284_1586758_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-45	60.0
WP_147657579.1\|1586917_1588366_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_010620589.1\|1588362_1589106_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-32	38.4
WP_010620590.1\|1589135_1589711_-	hypothetical protein	NA	NA	NA	NA
WP_010620591.1\|1589831_1590533_+	uracil-DNA glycosylase	V5NWU7	Chelonid_alphaherpesvirus	9.8e-45	44.1
WP_010620592.1\|1590590_1591562_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_033445284.1\|1591628_1592105_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_147657581.1\|1592097_1592328_+	hypothetical protein	NA	NA	NA	NA
WP_147657583.1\|1592406_1592613_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_147657585.1\|1592656_1593583_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.1e-43	37.7
WP_147657911.1\|1593525_1594017_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010620596.1\|1594083_1594617_-	exonuclease	M1PFD8	Streptococcus_phage	6.6e-25	38.5
WP_010620597.1\|1594644_1595409_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	5.7e-62	49.6
WP_147657588.1\|1595555_1596458_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_147657589.1\|1596481_1598581_+	sodium:proton antiporter	NA	NA	NA	NA
WP_147657317.1\|1598635_1600014_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-47	41.2

DBSCAN-SWA_6

1607131 : 1667762

Streptococcus_phage(15.0%)

transposase,integrase

attL 1607870:1607929|attR 1665967:1667730

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010620866.1\|1607131_1607830_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.1e-35	44.8
WP_147657591.1\|1607844_1609644_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.6e-99	39.3
1607870:1607929	attL	NA	NA	NA	NA
WP_010620606.1\|1609714_1610425_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_147657593.1\|1610569_1611955_+	muramidase	A0A249Y0X5	Enterococcus_phage	6.8e-13	35.1
WP_010620608.1\|1612180_1612903_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	Q332B8	Clostridium_botulinum_C_phage	6.9e-09	35.7
WP_010620609.1\|1613016_1614102_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_033445290.1\|1614396_1614705_+	hypothetical protein	NA	NA	NA	NA
WP_010620611.1\|1615137_1615953_-	LicD family protein	A0A1V0SD50	Indivirus	1.9e-07	48.1
WP_010620612.1\|1616067_1616505_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010620613.1\|1616702_1617119_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_010620614.1\|1617795_1618296_+	N-acetyltransferase	NA	NA	NA	NA
WP_147657595.1\|1618308_1619151_+	prephenate dehydratase	NA	NA	NA	NA
WP_010620616.1\|1619150_1619618_+	pyridoxamine 5'-phosphate oxidase-related fmn-binding protein	NA	NA	NA	NA
WP_010620617.1\|1619614_1619974_-	hypothetical protein	NA	NA	NA	NA
WP_147657597.1\|1620434_1621628_+	amidohydrolase family protein	NA	NA	NA	NA
WP_147657599.1\|1621660_1622848_+	amidohydrolase family protein	NA	NA	NA	NA
WP_147657601.1\|1623173_1625297_+	hypothetical protein	NA	NA	NA	NA
WP_147657603.1\|1625645_1626926_+	thiolase family protein	NA	NA	NA	NA
WP_147657605.1\|1626941_1627376_+	hypothetical protein	NA	NA	NA	NA
WP_147657607.1\|1627456_1628371_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_147657609.1\|1628490_1629237_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-16	29.9
WP_147657611.1\|1631330_1632269_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_147657317.1\|1632409_1633788_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-47	41.2
WP_147657613.1\|1634108_1635272_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5S7K9	Streptococcus_phage	2.1e-63	36.7
WP_147657615.1\|1635325_1635970_-	helix-turn-helix domain-containing protein	A0A0P0IV68	Lactobacillus_phage	8.0e-09	50.8
WP_147657617.1\|1636119_1636332_+	helix-turn-helix domain-containing protein	D7RWM4	Brochothrix_phage	5.6e-12	56.9
WP_147657619.1\|1636378_1636666_+	hypothetical protein	NA	NA	NA	NA
WP_147657621.1\|1636830_1637706_+	DnaD domain protein	C8CGZ1	Staphylococcus_phage	3.8e-38	38.6
WP_147657623.1\|1637718_1638780_+	ATP-binding protein	A0A1P8BKV8	Lactococcus_phage	2.9e-16	28.0
WP_147657625.1\|1638772_1639219_+	hypothetical protein	NA	NA	NA	NA
WP_147657627.1\|1639215_1639512_+	hypothetical protein	NA	NA	NA	NA
WP_147657629.1\|1639681_1640008_+	hypothetical protein	NA	NA	NA	NA
WP_147657631.1\|1640192_1640531_+	hypothetical protein	NA	NA	NA	NA
WP_147657632.1\|1640503_1640857_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_147657634.1\|1640861_1641347_+	hypothetical protein	NA	NA	NA	NA
WP_147657636.1\|1641343_1641712_+	hypothetical protein	NA	NA	NA	NA
WP_147657638.1\|1641756_1642314_+	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	3.2e-06	31.5
WP_147657640.1\|1643357_1644128_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_147657642.1\|1644260_1644935_+	hypothetical protein	NA	NA	NA	NA
WP_010620624.1\|1644966_1645716_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-37	34.8
WP_147657644.1\|1645712_1647179_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_010620626.1\|1647206_1648379_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_010620627.1\|1648519_1649377_+	glucose transporter GlcU	NA	NA	NA	NA
WP_010620628.1\|1649472_1650819_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_010620629.1\|1650847_1651270_+	hypothetical protein	NA	NA	NA	NA
WP_147657646.1\|1651330_1652362_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_010620631.1\|1652534_1652864_+	hypothetical protein	NA	NA	NA	NA
WP_010620861.1\|1654950_1656189_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	4.0e-81	48.2
WP_056973818.1\|1656543_1656912_+	hypothetical protein	NA	NA	NA	NA
WP_010620634.1\|1657004_1658015_+	serine hydrolase	A0A1V0SLG8	Klosneuvirus	7.6e-06	30.8
WP_010620635.1\|1658051_1658756_-	glutamine amidotransferase	NA	NA	NA	NA
WP_010620636.1\|1658752_1660102_-	Mur ligase family protein	NA	NA	NA	NA
WP_010620637.1\|1660307_1660892_+	thymidine kinase	E0YIP8	Lactococcus_phage	3.0e-47	52.6
WP_029327625.1\|1660906_1661989_+	peptide chain release factor 1	NA	NA	NA	NA
WP_010620639.1\|1661981_1662857_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_010620640.1\|1662837_1663866_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	3.9e-50	38.6
WP_010620641.1\|1663934_1665197_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.6e-96	52.8
WP_147657648.1\|1665287_1665917_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_147657650.1\|1665983_1667762_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.6e-99	39.3
1665967:1667730	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1844903 : 1902810

Staphylococcus_phage(13.04%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010619754.1\|1844903_1845827_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_010619755.1\|1845826_1847893_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_147657771.1\|1848037_1849885_+	DNA primase	A0A1S5RH72	Helicobacter_phage	1.2e-44	31.7
WP_147657773.1\|1849899_1851132_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.0e-37	37.6
WP_010619758.1\|1851340_1852036_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_147657775.1\|1852032_1853142_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_010619760.1\|1853159_1854395_+	peptidase T	NA	NA	NA	NA
WP_147657777.1\|1854531_1857120_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	8.5e-126	37.2
WP_010619762.1\|1857187_1857376_-	DUF2929 family protein	NA	NA	NA	NA
WP_147657779.1\|1857501_1860855_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	6.2e-153	32.5
WP_010619764.1\|1861064_1862822_+	pyruvate kinase	NA	NA	NA	NA
WP_010619765.1\|1862959_1863838_+	S1 RNA-binding protein	NA	NA	NA	NA
WP_147657781.1\|1863859_1864756_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.8e-44	35.0
WP_147657783.1\|1864829_1865189_+	N-acetyltransferase	NA	NA	NA	NA
WP_147657785.1\|1865178_1865937_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.4e-07	33.3
WP_010619769.1\|1865933_1866518_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.1e-12	41.0
WP_010619770.1\|1866518_1867241_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_147657917.1\|1867578_1868127_+	ECF transporter S component	NA	NA	NA	NA
WP_147657787.1\|1868222_1869266_+	hypothetical protein	NA	NA	NA	NA
WP_147657789.1\|1869255_1870704_+	RecQ family ATP-dependent DNA helicase	A0A1V0SGM9	Hokovirus	7.7e-52	38.3
WP_010619775.1\|1870762_1871371_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_010619776.1\|1871394_1872072_+	(d)CMP kinase	NA	NA	NA	NA
WP_147657791.1\|1872158_1873424_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_010619778.1\|1873522_1874833_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_010619779.1\|1875084_1875360_+	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	1.2e-25	67.4
WP_147657793.1\|1875492_1876761_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_010620867.1\|1876877_1877402_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_076621487.1\|1877347_1878274_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-41	37.7
WP_147657794.1\|1878288_1880085_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	3.6e-99	39.3
WP_029327537.1\|1880072_1880957_-	YitT family protein	M1Q1P6	Streptococcus_phage	8.0e-52	37.7
WP_010619782.1\|1881095_1882295_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.1e-47	53.7
WP_010619783.1\|1882314_1884201_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.7e-51	29.8
WP_010619784.1\|1884217_1885168_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.1e-118	63.4
WP_010619785.1\|1885185_1885674_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	6.2e-30	42.8
WP_147657796.1\|1885724_1886492_-	hemolysin III family protein	NA	NA	NA	NA
WP_010619787.1\|1886537_1887383_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	3.0e-16	35.2
WP_010619788.1\|1887439_1888348_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_010619789.1\|1888361_1888985_+	YpmS family protein	NA	NA	NA	NA
WP_010619790.1\|1888986_1889208_+	YozE family protein	NA	NA	NA	NA
WP_010619791.1\|1889351_1889708_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_010619792.1\|1889697_1889964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010619793.1\|1890223_1891087_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_010619794.1\|1891079_1891868_+	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	5.3e-23	38.0
WP_010619795.1\|1891895_1892768_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_010619796.1\|1892878_1894978_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.1e-102	36.8
WP_002816285.1\|1895407_1895659_+\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_029327644.1\|1895712_1896555_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.0e-157	99.6
WP_147657798.1\|1896958_1898008_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_010619799.1\|1898213_1899755_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_010619800.1\|1899910_1900819_+	tyrosine recombinase XerC	A0A1I9SC88	Mycobacterium_phage	2.0e-13	28.6
WP_010619801.1\|1900837_1901398_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010619802.1\|1901397_1902810_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IEP8	Erwinia_phage	1.5e-28	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042371

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection