CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042941	Atlantibacter hermannii strain ATCC 33651 chromosome, complete genome	1 crisprs	DinG,csa3,cas3,DEDDh	1	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042941_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042941_1

3091-3204

Orphan

Consensus_repeat	Method
CTCGTTTGTACGGTGGAAGGGTTCCGTTCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042941_1

>merge|NZ_CP042941|1|3091-3204|PILER-CR
CGGTGGAAGGGTTCCGTTCGCTTTTGCAGCGGGGGCTTTTTTGTAGGGTGGAAGGGTTCTGTTCGCCAGGCGGCTGGCGGGGCCTCGTTTGTACAGAGGAAGGGTTCCGTTCGC

>NZ_CP042941|1|1|3091-3204|PILER-CR
CGGTGGAAGGGTTCCGTTCGCTTTTGCAGCGGG	GGCTTTTTTGTA
GGGTGGAAGGGTTCTGTTCGCCAGGCGGCTGGC	GGGGCCTCGTTTGTACA
GAGGAAGGGTTCCGTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042941.1\|WP_148051467.1\|9463_9838_-\|DUF1425-domain-containing-protein	unknown	unknown	gnl\|CDD\|227920
NZ_CP042941.1\|WP_148051466.1\|8001_8826_-\|thiamine-kinase	unknown	unknown	gnl\|CDD\|182349
NZ_CP042941.1\|WP_002435156.1\|6963_7989_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP042941.1\|WP_002435158.1\|6379_6922_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179896
NZ_CP042941.1\|WP_002435145.1\|9839_10199_-\|purine-nucleoside-phosphoramidase	unknown	unknown	gnl\|CDD\|182648
NZ_CP042941.1\|WP_002438740.1\|908_2441_+\|SpoVR-family-protein	unknown	unknown	gnl\|CDD\|236973
NZ_CP042941.1\|WP_148051468.1\|11851_14026_+\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	unknown	unknown	gnl\|CDD\|236640
NZ_CP042941.1\|WP_043865491.1\|8803_9451_-\|penicillin-binding-protein-activator-LpoB	unknown	unknown	gnl\|CDD\|225951
NZ_CP042941.1\|WP_002435162.1\|4123_4663_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NZ_CP042941.1\|WP_002435144.1\|10429_11479_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NZ_CP042941.1\|WP_002435160.1\|4853_6158_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172

Protein	Function_ID	Function_description	E-value
NZ_CP042941.1\|WP_148051467.1\|9463_9838_-\|DUF1425-domain-containing-protein	gnl\|CDD\|227920	COG5633, COG5633, Predicted periplasmic lipoprotein [General function prediction only].	2.36314e-38
NZ_CP042941.1\|WP_148051466.1\|8001_8826_-\|thiamine-kinase	gnl\|CDD\|182349	PRK10271, thiK, thiamine kinase; Provisional.	8.64745e-88
NZ_CP042941.1\|WP_002435156.1\|6963_7989_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP042941.1\|WP_002435158.1\|6379_6922_-\|alpha/beta-hydrolase	gnl\|CDD\|179896	PRK04940, PRK04940, hypothetical protein; Provisional.	1.01755e-145
NZ_CP042941.1\|WP_002435145.1\|9839_10199_-\|purine-nucleoside-phosphoramidase	gnl\|CDD\|182648	PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.	2.01746e-81
NZ_CP042941.1\|WP_002438740.1\|908_2441_+\|SpoVR-family-protein	gnl\|CDD\|236973	PRK11767, PRK11767, SpoVR family protein; Provisional.	0
NZ_CP042941.1\|WP_148051468.1\|11851_14026_+\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	gnl\|CDD\|236640	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional.	0
NZ_CP042941.1\|WP_043865491.1\|8803_9451_-\|penicillin-binding-protein-activator-LpoB	gnl\|CDD\|225951	COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only].	8.26543e-67
NZ_CP042941.1\|WP_002435162.1\|4123_4663_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	1.94024e-106
NZ_CP042941.1\|WP_002435144.1\|10429_11479_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP042941.1\|WP_002435160.1\|4853_6158_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	7.74571e-167

>NZ_CP042941.1|WP_002438740.1|908_2441_+|SpoVR-family-protein
MAIIDSETRDSRRLSDGPDWTFDLLDIYLAEIDRVAKLYRLDTYPHQIEVITSEQMMDAYSSIGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNPCIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARGYITECEERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWRTLPKREEEKAVQAERRYPSEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYNGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGADWLDTLHFAMRDFKDESFISQFLSPKVMRDFRLFTVLDDDRNNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLRGDRSLTLRYIPHNRAPLDKGRREVLKHVHRLWGFDVTLEQQNEDGSVELLERCPPRMNTL
>NZ_CP042941.1|WP_002435162.1|4123_4663_-|glycine-zipper-2TM-domain-containing-protein
MNKSMLAGIGIGVAAALGVAAVASLNVFDSSPKYAQVVSAMPIKETVKTPRKECRNVTVTHRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDIATVAGALGGGYAGHQIQGAMQDRDTYTTTQQRCKTVYDKSEKMIGYDVTYKIGDQQGKIRMDKQPGETIPLDSKGQLVLNNNA
>NZ_CP042941.1|WP_002435160.1|4853_6158_-|NAD(P)/FAD-dependent-oxidoreductase
MTTPLKKIVIVGGGAGGLELATQLGKKLGRGKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHHFQFQLGSVIDINRENKTLTLAELRDEKGELLVPERKLAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYSANLGASGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISSAAHSELTKLGVRVLTNTMVTSAQETGLNTKDGEFIKADLMVWAAGIKAPDFMKEIGGLETNRINQLVVEPTLQTTRDADIYAIGDCASCARPEGGFVPPRAQAAHQMASLALHNILAQYKNKPLKNYVYKDHGSLVSLSNYSTVGSLMGNLMRGSMMVEGRIARFVYISLYRMHQIALHGYMKTGLMMLVGSINRVIRPRLKLH
>NZ_CP042941.1|WP_002435158.1|6379_6922_-|alpha/beta-hydrolase
MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTLHPKHDMQHLLREVDKMLQLNADDRPLICGVGLGGYWAERVGFLCDIRQAIFNPNLFPYENMEGKIDRPEEYRDIATKCVENFREKNRDRCLVLLSRNDEALDNQRSADVLQPYYEIVWDEQQSHKFKNISPHLQRIKAFKTLG
>NZ_CP042941.1|WP_002435156.1|6963_7989_-|beta-N-acetylhexosaminidase
MGPVMLDVAGFELDAEEREILNHPLVGGLILFTRNYHDPVQLRELVRQIRAASRHRLLVAVDQEGGRVQRFRDGFTRLPAAQSFVELFGEEEGSKLAFDAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSFHEDPEIALRVATQFIDGMHSAGMKTTGKHFPGHGSVMEDSHKETPRDPRSEAEIRARDMSIFKNLILDNKLDAIMPAHVIYPEVDSRPASGSPHWLKTVLRDELGFNGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNREGAVSVLDNLSPINAERVTHLYHKGSFSRSELLASPRWKQVNRALEAQHERWQAHKAGL
>NZ_CP042941.1|WP_148051466.1|8001_8826_-|thiamine-kinase
MQYPKPSNAALTTLLHSRFPAAKAAGSLSLLPGSSGHSLRLEWAGIPLVARRDNGTLQAGVSLSRHYRALKRLTPGLGPRPYALGYGWLITEFIPGDVTPALPDASALAGLLYTLHHQQRFGWRISLLPLLMSYWQHSDPDRRTPLWLRTLRRLSAQGEPQPLRLAPLHMDLHAGNIVRSADSLRLIDWEYAGDGDVALEIAAASMDEDERASLVRHYAHLAALDPHQLRVQVARWRPWTLALMAGWYERHYGQTRDRQFLTLANEAWNRLENI
>NZ_CP042941.1|WP_043865491.1|8803_9451_-|penicillin-binding-protein-activator-LpoB
MRGLPRFWLLATVALILSGCVMRGQQEPAPVDQAQPTPQQPVPPTEPVPTVPSVPAVPPQPGPIEHQEPTTPEPKVRQYDWSGAIQPMVGKMLQAGGVNAGSVLLVDSVNNRTNGSLQTGPATEALRNALANNNTFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSNASGNVGSPTLQMQLMLVQTGEIIWSGKGAVSQTQ
>NZ_CP042941.1|WP_148051467.1|9463_9838_-|DUF1425-domain-containing-protein
MKRACIFALLSVMVLAGCSSPPEIPVNDKQTLVMDASVMAAGVMAEKPELSRQSGKPVATSTLYNEKDVPVTLNYQFYWYEESGLELHPLDKSATVTIPARSRTVLSAASPFLGATQVRLYLWL
>NZ_CP042941.1|WP_002435145.1|9839_10199_-|purine-nucleoside-phosphoramidase
MAEETIFSKIIRREIPADIVFQDELVTAFRDISPQAPTHILIVPNVLIPTVNDVTPEHEQALGRMLTVAAKIAEQEGIAEDGYRLIMNCNRHGGQEVYHIHMHLLGGRALGPMLSHKGL
>NZ_CP042941.1|WP_002435144.1|10429_11479_-|NAD(P)-dependent-alcohol-dehydrogenase
MKVSGYAALSPTAPLAPFQVERRTPRPDDVTLEILYCGVCHSDLHQARNDWGFSQYPLVPGHEIIGRVTAVGDNVTKFKPGDLAGIGCMVDSCRECHPCKQGLEQYCEEGNIQTYNGQDRFDHQPTYGGYSKAIIASEDFVLRIPQGLDLKGAAPLLCAGITTWSPLKRWKVGEGSKVAVIGLGGLGHMALKLANGLGADVTLFTRSPGKEEDARRLGAHHVIISTDPSHMAKVNNQFDLIIDTVPYTHDINPYLPTLTLDGTLVFVGLLGELQPYINTVPLIIGRRSVAGSCIGGIAETQEMLDFCAEKGIVSDVEMIQMQDINEAYERMLKSDVKYRFVIDMASLGS
>NZ_CP042941.1|WP_148051468.1|11851_14026_+|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE
MSFVFNSGKTSLPHRSLLAMCICAALPVNTAFAAPQSEDTVLVEASASPQQADESQDYSVKTTRAGTKMMMVQRDIPQSVSVVSEQRMQDQKLQTLGDVLSNTTGISASVADSDRISYYSRGFLIDNYMVDGIPTFYETRWNLGDSLSDTALLERVEIVRGATGLMTGPGNPSAAVNMVRKRADSHEFKGDVTAEYGSWDKQRYVADVQSPLTDDGRIRGRVVAGYQNNDSWLDRYNSEKKFFYSVLDVDLTDMTRFAVGYEYQDINVNSKTWGGLPRWYTDGSLVGHNKHDSTAPGWAYNDKDFNKVFATLTQRFDNNWELTLNGTHTEMNLDSKELYLDGLVDKTTGLMESFYGASYPVVGGTGYNTGKRKVDALDLYASGPYELLGRQHQFMVGANYSNQRNRYMNTWANIGPDELGSYYDYNGNFPQTQWGELALAQADTTHIKSAYTATRISLADPLHLIVGARYTQWSSDTLTQNIEKNNTTPYAGLVFDINENWSTYASYTSVFQPQTVRDINGRYLAPITGNNYELGVKSDWMDSRLTTSLAVFRIEQDNLGTSTGQIIPGSAGETAYTEADGTTSKGVEFEINGALTDYWQMTFGATRYVAEDSDGKAFNPNLPRTTVKLFTSYNLPMLQELTVGGGVNWQNRVYQDVATPYGTFRAEQGSYALVDLFGRYQVTKSFAIQANLNNLFNKEYDTKVGQSYIYGAPRNVSVTANYRF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042941_1	1.2\|3169\|17\|NZ_CP042941\|PILER-CR	3169-3185	17	NZ_CP042941.1	3066-3082	0	1.0

1. spacer 1.2|3169|17|NZ_CP042941|PILER-CR matches to position: 3066-3082, mismatch: 0, identity: 1.0

caggcggctggcggggc	CRISPR spacer
caggcggctggcggggc	Protospacer
*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

602501 : 704960

Enterobacteria_phage(35.29%)

tail,protease,lysis,terminase,tRNA,portal,capsid,head,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040460344.1\|602501_603236_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002438115.1\|603366_604692_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	3.9e-42	29.9
WP_002438116.1\|604739_605123_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	1.4e-32	70.9
WP_142984768.1\|605439_606120_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.2e-55	51.6
WP_148051694.1\|606160_607210_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002438131.1\|607415_607835_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.7e-13	40.2
WP_043866686.1\|607915_608617_+	DTW domain-containing protein	NA	NA	NA	NA
WP_148051695.1\|608649_611307_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_040460347.1\|611421_612777_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002438135.1\|612818_613142_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002438138.1\|613138_613594_-	DUF4385 domain-containing protein	A0A222YVL1	Synechococcus_phage	7.3e-33	48.0
WP_148051696.1\|619392_621966_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	3.4e-127	35.0
WP_148051697.1\|622096_622828_-	polyphenol oxidase	NA	NA	NA	NA
WP_002437787.1\|622824_623805_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_142984777.1\|623941_624679_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002437785.1\|624944_625280_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_121497579.1\|625378_625426_+	hypothetical protein	NA	NA	NA	NA
WP_148051698.1\|625524_626685_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_043866616.1\|626732_627854_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002437782.1\|627863_628934_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	3.8e-88	50.5
WP_002437781.1\|629195_629570_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_121497580.1\|629785_630271_+	YfiR family protein	NA	NA	NA	NA
WP_043866618.1\|630263_631484_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_148051699.1\|631501_631984_+	OmpA family protein	NA	NA	NA	NA
WP_148051700.1\|631987_633367_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_148053051.1\|633417_633783_-	DUF2946 family protein	NA	NA	NA	NA
WP_148051701.1\|633977_634160_-	hypothetical protein	NA	NA	NA	NA
WP_148051702.1\|634205_634865_-	hypothetical protein	NA	NA	NA	NA
WP_002437770.1\|635000_635348_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002437769.1\|635389_636157_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_148053052.1\|636187_636736_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002437767.1\|636754_637003_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002437766.1\|637261_638623_-	signal recognition particle protein	NA	NA	NA	NA
WP_002437765.1\|638791_639583_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_072042738.1\|639596_640883_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002437762.1\|640918_641509_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002437760.1\|641629_642508_+	NAD(+) kinase	NA	NA	NA	NA
WP_043866622.1\|642593_644255_+	DNA repair protein RecN	NA	NA	NA	NA
WP_040460277.1\|644476_644815_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_148051703.1\|644867_645386_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_148051704.1\|645375_645666_-	RnfH family protein	NA	NA	NA	NA
WP_072042739.1\|645655_646132_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002437749.1\|646244_646727_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.8e-29	48.1
WP_002437748.1\|646764_647934_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_148051705.1\|647943_650076_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.8e-26	28.7
WP_002437746.1\|650099_651455_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_148051706.1\|651555_663801_-	BapA prefix-like domain-containing protein	NA	NA	NA	NA
WP_148051707.1\|664946_665765_+	hypothetical protein	NA	NA	NA	NA
WP_148051708.1\|665905_667174_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.0e-214	84.8
WP_148051709.1\|667174_667594_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	5.5e-35	57.3
WP_148051710.1\|669671_673454_-	DUF1983 domain-containing protein	O64335	Escherichia_phage	0.0e+00	67.1
WP_148051711.1\|673512_674082_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	4.1e-73	73.5
WP_148053053.1\|674140_674521_-	hypothetical protein	G8C7Q7	Escherichia_phage	2.3e-48	66.4
WP_148051712.1\|674660_675380_-	peptidase P60	K7P6F5	Enterobacteria_phage	6.6e-129	89.3
WP_148051713.1\|675381_676137_-\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	6.9e-129	86.5
WP_148051714.1\|676133_676472_-\|tail	phage tail protein	K7PHJ6	Enterobacteria_phage	6.0e-56	90.2
WP_148051715.1\|676471_679759_-\|tail	phage tail tape measure protein	A0A220NRN7	Escherichia_phage	0.0e+00	81.8
WP_148051716.1\|679793_680057_-	DUF4035 domain-containing protein	K7P7L5	Enterobacteria_phage	1.5e-35	81.6
WP_148051717.1\|680080_680482_-\|tail	phage tail protein	K7P7C2	Enterobacteria_phage	2.0e-58	83.5
WP_148051718.1\|680542_681016_-\|tail	phage tail protein	A0A220NRQ0	Escherichia_phage	3.4e-65	84.8
WP_148051719.1\|681075_681423_-	DUF3168 domain-containing protein	A0A220NRP0	Escherichia_phage	1.7e-26	53.1
WP_148051720.1\|681419_681869_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	80.5
WP_148051721.1\|681865_682207_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	5.1e-31	60.7
WP_148051722.1\|682215_682539_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	9.1e-38	69.4
WP_148051723.1\|682538_682724_-	hypothetical protein	K7PHI6	Enterobacteria_phage	5.1e-09	54.4
WP_148051724.1\|682770_683985_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	2.6e-202	90.3
WP_148051725.1\|683995_684850_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	3.8e-123	79.6
WP_148051726.1\|684861_686166_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	2.3e-220	86.9
WP_148051727.1\|686165_687923_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	91.5
WP_148051728.1\|687922_688396_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.7e-77	89.8
WP_148051729.1\|688587_688788_-	hypothetical protein	Q6UAR8	Klebsiella_phage	1.2e-08	87.9
WP_148051730.1\|688784_689135_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.0e-50	80.7
WP_148051731.1\|689293_690358_-	acyltransferase family protein	NA	NA	NA	NA
WP_148051732.1\|690531_690999_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.4e-39	62.9
WP_148051733.1\|690995_691622_-	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	2.5e-92	79.7
WP_148051734.1\|691618_691903_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	6.8e-21	54.3
WP_148051735.1\|691892_692273_-	hypothetical protein	F1C592	Cronobacter_phage	2.8e-46	79.4
WP_148051736.1\|692511_693417_-	S49 family peptidase	NA	NA	NA	NA
WP_148051737.1\|693975_694734_-	antitermination protein	K7PGU5	Enterobacteria_phage	4.1e-89	66.7
WP_148051738.1\|694751_695741_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.9e-120	60.8
WP_148051739.1\|695748_696549_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	3.7e-104	72.2
WP_148051740.1\|696564_696951_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.0e-59	86.0
WP_148051741.1\|696947_697268_-	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	8.2e-23	50.9
WP_148053054.1\|697261_698458_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.2e-103	80.1
WP_148051742.1\|698454_698898_-	PerC family transcriptional regulator	Q8SBF0	Shigella_phage	2.2e-13	28.6
WP_148051743.1\|698894_699767_-	GntR family transcriptional regulator	U5P0A0	Shigella_phage	4.4e-42	85.7
WP_072042664.1\|699756_699936_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.3e-13	69.8
WP_148051744.1\|700099_700651_-	DNA-binding protein	S5FXP0	Shigella_phage	7.0e-62	62.8
WP_148051745.1\|700695_700896_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	8.7e-23	81.5
WP_148051746.1\|700984_701659_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	6.6e-115	86.4
WP_148051747.1\|701869_702352_-	hypothetical protein	NA	NA	NA	NA
WP_148051748.1\|703154_703499_+	hypothetical protein	NA	NA	NA	NA
WP_148051749.1\|704006_704288_+	hypothetical protein	A0A077KAZ4	Edwardsiella_phage	2.8e-27	70.1
WP_148051750.1\|704291_704960_+	DUF551 domain-containing protein	Q858C8	Salmonella_phage	1.0e-14	33.0

DBSCAN-SWA_2

744557 : 754150

Mycobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002434666.1\|744557_745622_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.7e-115	63.5
WP_148051768.1\|745711_746209_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	3.4e-31	51.3
WP_043866567.1\|746316_747405_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_002434661.1\|747656_748193_+	hypothetical protein	NA	NA	NA	NA
WP_148051769.1\|748481_751052_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	8.1e-28	22.5
WP_002434658.1\|751161_752154_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_148053056.1\|752272_753397_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	6.5e-06	36.4
WP_002434654.1\|753523_754150_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.1e-34	48.8

DBSCAN-SWA_3

3897881 : 3908880

Escherichia_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148052840.1\|3897881_3898343_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	4.7e-27	41.7
WP_148052841.1\|3898422_3899706_+	MFS transporter	NA	NA	NA	NA
WP_148052842.1\|3899744_3900503_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_148052843.1\|3900852_3903285_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	0.0e+00	81.8
WP_148052844.1\|3903918_3904695_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	1.2e-91	71.7
WP_002435798.1\|3904751_3905345_+	molecular chaperone	A0A077SLS7	Escherichia_phage	5.4e-68	63.3
WP_148052845.1\|3905344_3905881_+	ferredoxin-type protein NapF	A0A077SLP0	Escherichia_phage	4.9e-44	50.9
WP_043864946.1\|3906120_3907599_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-194	72.1
WP_148052846.1\|3907758_3908880_+	DUF4172 domain-containing protein	A0A1V0E025	Clostridioides_phage	2.4e-08	28.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage