CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042914	Roseimaritima ulvae strain UC8 chromosome, complete genome	19 crisprs	DinG,cas3,csa3,WYL,RT,PD-DExK	2	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042914_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_1

11119-11230

Orphan

Consensus_repeat	Method
GTAGCTACGCTCGCCAGAGCGTGGGA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP042914_1

>merge|NZ_CP042914|1|11119-11230|CRISPRCasFinder
GTAGCTACGCTCGCCAGAGCGTGGGAGCAGGCGCCGAGCGTACGGCGATGCCCCACCGTCTGGCGACGGTAGCTACGGTAGGGGCGGTAGCTACGCTCGCCAGAGCGTGGGA

>NZ_CP042914|1|1|11119-11230|CRISPRCasFinder
GTAGCTACGCTCGCCAGAGCGTGGGA	GCAGGCGCCGAGCGTACGGCGATGCCCCACCGTCTGGCGACGGTAGCTACGGTAGGGGCG
GTAGCTACGCTCGCCAGAGCGTGGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068135978.1\|14390_15389_-\|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235735
NZ_CP042914.1\|WP_084427013.1\|18098_19580_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP042914.1\|WP_084427071.1\|4311_6810_+\|DUF1592-domain-containing-protein	unknown	unknown	gnl\|CDD\|377885
NZ_CP042914.1\|WP_068135966.1\|8194_9556_+\|glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042914.1\|WP_068135968.1\|9760_11116_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NZ_CP042914.1\|WP_068135963.1\|6900_8190_+\|DUF1552-domain-containing-protein	unknown	unknown	gnl\|CDD\|377875
NZ_CP042914.1\|WP_068135989.1\|24428_26885_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP042914.1\|WP_157609837.1\|1309_1468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135981.1\|15705_18096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100083
NZ_CP042914.1\|WP_162275942.1\|20529_22269_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP042914.1\|WP_068135958.1\|1766_2885_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NZ_CP042914.1\|WP_068135960.1\|2911_3259_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_CP042914.1\|WP_068135971.1\|11296_11776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_084427011.1\|11852_12986_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042914.1\|WP_068135974.1\|13331_14348_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|309968
NZ_CP042914.1\|WP_068135961.1\|3262_4102_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350160
NZ_CP042914.1\|WP_148080010.1\|19576_20452_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP042914.1\|WP_068136276.1\|22556_24146_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068135978.1\|14390_15389_-\|hypothetical-protein	gnl\|CDD\|235735	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated.	4.1362e-92
NZ_CP042914.1\|WP_084427013.1\|18098_19580_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.87297e-20
NZ_CP042914.1\|WP_084427071.1\|4311_6810_+\|DUF1592-domain-containing-protein	gnl\|CDD\|377885	pfam07627, PSCyt3, Protein of unknown function (DUF1588). A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also match pfam07626 and pfam07624.	6.16301e-50
NZ_CP042914.1\|WP_068135968.1\|9760_11116_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	5.00555e-107
NZ_CP042914.1\|WP_068135963.1\|6900_8190_+\|DUF1552-domain-containing-protein	gnl\|CDD\|377875	pfam07586, HXXSHH, Protein of unknown function (DUF1552). A family of proteins identified in Rhodopirellula baltica.	5.14176e-89
NZ_CP042914.1\|WP_068135989.1\|24428_26885_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.58533e-58
NZ_CP042914.1\|WP_068135981.1\|15705_18096_-\|hypothetical-protein	gnl\|CDD\|100083	cd06162, S2P-M50_PDZ_SREBP, Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.	3.05075e-10
NZ_CP042914.1\|WP_162275942.1\|20529_22269_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.81372e-20
NZ_CP042914.1\|WP_068135958.1\|1766_2885_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	3.15379e-107
NZ_CP042914.1\|WP_068135960.1\|2911_3259_+\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.86887e-18
NZ_CP042914.1\|WP_068135966.1\|8194_9556_+\|glycosyltransferase-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.04228e-17
NZ_CP042914.1\|WP_084427011.1\|11852_12986_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	5.12599e-55
NZ_CP042914.1\|WP_068135974.1\|13331_14348_-\|alpha/beta-hydrolase	gnl\|CDD\|309968	pfam05057, DUF676, Putative serine esterase (DUF676). This family of proteins are probably serine esterase type enzymes with an alpha/beta hydrolase fold.	2.36352e-06
NZ_CP042914.1\|WP_068135961.1\|3262_4102_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	2.46352e-155
NZ_CP042914.1\|WP_148080010.1\|19576_20452_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.61367e-28
NZ_CP042914.1\|WP_068136276.1\|22556_24146_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.63429e-79

>NZ_CP042914.1|WP_068135968.1|9760_11116_+|class-I-SAM-dependent-methyltransferase
MFGRETRSRRQLDAAKKLLEQLAVQLNSRVSVRLWDGTMVPLGEQVDEKLFLSISGPGVIGSLLRWPTPDNLLKHYANGHLDFHGGDALTVIEALYVRDSRKRAKKIRKSALFRTLLPFLFESSKSCVVDHTYQGNVLGRDRKQAENLDFIQFHYDVSNEFYELFLDKEMVYTCAYFTDWNNSLEQAQFDKLDMICRKLQLQPGDTFLDIGFGWGSLLCHAAQHYGVQAHGVTLAENQLQYTQEKVRRLGLEDKVTVEIRDYAHLEGKFDKVASIGMYEHVGIDNMNGYMKKVHSLLAKNGLCLMQGITRPGKATMKQFRKVNTERRLLNKYIFPGGELDHIGHLLQTMESNGLEVHDVEGWRNHYMHTCRHWCERLYARREEAIGFVGEEKYRMWMLYLAGCSLAFKNGGARLYQVLMEKHAKKEESCMPPTREHLFAAGVSHDSRRSAA
>NZ_CP042914.1|WP_068135966.1|8194_9556_+|glycosyltransferase-family-protein
MPTIRDALQQGWQLQQRGQIAQAEHVYRQVIAQVPRSAEAHVYLGIALFDQQRFVESEAAYRTGLELQGRFPIAWNNLGNALRMQNRVDEADACFARSIEQQPGYLSPLKNRGTLWIWAGHIDRGLDYYQQALQVAPEDPELHRNLGVIYLLQGRFAEGWPQYRWRWNMPGLVRPPCSAPLWQGEPLQDKTILLYPEQGLGDAIHFVRMAEVVQQHGARVLLSCDANLIPLLQSARGIDQIFPTQMTVGPVDYQASLIEVADHLQIDGQNIPAAVPYLTVSDSLQSYWQRWLSSQVGGSGRRVGICWQGNPNHHADHYRSVALREFAPLFDVEGVQWISLQHGFGSQQIAEVPFADKLLRLPEDLDRSAGAFLDTAAVMQNLDLVITTDTSTAHLAGALGVPTWVLLGKLPDWRWSLEGSTTHWYPSLRLFRQQVVGNWQGVVREMAGALAEG
>NZ_CP042914.1|WP_068135963.1|6900_8190_+|DUF1552-domain-containing-protein
MSFFASKQLDRRTVLRGAGVSMAVPWLSAMQRACAAPASHGDDQPPRRFVSLTLGLGLLGDKLNPAEPGRDYKPSPYLKALEDIRDAYTVISGTSHPGVTGGHRAEASLLTANPAGSSGNAKNSISLDQLMAKHLGDQTRFPSLVLSSSGSNSPSYTETGAMIPAQSSPSKLFTQLFIDDPKSEQRQQVQRVRHGRSIMDLVSEDARRLNGQLGAGDRQRLDQYFSSVRDLERRLAESEAWAQRPKPKVDQRKPIDIGNSNDFIGRQKLMSDMIRLALQTDSTRFISYHLGGSGGVLPIAGVDEGYHSLSHHGRNEDKIEQLMLIETEIVATWGQFLRDLAATEEHGDNLLSRTSVLLTSNLGNASSHDNRNMPVLLAGGGFRHGQHLAFDQKNNYPLPNLFVSLLQRVGLPTDQFASGTSTMTGLEMV
>NZ_CP042914.1|WP_084427071.1|4311_6810_+|DUF1592-domain-containing-protein
MSSLLRTIYGILTPFVATLARAWGQAPGVRQGIHRLATVATVCVAIAALLAATSASAADSHAPSAAVPESVRVFLENNCLDCHEGEHAEANFDVTALSDEVNADNLQRWVRSFDRVHAGEMPPADAEPPAADDRQAFLRDSAAWLKAFQNEQTARIGRVQARRLTNLQLERSLHAVLGVDIPLAKQLPDEPRSGGFTTVADGQSMSHFQLEQHLQIVDTALDEAFRRATGADAQDDERRELSARKVARQNPRRRCREPEMIGEDAVVWSSNLTFYGRLPATTAKHDGWYRFKIRASALKKPDDHGVWCSVRTGRCVSSAPLYGWVGSFCAQNEPQEWTFEAWLERGEMIEVRPGDNTLKKARFAGGQAGAGEGGPQDVPGIAIHSVDMQRIHHGPDNQGIRELLFAELTLRPARKREPAVLNSDAPKADAARLLHRFAERAFRRDVDPQEITHYVSATQQAIADGQPLLDAVRDGYRALLCSPNFLYFHEAPGRLDHHAVATRLSYFLTGAPPDDTLRRLAAEKRLHDPDVLIQQVDRLLEDHDEQFIRDFANQWLDLSEINFTEPDRKLYREFDVVVQQSMVSETETFLTDLLRRDAPTARLIDSEYTFLNNRLARFYDIDGVQGDAIQKVTLDESTRRGGVLTQGAILKVTANGTTTSPVIRGVWISERLLGESIPPPPESVPAIEPDVRGANTIRELLEKHRSDTSCASCHVKIDPPGFALENFDPAGSWRTHYFRRGNKQGAKIDPSYQWPDGASFADITEFRQRVLADPEKIAANVAEKMVVYGTGGEVSFADREAIEAMVRSTRKSDYGFRSILNAVVTSDLFLTK
>NZ_CP042914.1|WP_068135961.1|3262_4102_+|purine-nucleoside-phosphorylase
MLDLFDKIEEAKAAIEQVWDQRPRAAIILGTGLGGLVEDIEVQATIAYEDIPHFPKSTATSHRGRLVCGMLQGIPVVAMEGRFHMYEGYPLKQITLPVRVFKALGAELLVVSNACGGLNPYFQSGDIMVIEDQINLMGDNPLIGINDDRLGPRFPDMCEPYDQQLVDRVLDVARRENIPAHKGVFVAVAGPNLETRAEYRFLRTIGADVVGMSTVPEVIVAVHSGLKVVGLSVVTDMCLPDVLQPVNVEEIIATANRAEPHLRTLVRGAINTLAEIRLA
>NZ_CP042914.1|WP_068135960.1|2911_3259_+|DUF721-domain-containing-protein
MAKAKANDHYSDDRRNSKYPRKIGSIVNQLIARRGYAQVTANEQLQQVVGEAVGKDLAATVRVGNLKRGVLELYASDSVTMQELTFLKRKILRSINKAMPDGGVKNLRFRISGSG
>NZ_CP042914.1|WP_068135958.1|1766_2885_+|DNA-polymerase-III-subunit-beta
MKIICEREPLAAAFQLAASVAPARSPKEILQNVKLTVADNVATFTATDMEVGIRLEMVEGLEVETDGAALLPVARTNAILRESSDEKITIETDDSGVKILGSRSKFRLPGANPDEFPRVVGFDEESYHEIPVRLFRQMVKRTVFATDAESSRYALGGVLLELDGESVLAVGTDGRRLARMQGTGTSVGDHKTTGTSTIVPTRAIQLMERAVSDQDETVQLAARANDLLLRTSRCTIYSRLVEGRYPNWRQVFPQRENASQIDMTVGPLFAALRQAAIVTDQESRGIDFTFADGTLTMEANTAEIGESQVELPIAYDGESVTLTMDHRFVADFCKVLDAESGFILEIETSGSPALLSTEDGYGYVIMPMARDR
>NZ_CP042914.1|WP_157609837.1|1309_1468_-|hypothetical-protein
MWRLSDNRLFGRQVAQRTPPKREQQIDALSTAGIFHFSVAEVARLWTPCLSE
>NZ_CP042914.1|WP_068135971.1|11296_11776_-|hypothetical-protein
MMNPLWLGTRAWQKQLLGVVALCLVTGCSGGDSPPLAEATGQVTKAGAPLVNARVEFYPDGPGGSSYGTTDQEGKFELFYSTGDPGAALGTHKVVVIGGSTDAAAVPTAPAAAGEEAGEGTLAPVGMPGGPGRGAGTAEVKGLTAEITADGPNFITLEL
>NZ_CP042914.1|WP_084427011.1|11852_12986_-|DUF1559-domain-containing-protein
MSHVHCNVPRLFTIRDDGSPPARSAQPTRSAQPRRRGFTLVELLVVIAIIGVLVGLLLPAVQAAREAARRMSCSNNMKQLGLALHMYHDTNLKMPPASFLAGVSTQRPASWLVRVLPFMEQRAAYDQSTFSGTDWASRSDGTNLNWQTYHAMQVETLNCPSSPLPTMRTDAASSTIVALGAPANLEIQVPSYVGVAGDFNPQNVQKSKWNGHHGMSDYNGIIISIDDRNTEAVRFASITDGTSNTLAVGEQSDYMRVRESDGSISKYDQRAGNWWGGAWSGGGGGTTSASEGYWMNVSSTRVGVNYVSTQGRYRPHGIGPYWYGRPGRHTIFNSAHPGGAQFTLGDGSVRFISENIRFDILSYLANRADGEVINGEF
>NZ_CP042914.1|WP_068135974.1|13331_14348_-|alpha/beta-hydrolase
MPLPPWIPIATLSIVIAGCWQTTARAQSLSLWQKTAAQHENSVMPMPNVPFPTMGGTQIWTDHRNVAGWRLQHNAVTGHWRLLDPRDIRRAWGERQPCELKLLEATQDLDPAAAPRHVVILLHGLMRSKHSMRGLARRIEACPNPPQVIAFSYASTRFGIAEHAAALRELVEGLPGDPKLQFVGHSMGNIVVRHALADWQANGDSREVLPRVENVVMLGPPNQGAAIARRLSKLGLFEVVTGPGGMQLGPDWQQLVQGLATPPCPFAIIAGDMPALEPYNPLVDGSSDFVVSIEEARLEGASEFHTVPHLHSFLMDQDDVQTLTLRFMGLAEPPKRTE
>NZ_CP042914.1|WP_068135978.1|14390_15389_-|hypothetical-protein
MQFTAIDFETANRRSDSACQLAAVVVEAGRIVDQRCWLIRPRPFYFSGFNIQIHGIRPEDVEQEPEFADLWPEIHAFLGDRCLVAHNAAFDIKVLTACLKTHRLTLPELRFTCTRLIAKQTWPQWGRFGLKPVSDRLGIRFQHHDALEDSLACAKVLLAASIKRQCGSLEALEQTLRIERGQCGPLGYRGARLARGRTRRPTSTTSQPAASGRGARSRSAVAVGEATAIEPPQAGALVDVHRLLLRAEMVRSLAGKRVCVSGSFRSLSRDQVTALVTALGGQPLPASESPADICIQGLDDSPPNNPQATAQADVTWSEQQFLEQLVSESRFC
>NZ_CP042914.1|WP_068135981.1|15705_18096_-|hypothetical-protein
MSHPSQPPHSAPDDVPPEGMAADVVAPDGVAAEGVDADALPNEAAAAPIRLRDGLHFRSQPSGGRASYVCHDTQRGKYFHFGAAELEIARLLDGSRSVEDLAVELEALGVTWSREDIAYFLSSLVRNGLAEVTRTAGASAVEPGPPPPTPPLWPRLLSMLVSQRIPLFAADRAAIALTRRLHQAFRPAGVFVWCLLVASGLWQAIANGAEWHGELQRLFSPDTWPVLLAIWLVAKLIHESGHAVAARRHGIRVGNAGILFFMFAPLAYVDVTDAWRLPRRWARIQIALAGVYFELAIAAVAVWVWAHTSDVTIRYVAAQVAVLTGPATLLVNANPLLRLDGYYVLADLLGIPNLRMHGRRMVAGKCQAWLLGRPPQPSLLHGWQRTAALWHAVGSILFQIVWMGGLLWGILFWGGGLGIVIGGAAFLLWVVLPLARWISGLRASEQWRRYRSRLLAWSAALAGVLLLLSFAPSPLGRRIPVVVRYHDEQVARAASDGFVVDVPVRSGDPVTVGTVLVRMDDPQLRTRQAELSLDLESAHVLRRKLHNQGEHAMAAAESQRIASLSRQLTEINRQLDALTIRATRAGLVTSPRLETLQGAYLRAGDVVVRVGDEQHKELLASIHGADLQAYRRAVEEGKTLTARLRGGQSLTVQPAAPSPRASLTIPHPALVALAGGPIPLAASDRDADPQRSQPLASPHTESLSPLSAASSRRLRAGQQGMLIIGDNRSLMQRLYQRLQDSIPQSPRTSCDGYGQDGTIGLASAFLGTCDLLIGKVLDRNAVGQQSLGSRSAPKDL
>NZ_CP042914.1|WP_084427013.1|18098_19580_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSAPASQSPAGNIPAHDIAAGDVPAGNVPAGIVGAGVVSAAAAATPAAVAPPDPPVAVADDSPWIQLLASLAEQPTRSAALQHLAEQLRERYPESRLRVARGGEKLKEVFDASIGKVGVESSLYHDLAVLWPRLLSAGGGIDHVNGHRLPAEDRRSDPQCGVMLHVEGHHFLILPATASLRRVVIWQPSDADPTVQPFQQLHALAGPLATLLASRPLVAVGKAGSWLRGIRSRFMLLAMVGLAVLALIPVSYRVRCTALLEPVEQRLIAAPFDATLLDCHVRPGDAVRRDQVLVTLDGRPLQMEREALLAERAQAEKKHAVALASGKIADAQLAELHARQLQHQIDLLDRRLGQLLVRSPIDGIVVSGDLHRSLGSPTETGQPLLEVAPLDQMLVEVAIPETDIMYVTAGAKSHVRFSALPTKLLSGQIDSLDPAAEIRDHENVFVGRWAMQNPDDQLRPGMRGYATVYGPRRPLAWKPLRQLTETLFRSIGW
>NZ_CP042914.1|WP_148080010.1|19576_20452_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MPIIQARRLTLLGLLFAAVLGSATSARGQDSVPEFDGFIEPLYDIQLAAGEIGVIQSLEVEVGDAVQAGQTIARLDDQLQQTAVHVAETAAAMHGALDAAQVEYELHRHRTEQIRQLSKEGLTRPDELRRAEADLKMAASRWLAAKEEIAMRHEELEKAKQMLRRRSVTAPMSGVIAQIFRKAGEYVSPTDPDIVRLISDDALVAAVNVPARLAVRVQRGDRVQVVTTVPPQSLTATILTVAPVIDGQSGTIQLRALVQSEGRVCRPGDRCTMRFATRPTQQAQRLPRTVQ
>NZ_CP042914.1|WP_162275942.1|20529_22269_-|TolC-family-protein
MAVLAQPLLPAAPSPTEPVLMRPAPQTSPRRLPRPQPAAAPLPIPARQHSPAPRRLPAPQSLLEPQPIAGPQQVPASRPLSDAAPDRAYWWTAPVAKPLLPQGRWVQFDLGTVVADALLQSPRILGVEQEVKIAVEGIVSQDAAFDSRLLLESTYGRTSDPVGNSLVTGGPSRLREKDWSSEVGFQRTTRQGGRWEVTQQLGLLDSNSLFFIPRNQGNTRLGISLSQPLLAGGGRLYNERLIIDARLDAEVARQDSVLEIQNTLAELMLTYWRLYLHRCRYVQQADLLERALKLERIIEGRHLLDTGQAERLRVREQVELRRTELVRARTDFQNEQTRLALLVGSQGLSSERVDELIPRSRPVCKRQVIDVRQAVVQGLQHRPEVAIAAADLENAGLELAVTRNQLLPQLNALVETYVLGLNGNQDVGGSLADQFTEGEPGFSAGLQFEMPVGRRAARAKHRAAHAEYQQQLQAVREAMLTTRSEIEIAVREVNVALELITHRQNTLAAAVAEESYVLRRWELLGGGGNNIGLVVEDLLDAQQSRTTAEEKLVESEVDYLSSLIRLQLAMGTLLLSDQP
>NZ_CP042914.1|WP_068136276.1|22556_24146_-|protein-kinase
MSELSTAREIDRITRGFEQAWQIDRGAPLIDYWTSQASPALRSQVRSQLQELDAQFRAQQAQDVSTFDIDAMLAAQWEAEQGESGGVVATGSQDVADAAASRGGALTQPADVRQRLLACPTFNGLSAEALAALAADLHPIEFAPQQTLIQSGQPARGLILITQGQIEVLTHTSEGPKVLERCGSGSVVGEMSLLSGGPCTATVQAVTPIVALHLSAGDYHQLCQSHPELEIAISQLVSDRLGGRKIDALYGKQLGDYRVLECIGRGGMGVVYRAQRTSGAEGHSEHGLAGESPDGELAVKMLRHRFLYDQDAVEHFQREGDLLAGVRHPNLVNIEASFLAFRTRFLVMERCQGYDLSRQLAMRGPLPEAQATALFGQLAAGLLHLHEHQLLHLDLKPANLMLCHDGTVKIADFGLCRLLDDQPASVIRGTPAYMAPEQLTGDAVDCTADWYACGCVMFELLTGRRCFPARDFMEVILRKSAFDPQNAWTERPASAALSDLLAQALDPDPRKRTLNLQHLATWAAPVENW
>NZ_CP042914.1|WP_068135989.1|24428_26885_+|diguanylate-cyclase
MIKVLFQSLRLAFALVCVGVGLILVGQWLGVVPDSRLIELDGRKRQSEAIAVNTATMIRGQSWPALEASLTAIVERDPSLVSVGIRTKRGYLRLQTSQHGDNWKLAKSGDSVTADWPVGLDTMRVPITVNQQDWGQVEMCYQALSGPGLASLLNHPLMRLVGFFCFAGMGAYTFLAARIFGLFDRTQVVPDRVRQALDTLAEGLLVLNEKGEIRVANKAFCETTKMDEQQLLDLRASKLPWVGGQQRPHSEYPWARALAELKPQSEELLRFQLADGTQRILSTNSAPIISPDGSNRGTLATFRDVTNVEKQRVEMERMLTVLQSSRDEIRLKNKELEVLATQDSLTGCLNRRAFFERLAHYWNAAEKNRWPLTCIMIDNDFFKNVNDTYGHHAGDELLRAVSKMLREMHDQKDLVCRYGGEEFCVILPGRDARQGERQAEQIRTRIEAIRLPEFPDLRTTASLGVSDLSHQPADPQDLINQADRCLYVAKRQGRNRVIVYLPQFSAMDIDESKVSRTAEVEAEETVSVPFQAVMALVSALAFRDAETAEHSRRVADLAVTAAQGLLDQRQTYLLEIAALLHDIGKIGVPDNVLLKPGKLTPEEWQLMSKHDRIGVEIVAGTFNCETLSEIIRTHHAFFGGRGKDSSLPTGQEIPIGARLLTVCDSYDAIVSDRPYRKGRSHQEAVDELRRCSGSQFDPEIVEHFIAAIEHKQQAGETTRLSVPKHTALQLGLQIERLAEALDERDADSLHALASRVAQVARHSGVDSIADAASRLEHDAASDDSDWMHLLATTVELLDLCRSTQNVFLAGQSEPLLVE

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Crispr_ID: NZ_CP042914_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_2

406176-406317

Orphan

Consensus_repeat	Method
GGAGGCGGAGCCTCCGGTGCAGTGCGTACCCAGGCGGAGCCTGGGCACGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_2

>merge|NZ_CP042914|2|406176-406317|CRISPRCasFinder
GGAGGCGGAGCCTCCGGTGCAGTGCGTACCCAGGCGGAGCCTGGGCACGAGCCCTCGTTACTAGGCTCTGCCTGCCGGTGGCGTGAGACGAGGAGGCGGAGCCTCCGTTGCAGTGCGTACCCAGGCGGAGCCTGGGCACGAG

>NZ_CP042914|2|2|406176-406317|CRISPRCasFinder
GGAGGCGGAGCCTCCGGTGCAGTGCGTACCCAGGCGGAGCCTGGGCACGAG	CCCTCGTTACTAGGCTCTGCCTGCCGGTGGCGTGAGACGA
GGAGGCGGAGCCTCCGTTGCAGTGCGTACCCAGGCGGAGCCTGGGCACGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068141684.1\|405291_405873_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376692
NZ_CP042914.1\|WP_068141698.1\|391173_392469_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP042914.1\|WP_084427924.1\|393441_394125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226441
NZ_CP042914.1\|WP_068141689.1\|398038_399175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237541
NZ_CP042914.1\|WP_162276019.1\|399367_400906_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP042914.1\|WP_068141688.1\|401197_404368_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_068141693.1\|395530_397003_-\|RimK-family-protein	unknown	unknown	gnl\|CDD\|223267
NZ_CP042914.1\|WP_068141681.1\|408537_409704_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP042914.1\|WP_084427908.1\|404736_405288_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP042914.1\|WP_068134392.1\|419999_420458_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_162276018.1\|406327_408562_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|100084
NZ_CP042914.1\|WP_068134393.1\|420562_421018_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381108
NZ_CP042914.1\|WP_068141678.1\|412243_413062_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP042914.1\|WP_068130672.1\|417066_418515_+\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP042914.1\|WP_068141691.1\|396999_397791_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379241
NZ_CP042914.1\|WP_068141676.1\|414335_416840_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP042914.1\|WP_068141694.1\|394142_395381_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|367817
NZ_CP042914.1\|WP_068141677.1\|413254_414142_-\|response-regulator	unknown	unknown	gnl\|CDD\|379279
NZ_CP042914.1\|WP_068141679.1\|409935_412134_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP042914.1\|WP_068134612.1\|418817_419678_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068141684.1\|405291_405873_+\|hypothetical-protein	gnl\|CDD\|376692	pfam01970, TctA, Tripartite tricarboxylate transporter TctA family. This family, formerly known as DUF112, is a family of bacterial and archaeal tripartite tricarboxylate transporters of the extracytoplasmic solute binding receptor-dependent transporter group of families, distinct from the ABC and TRAP-T families. TctA is part of the tripartite TctABC system which, as characterized in S. typhimurium, is a secondary carrier that depends for activity on the extracytoplasmic tricarboxylate-binding receptor TctC as well as two integral membrane proteins, TctA and TctB. complete three-component systems are found only in bacteria. TctA is a large transmembrane protein with up to 12 predicted membrane spanning regions in bacteria and up to 11 such in archaea, with the N-terminal within the cytoplasm. TctA is thought to be a permease, and in most other bacteria functions without TctB and TctC molecules.	0.000336029
NZ_CP042914.1\|WP_068141698.1\|391173_392469_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP042914.1\|WP_084427924.1\|393441_394125_-\|hypothetical-protein	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	2.98095e-24
NZ_CP042914.1\|WP_068141689.1\|398038_399175_-\|hypothetical-protein	gnl\|CDD\|237541	PRK13881, PRK13881, conjugal transfer protein TrbI; Provisional.	0.00411935
NZ_CP042914.1\|WP_162276019.1\|399367_400906_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.13864e-09
NZ_CP042914.1\|WP_068141688.1\|401197_404368_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.85066e-103
NZ_CP042914.1\|WP_068141693.1\|395530_397003_-\|RimK-family-protein	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	1.84101e-64
NZ_CP042914.1\|WP_068141681.1\|408537_409704_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP042914.1\|WP_084427908.1\|404736_405288_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.37427e-24
NZ_CP042914.1\|WP_162276018.1\|406327_408562_-\|PDZ-domain-containing-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	4.58255e-38
NZ_CP042914.1\|WP_068134393.1\|420562_421018_+\|response-regulator-transcription-factor	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.43292e-35
NZ_CP042914.1\|WP_068141678.1\|412243_413062_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.29486e-28
NZ_CP042914.1\|WP_068130672.1\|417066_418515_+\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.35881e-176
NZ_CP042914.1\|WP_068141691.1\|396999_397791_-\|hypothetical-protein	gnl\|CDD\|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	0.000213404
NZ_CP042914.1\|WP_068141676.1\|414335_416840_+\|hypothetical-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	6.19104e-68
NZ_CP042914.1\|WP_068141694.1\|394142_395381_-\|glutamate--cysteine-ligase	gnl\|CDD\|367817	pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2). Also known as gamma-glutamylcysteine synthetase and gamma-ECS (EC:6.3.2.2). This enzyme catalyzes the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologs. In plants, there are separate cytosolic and chloroplast forms of the enzyme.	2.95762e-22
NZ_CP042914.1\|WP_068141677.1\|413254_414142_-\|response-regulator	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	3.07048e-20
NZ_CP042914.1\|WP_068141679.1\|409935_412134_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP042914.1\|WP_068134612.1\|418817_419678_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.1573e-60

>NZ_CP042914.1|WP_068141684.1|405291_405873_+|hypothetical-protein
MIELEKIACSNCGAPLEVPDSVDFVTCNHCTTQLSIRRTESVSYTEKLEQVTADQAQLRERLVDLERQNRLATLARNWERHKKQYEIHKDGKTSMPSEVGGIVGMIMGAVIGIFIAIAAPGPMKLFGLLFFAVGVIAGLRSQSLAKQYNRDYRNYRRSRKEILAGKHDSDFNERLKSVPTPREYLEQLEEDVR
>NZ_CP042914.1|WP_084427908.1|404736_405288_+|sigma-70-family-RNA-polymerase-sigma-factor
MWLTGVQKMDADSWSRLVNTFGPIVYRWCRASGVSEADAADVVQEVFTAVARAVPQFQRDKPQGSFRAWLATITRNKVRDYFRRGRDRQAAVGGTEPLLQMQQLPDDLDSTITSENILSPLAHRILRQVRAEFEPHTWQAFWLTAVEERAAADVAQTLEISVASVYQAKSRVLRRLRQRMEEF
>NZ_CP042914.1|WP_068141688.1|401197_404368_-|protein-kinase
MMTITTCPSADRLRAYSLGQLPAADSDDLFEHLRDCVTCQAEIETIGDAEDSLITSLRAGDGDSAWDREPNCQQAVAKALGALSLANADAADADFLPASFGEYDIVRPLGRGGMGSVYLAQHTKLGRQVAVKVLAGHRLADRRMRERFDAEMRAVGRLSHPNIVTAHDAREVEGTAVLVTEFIDGLDLGQLSQRSGPLPIADACEIVRQVAVALEYTHQQGFVHRDVKPSNVMLSRDGEVKLLDLGLARIQFEQAGQGAEITGTGQAMGTADYVAPEQVTDSRSVDIRADIYSLGCTLFKLLTGHAPFADREHVTPFAKMTAHVSTPPPRLSERLQDAPSPLAKLVDAMLNKDPAERPQTPREVADALSKFTVGCDLNALIQVAQTQAPQPADPPVSTTAANSTLAPQPWFRRRVPVWTLIATALGGIVFGAMLGVLIKIKYPDGTTTQIEVPEGSQITMESTPGSDPLSAIPGLPADTNIPAVVAPHSIAPRSPVEMAGPPSIAPDPSAEAIFDGSSPLTFAIVLSKDDLAEEDLQAATQRLQAGQRETPWGVWTPVGEDVNVVPSPEQNGQRYALVSNKESERIEWNALIEGIAATSEVGSAVQKKTLELTFKESLAKQFHRLTGGNMGRKLGIVVDGELVSAPIVRSAISSRAAITGSFSEAEIRRLHGAIRNSILPKYDLHAVWQLPQSERDRDAPGPARYIGFMNGQYIVSLGNNKATPPANFYVQTHLVPNQLVFESPVKDGPRSYAIVQRSAEGQTEIVMAPGDLALTRPADLSAEQRKELQRLTRICSLPPTAEDTKRLDAEQPQIYPSLRVFNEFNPGYPLTPKAAARTPVLRWNVHPPQPAGDSKLVQTKNNLKRIGLGFHNFHDVFKKFPGSRNILEGGRSPRQGKTNPPFSWRVAILPFVEQNKLYEQYRFDEPWDSEHNSKLLDKMPDVYRSPFAPADRPSSHTHYLGFATEKGVLGTEYGTRLRDILDGTSNTVLLVESQSSVPWTKPQDVGDDLEIQFVDGQPLVTLMADGAVRTFDPSKQSDRENFRKAITRNGIEVIKW
>NZ_CP042914.1|WP_162276019.1|399367_400906_+|tetratricopeptide-repeat-protein
MSDTEPDFRACLHCLGRPPRGGRILIVLALLFASLFGSANVLAQVAGEQTPMEPAAAASDPMLAMMYARLERDPNHSDSWRLVGKLEAKQGNTQGAMNALMRALQLDPENAATHFDLGQLLLSGGDAANADVHFRQCVAIAPQSDYAQQLYQQQLVLPPAGLSDGLQPPAAAVSNDVAHALAQSELGGDEASQLDAVGYEIQTFDGADDLDRRLNELRSDADPAGRRWRVFLEMGALYNSNVSLTPISRDLVDNEAESFQGFLNPELEWKALQHGAWRAGPLARGYFTVNESSQSEYDLASFQPGAFIERDLQVGSSDWIARLDHVYSLDLLEGHRLGDRHSLTASVIMIRPDLDVIYTYFTSQFSQFDDDGPDAASTSLDGNAFSGGISRFFQTENAWLPTFSLGIDLESADTEGSDYRYRAINGHGDVTCQLSERWSFVTTVGVGHRDYYDFTGPVSRNELTWRVHGKLRWKWSERFSFAAVVGHDRFASDNEDFDAERTEGGIITTLTY
>NZ_CP042914.1|WP_068141689.1|398038_399175_-|hypothetical-protein
MNRKLFFSVLIGALPCSLALTTASAQSLDGLGSGASQAAAAAQADRVQSQVQQRIQAQTQARLQSQVQARLQSQVQAQVQAQVQARIQAEARRAATVAQRAAAAAAQRAQATADQARNGVQVNLNADVAAQSRVRAPGSNARVGTQAHLEVGTDVRLPAGVSSADVAIYDNIFGQFNPLIASRPNAPEPSSPAQPSPAASPSEPTAEQPPAEQTANQPAAQPAAHNASGLVLSSDLDLSTRIRVATRQRRAEISQLRDQAIERGSTELLVRADQLEQRLDAFAAAQSELQAQLHSNVNANVNAAANARARAVAAGQAQAGEAAGQAGNAASQVRGQTQINGQAQVTGQAGGNFGVQPAAQTATRANAAANGTVSGSQR
>NZ_CP042914.1|WP_068141691.1|396999_397791_-|hypothetical-protein
MRHDLELDIQSQPTDSSCGPTCLAAVYQYWQDPVDLSQLIVEVGQLGSGGTLAVQLACHGLGRGYEAVINTYNLQLFDPTWFGPRGASDATVLADKLTQQLQQKRGRSDIDQHRLQVSTECYLRFLALGGQLQMRPLDEQLIVQSLTQGIPLLCGLSATYLYQECRERSHAVDNQGLSSTRDDVAGDPAGHFVVLHGYDRHSGHVFIADPLHPNPIAPTNKYAAPLSQVAASIHLGIVTYDANLLSLTPPPEQRDSFAGTGLS
>NZ_CP042914.1|WP_068141693.1|395530_397003_-|RimK-family-protein
MKIVLVAESSDGWLGGFEGVQTIDPSEYLANPDWNIRPRTRVYNLCRSYDYQSMGYYVSLLAEARGQRPIPDVMTIQDLRDKTAVGLVPQALDELIQKSFQSLTSNEFVLSVYFGRNLAKKHDRLATALYGLFQSPLLRFKFSRRSKWRLRNVTAIALNDVPAAHRDFVAAAAAKHFASRAASPPKRATMRYDMAILHNPAEAELSPSDDVALRRMVKAAAAVGIEAELITHQEAGRLLEFDALFVRETTAVNHHTYTLARRAKAAGMVVIDDPVSILRCTNKVYLAELMNRAKVPTPQTTVVHRHNAETIAEHMTYPCVLKKPDSAFSQGVVKANTADEMLQRLFELFDDSELVIAQEYMRTDFDWRIGILDQRPLFACKYHMARGHWQIAKHSDDGNKPKFGKCETFPVETAPRKAVAMALKAANLIGDGLYGVDVKESDGRFYIIEVNDNPNLDSGVEDAVLREELYRRIMESFIRRIETSKSFQRE
>NZ_CP042914.1|WP_068141694.1|394142_395381_-|glutamate--cysteine-ligase
MPQPPHPLFSVFGVELEYMLVDRDSLDVRPLADKVLTSLAGQLTSDVECGPVTWSNELARHVIEIKTTAPANDLRLLPQRFRTAIADLQSTLDPLHLCLLPTAAHPWMQPAREAELWPHECSEIYQAYDRIFDCRTHSWSNVQSVHLNLPFAGDEEFARLHAATRLVLPLLPALAASSPIIDGAASGFLDTRMHLYAGHCQAVPSLIGDVIPEAIFDQQTYQREILDTIARDIRPHDPDHVLQVEFCNARGAIARFDRGSIELRVMDVQEYPGADIAICAAAAAVTRALCMGRWTDLETQQSVSTPALRRLLDKTTQHAEHAIIDDAKLLGQFGIRQTPMTASQLWSTLLPKLRHDNAVLDGLYPTLQVILREGTLATRIQRATGKNFSREQLAAVYRQLSECLTEWKPFQP
>NZ_CP042914.1|WP_084427924.1|393441_394125_-|hypothetical-protein
MLITCEHGGNDVPDDLRDGFATVDAARHLNSHRGYDPGSLLIAQWIAQAFAAPLEFSTVSRLVVDLNRSVDSLELFSKFIRNRELAIRHKILQTYYYPYRERVSSLVAAQSSERLLLHLSIHTFTPRYRGQIRRFDLGVLFDPTRSPECVFGERLVEQLRAQGFRTLANQPYEGIADGLTTALRAKFARERYVGIELEVNNRFAKLSAASQEQWCKRIIAAVKAVSL
>NZ_CP042914.1|WP_068141698.1|391173_392469_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSNVLDVTVPTVGESISEVQIGQWLKQEGEWVEKDEDLVEIETEKASVQIPAPAAGYLRSIRKQEEEFATVGEVIAAIEPADAPADGGSNEPASAPPAANSPADGSASEDAPQAGDARVMPAAQRMLDDLGLQADQITATGPGGRLLKEDVVAHVQRGSGSPPAAPTPPPAPAAPAPAAPAPARQPAVGTSLVTSGSGHRGEEVKPLSMIRRTIANRLVQAQQTAALLTTFNEINMQPVMELRKKYRDAFADKHGVKLGFMSFFAKAAVEALRRFPAVNSEVRGNNIVYRQYYDIGIAIGGGKGLVVPVLRNVEDMSFAVIERSIAEFAELAGANQLQPNDLEGGTFTISNGGIYGSLLSTPIVNPPQSGILGLHSIQERPVAERGQVVIRPMMYIALTYDHRVVDGREAVTFLKTIKDVLEDPARLFLEV
>NZ_CP042914.1|WP_162276018.1|406327_408562_-|PDZ-domain-containing-protein
MALWCEFLTLWIGLSDALSFEQLTPLLAAPEALLGGGVLLGDTAEPSLLSRIGSQFYIWGSVAAGLGLVIFVHELGHFLAAKLFGVKVEKFYVGFDVPLSIGPIKFPRTLGKFRYGETEYGIGIIPLGGYVKMLGQDDDPRNMEKENQRIRSGNPDEDEDDEPAAASRAELDPRSYPAKSVGQRMVIISAGVVMNVITGMLFAALAYGALGVEYTPAVIGATSPGDPAYLADIEPGGRVLAVDGGEPDPQMHFSRMTLKILTHGIADPDSPVQLKLEYPDGVREVAVQAEIDPWNPQRRIIGISSPMLAKLGDDPRALEDTPAAAAFSAEDAGADIIAVDGEQLEVNPVLGVTLNDRVANRMVTHADKPITLTLRRQDEAKTVTKVTIEPRKMKTLGFALGVGPVNALVQDGPAAKAGVQVGDRISAIEGIDTLSAMQLPSQIRDLEGAVKLTLQRDGTDEPLEVEIEPTSDDSPLPPYSVVTGKIAVKTLGLAYLPEAVLSDTSIDALKPGDTLSSVTVQWPGDKRPESLDENMLKPFVEKLEEGWDASEQRMLVSLIRLAQQLPDGTKLRVIAERGPKKEIIDTSVTVTEGDTFYPERGILYAPLRKTHQADSVGEALALGFREGKWKMQEVFQFLRLLVSGKVSRNQVGGPLKIADMAASQAEQGWAPLLLFLTMLSMNLAILNFLPIPALDGGHMLFLIAEAVMGRPVDEQLQMKLTMGGVLALLSLMLFVFANDIMTWR
>NZ_CP042914.1|WP_068141681.1|408537_409704_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MRNVAVLGATGSIGTATLDVLANLPAQQWRVWGLSGHAKLSQLADSVAKLTPAPELIVTSSAKAAAELDADRWPSSSRVRVGAEALVELAADPAVDIVVAAIVGRAGLESTLAAVGSGKRVALANKETLVVAGPVVKQQQVASGAELLPVDSEHSAIFQCLQASQTPAQRIILTSSGGPFRTWTADQMREASVEEALAHPTWQMGPKISVDSATMMNKALEIIEACWLFDVPAESIEVMIHPQSVIHSMVEFIDGSVIAQLSPPDMRLPIQYALTYPERSVCPAPRLDCGQRMDWTLEPADRERFPALALGFEVAAAGGTAGAVVNAANEAAVGLFLDRKIRFTDIVPACRRALEQHQHERHPTLQRLIELDQWARAEVQRWHCGANF
>NZ_CP042914.1|WP_068141679.1|409935_412134_+|ATP-dependent-zinc-metalloprotease-FtsH
MSDQDKRKNPSGDGESRGGSVLLILLAIVGAVILCAYLIGNSSQKRLRYPDLVRLLEVTRYAEYGSNDLIPVTPDSAMADSAAADSATGDQAAGGDAADNVASIAAAPEIEAAGTIIVPSDNNPNAFVEWSRPQNIRVSEKGITGKAMFRQLGPSGDSDSEATEKTFSTQWTVRNEEQEQRMTALLDASNVVWDQHIPSTFWEDHGLMLLMMLILLGFGLMMLRRISGVGSPMSFSRSRGKLYAMDETSITFSDVAGIDEAVEEVREVVDFLKNAEKYQKLGGRIPKGVLLVGPPGTGKTLLARAIAGEAGTPFFSLSGSDFVEMYVGVGAARVRDMFQQAANRAPCIVFIDELDALGKSRSGSVVGGHDEREQTLNALLVEMDGFESDTNVIIVAATNRPETLDAALLRPGRFDRHVLVDRPDVGGREEILKVHVKNVKLDEKLDLHKIASITPGFVGADLANLVNEAALLAARVGKPAVGMQEFNEAVERVTAGLEKKNHVMNEDEKVRVAYHEAGHALVADALPNTDPVHKVSIIPRGMGALGYVMQRPGGDRYLSTKSELDSKLRVLVAGTLVEEMIFEDISTGASNDLERATEIARAMVMDYGMSRLGRVNYRQKNDSAFLGGGEAGHTNLHSEETAREIDGEVRRIIDEAISQTREILTARREALEAITQRLLEVEAIDGEELSKLIEAHSSGPLVVPGTASKKPRAKISRPGKGVEIAPAGDGQL
>NZ_CP042914.1|WP_068141678.1|412243_413062_+|sugar-phosphate-isomerase/epimerase
MMKLSISQLTTLRWSTEEDIAAYRRHGFSALGLWRPKLDELGIEGTAELLAENGMSVSSLSWAGGFTGSDGRGHEDAIEDAIDAVRAAEVLGAETLIVLAGGANNHIHGHAMRLLQQGLQAIFEEARGTDVAVALEPIHPGCGAEWSFVGDIRSTLEVIEALPRADVGLVLDAYHLAMNVNSPRDLDWLEAVVPFLRLVQLGDARQTPLGEQNRCLLGEGRVPLEEIVNILSAAGYDGYYEIELLGEDVEPLPYDEVLQHTRQYFEQKLACD
>NZ_CP042914.1|WP_068141677.1|413254_414142_-|response-regulator
MPKILIVDDNPADQEIAARILCQDNEYQIEFIDSPAEAPSRIAADRPDVVLTDLYPANQQGLQLVSRLHAECPELPVILMTDRGDEETAVEALHCGASSYVPKRLLERYLARTVRRLIDVSRDQRSRVRLLGSMKQNRATFFLKNDLEMIPTLINYFQEGMSHMGLGDESDRLRVSVALEEAISNAIHHGNLEVDSHLREHDESRYYACIRERQSQSPYREREVEIKVSMSETEAVFAIRDEGPGFDISALPDPTIEDNLENASGRGILLMRAFMDDVFYNDIGNLVTMTKRRGE
>NZ_CP042914.1|WP_068141676.1|414335_416840_+|hypothetical-protein
MILLQHLPASGGTLISRCLASMQSVCLLSEIHPRGVAHFNPLRQAATWHGLIAEADVAELAADDIQAFGEVIAGLARRAADRGQRLVVRDWAHRDWLGRPFVATPPMRSAWDAILSAAGPQRFAAPTVPRWVTVRNPLDQFIHSKRMDALRDSWDDAWMWRGLRSFAEAVQSLPRFRYEDFLAAPAATLAAMCELADLPYDDDWQHRWRDYHNITGPPAGRQATVIRPVPREPMLPDQWDSLRDNEDLLATLDLLGYTVPEPLCRHPRAEATDVSGATGSSGATEDSGATSGKDWDQQVVHWRRAHAHRPDDVAAALRLADALRWTGQVHDAAEVLLDLARGEPPLTEDAQLQLLPLLCDVLQQSERKFEAIEFRRWLAALAPQHCDNLFQLSVLLAGLGEVDESLEYCRRLLQLDHRHRGAAANFLLYINYSDKYTSAEIANQHFRLGMRFSDRPQPLPPRSRRSGEKLRIGYLASDFYTHPVGKIMLPILQAHDRQRFHVAVYHDGRQSDAITRATLATVDQFTSFHGCSDESVFQRLRDDGLDVLIDLGGYTGGGNRLHVLARRVAPVQVSFLGYPNTSAVPAIDYHLTDRFADPPGLTEHLYGEQLVWLEHAILAWRPYGCAAKITVESRGGPLLGLFNNVAKISPSALAAYAAILRRVPDARLILKYGDRYGVRSLRDRYRREFAAQGVLPHRLEFRTEAEPLEQHLRTMMSVDLALDAFPYQGTMTSLECLAVGTPIVSCCGDYYAHRATSAMMMRMGLHELVAEDAEEYVEIAVQLLEDLEWLRQLRAGVRERFYHSPLTDPVGLTRELEAKLTGWVATPGAVIESP
>NZ_CP042914.1|WP_068130672.1|417066_418515_+|IS1380-family-transposase
MAQRKRKRPVLKRLRRQAVDFDFDGGTLTTDGGLLLLREVDRRLDLIRRLDQAIPDPRDPLHTVHPQAELLTSRIFAIAAGYEDGNDHDALRHDPAFQVAAGRVPAEHNYDGDHSPLASPSTHSRLENRIDTKTILRLNELLVDLFLESYEQPPEEIILDYDATDDTIHGNQEQRHFNGFYDGYCFLPLYVFCDDHLLVSHLRPSKVGAAHHARPITKLLIQKIRSRWPDVKIIIRGDSGFAIERLMRWCDKNDVGYVFGLQHNNVLDKQIACEMTQAQIRHGLYGGTQSVFKWFRYRTQKSWDCSRWVVGKAEYSSQGTNPRFVVTNLPSEEGIVDPTYRRVTIDGKRVRQLQDAGTLCSVAINPEEFYRTRYCPRGEMENRIKETQLGLFADRTSCSRFVANQFRLMLSSFAYVLLDGVRRLGLSDTKAARLRVDTIRLRLLKIAARVRVTSRRVVFHMASHCPSEALYEHVMQRLCRSD
>NZ_CP042914.1|WP_068134612.1|418817_419678_+|glycosyltransferase-family-2-protein
MESEPSAAMPPFVIAGESAAEDVKLQWTDAYVSRCEALLGEAICRRMGIFRLPAEFCLSVIVPVFNEASTIAAVVERLEGTGLPLEILLVNDGSSDGSGEVLDRLAGREGVRVIHHDENRGKGAAIRTGLQAATGDCVIIQDADLEYDPEDFRLLLQPLVAGEADVVYGTRYGHSDRHISPWWHQAANGLVTGLANLATGLKLNDVETCYKLAGRETWQSITPRLRENRFGFEIESTAYFARQRLRFAQRPIRYHQRWYDEGKKIGWKDGVRALWCIFLYGLLRRG
>NZ_CP042914.1|WP_068134392.1|419999_420458_+|hypothetical-protein
MAVTTAVATITVNPAFLQEIKDSNPDLWRTLQEIHDSFQSVEPRAAVASRLVRLLDDLRDHLALQFALEEAYGFIEVPAQAAMAEAENARRQHCSLYLEISELCERAEELQYRGLAADQLALLVEETRLFDARLDAHERLERRLIERAYGGR
>NZ_CP042914.1|WP_068134393.1|420562_421018_+|response-regulator-transcription-factor
MFIESTTNAPMEILLVEDGLLDARITIHALRRSGLRHRLTLVRTAREATDFLGRQGVFARAPQPDLLLLDLTLPDGDGISILQTMRKLQAGSLVSTPVVVLTASDDEQTRARCTAIGVDDFIGKPVDEDKFLAVVRGHEQLMKFSIPEVVA

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Crispr_ID: NZ_CP042914_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_3

760871-760933

Orphan

Consensus_repeat	Method
GGCCGGGGGCCCATGCTACGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_3

>merge|NZ_CP042914|3|760871-760933|CRISPRCasFinder
GGCCGGGGGCCCATGCTACGGGGCGGATGCTGCTTACACGGGCCGGGGACCCATGCTACTAAC

>NZ_CP042914|3|3|760871-760933|CRISPRCasFinder
GGCCGGGGGCCCATGCTACGGGG	CGGATGCTGCTTACACG
GGCCGGGGACCCATGCTACTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_168215749.1\|747694_748867_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|377700
NZ_CP042914.1\|WP_068137919.1\|753844_755029_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349932
NZ_CP042914.1\|WP_068137937.1\|763443_765441_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042914.1\|WP_162275968.1\|762615_763371_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP042914.1\|WP_068137911.1\|750209_751370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068137943.1\|766014_767976_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293764
NZ_CP042914.1\|WP_068137928.1\|761059_761431_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141304.1\|772310_773591_-\|TCR/Tet-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340946
NZ_CP042914.1\|WP_068137948.1\|769246_769687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068137922.1\|755028_755277_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224171
NZ_CP042914.1\|WP_068137952.1\|769884_771216_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273080
NZ_CP042914.1\|WP_068137903.1\|745243_747559_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236315
NZ_CP042914.1\|WP_157609853.1\|765685_765850_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068137945.1\|768292_769153_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|223859
NZ_CP042914.1\|WP_068137917.1\|753336_753741_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP042914.1\|WP_068137926.1\|755583_756660_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP042914.1\|WP_068137908.1\|749079_750213_-\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NZ_CP042914.1\|WP_148080656.1\|757588_760435_+\|general-secretion-pathway-protein-GspD	unknown	unknown	gnl\|CDD\|224367
NZ_CP042914.1\|WP_068137914.1\|752111_753191_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|223890
NZ_CP042914.1\|WP_162275967.1\|761440_762658_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|235392

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_168215749.1\|747694_748867_-\|prepilin-peptidase	gnl\|CDD\|377700	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain. This family is found at the N-terminus of the pre-pilin peptidases (pfam01478). It's function has not been specifically determined; however some of the family have been characterized as bifunctional, and this domain may contain the N-methylation activity (EC:2.1.1.-). It consists of an intracellular region between a pair of transmembrane. This region contains an invariant proline and two almost fully conserved disulphide bridges - hence the name DiS-P-DiS. The cysteines have been shown to be essential to the overall function of the enzyme in, but their role was incorrectly ascribed.	1.20857e-27
NZ_CP042914.1\|WP_068137919.1\|753844_755029_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349932	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides. Peptidase M20 family, PeptT (tripeptide aminopeptidase; tripeptidase)-like subfamily. This group includes bacterial tripeptidases as well as predicted tripeptidases. Peptidase T acts only on tripeptide substrates, and is thus called a tripeptidase. It catalyzes the release of N-terminal amino acids with hydrophobic side chains from tripeptides with high specificity; dipeptides, tetrapeptides or tripeptides with the N-terminus blocked are not cleaved. Tripeptidases are known to function at the final stage of proteolysis in lactococcal bacteria and release amino acids from tripeptides produced during the digestion of milk proteins such as casein.	9.53545e-68
NZ_CP042914.1\|WP_068137937.1\|763443_765441_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.19335e-144
NZ_CP042914.1\|WP_148080656.1\|757588_760435_+\|general-secretion-pathway-protein-GspD	gnl\|CDD\|224367	COG1450, PulD, Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion].	9.1434e-26
NZ_CP042914.1\|WP_068137943.1\|766014_767976_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293764	cd16145, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP042914.1\|WP_068137952.1\|769884_771216_+\|histidine--tRNA-ligase	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	2.07289e-148
NZ_CP042914.1\|WP_068137922.1\|755028_755277_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	4.65323e-08
NZ_CP042914.1\|WP_068137903.1\|745243_747559_+\|AMP-binding-protein	gnl\|CDD\|236315	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated.	0
NZ_CP042914.1\|WP_068141304.1\|772310_773591_-\|TCR/Tet-family-MFS-transporter	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.52624e-131
NZ_CP042914.1\|WP_068137945.1\|768292_769153_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|223859	COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism].	8.9014e-49
NZ_CP042914.1\|WP_068137917.1\|753336_753741_+\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	1.43373e-28
NZ_CP042914.1\|WP_068137926.1\|755583_756660_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.19078e-42
NZ_CP042914.1\|WP_068137908.1\|749079_750213_-\|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	6.91674e-134
NZ_CP042914.1\|WP_162275968.1\|762615_763371_+\|diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	8.06015e-31
NZ_CP042914.1\|WP_068137914.1\|752111_753191_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	3.47788e-147
NZ_CP042914.1\|WP_162275967.1\|761440_762658_+\|GTP-binding-protein	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	3.06895e-65

>NZ_CP042914.1|WP_148080656.1|757588_760435_+|general-secretion-pathway-protein-GspD
MTLAVDSAAKRRGLPGVTGPVPQATGFPVVQAGAVMPAGGSATASAGDIRRADYSSQATGPAAATPAQATGPAVLTAPPAAQPVNDQEGLRLYQQGVEALSAGRSEEARQLFVQAWQYEKTLDVETRRQLQAKLQLMQQPAAPPMGPNGELSALAQVDQETLRNRQRLYRQVTAELGVAYNDRINKPIESLGRINKLRATVVDSDVDESAKKALLAMVDRAIGEQQKYVEENRADIELGIRNDQIRLDLENERKMRLETDDMIAEKVEMFDQLMQERRFAEALVVAKQVQALAPGSTIGTQMMLSSRTQVRRLNAQDVIDRNEGAFVDYLLDAQDLNMVSPDQSMAFPDADAWRDLTGMRAGLNRGNDSLSAAEQEIKRLLETKVDVKFRKQPLGEVLKTLEMVTGVPLFIDEKALATARVDSSTPVTLDLTSQISLKNALNLILGQFDLTYAIGNDVLQITTNEVKRGQLQVRYYKVADLVTPIPNFATSYEDGLAGALKAAYQMNTASNTVQYAPVSAFGLAGEPSPMAVNQNPNMLAQYGNPMNAMSPMMPGASAPMRGAAGGGSLADFTQIMQLIETTIAPDTWEAMGGPSTMAPYAQNLSLVVSTTSDVHDQILDLLANLRRLQNLQVTIEVRFISLSDSFFEQIGVDFDVAFDDNVTDLPADDSGNSVAVGLSGPGRSFTTDLDLRFENNNFNVAPIFGGVDAGALSTFGFAILSDIEAFFFVQAAQGDNRTNVMQAPKVTLFDGQSASIQDVSQRPFVTSISPVVGDFAVAQQPIIVVLNEGTELNVQAVVSDDKRFVRLTLVPFFSQIGDVDTFTFTGSSTSSSSSETVDPDTGEPIESDDSEVVTQGSTVQLPTFAFTSVNTTVSVPDGGTILLGGIKRLREGRGERGLPILSKLPYINRLFRNTAIGRDASSLMLMVTPRIIIQEEEEIAQTGFDPNN
>NZ_CP042914.1|WP_068137926.1|755583_756660_+|Gfo/Idh/MocA-family-oxidoreductase
MTPIRIAGICFEHFHMGDLLAMADAHPQVELVGICDEQPQRMQEAIAKFGFTDQQVFNDYAQCLQTTRPDVVVLCPAAADHGVWTERVMEFGADVIIEKPMAASLAEADRMIAAAERAQRRLMINWPLAWYDTHRTTYRLIREGRIGDVIEVHYYDGNRGPLYHAADKRETTLEEIARAKPTSWFYSRAAGGGSALDYLGYGTTLGSWFFGGQKPIEVTATVDQPEGLEVDEHCIAVARYASGLSKFETRWGTFTDPWTHQPQPRCGFVIVGTEGTIGCFDYAPSVTLQTREHPAAVEVPNDPLEPEVRDPIRYFLDRRDKQLPIEGPCSPEISRLGQQIVDTALASAEQKKTLALLP
>NZ_CP042914.1|WP_068137922.1|755028_755277_+|(2Fe-2S)-binding-protein
MKDDDELCLCFHVSKRKVVNYIRLHRPKVASQLSECYGAGTGCGWCRPFLRKLMESSQAENVDLPSPDDYAQQRQTYRDDQK
>NZ_CP042914.1|WP_068137919.1|753844_755029_+|M20/M25/M40-family-metallo-hydrolase
MSATIDTDAALDRFLQLTAIPGPSGKEKAVAAEIVRQLEAAGADSSAIQFDDAHRRTRMSGEVGNLIVHLPGTVEGPTTLLTAHMDTVPVCVGSQPTVDGEYVYSAADGTGLGADNRAGCAALLTAACELLSGNQPYPPLVLCWFVQEEIGLEGSRNMNAQLIGPHHRAINFDGGTVEKLTIGAIGGERMTIDVQGIASHAGVAPEQGASAIVMASEAIASLHRDGWLGYVRRPQGGEGRSNIGVFQGGDATNVVTPHVHLRAEARSHDPEVRTAIVSAIRDAFESAAAEVQNADGQGGRITFSSHVDYEAFCLDEQGPSVSAAQAAVSAVGREPLLNISNGGLDANWMFRHGIQAVTLGCGQRNVHTADERLCIPDYLDACRIATAVASGQTP
>NZ_CP042914.1|WP_068137917.1|753336_753741_+|four-helix-bundle-protein
MQNGAVKGRHGEDLEERLLDFAARAGKVVDALPSTRLGRHIASQLVRSGTSPAPNYSEACAGESIKDFIHKLGIALKELRESRSWIKLILKADLLPEHRMSGLLDEVNQLCNIIGKSIVTAKVNQARPTQPRET
>NZ_CP042914.1|WP_068137914.1|752111_753191_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MIHSLPLADAPPATDQREHLLDWTPAQLTTWLSEHGQRSFRGKQIWQWIYRQRAVDFVEMTDLPESLRRSLAERFVIYRSSVVKEETSPDGTEKLLVRLPDGGEIECVLLRDGSRRSICVSSQVGCAMGCVFCASGLDGVDRNLTRGEILEQMLRLQGRLPVDERLSHIVMMGMGEPLANLNNVLPALDVARSPDGLGISPRRITISTVGLPVAIDRLSRHAVPYNLAVSLHAPNNELRSRLVPVNRKVGLQPVMDAAGRYFESSGRRLTFEYVLLGGVNDSVQCASQLAKLMRGRPVLLNVIPYNPVAGLPYQTPSAGQLRTFRETLESAGVNVRFRQRKGSEINAACGQLRRNRNAE
>NZ_CP042914.1|WP_068137911.1|750209_751370_-|hypothetical-protein
MFLSLFFMPRVSHRDDLSPDYPPSPRMDVLRYSLPVGRWGETQIRVGYSLPIAFACILAGGWLWRTRPGNADLPVLAGILAASLIGGALFQALVRIGTCRVLGGNSRDVTLRAFGSWGSVTAAVGPRLILALAVPLLTLGMATALAAMPPHGHGWAGISLLPPELTGQLTATSVLVACVWVLTLQAAAQTLPLPGCHGREALTATVDLMVARQPQLRRTAAIRLALGITAIGWTTAGAIALWVQPGATPAIWPWLTLVGVACWVSRSSSIDPPTPYRRAGSHARSSDSASAGTSSADKTSPAKRRPATADRVSPLKSWQHWNTRRRLRAVRRREVEEAADDQQLDGILMRVHQNGLDSLSAADKAVLKRVSNRLRDRPHRRDENAT
>NZ_CP042914.1|WP_068137908.1|749079_750213_-|(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTIQRNPTRTVAIGTIQIGGGHPIAVQSMTATKTQNVAATAAQANALHAAGAGVVRVAVDSVKDAEALAELRQHTEANLAVDLQENFRLAELVAPHVNKIRYNPGHLYHHQKDRPWQDKVRFIIEQAQRHDCAVRIGVNCGSVDPAKKEKYDAEDSITPMLESALEHCRFVDSLDFDRYVVSLKDSDPDKVIEVNQRFAAERPDVPLHLGVTEAGMPPDGIIKTRVAFEQLIGKGIGDTVRVSLTVPNDRKPEEIAAGQQIIDDIAAGRVRSVVRLNRDELNIISCPSCSRVENEAFVELAADVKELTRYAQKHAITIAVMGCRVNGPGETDDADLGLWCGPKVVNLKRGEQTIGAFPYDEILPRLKAELDQIIATR
>NZ_CP042914.1|WP_168215749.1|747694_748867_-|prepilin-peptidase
MTAVASLYVLLSAWILSRQSFLDFSDLLIPRVVDLVVLAWLFWVSSAIGSFLNVVAYRLPLGRGVGGFSSCPFCANKIATRDNIPVFGWLALQGRCRRCRLPIAPRYPIVELAVGLSLTLVGIMELYLAGINLPYQPGSGYSFGALHMPQVWTAAFAIGVCHMLAVACSWAVGLIRVDGVRLPRPLLVWCFVLVALPMLAWPPLQVVSWQVTVEPTWRANGFLSALLRVITGTAAAAVLARAMALSMFPSADIKLDPLGKDTARLLDLMAMLALPGIVVGWQGLLSVTILACLIAINLQRFLPNRDGFARLAIALPAALSLQLAAWRWLDALPYWPSTHAAPWVILLSAFAVATLSLWLRPQPVPPEREGGVGVRSEETGRQGDKESGRE
>NZ_CP042914.1|WP_068137903.1|745243_747559_+|AMP-binding-protein
MIVLLFAIGNVGWTILGALAVACVGLVVLAVVSPRRFVRFIVRPILEMLYRKQVVGGENLPRDGGAVLICNHVSWLDGILLLWLLPRNARFIVDGGNFDGRVARYLASAFDTILMTANPKSIARALKTGREGLLQGDQIAIFPEGTITRSGQLQAFRPGVTKLLKGNDVPIVPMWLEGMWGSVFSFSKGKFFWKLPSLPRRSLALHIGKPLPHDTPLEKMRSEVQRLGAEAMIAARQQMPVLPQRIIRTWKRRGGRLKAADSSGAEVGGRQMLMRTIILRRLITREVLDSRDSEPTVGILLPPSVAAVATNVALAFDRRTSANLNYTVSSEVLNQCIDAAGIKHVLTSAKFMEKMDFDLNTNLVLLEELKDKVSLLDKLVGVAVAYLLPSPIVDRMLGLQKISCDDLLTVIFTSGSTGTPKGVMLTHANISHNVEAIDKAVRLSTEDVVLGVLPFFHSFGYAVTLWAVQTLGPAGIYHFNPLDARQVGKLAEKYGATVLLGTPTFLRGYLRRIEPKQFAKMDVVVAGAEKMPADLFEAFEKKFGVRPVEGYGTTELSPLVSVNIPPTRSYAKYQPDRSEGSVGRPLPGISAKVISPDDGVELAAGQDGMLLVTGPNVMKGYMGREDLTAEAVQDGWYVTGDIANVDKDGFLHITGRLSRFSKIGGEMVPHIRIEEELDRLLGEGQDPDEDQLRVCVTAVPDEKKGERLIVLHLPTDKDPDTLRQGLRDAGLPNLFVPSRDSFIEVAEIPLLGTGKLDLKGARDAAAEAVGE
>NZ_CP042914.1|WP_068137928.1|761059_761431_+|hypothetical-protein
MIVFQCEECGTQLQALDENAGKKARCQCGAVMPVPPLSSPSPAAFDPAPYQPSDPLPTLDEYPPVAPSGSSGPSVGSMMWGFCLMAGGVLWFVASLANGRTSASAIVLFIIGLFRVIGAFNKE
>NZ_CP042914.1|WP_162275967.1|761440_762658_+|GTP-binding-protein
MHPCEPAFAALVCELTGVGRGGVATVAVWGQNALWQRYLQPFFRPARSGALPRPGDILYGTWHAAGREQAAGESVVVTAIDSQHIQVHCHGGRAAVESIMADIGSTGAGRCEWPQWLAASGCCPLEIEARQVLATTDTRRTAAIALDQLRGALRRAAESWLQTLQSDAAQLPAVQRAVADVLRWTRLGKHLGRPWQIVLAGAPNVGKSSLLNALLGYRRAITFDQPGTTRDVVSADTVLDGWSVSLADTAGLRDAGDSIENQGVQRARASIDEADLVLWVHDAADPAKAIPDPAGRTDCLIVDNKIDLVPDFSAAANRPYEAVAVSATSGQGMAELMQRIVQTLVPELPPAGQAIAITDRQAECLNRAVRADTAASACAALEQLLAGRSEDAWLPPPPTSPCETS
>NZ_CP042914.1|WP_162275968.1|762615_763371_+|diacylglyceryl-transferase
MAAAPANQSLRDVMIVRPLYAATMLLAIVAGVVILRLRQRSLGLTTEQRWMLGLGAFCGGMIGAKLPFLIVDGWQQGWSASLWLADGKTILAGIVGAYFGVEFAKWTGRIDIKTGDSFAVPAAVAVGIGRIGCYLGGCCYGAATTLPWGQVFPGSGDLQPRHPTQLYEAGFHLTCALLLWGLDRGGWLRHQHMKLYLLCYLGYRFVTEFIRPEPQVLAGLTLYQLATIPLALLFGVLWWRDSKPAPIRLPE
>NZ_CP042914.1|WP_068137937.1|763443_765441_+|ABC-transporter-ATP-binding-protein
MQDFRRVLRLVAKRRWTLAGCLGTSLFVAMLWGLNIGALYPMVEIVFKGDGVPGYVEQELVNSRERIAECEQEIAALNERLEDKPAIEQRNRLEVSRDLAIARRKAYEQTVASLVRFQPYAQYLPETAFGTLGLMISLLIVGTLLKLVALGVNMMLVQDLAMRAANDVRSLFFRKALRLDLDEFGETGSAGLTSRLTNDIGHLNGGVTVLLGRLVREPLKMIVCFSGAAWVCPRLLLLVMVVTPLMVLVMHALSRSIRRASRRVMDEMTQLYGTLNDAFSGIRVIKAYNTQAFERARFERSVQAYYGRSMKMALYNTLARSVSELLGLGMVCMAILAGGYLVINRQTELLGLHMSDKPLDPGAMLMFFGFLIGASDPARKLSDVWSSLQRGIAAATRVYEVIDRPVRVTEPVRPQSTARPHQKIVFSNVSFRYPSGPPVLNGIDLEVPHGQTLAVVGPNGSGKSTLISLLCRFDDPQAGEVRLDDVCLTKMSLRNLRRRIGLVTQRTVLFDDTILNNIRYGMPRVSREEVIEAAKRAYADDFIREKTEHGYDTLLGQSGVRLSGGQMQRLALARAFLRNPDILILDEATSQIDMESEALIHNALRQFLVGRTGIMITHRPSTLALADKIAVLEAGQLTDLGDHNALLLRNSFYGSLCGSEAAEAA
>NZ_CP042914.1|WP_157609853.1|765685_765850_+|hypothetical-protein
MVDPTPQEIRERSRAIRQRWSERTRKRRRVLTRDPNAWSVPMIPVDDIAAALTP
>NZ_CP042914.1|WP_068137943.1|766014_767976_+|sulfatase-like-hydrolase/transferase
MQIRPATVWSCPLLLAAATLFVWGGLFVPAVTAADKANAKAAPPNIVYIMADELGYYELSCMGNPHIQTPHIDRMAKQGVRFTQALAGSSVCAPTRGCLMTGKHSGHTSVRSNGGGTPLRAGEETIASMLKPAGYATGGFGKWGCGGRGSTGVPEEHGFDVFLGYYDQVHAHSYYPPYIVRNSEEVPLAGNKGGSDGDTYSHYVIVDAAHDFIREHRDQPFFCYMPITPPHGIFDIPDSDPAWQIYKDKDWPEQAKRYAAMVSMVDRQVGETLELLRSLELDDNTIVFFCGDNGGADYFSSKEYPRGFHGANVHPETGVEFRGKKGNLYEGGLRIPMIVRWPGHIAAGRVSDLLWYFPDVMPTVAELAAVKVPSDLDGMSIVPELLGAETAGRAQPQHDFLYWELGQQIAVRQGDWKAIQPGKGKPWELYDLATDVSETKDLAKQQPQRLAAMQQLAAAAHEPVEEGTFHNREIHEKDRLAKYGGRRPAPRKRGKPLKIDIPAAGLVPTDQLKVAAFSSQNASNGKLASNAIDGDANTVWHSRFTPAPVPAPHSLVIDLGATYEVSALWYVARQDGGWNGTVADVQVSVGDDVKDWGDAKPVKVTLEKTRQPQAIKLPATRGRYVRIEALSEVNGGPWASAAEIAVEGSKGNE
>NZ_CP042914.1|WP_068137945.1|768292_769153_-|formyltetrahydrofolate-deformylase
MEVVITALGPDNSGLADPIIHYLTGQGARIAEIQMYDHDEEQLFAMLCRAVFDPQQTGYAAIVDAMRQIGEYTKLAIRVWSPAAREGLPRLAVCGTYVPHTPRAVLQAVRDEQIRAEVPVMISNRKKLAGLAAEFDVPFRCIGDAEGKADDAAMVDVLDEFDIDYVVLARYMRVLPASTCWQFAGGRIINLHHGLLPGFPGFRPYHDAYAVRMLTYGATCHFIIPELDAGNQIINQRTFSVDPGTPLKSIIAQGEAENEPICLAEGVRRVVDQEVQLHFHRVIARK
>NZ_CP042914.1|WP_068137948.1|769246_769687_+|hypothetical-protein
MTTALPIKPRRSQVADVANLCEYCTAKCCRYFALPIDEPDCRKDFDYIRWYLLHDRASVFVDEGDWYLLVHTTCKHLQDDHRCGIYETRPQICRDYTTDGCEYEDDWVYEKYFETPEQIAEYCDARFGPEPGQGVRSRKPTGLPMV
>NZ_CP042914.1|WP_068137952.1|769884_771216_+|histidine--tRNA-ligase
MITPRTLKGFRDYLPEVMIPRESAMQTARTVFRRYGFCPIDTPALEHLDVLTGKGSDETDRQLYRFVDNGGRDVGMRFDLTVPLARFVAQHIGKLGTPFKRYHLAPVWRGENTQAGRYREFMQCDFDCVGTQSVASDIETLLIIHDLMTSLGFERFKIHINNRQVLTGLLERLDLVEQTLPVLRSLDKLPKIGVEKTAAEMCSAAGVTPDQAEQVLKLAACEGTPEEILAQLPAVIGDSETAVAGIERLQQLFAGAAAAGVPAERLKLDVSIARGLDYYTGVIFETFLDDLPKIGSVCSGGRYDNLVSTYSKQSLPGVGASLGLDRLLAAMEQLKILPAVRTTAPVFIAYFDGDRLDAYLRLAATVRAAGIGAELYPEPKRLGQQLKYADSRGFRIALIAGGTELAEGRCQVKDLQAKSAEDVAYTPEQPEQLIQAIKRMLAS
>NZ_CP042914.1|WP_068141304.1|772310_773591_-|TCR/Tet-family-MFS-transporter
MTRLGESEPPSPLTKPRRTAAVTFILLTIFIDVLGIGLVIPVLPELVKQMVGGKAYTAGRYLGVIMASYSLMQFMLAPLVGALSDRFGRRPILLASMFGFGVNFLIQGFAPTIEWLFLGRLIAGVMGASFTTANAYIADVSNADTRARNFGFVGMMFGLGFIVGPALGGFLGAFSLRLPFFVAAALALINGLYGYFILPESLSPEHRGPLRLSKANPLGSIGFLRSYPFVAALVVPFVLASLAQRGLENVWVLHTGFRYGWSALTNGMTLGLVGLMAALVQGGLVRPVIHRFGPRRVAVFATLVSATAFLGYALAESGWMVPPIIIFGSLGGLAGPAIQSMVAESVEAGDQGKVQGALTSLVSLTNIIAPVLFASGLFSYFTSGAAGFIFAGAPFLLGSGLLFAAAAALASVFAKFEVPATDADAS

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Crispr_ID: NZ_CP042914_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_4

791659-791754

Orphan

Consensus_repeat	Method
TTCCCACGCTCTGGCGAGCGTAGCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_4

>merge|NZ_CP042914|4|791659-791754|CRISPRCasFinder
TTCCCACGCTCTGGCGAGCGTAGCTACGACTGCTGTAGCTACCATCGCCAGACGGTGGGACAGCGGCTTTCCCACGCTCTGGCGAGCGTAGCTACG

>NZ_CP042914|4|4|791659-791754|CRISPRCasFinder
TTCCCACGCTCTGGCGAGCGTAGCTACG	ACTGCTGTAGCTACCATCGCCAGACGGTGGGACAGCGGCT
TTCCCACGCTCTGGCGAGCGTAGCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068141342.1\|805837_806599_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238738
NZ_CP042914.1\|WP_068141323.1\|788013_788457_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227303
NZ_CP042914.1\|WP_068141319.1\|785910_786459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080657.1\|791802_792771_-\|squalene--hopene-cyclase	unknown	unknown	gnl\|CDD\|238362
NZ_CP042914.1\|WP_148080062.1\|804712_805819_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238738
NZ_CP042914.1\|WP_068141314.1\|781029_781809_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271154
NZ_CP042914.1\|WP_068141316.1\|781856_782396_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|226912
NZ_CP042914.1\|WP_148080061.1\|793782_794790_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP042914.1\|WP_068141318.1\|782395_783493_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP042914.1\|WP_148080059.1\|786470_787922_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_084427809.1\|783514_785338_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|274186
NZ_CP042914.1\|WP_068141324.1\|788802_791622_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP042914.1\|WP_068141313.1\|780385_780928_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227132
NZ_CP042914.1\|WP_068141328.1\|792919_793576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141333.1\|794924_798185_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP042914.1\|WP_068141338.1\|802468_803380_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP042914.1\|WP_068141336.1\|800393_802472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131281
NZ_CP042914.1\|WP_068141340.1\|803379_804426_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP042914.1\|WP_148080058.1\|779978_780386_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141335.1\|798204_800397_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227713

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068141342.1\|805837_806599_-\|VWA-domain-containing-protein	gnl\|CDD\|238738	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.	3.9601e-18
NZ_CP042914.1\|WP_068141323.1\|788013_788457_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	6.6733e-11
NZ_CP042914.1\|WP_148080657.1\|791802_792771_-\|squalene--hopene-cyclase	gnl\|CDD\|238362	cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system.	1.4256e-05
NZ_CP042914.1\|WP_148080062.1\|804712_805819_-\|hypothetical-protein	gnl\|CDD\|238738	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.	7.92897e-07
NZ_CP042914.1\|WP_068141314.1\|781029_781809_-\|hypothetical-protein	gnl\|CDD\|271154	cd14488, CBM6-CBM35-CBM36_like_2, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily. Carbohydrate binding module family 6 (CBM6, family 6 CBM), also known as cellulose binding domain family VI (CBD VI), and related CBMs (CBM35 and CBM36). These are non-catalytic carbohydrate binding domains found in a range of enzymes that display activities against a diverse range of carbohydrate targets, including mannan, xylan, beta-glucans, cellulose, agarose, and arabinans. These domains facilitate the strong binding of the appended catalytic modules to their dedicated, insoluble substrates. Many of these CBMs are associated with glycoside hydrolase (GH) domains. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. CBM36s are calcium-dependent xylan binding domains. CBM35s display conserved specificity through extensive sequence similarity, but divergent function through their appended catalytic modules.	0.00916822
NZ_CP042914.1\|WP_068141316.1\|781856_782396_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|226912	COG4537, ComGC, Competence protein ComGC [Intracellular trafficking and secretion].	3.23856e-05
NZ_CP042914.1\|WP_148080061.1\|793782_794790_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000136461
NZ_CP042914.1\|WP_068141318.1\|782395_783493_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	4.95005e-90
NZ_CP042914.1\|WP_068141313.1\|780385_780928_-\|hypothetical-protein	gnl\|CDD\|227132	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion].	0.00243154
NZ_CP042914.1\|WP_068141324.1\|788802_791622_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	9.95418e-36
NZ_CP042914.1\|WP_068141335.1\|798204_800397_-\|hypothetical-protein	gnl\|CDD\|227713	COG5426, COG5426, Uncharacterized membrane protein [Function unknown].	0.00213692
NZ_CP042914.1\|WP_068141338.1\|802468_803380_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	7.07713e-36
NZ_CP042914.1\|WP_068141336.1\|800393_802472_-\|hypothetical-protein	gnl\|CDD\|131281	TIGR02226, hypothetical_protein-transmembrane_prediction, N-terminal double-transmembrane domain. This model represents a prokaryotic N-terminal region of about 80 amino acids. The predicted membrane topology by TMHMM puts the N-terminus outside and spans the membrane twice, with a cytosolic region of about 25 amino acids between the two transmembrane regions. Member proteins tend to be between 600 and 1000 amino acids in length. [Hypothetical proteins, Domain].	1.71559e-24
NZ_CP042914.1\|WP_068141340.1\|803379_804426_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	5.53297e-84
NZ_CP042914.1\|WP_084427809.1\|783514_785338_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP042914.1\|WP_068141333.1\|794924_798185_-\|hypothetical-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	6.65057e-06

>NZ_CP042914.1|WP_068141324.1|788802_791622_-|TlpA-family-protein-disulfide-reductase
MLLIVPAALARADEAGMLRLGDQQYATGTISDSPDGRALHWNHPAFTEPFQFPLPSVVSVSYPTTDQPAAAQGQFGLQLVGGGLLYGDLISIDDNTIRLATETFGELALRRQSVQRLFRWRDGEDRLYVGPRDLSEWQAQPADAWNDAGSVLATSHPGASVFGDVRLPPQCSIDVKVGWDDNPNFRLCFGVDADDANALDDFSGFQIEVWGDELVLLREREDTAGVTPIGTIDSVPGYVQLTVLLDQTNHRAMVLGSDGRVAADLDLGGDPDAIAQSGFGFENIRGDSRLEAISVRAGSAEMFDAAEQTDTLVWLDNDESFKGRLQASEDKGRTLVFSEGNETRRVPSEQVARIVLQPLQAVAADDTGDEADADQPPTARLSVVTHRGMRLVGQLKKVEQQKMWLSVEELAEPIAIAIAEIRDFVVLDNHPVETRELKSRVGRLETSDTILQGGFEDGRIDGPASCFVFAPALAQNASPLRRDAVAEMIYRDTTVVTVQNASQHGIVFRGAGMGMRMAGVEGQIVIANGVRRVISPVKKKQKKTDPSKRTLHLRAGDTVECEVLSIDDVGIKVRCKGDIEALVPHAQIRAVELESLSGNPVADERKQRLLTVPRMRRKNPPTHLIVSIDGDYLRGRLQSMNEDTLSIETRLDTQQIPRQYVAQVIWLHEDEILQSDGTAAADDGAEAEEQAAAAGDDTSPPADAVFEGLVQVVRGDGTRLSFVAQQVADGIITGTNEYLGPCSQDIRNVDRLVFGGRIFTQTDNLPFASWRLTHAPDPMVFRDGGSGSPGGGPSGKSSELVGQPAPDFELRLLSGENYRLSDHQGDVIVLDFWASWCGPCMQAMPNVDEMVREFDGQGVQLIAVNLQESEKRIQQALERLKLDTVVAMDETGDIAERYQASAIPQTVVIDRQGQITHLFVGGGARTLEQLRSAITDAIQ
>NZ_CP042914.1|WP_068141323.1|788013_788457_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MSQVLVCREARRRSGFSLVELSVVVIIIGVLAAFGVPRMLKSVERSKASEAFKYCASVRAAQERYQARQGTYATDLTELDMEQVAPKYFTVGTVAAGSTGSMEDSWTLTLTRSGASSGYGAYTVTFTHDGYDAASSTIDADIDPQGT
>NZ_CP042914.1|WP_148080059.1|786470_787922_-|hypothetical-protein
MTSSAIGILFEDGILYGCQASRTLLGRFRHQQVSQPIGQAGLDQAVLELLAQFTGLSTDTPVAAGLPTGETYFATRPTATSAGSVSPRVLLRESLRSAAVRLDRLEIDVLHWQPERRSVASIIAAPSSRIDSIRQAIESAGYSLQQIEPMATALCTAAARVDTKDRGNQTITRVILSRERILAVICKGFTPVHWHEMDLPPGDEASGIVSVVRAAITGASTCGLNEAPERIVLHGRKELRPLIDMQWLHSQLPVELRWLDEPAADAPGMVRALADNLLAGEPGQFDLARIHRAATPLWDLIPWREVVGYAAVAAILFLSLQFRHNDQTAQRTALLATSPVALDSHADVRARQTELQAQAANLSKFLDNRVHWAPHLRTIVNQLPPHTQLTEIRGSAALRNQKKSSRSMPATLVLRGTCSLDDEGNVPASLDRFVEQLRAQPALAEAFPHIELSDVRRTRQQQTGIDGAEFSVVMLASKKAKER
>NZ_CP042914.1|WP_068141319.1|785910_786459_-|hypothetical-protein
MASKPQKNWRSECAALADSLREPFRMRLLVAGGFAALMFFVIGEPSHGKLQRGHRELRQWKQQIATAEQVALLDSRVAELTPRLITGSGTDPVLNHMLTVIRNSAADLVRLDAEAAARLGPYEAVRLQIELTGSFAALDQVLQKINNDSLLLRMDSFVMTADQRDPSQTSLQLTVLMLKERT
>NZ_CP042914.1|WP_084427809.1|783514_785338_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MIPSTSSARPRDRSHSVNSPLTLPQPPASTASGSCPLILRLLDTMDRLDPDKLEQLWDAQSKEDVSLEESVIRAGLADESQIAAAYSQHYLLPLFDPPIDQPPPVDHTVAELLPARLCRDHLIAPLNDDGHTLEVAIFAPESLLLADELKLLTGRKMRALFAPLTVIERLLSVLYEEGNWSEAVNVVGRPNIEEVEEQDEAGDEESQEAEEVVHLDQPPPPGRDGRIIRYVNAIFEQALQTGASDIHIEPYEDSCRVRIRIDGTLTEVTPPPLSLLPSVISRLKVLAKMDIAERRIPQDGAIALRTGERRVDMRVNTCPTVHSEKIVMRVMDKNALPHDLFALGLDDRQYSDLVESIRSPHGLILVTGPTGSGKSTTLYSCLKHLNDAETNICTVEDPVEFKFSGINQVQTRSQVGLTFASSLRSFLRQDPDVIMVGEVRDDETAEICLRAALTGHLVLSTLHTNDALSSVTRLQDMGAQPFLLASTLRLLVAQRLIRKLCIECCQPYRLDDADYARYGIQPGTTLMRSVGCSQCRETGYRGRVAIFEIVRVTNQLSQLIQSGASLDQLQQAAIANGTSLLAQSAMQKVVAGVTSLEEALSITVQTH
>NZ_CP042914.1|WP_068141318.1|782395_783493_-|type-II-secretion-system-F-family-protein
MSLDGWMLQHARVSARRHRRVKLDDKMTFFQQFGSLLASGTPMLQALRLASEQSQSERLEEILDEVAERVSSGSQLHTALNDTAEDLFPPHWVAMVATGEATGKMDQVLCDLNQQIREASEARGKFIGSLIYPLVLMVVAVLVVMIMLWFVVPTFGNMFKEMNATLPGITLFVMDASDLIAKYGIYILGGLLVGGFFARRWLKTESGRRRSTSWMVAIPIVGDLVIQSAMYRFSSNLALLLKSGVPMLETMHSLGNVFRGQPPYRDAILHARNRLAAGRSLAEGLSESGLFTPMMVNAVRVGEQSAQLGPVMSEIAPYYREKTQAFMGRVSKLLEPVIIMAMGAVISVVMLAIYIPMFEMAGKVN
>NZ_CP042914.1|WP_068141316.1|781856_782396_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRNSHSRSYRRQTVDPSAADPTHALASVATSHARRRGLTLVEVLTVMVVLSILLSMSVSPLRQTVEQTHADIAGAGLRSLYNAQRFYWLEHRSYADSIVELRDAGLIDADYLTATEAATAPPSVRYQYEIVSADASGFVARAVRRGSGDWSGNYQIDQTGAMSGAVSNAAATTTLTPGF
>NZ_CP042914.1|WP_068141314.1|781029_781809_-|hypothetical-protein
MHPAPHSRRGFSYLEVQVAAVLLAVGISGLAPLVVIQSRQATRVAERLTSSEPIYLAPVDGDWHRRLGALADVSASAAAPLTPHRRPQLISSRSGYPAFRTHAAAGGYQYWVTYYDPLAYGSQLVWHYTSGTYGSYAQWQFTDVPAGYYEVYTTHSARSYWHPAAPFRIYDDTAVVHSTQINQRLFPNDYSYDGQTWERLGTVRIVSGTLRVRLVDDTSSPGYLAANAIMIRPLEVVSVRSLTPASDTQASCTIRIRTP
>NZ_CP042914.1|WP_068141313.1|780385_780928_-|hypothetical-protein
MINRRTQTPRSRRRGMSLLEVSIASMMSVMVVLGASSFCHTMTRTLADSIAQTRQAMDTRMVVESLRRDLAGALPDQHDGSRNRWTLVGRQLVGSDELWLCYDGDGDGAASWSSPDRVIRYEFADQCLRRIDTQTGSMLLLADRLASVQFQLTGGQISVTCTTAAEAFPAEYHISAPDLP
>NZ_CP042914.1|WP_148080058.1|779978_780386_-|hypothetical-protein
MSRTRPPHVPARPARRRPPRRGFAMLIVMVVLIAMLGMAAVHQRRLSAALRIEEAVVAAEARHRGPLFALAQALEIAESGPPPNNPSIYGLQFVAPGETQRQAYSIRYTRTGSQWTVDVQRIDDASGLLALPTHF
>NZ_CP042914.1|WP_148080657.1|791802_792771_-|squalene--hopene-cyclase
MAQLPGQRYGEVVPRDVREMYERGLKYLAQTQDTGGDWKTSSHQGPGVTGMAVMAFLASGEDPNFGQYAGNIRKGLQAVIRGQDANTGYFGNSMYHHGFATLALAEAYGTVDDREWVGEDMRSLAESLELAVRASLTSQQDNPFGAWRYSPEAQDADTSVSGAVLVSLLAARNAGIEVPDKAIDRAIGYFTSMTSDGGQVGYSGGMGGMGDSLARSSIASLVYSVARRKDLPKYKATVQYLTSNLEQTPRNWPEYTRYYQAQALFQGDVESWEKWNTGLVRQLKTIQQTDGSFKGQLGPAADTSLSLLAMALNFRFLPIYER
>NZ_CP042914.1|WP_068141328.1|792919_793576_-|hypothetical-protein
MFQTAQNEAGCRKRLAAQLGVLLDEAVRDHDLTESQQQQLQLAGRGDVKRYFDQVAIRRDRFNELRYDRQKMNEIFQDIQPLQQRLNQGLFDEQSLFHKVLQQTLTDQQRKSYQREAELRAERRAVAAVRVAMVEFEHMIPLTHEQRERLSALLLKYAPPAKIASGYLKYLMHYRMSQIDESEIDGLFDEAQHEAFKKYAQQGRGYIAFLRQQGLIDE
>NZ_CP042914.1|WP_148080061.1|793782_794790_-|hypothetical-protein
MMLCLAVPAGAQEKIRVVADEAKFEAVTEALRGDRNKAAKAADQRKRVMVERLRPAMNLELAFIRRATKLTDAQRKAIAADAENKLMDLAGQHNNILNGRVVLQVNGAFVQQQGNGQRGDMQATIRQAARDCTDKHLNEQQLAKLKREWEYRDQAEKTALIDDILSQLDSQLRLSQQQYDELQATFESKWQHAVSIRFNSGQVFTVPAVPEELVLPLLTDSQKAVWKLANKSHSYTYFNQSRNFFDEPLWENAEELKAEAEARAAAEAEATAKAVAKGGDAIKAQLEAAAAADAIKRAQQAKAAQEQEAAFELRIEQLEQAAAAVAAEKQEQANQ
>NZ_CP042914.1|WP_068141333.1|794924_798185_-|hypothetical-protein
MSDQPKLTVPKSLENQLDRYKQVVWKIKMIEAVAMAIVGVLLGFLFVFLLDRFFDTPAAIRVLAFLGAVVGCGMVPWFLHRWVWRHRRTEQLARLLSHKMPQLGDQLLGVIELTKNEAEQHRSLALCAAAVKQVAEESNKRDFRAATPPSRYRSWATAALVAAGGAVVLLVLFPAATSNAWARFLAPWKPTPRYTFTHLEPLPEQMVVAHGEPFDLQVQLAPSTQWHPDTASVTIGSQRPLDVEMVKESYSFTLPPLIEDSQLEVRVGDAVHRIDVQPKLRPELRSLMAEVSLPDYLQLPEPLEKDLRSGSVSLVKGSRATVSAAASRPLTEARVNEQPVATEGERFAASPARVDALVNLKLDWQDEFGLAGREPFALSIEAHDDEPPTVICEDLQRTSVILDSELLNFKIKASDDFGVRRVGIHWSSLDAAYVETPTEGSRALAGGSPDASSMEVQGTFSAKSLGIPAQPLQLRIWAEDYLPDRPPVYSAAYTVYVLTPDQHAIWMAEQLNKWHRKALEVRDRERQLFETNKEFRELDADQLDNPETRRQLARQAEAERANGRRLEKLTAAGEQLVRQAARNPEIGVGHLDRWAEMLQVLKDISGNRMPTVAELLKEAANQPKTVSSTPKPSGPAVGKVQATGSGQGSESEEEDTPKTPPAPSIADIESNQQPANEPAESESEPGKKKPSQPSLGLVKTTLIGPGGEPAEPPPPANENVDQAVEEQSDLLAEFEKIADELNQILGNLEGSTLVKRLKAASRHQYLIGGHLTDDLTDTFGREEVPDETETAAKLTELQEQEHQSARTVSLIMDDMQAYFERRRLTQFKMILDDMKEQDVIGSLRQLGTDLVAEQATSVAQCDYWSDAMDRWAEDLVDPASSGSCPGGKSPGSLPPSLVLEVLQVLEAEMNLREETRVAQQAREVVDAEKHEGEAKRLASEQNQLAGRIIEVIEAIEALPEGAQRFAKDLKLLDGVVPVMNDATDILRDGDTGMAAIAAETEVIERLLQSERINPKGGGGGGGSTPGGGGGGTTTDTAIVLMGTGINKNEVREDHGVSQATGESGPALPEEFRAGLDRYFNQLEQVQ
>NZ_CP042914.1|WP_068141335.1|798204_800397_-|hypothetical-protein
MNSTQALTFEWSLWTLLLSVVLVSAAAAFCFTAWRRSGYRRAIGALELLRLTLIVLALLLLNQPEWVQQYRPQEKPTVAVLYDASASMDTVDGQIGESGPPVPRKQAIAALTEPETWQSLEERMNVVIQPFAGSDSEEGSDLAKPLSDVIDEQSSLLGVVLASDGDWNIGAPPVDAAARLRSKGVPVFAVPAGRDSQLPDVELLSFDVPTVGVGGKAVRIPLTIESALPRDYQTTIVLRSSDGETISKDIRILAMGRTSDAIIWKPSSTGDFTLTLEIPKHSSETLAENNQMTAPISIREEKLRVLVIESYPRWEYRYLRNALSRDPGIEVSCLLFHPKLEKTGGGNADYIKDFPAGRDELSQYDVVFLGDVGIEDDQLTDLQCEQLKGLVEHQASGLVFIPGWQGRQFSLLETKLSELYPVVMDALQPDGWGSRTPSHFELTELGRRSLLTKLADTRDDNVEVWEGLPGFQWYAPVTRARAGSEVLAVHKDISNEYGRLPLLATRTYGAGKVLFMGTDGAWRWRKGVEDLYHYRFWGQVVRWMAYQRNMAKGETMRLYYSPEQPQVRQTVTLTANVMENSGEPLSDGDVTARIVGPSGRGQTVQLASQGDQWGAFAGRFSPQEAGKHAVTLACQQTGATLETSLFVQGAALERVGKPARPEVLEEIARVTRGQVIQMNHLDSIKNALRTLPDPPPAVRRVQLWSHPLVAGGMIFLLGVFWIGRKAVGLI
>NZ_CP042914.1|WP_068141336.1|800393_802472_-|hypothetical-protein
MSFLQPWMLLAMPIVALPVIIHLINQRRYQTMPWAAMMFLLAANRMSRGYARLRQWLILAFRMLAIAGLLFVISRPLASGWLGATAGGAADTTLVLLDRSPSMQQIGDGTASSKLDTARQQLVAALSTLQSARLVLIDSGDGQVRELESIDDLAEAPDTAAADNTADLAGMLQEAYDYVKANRVGRADIWIVSDLRESDWNSDSGRWAAIRDAFKELPQTTKINLLAYGDPAPDNLSLRVTDVRRQTRGDQTNLLVSLRIRGGSETVEARKIPLQFEIDGARSEWSVSLSGGNAELKDHPIPIDDKLQRGWGRVSIPADANPADNDAYFVFDDPPPRKTILVADEPQAARPLQLAAEIASDPNVPHRAEQVPRSQLGTVAWEEVSLLLWQGELPSDEERPQVESFVKAGGQVIFFPPRNPSDAQMFGIRWRPWNQAEQAVAVAQWRGDQDLLANTLSGSALPVGQLRISNYAGIEGPFIPLASLDGDRPLLVRAAPPNANQPTASADHDAASDGAADNAAANDDNDTSDDGDSGPLGVYFCTTTPSPLDSSLARDGVVLYVAIQRAVRKGAAALSDTRTLIAGTVQAENWRAVSTTDDAISSEYGIHQGVYRTDEQLVAVNRSVAEDATAMVSDAKLQTLFGGLDFSRVDDTAGNLHSLVQEIWRLFLVLMVVAMIVEAALCLPRRRSVTES
>NZ_CP042914.1|WP_068141338.1|802468_803380_-|DUF58-domain-containing-protein
MFADRQPREFLDTKVLARLAGMPLFARRAMQGNVSGKHASPHRGASVEFAEYRKYVPGDDLRRLDWRAYGRSDRFYIKEFEADTNLRCCVVLDTSGSMDFGSDGSTKIQYARRLAAALGYLAVQQGDAVGLSCVADGIVKSIPPKRNAAHLSLVFDTLEQAQPDGPTQLIPVLHELAETVRQRALIVVISDFFLPPEELRGCFEHLRFRKHDLAAFQLLDPAELDFTFQRPTRFLDMEGGAAIFAEPNTIADRYQSALHDYLTQMQKVVLETGVDYHRVRIDEPYEQSLMRFLVGRTRGRGVR
>NZ_CP042914.1|WP_068141340.1|803379_804426_-|MoxR-family-ATPase
MSEATTAPSGGATPGGEAQLSDNDVQAIDFLREAHTKLKAELGRVIVGQQSVIDQLAICLFARRHALLMGVPGLAKTLLVSKLAETMSLQFSRIQFTPDLMPMDITGTDILQDNAEGRREFHFVKGPVFANIVLADEINRAPPKTQAAMLEAMQEQRVTVVGKTFHLPSPFMVLATQNPVEQEGTYPLPEAQLDRFMSLIELDYPNEAEEIQIAKTTTGGELPELKHLLTGEQIIEHQALVRRVPVPDHIYTYAAQLVRKTRPQGETAPDWLPPLVSWGAGPRAVQNLILGAKSRAALMGSYMVRLEDVQEVATAVLTHRVITTFAAQAEGIAAKDIIRRLVEESNES
>NZ_CP042914.1|WP_148080062.1|804712_805819_-|hypothetical-protein
MLRRTREANSSFGLSFLDVAFCALGGVLLLLLYAVNHQQQQAGTFIQTKEALEADLESGKKLIAGLTAEQKQLANNLDSANRELANIKSDMARKIAEMEAERRGANDAMKAAEVASKAQQNALSAQLADAKRGIAEANQALTDSKQDLQRATENLMRMRTGFAALRAQMSGVIGLKGEMKNVAFLFDTSESLSRIGNDLSAESRQRANVRYAEYKSLLAAWVTSLNFETFTVIEFNHMPREVPGWEGKLVSATQANRTEAVQFIDNLTPQYTTNTRAALAKAFALNGIDTIVLFSDGAPNDRENKSIRNDEEERATEAAQWILEYCQQANPDKRVTINTIAMGDYLDEIYGKFLQDLAKQNNGVFIGR
>NZ_CP042914.1|WP_068141342.1|805837_806599_-|VWA-domain-containing-protein
MRIRGRDVQVFSVSFLDVISCALGGTLLLLLAMEERSQQIVQEAQHKQQQAETERDAAQENVQRLAQLQKALTGLGGNLKHVVYVIDVSGSMAESEDSNAIPEHYLNQFCLKITELPSEDFNVVSFNHEAHVWQPNRMLEHSDRNVERACAHVRTLRAENMTNTYKALQAAYGLPGVDTIILFTDGDPSVNAAGIPLADDDPAASDRYKQELVDFVAAQGDSIILNTVAIGEKVDSSFLSNLAAIGGGANTSL

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Crispr_ID: NZ_CP042914_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_5

1015966-1016037

Orphan

Consensus_repeat	Method
CCCCATTTTACCCTCCCTCCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_5

>merge|NZ_CP042914|5|1015966-1016037|CRISPRCasFinder
CCCCATTTTACCCTCCCTCCGGGCATTGGTATCTACACAAGACGCACCACCCCATTTCACCCTCCCTCCGGG

>NZ_CP042914|5|5|1015966-1016037|CRISPRCasFinder
CCCCATTTTACCCTCCCTCCGGG	CATTGGTATCTACACAAGACGCACCA
CCCCATTTCACCCTCCCTCCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_148080085.1\|984489_991818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284918
NZ_CP042914.1\|WP_068142810.1\|1009942_1010452_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP042914.1\|WP_068142817.1\|1022922_1023741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP042914.1\|WP_068142814.1\|1018709_1020749_-\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|235057
NZ_CP042914.1\|WP_084428329.1\|1010533_1012078_-\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	unknown	unknown	gnl\|CDD\|274395
NZ_CP042914.1\|WP_084428327.1\|982668_983763_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP042914.1\|WP_162276065.1\|1025512_1026715_-\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|334596
NZ_CP042914.1\|WP_068142808.1\|991986_999069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP042914.1\|WP_084428331.1\|1024132_1025341_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP042914.1\|WP_068142813.1\|1016273_1018553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP042914.1\|WP_068142815.1\|1020827_1021544_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP042914.1\|WP_162276066.1\|1027878_1031070_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP042914.1\|WP_068142811.1\|1012152_1014492_-\|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl\|CDD\|349772
NZ_CP042914.1\|WP_068142819.1\|1026961_1027870_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NZ_CP042914.1\|WP_068142856.1\|1008698_1009718_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP042914.1\|WP_068142809.1\|999264_1008702_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236140
NZ_CP042914.1\|WP_068142812.1\|1014780_1015965_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100085
NZ_CP042914.1\|WP_162276064.1\|984064_984493_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NZ_CP042914.1\|WP_068142816.1\|1021615_1022599_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP042914.1\|WP_168215693.1\|1031298_1032369_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_148080085.1\|984489_991818_+\|hypothetical-protein	gnl\|CDD\|284918	pfam07595, Planc_extracel, Planctomycete extracellular. This motif is conserved as the N-terminus of several Rhodopirellula baltica proteins predicted to be extracellular.	1.06018e-05
NZ_CP042914.1\|WP_068142810.1\|1009942_1010452_-\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	5.97192e-23
NZ_CP042914.1\|WP_068142817.1\|1022922_1023741_-\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	9.39813e-07
NZ_CP042914.1\|WP_068142814.1\|1018709_1020749_-\|NAD(+)-synthase	gnl\|CDD\|235057	PRK02628, nadE, NAD synthetase; Reviewed.	0
NZ_CP042914.1\|WP_084428329.1\|1010533_1012078_-\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	gnl\|CDD\|274395	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP. The WbaP (formerly RfbP) protein has been characterized as the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.	4.3527e-133
NZ_CP042914.1\|WP_084428327.1\|982668_983763_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	3.93744e-118
NZ_CP042914.1\|WP_162276065.1\|1025512_1026715_-\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	1.19986e-64
NZ_CP042914.1\|WP_068142808.1\|991986_999069_+\|hypothetical-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	0.0057503
NZ_CP042914.1\|WP_084428331.1\|1024132_1025341_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.10011e-23
NZ_CP042914.1\|WP_068142813.1\|1016273_1018553_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	3.31594e-09
NZ_CP042914.1\|WP_068142815.1\|1020827_1021544_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	6.76368e-101
NZ_CP042914.1\|WP_162276066.1\|1027878_1031070_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.45567e-128
NZ_CP042914.1\|WP_068142811.1\|1012152_1014492_-\|polysaccharide-biosynthesis-tyrosine-autokinase	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	2.38267e-65
NZ_CP042914.1\|WP_068142819.1\|1026961_1027870_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	1.46313e-28
NZ_CP042914.1\|WP_068142856.1\|1008698_1009718_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	3.8137e-112
NZ_CP042914.1\|WP_068142809.1\|999264_1008702_+\|hypothetical-protein	gnl\|CDD\|236140	PRK08026, PRK08026, FliC/FljB family flagellin.	0.000318172
NZ_CP042914.1\|WP_068142812.1\|1014780_1015965_+\|site-2-protease-family-protein	gnl\|CDD\|100085	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.	4.38982e-57
NZ_CP042914.1\|WP_162276064.1\|984064_984493_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	3.29212e-08
NZ_CP042914.1\|WP_068142816.1\|1021615_1022599_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.8423e-31
NZ_CP042914.1\|WP_168215693.1\|1031298_1032369_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	2.54491e-54

>NZ_CP042914.1|WP_068142812.1|1014780_1015965_+|site-2-protease-family-protein
MLNRRFPLGTYFGIGLYVHWTFSLLLLAVAADRWTHGHSWQQVLVMVGIVLTMYLCVTLHEYGHALMARRFGVGTRDITLLPIGGVARLERMPRIPWQELLIAVAGPAVNVVIAMLLMAVVIVLSLTVEGFQERAWRSLAEFDTVGVSAIGFMVLILISNIVLVVFNMIPAFPMDGGRVLRSLLAMFLDYRKATWLASRIGLGCAVLMGFAAWTQLNWVMLLIACFVAWAGMMEARQVTVSESVRGLKVSDAMIVMDESDTIPATDSLHELAQRWRSESRTVLPVTDPAGYLLGIVYLRDLAKAIRGGQHQQLVASITKQDLPTLHPDQRVEAVLTQPPPRRVRQLPVVSYAGHLVGLLDLDSLLDRASLTPAPAMQYEPTAAVEGDDGTLYSA
>NZ_CP042914.1|WP_068142811.1|1012152_1014492_-|polysaccharide-biosynthesis-tyrosine-autokinase
MSHEPTTSPEPVLDLWGVLRRRWIIVFLGLALGISLAVFYAVVAPKIYSSQVEVLVMRKDPGLPMMAQNQQGAPQQEIGDSLLATHMEIIRSPRVIGDAVDNRQLEALESIRQQLDPELARLDHRRAVITYILDNLWVERGGQELAYAPLTFVAEFRHGQAADCATVLTAITESYQDFMAETLQDANSEATGLIQQARDDMSLEIDQLENTYREFRRSTPLLTLGPDSLNKNQIRLAALHSELIRLQLRESELESRAIILKNTAGQESLREFSDLERLGLIDARDVERLALLVTVERGDATTDESFVAQQPQRTTTATTEMDSLLTLKVRLREEQSRLGSEHPRVLELRDTVRDVEQFLEAKNQALQPQQDSPEIRSGTLVKAYAKVIDKDLEDIRKQIEFTQQQIKQDEQESVDLVDDELRDQQIRDELYATKQLQLAVIDRLRQLNVMQSYGGFVTEILRAPEFGELAWPILPLVLAAGLCFGSLLGGGLALLVDLGDRSFRSTADIETATGAPMLGAIGAMKFRRNKQLSRLISPELVVYHRPESPQAEAYRHLRTALMFSPGGKDLRLLQMTSPNPGDGKTLTTVNLAASLGQTGKRVLLIDCDLRRPRVGKLFSLDPDNTAGLADVLTGKTELLDAIYETEVPEVSVMPSGFRPHNPSELLQTNEFFNLLAAVREKFDYVLLDSTPLLAVSESASIGQRVDGVVLALRTANTSRPEAERAVQRLQSVGVEPLGFVVNDIDYLSRQGDEGKYGYGYHYGAGGKAEKYFRPTASAK
>NZ_CP042914.1|WP_084428329.1|1010533_1012078_-|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP
MSGLQSQPRASGRPAASQSRTDAQASTEIWNPSLAADDFSPLPWHRRYAAQVLRTAAPLVCADWCAMTLAFIVSMPVAGWLTGSPINHGGLFLLTGVCLQFIVFCASGLYPGAGVHPAVELRQLTLTWAGLAVAAVAFALFHGSTESPYTLLAAGTFLGSMLCSPIIRTVVRSWASHRQWWGYPVIMIGEGKLADQVDANFRRSGGRGLRLLGRFDHTHRYWQEPHDSRLAWLGNLEDVIRYAKQNGVHWLVIAMPDRMDSNMVTWVQFFRQRFRHVVLIHTRHELPSLWHRPLDCGGLSAVQVEERLLMREQQIFKRALDLILVLGGGLLLLPLIAALAVLVALASGRPIFYRNPRVGQYGRRFGAWKFRTMVPNADQVLSEYLDAHPQAREEFEANHKLKQDPRITRIGGFLRKTSLDELPQIWNVLRGQMSIVGPRPIQVAEIAKYGETYDHYLRVRPGITGMWQISGRNNTTYEERLMHDRFYVRNWSPWLDLYILGRTLKTVLKCEGAY
>NZ_CP042914.1|WP_068142810.1|1009942_1010452_-|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MPAPQQATFRVDVSKEAFVFSAAHFITFAGDICERLHGHNYGVRVTVEGPLDDNRYVVDFIALRDAVLAETGQWDHHVLLPTEHAEIRVHSDDKETTATFRERRWVFPNEDCILLPVINTTAEEMARVLAERVRQRTREQFGETLTWIEVAVDENHGQWGVCRLPWNAS
>NZ_CP042914.1|WP_068142856.1|1008698_1009718_-|flagellar-motor-switch-protein-FliG
MSNELVPMDEKGLRKAAILMMTLPTTAAAAVLAKLPQHQIEAISIKIAQIESVGGDEQEVVMAEFLTSKASAVFASEGGLERAKELIKAALGKDASDLLGNLQQTIEAMPFGFLKKVDPQTLLQFIHEEHPQTIALLMSHCAGTYGAELLAGLQPDKQLEVIRRIAAMGRTSPEAVDELERGLEQRLSTMVSQKQSSVGGAESVAEILNVSERSIERSVMEALNEEDPELSDGIRRLMFVFEDLVKLGDRDIQTLLKNVETSQWAMALKGASQALQDKVMRNMSARAADNLKEEIGYLGSVRVSEVEAVQQKIVDIVRHLEDSGEISRPTGEEEEAYVT
>NZ_CP042914.1|WP_068142809.1|999264_1008702_+|hypothetical-protein
MRQHKLRRRATKHGLRRKLSRVLGGERLEDRRLLATFVEAGTVLNLQLQANENVGIVANANSYSLTITGGTGSWSGTNSANVTGNANNVLTVTATGQSVFDTINITDTAANTSVTFNDSGVNSYTDAFNVTLSNAGAGNVSFAGNSNFDTPDGSLTAQTTAAITVNGGAAVTQVSGTLSLTAGASVTAPGVDDGTADIAAPTISIVAGGAGTIGTSETNRVEVDAATLNATTADNHIWLADTAGGVALGTLDAGIAMILLDVNGPITDGNGPAVNLTAGNGVNLVTNGPTSAIGTVADRIETAIGSLSATTNDGGIYVSDSNGPGMIINTVLAKQGGETPYIGAGNQVVVGSPASNGTHDVAIAVQGPVMLNSVVAPDAVTIQSVTGAILDMNQELTDVLAQSVHLSANGAVGQVTDPIELAVENFSALATDGDIFLSEGIVGTATSIIAAGANKNVVITSTAEALRLGAISAAGNVTVQNSIGALLDAVAPASIIGKTVDLTGATGVGTVGDPLETTAVDLLATVTDLAAPIRIDEADGLNSVAAKTNAGDVTINFTGGPLQFTASTQVLNASGAAVTFENTGGDVKLGVVNSGVSDVSVTASGAISDDTNDAVSDLGGGTVTLQAGTGIGAAGNEIDTDAAALNATTTTGGIFVREANALSLSASTLGTDIDVRTATGNMTLGAVSAPGQVTLHAGGAILDGNGNTNNVSAATLDLLAANGIGSAGDALETSVNSLTANGGAGGGLFLANNKSLTLTSAAATGGDISIAAAGNLTLASAVTATGQNIVLSAIGELIDMNFGADIIADSATLNASKIGDSGNIIETNLAALTAATTAGGIFLNNTGGSLALVATALGQSAPIDISTSGNIVLDTATAQGDAVRLRAGGAITDGNDPPPPAKVNITAKAIDVAAGGGIGTSGNPLEADVDRVIRLDGGAVGVNLSNAGPLLLTEAALQSGGTGTLTFDAESITIANIGDNMATLAAGRSLELRTQTGDIVFLDSADTIKTSGAGTITIQAGLITGSGAVAVLGNLKTAGGDILVTADKHITIGQLDAGTGDVTVRAASGIIIDGNGATINVIGGTTTLVGSAPTAREAELHEEFKIAEAAAANAEAAAKETSAEAFGSGAEIVVAATLQAEAAVNSAITVVDAKQAAYDPLNQQVLDLEIALEVASGVAFGLDIGATAAETAAAVAQVIPLTGDGGAATVASVIIIASKVADAAVLGLSIAKDKIDRQAGDAETELTEAKAELAAARSTLTLATQTRNAFQESFSIADAAAVKAGIIRDASARVRDQAVLARDQANVIGTFTAPLGLQVAGVINVTAGPTDSYLQVVGDTAVDLIQATGSVTLISTGVISDADAGGGADITGLGLRTIADGGIGTAADPLETRVDTLNATNTTGGDIAIANTVGTPAALNITGISNVGGGDVIVSNQGNTAAGQGITVSGPINASGAGAAVTLNSGSPLTVAADVIAPGPVTLTASETAGPGDDLTVNTGVTIESTGASVLLRAGDNVNVASGATVKAATSVTITANFSDDAGDATGAEVVVAGQLVAPSALINVDPTADDDDTFTITPSVATPITVDAEDGSDTLNFVADGLAVTILGNTITAAGRAPVTFNNFEFVNITNVAGDGSVTLLTAPGDADVMILTGTGQGAGTFTLNGGIPISFSGTPSFTFNAGDMNDAITVSPFATSVLPWNVAVNIDGGTGTDRLTYNNVVGLFDDTMVTATGLGSGHIDSPGVTSALNSQLVSFTNIEDITANANPGEDEKLTVNHRDTSADDTTTLLFDPTPGADDLQLAGLFDMVIDTDNYVGLTINGRGGDDTFNVTPGPIPVRIDGGDPVGSTAGDLINFTPAGVFIIEPGPENDEGGFNAVGSERVSWDHIEEVSVTGGGPSVFLGTNGDDDITIIARDSSTHAAADGVQDFTVSLNNGPSILYLDAPVFFVDSLAGDDDVVVREAAPNAAAWNVQLFVAQGTPGLPTGDQGDVFSLETPGTQTVAFTPNPAAFTIPTLPAGVTLSIPSPSDVDTAIVNDVTNTSAISLTPFNLSVPAANFAFTSSPGGADTILYNGLGGGDTLTINGSDVDDTFVVNPSSGGSGSFRSHLSPTFDFTGADAITATGGNGGSDEVIVEGTNSNDVITASAATRMVTVTDSTGTTLNPVILGAGIDIATIEANKGDDLILASPDPGAGAALQINVHGDLPNASDRLVIEDQGIGNTVQHHQGPDLRSGSVIVGALSPVSYEGIEYIDILPLDDDSNSPTFGGTGSDGLGRIVVFHPDPFSQNSSFRNPTELSDLAQHTAKPNISPGGQTNPFGSGFDLPGDVDWYRFIAPKTGTFRFDVLFDTVGPLANGQPGLPGDGLLRVDMFESDGTAIVRLPTETDASMQTIGVEEGQSYLLRVQGQTVESINLYDINVVDVDLLGPQVFDPDGAGPEQAVQITGNPTYNLFDVKPVSQGPTPLVNSITVNIQDLPIRFPGFVYGALDTDVSSAVGHYKVVGDHNGIVPISKVIVRNAPVMQGELATATIEIHFEQPLPDDRFTLTISESVVDPSGNQLDGESNAQEPQGSPGFPSGDTVAGGDFVARFTVDSRAEIGVAAAGTVYVDSNGNNLFDPEATGSDDTNEDIVYKLGFQTDNTFAGNFIAGAGDVADGFDKLGTYGQVAGQFRWMIDTNNNGVPDLVVGQPGQINGRPVAGNFDGNAGNGDEVALKDGTNWVLDANHDFVTETTLAGDMIGLPVVGDFDGDGIDDLGAWADDVFSLDLSGVDGVINGFTDVQFTFGFPGVREIPVAADFNGDGVDDLGLYNPDAAGVAPGEQSDWMILVSQPDALAALDQQFGFQYAGSQFFNAYGAQEKWFFDAANNWHFILPNGEVYDWDNTPGVAQGTLVGVVDPSVHANLDLLVLAVENGGKPVIPITDRIVADPQGVLGNVIDFTPEPFGLDLFASFGDSQALPIVGNFDPPVSPSGGTPDPVQVVGLSGSNAGNEFDVDGNGVVEPHDVLLVVNHLNSHGVGAFAGGLQIEAGGQQWNTGPLPDVDGDGMIDPYDALSVVNYLNRMNRARASQGESAAGLLDSATESETDSPLRAGDELAVLDAGTRKVTGANEADVFSDWTAADLPAEENDPSEDPELDDTLELLANARS
>NZ_CP042914.1|WP_068142808.1|991986_999069_+|hypothetical-protein
MRYRKLRRPVTKNASRRKLSKVLAGERLEDRRLLAVVLPEIGTGSIGSLLTNVGLTAALSSIPSSTLDSTPPDDISVLYHAFPQEANDVKVTGDLLNLFLYINEQNDDIFVQRTLPAFNDDLLEDFNFTLEFIAGVEIPVAHLLGLDFPDVEAIVPNPDALSTFIPSEVQQAFEAADQVLGTTIFPELEIFDTTIIPSLDVGDLIGGVIPGPVDDVLIKVIDILGGGSRGGVQLHLLDGNDTADLSELSGVVQEVHGGIGNDVLMGGGSQDPLDVLGVTAIAPPVNPRIELFGDEGRDKLIVNNRFDVVDYRVHGGAGNDILVVPGSDFNDIIRLVSDADGNLQRIEYLAPSSTGGLAQNEIQTVTLPAGATGTFTLTFDGQTTAPIAHNASTGDVESALEALSSISGVNVGGVPGAWTVEFDGAGLANTDQLNMAANGTGLTLIGGPVTVDPTLVGGSVNYNEIQQVALPAGTTGGQFALQLGAQITALLPANADSSAVRAALAALPGVGSTDNVMVTSPNPSGGPWDIEFTGTLSGSNQPQLTTVNSSLVGFAAGSSVATTTAGVLRVNEVQTVQVNAASGSYTHTFGGFTTSAIPVGASPLAIQNILAALPSIGPGNVSVTGAANNYRIEYVGALGGSNQPFIGTNTAGLPGGATITTSVIQLAVAGNDEVQTVTLDPAANGGSFSLTFNGETTSPISFDHSTTPATPPPASAVRAALGALPSINGIQNLTVTGAAGGPYTVTFVNDLGLSDQPSMSIDDSLIATPQNLVISTTRQGGTPVNDIQTISLPDNTSGGTFSLSVGGVPIPANLPSNATAAQVELVLEASPSINNVTVTGPNGGPWTVEFLLPNPGTPAPIITGNGNNLQLMGTSLNIAETQSGSAAGDQLLVTTTITELDGIEQLQIDLEGGDDRVIFQGVPSMFNDLPIFQQGIFVDGGDGTDVIEMQSLATTPDFQAPIFPDDVAATLQFDGRAIQFADVEGGLEFDAQGKAGTVLVSGTDASNDIRFRSLGGGEATFANDGQVTITLQNFNAPSTVNINAEQGEDTISIFLNGDSQFSQFNVNGDGPDGADALRIEGTANADAFVLTPNATDPKAGSVSVDGLVTIDYSFIDDLSFIGDGAVDSLTVNEPSAGSTDLVLFSPQVGNNGSFQWVGQPGGPETATVYAPVNFQGIETRVFNTGTGVDTFAASSDDLPGVNSSAAVLGGNGVTSISFGDQSTLFVHDTADEDLVSMEIGTAVDDVQITPGVGVAIAVNTALGTDELIYNAGGGNVTWNIADRAVQQPGVGDVTYTSVEALTLANAPAAASALTVLGTVIDEQLVYQPLTATGGRVEHSGPTTPVMTFDNFGGTFTVDGNGGDADVLTTMGTAGNDSMVVDMAARTVSLTDSVGLPRKPVTLAAGTEIAAADGAGGDDSVLVQAAAAATLQVNVIGGGPLASDRLVVQDVGPGDLVLHRESHDLRGGSVQVGLLPPIVYQEIERVDILPLDPISGGTGDDGNGRIVVFHADPFEQNDALVNATEVPDLFQSTVKANIGIAAALNAFDTGLDLPGDEDWYRFRAPKIGTYSFEVLFDRIAALPGGGELAAAVYRADGTLIADSVDFTNGDVVSFSADRLTDYYLRITGSTTDAINIYEVNLVEVDLVGPQVYDPDGAGPLQAIQITSDPTFNLFDLKGSDGQLQGPTPLVHSLTLNLRDILNRVDELPADLLNRAEPNGRAPGDLYPALDQLIAEQLGHFEVRGDNNGIIPIQSVRVVNVAAVVGQIPTATVELTFADPLPDDRFTLTIRDSLVDPAGNAFDGESNASEPNGAPTFPTGNFVSGGDFVARFTVDSRAEIGVAALGSAYIDSNGNSQFDPEATNSDDTNEDIVYKLGFQTDNTFAGNFVAGAGDTADGFDKLAAYGQVAGQFRWLIDTNNNGVPDLVVADPAQVNGRPVAGNFDGNAVNGDEVGLKDDTVWYLDADHDFQVDTTLAGDMIGLPIVGDFDGDGIDDLGAWADDVFSLDLSGVDGVINGFTDVQFTFGFPGVREIPVAADFNGDGVDDLGLYNPDAAGVAPGEQSDWMILLSQPNELVVLDQQFGFQYAGSQFFNAYGAQEKWFFDAANNWHFILPNGEVYGWDNTPGVAQGTLVGVVDSSAHANPDLLVLAVENGGQLVIPITDRIVADPQGVLGNVIDFTPEPFGPDLFASFGDSQALPIVGNFDPPVVPSSGSIDPVQVVGLLGTNTVNGHDVDGNGLVEPHDVLMVVNHLNRHGVGAYAGGLQIEADGQQWNNGPLPDVDGDGMIEPYDVLSVVNLLNRMTREQAAQGESQIASSDATARDAVFASWSSDRLRIPGLDPSDLEEDEDHLTELSDSLGSAL
>NZ_CP042914.1|WP_148080085.1|984489_991818_+|hypothetical-protein
MSMSIQTSRHSSRRRRHAEKRNAKRRLFMEPLEARRLLAIDFAGVTNWLEQGAQPITASSAIADPDNPSSGAVEDFAIDPNDPSHMFAASVNGGIWRTHDGDRPFNGVDDDAANGIDDPDEQPTWVPVSDQLSTLSMGGIAFDPLDASGNTVYAGTGSASSLSSTGGPAIGVLKTTDDGETWSATPLTAGGFQPQVRVVVPTTYDSADNPAVTQVILVGTVGSGLFRSTDAGASYTQVSNSGVGLPAGSVTDIVVDPNDDDVYYVGVVGSGVFRSGDGGASWNSVNNATLSTNATLGSSTAVMLTAHPGGGTTRLYAMISYDDDGAGAPEVPQVFTTTNNGAVWTELAAVTTGFESGNGNLYTGMASDQIIVDPSNENIVYIAKGYGGSPMILRYDPAGAGDWDQIENVPAVGNTRPHVDHRDLQFVTTNGADVLINVNDGGTYFMVDPQNPGEWVSLQGVGATGMGVIEFTNVTWDSRFNVAFGGAQDNGTSVQTGSGNRVWQGFRGADGGDVQFADAGGGDSFRYTGTQNFGLQRHRFDSATNQPIAPVSLVPAGGLAGFSNYFVPQYELNQVNPSRLIAGGSDDGAATLADNPVYELLNADTAANAAAANWVPVPIGAGFTNVNNNGDAAFVVGGRMGGADNEEVLIVGSNDDVFIRSTAGGTLTVTPTPFPGSTVQAIVTDPENWQHMFVADSSRIWETPDAGMTWTEITRNFGTVNNRLQSLSYVPTADDAVLLAGGNLGVSRLVVSDPASLWTRLGTNLPNALVNDLEYHADDDVLLAGTFGRGAWLVDNASLVVDQHPVLTICGDEDQVNQDDVIRLMRNAANPLILDVFLNSVVPVFSAPLAAIMQINVFGNGGNDELIIDTSNGLIDVPEGIRYNGDGACDIEETVDSNGHQHGPGYDRGFDTLTITSDDLSTTFDSEQVGVGQLPGSGQHTITDAAGTQTVWFEELEPVNSIVAAASFAITSIPGLASLLQDDNHVTYEAAQILALPAGRVTIDNFEPIEFSNKTDAVFDLGAGDDFFVANYAGLPTGLQTITVNGDAGDDSIQFDAIADASVTSFVSVSANGGVGDDLLDARSIDVETPFTLSGDEGDDTLIGGRGDDTLNGGEGSDLMAGGDPRAFVAGILIGDNVFNGGAGVDAMAIFGTEQLNVFFDDAIFVTQTSTTTLTRNFNGNLSTETFSGLEEVRIEAFSGDDQVSISIDDALFDNANDPRPDVLRYRVVGGDSQTGDVLRVFDDGLGDTILQRIAQDITAGTFTIAPAHPSVAPIVVPPQIIYEGIEFAEVPGADPLTGATGTDDAGRWIVFKPDPFEPNSTLPNATFLGAGETINVDPTVEGGLLTDRDFYQVTAAETGTLDYRIYFEDLPTLANGRGGLPGNGDLLVTVYDSDGTAIGTGTDLLDGALNVIGLRFTHGAVEDQTYYVRVSGETNAAVNVYNVTVENEAAPVPAIVDLQAASDSGRHDSDDVTNVVTSTFDIILDDDRLDSFLNLDLLPDTSDDNTANAAFDYGVEVFNNEVSIGFAFYTGAGNTWQFTAAAGDLLEGHNNFIEAAVWVRDSALPEQIGRGELGGTLQMTLDTVAPDPPSLLIDPATTDTGVGSQPATLVDHITSETTSGFVGNAEADAIVRMWADGPVISAGVVNASDVYQGLTVALPLDGDEAFPAGYWSHTGTFDLNDPAVGFPLDGLRQIAVNAEDLAGNVSTLTTLDMFIDTQGPQVTNVQITGSPAYDLFDVKPTQGPTPIVNSLSVSIQDLPNRVALFLYDALQAGADGNPAENPGHYQVVGDHNGIIDIDSIVFAPDPVVAGSPASGTVLIHFAQPLPDDRFTLTISDAIVDPAGNALDGDSNAAQPNESPTFPSGDGQTGGDFVARFTVDTRAEIGVFALGSVYIDTNGNNLFDPEAAGSDDTNEDIVYKLGFQTDNTFAGNFVAGAGDVADGFDKLGTYGQVAGQFRWLIDTNNNGVPDLVVGQVPPINGRPAAGDFDGNAVNGDEVALKDGTNWFLDANHDFVVETTLAGDMIGLPIVGDFDGDGIDDLGAWADDVFSLDLSGVDGVINGFTDVQFTFGFPGVREIPVAADFNGDGVDDLGLYNPDAAGVAPGEQSDWMILVSQPDALAALDQQFGFQYAGSQFFNAYGAQEKWFFDAANNWHFILPNGEVYDWDNTPGVAQGTLVGVVDPSVHANLDLLVLAVENGGQPVIPITDRIVPDPQGILGNVIDFTPVPFGPDLFASFGDEQALPVVGNFDPPVVPSSGTVDPVQVVGLNGTNTDNGYDVDGNGLVEPHDVLMVVNHLNRHGVGAYASGLQIEAGGQQWNNGPLPDVDADGMIEPYDVLSVVNLLNRMTRERAAQGETAGAVPAWLDSNKPSIVESRSERQAGGLPDAPPTAAASSRAAANDAVFADWGNNPLWIPGMDLSESEEDEQEDDPLDPDTRLGAVL
>NZ_CP042914.1|WP_162276064.1|984064_984493_+|response-regulator
MTNRVVRTVIVDAQLDAYRALPLGEAESSGLTLLDSGRAALQHSAIEPIEQWLINIHLPDMSGLELFRMLHTRHPKARFVLVGDVYQAEEERQTRTWGAAGYLCKPPQAWWLEPLQAEQRSDDGHPGISKPQSASPHRRQQS
>NZ_CP042914.1|WP_084428327.1|982668_983763_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MSDSAHMRGPAAVSCGDVSRSSSLAGCSGILGRSAWAGGVRRKIARVAPSTSTVLIVGPTGTGKELIARCIHEQSPRRRGPFVPVDCASITGTLCSSQLFGHVKGAFTGADYESLGCFRAAEGGTIFLDEIGELEPSIQAMLLRTLQERIVVPVGNHREIPVDVRVIAATNRVLDEEVQAARFRMDLLYRLRVMTIQTTSLRQRLEDVSVLAEHFLTRLSKDNGIPAKELSVESLAVLLAHDWPGNVRELQNVLECAAIFSDSESIQPSALRIHKSPAAQPEATAGTIPAALQPFSPHQARGPEPAECLETWLTLPEVEAQHIARTLEVAGYNQSAAARMLAIDRHVLARKMKKYGLRKPEGLQ
>NZ_CP042914.1|WP_068142813.1|1016273_1018553_+|hypothetical-protein
MRLTLRTLLALRNKTLAPDDETTLTEKVRESSYAQQLLDLIANVVANAKLSALAPTATGPTDDANVMAEYIDSTLPPEQAAEVDRTCLESPIHLAEAAGSHEVLTLVLGKPADVPAPLRDRIYGLSSYTAETLDSPLPAAAAGGDGQAAQGGPQTAVPPVSLSDSGAFQAASRLQPTQISASNTVHPAAAGSTEPAIAGSRQLNAAEASEIFGDRLRTSRVVPWLVTLALVGVLAFVLKQAFEPLLHPTPTELTQNDPAAVDPAAADPQPAEPGPAEPEPAEPAPAEVVPPAATEPPAADPAAEVEASPPPPVPMPSEPAAVEPTPEPATTDSDVAAGTPPAMTDEPEVRVADASATTDDPGSNAVGTPDRAAAEPSAALARTASSNGLLLGLPGGADAQWVSLPNESPVAADTTLISPPKFRNQVTVTDRYELTLVGPAMAHLAAAGSEAELHVQLGRVLITALAADTQLTVRYGQRVATVDLPEVGTTLAIDVSAFRTPGTDPTIAENRVLVTRALAVVGPVFWQLEGAAAEEIQTGQQWSQIGDGSPEKVTLETLPPWIDGGVESAIDKTARKTLLTLVPIGDSVALPLREATHFRRAEVAALAARTLVMLGHNDVYFGTDGVLNNPDQKSYWEDHVAALKARIDLSPTAAKDLLADARSMDAANADALFRLLWDYSPEQLETGDDAFLVETLDSPQTALRVLAIEALRRVTGTSLFFKPEQESASRRKSDIKKWETKLRRGDIRWQTIPIAGATE
>NZ_CP042914.1|WP_068142814.1|1018709_1020749_-|NAD(+)-synthase
MNDHEFPPYGLFRVAAVSPQVAVGDPRQNVAHMLDALQPLESADLVVLPELALTGYTCGDLFAQEALLAAAEEQLLELTGQTADSKQILVVGLPLRVGTSLMNVAAVLHRGQVIAAIPKQFLPTYNEFYEGRWFRAGDETDPPSVSIGRQDVPFGSDILIRCGTAVVGVEICEDLWTPLPPSSFQAVAGANILLNLSASNEIVGKATWRHDLVVSQSGRCIAGYVYASSGPSESTTDLVFGGHCLIAENGQLLGQSRRVGDGELPWQGATHVMADIDLQRLQHDRRVIGSFDDGRRLLSRPFRFIDTNALAVKRRRPETAKSNAHAERPPLRPVVAQPFVPADPQHRDARCAEIFEIQTAALAKRVSRLPESLPLLIGVSGGLDSTLALLVAVKACDQYGWNRQRIHGITMPGFGTTETTESNADELMTALGITSERIDIRPLCLQAFRSLEHTPLNLAIDQHTTVESLQQQLLQTPADAEDLVFENVQARIRTFLLMSRGFVLGTGDLSEQALGWSTYNGDHMSMYNVNTSIPKTLVRFLVRYAADHYFEGRDGQLLHEIADTPISPELLPPAADGTIRQETEDKVGPYELHDFFLYNVIRNGFTPEKIRFLARHARFSQPYSEQQIDRTLNTFYRRFFANQFKRSCVPDGPKVGSVSLSPRGDWRMPSDADRGPWKE
>NZ_CP042914.1|WP_068142815.1|1020827_1021544_+|SOS-response-associated-peptidase
MCGRFNLRTNPATLVQLFLPQMDVGDVPPLPPRYNIAPTQQILAVTGDDAEHRSLRFFRWGLVPPWADSLSIGARMINARSETVAEKRSFRGPFASRRCLIPASGYYEWQASDNGGKQPIHIHRDDDGLLAMAGLWEENRKASADGAPVFSCTVLTTSANEKTAPVHDRMPVFLEGAGVDAWMDPDASSEQLQDLCRPLADERLECTPVSPKVNRAGYDDPQCIVPIKIATQRNLFDT
>NZ_CP042914.1|WP_068142816.1|1021615_1022599_+|sugar-phosphate-isomerase/epimerase
MGERNEQCGAASGLSRRAFVAAGAAALAAGAASGRAVAEDRATASATTKPRRPNPIAVSTYSYWRYRADSKLTIEQCIDLASETGFDAVEILHVQMQDQSNATLQRIKQRAFRGGMDLCGLSTHQTFVSPDAKVRQENVEHTIKCIELAYALGIPTIRVNTGRWGTSRNFDHLMENKGIEPRLEGYTDDDGFGWVREGLEKCLPTAEKCGVVLGLENHWGLGRTADGVLRVLREVDSPWLKATLDTGNFLENQYAQYQQMAPETVYVQAKTYYGGGTWYSLDIDYDRVAKVLRDVDYRGYISLEFEGQEAHETAIPKSLAMLRKAFA
>NZ_CP042914.1|WP_068142817.1|1022922_1023741_-|hypothetical-protein
MKRFTKMLATSAITLSTVASSVVPAVACDRGGRGGFRGGFRGGFSAPARSYSRPATYSSYSQPQYYQPQYSQPSYPSSSVPPSSFRQPGVAQSVPQQSVPQQSVPQQSVPQQRLAQQPRSAQQPSQQPQQQPQQQQPAASGSTARQNALQMLIGTSAEPTPSSKPSNDTSMPQFQPAPARTATHVGTWKATLPNSASISLNLQNDGSFTWSARNQKGQTSQFQGKFTVNDGALTLIRQDSQQLSGSLTMSGSNAFTFKLNSAKDNGLNFQRS
>NZ_CP042914.1|WP_084428331.1|1024132_1025341_-|trypsin-like-peptidase-domain-containing-protein
MSPKRYPPLSRCLVLMMLFGAIQCLSITNARGDVQTYRRTLKSTTWVLSKNSEGTSSGTGVLIDAEKRLVITNAHVVGDSRNAVIFFPAMKNDSPIVERSHYLQNVRKIGIRGRVLAVDRKRDLALVELDKVPAGAEALPMVEKSVSPGEIVESIGNPGATDALWVYTSGTVRSVYRKQFRTGGGEHDFRVVETQSPINSGDSGGPVVNSQGELVAISQAIAPKARLVSYCVDVSEIRDFLASPWKKAPLPVTEILDNAELKYSKDASGHYKVDLPIDVEDSEEKVTHEVLITKDVEYYERADVRKVWSLAHIQDNAPSQETTIRLLQQSARTKLGGWTVEKTGDNRFVIVYVAKIDATATPAAVKSTMEYVAKLTRSMNKELNPAVETQDASDTLRDWLAD
>NZ_CP042914.1|WP_162276065.1|1025512_1026715_-|Nramp-family-divalent-metal-transporter
MKSKRLGPGLLIAAAFIGPGTVTTACIAGGEFGLSLLWVIVIVTLATILLQEMAARLGVLTGQGLGENLRRQFSSPAVRWAIAALIAIAIGFGNAAYQTGNLIGAALGLEAMLPIGLTTWVLCIAAIASLLLASGSYRMIENGLIGLVALLGLTFLLAAVVSLWHRPIAWSDTLPNIPSGSLVTILALLGTTIVPYNLFLHASAAGHRWSKHRPRGEGIRLARRDTIISLSIGGMITAAILVTAATMQGSPPEKVADMAASLQGALGSSLAYGLFFAGLAAAGLTSAVTAPLAAAYAISGAMGWSTDEKQWSFRAIWITIMAFGTLLAVTLGHQPLQTLLVAQAANALVLPVIVAFLLMACNAKLLGQYRNATWLNVCGGVVLLVVTGLSLWKLYEAAAG
>NZ_CP042914.1|WP_068142819.1|1026961_1027870_+|response-regulator
MSTILLVEDSPTQAMEIRLMLEERGHQVSLVTDGTAAMEALQKSLPEVVVTDLEMPGMSGLELVEAMQAQFPQIPAILITAQGSEALAVQALRRGAAAYVPKNMLGMLLNTTIRDVLGVLRADQSYAQLVDSLTFNRFVFRLPSEPFLIAPLVDLVVQMVSGMSLLNSNELIRFSNALDHAIQNGMLYGNLELNAEQVATFRDAFGDGIEPEFIVERRSDSAYCDRRLEIDIQVSETEIRCTLRDEGIGFNAKLINADVESAIQNEDGHGIGLITSFMDQVSVDESQHQLLMVKHCTRQVLV
>NZ_CP042914.1|WP_162276066.1|1027878_1031070_+|response-regulator
MLLEHLEQPVWIASADASRLLYINPPCRRLLGAAADAVDSGTPWWRQWVPVHEQSQMQRAIDRCRVDEPLTVRLTQGSGSDAATLDLTLIRDPSGELAAIVQPSANIMPRNWSHPGTFRNLLDSLPLALVVKNLRGERIFVNRFYLDLHKIRADAVLGKTDFQLFPADIAEQFTADDRFVIDNEQVVQSTEQLPLNDGRMRWIERIKGPARDVEGNIIGVQLLFWDVTERKRIEAELDEERYLLHSLLDNLPDAIYFKDRESRFRRVSMGMAKKFGWASPSDAIGKTDADVFTSEHADQAREDELRIMETRIPIVARIEKETWPDRDDTWCSSTKLPLCDGKGQVVGTFGMSRDITDLKRIEFQLREARDAADAANAAKSQFLANMSHEIRTPMNGILGMAELLTKTSLDQRQADYVGLIQQSGQSLLRLLNDILDFSKIEAGHLELEVTPFSLSESVARAMQMLAVRAETQGIDLACRIHPGLPPVVEGDPTRLRQVIVNLAGNAIKFTEQGEVVVQVEPIEPPSSAEEWGAASGTDSADTPGTGNASEVRTLWIRVSVRDTGIGIAADKLETIFQAFTQADASTTRRFGGTGLGLAISARLVQLMDGQLAVESEPGVGTTFQFTLPLRIGDARQAPLDLQTAIQDLAQLPVLVVDDESTNRRVLIELLEYWEMKPTAVNSAQQAMELLCQAAERGEPFRLGLFDMMMPDTDGLMLTEQVRRNPLLKELPVIMLSSMAHGADLERCRRAGISHYLLKPFVHSELLNAILTELDAGPAKPPTEEPPPMPQGNLRILLVEDGVVNQRVATELLGLRGHRVTLAENGREAVEMWHPNRFDLVLMDLQMPEMDGFEATRAIRQREQQSNVRTPIIAMTARVMPDDRRLCVEAGMDGYIAKPVDPDKLDDVLAGYHSPATESIAEPAVATEPADDGHRDDDAAAPTQPLEDGGETVLDLQPMLKRFGGRQAVVLQLADVFFEECPVLLEQLHAAIRDQDGELLHRAAHTLKGTSDLFGGQQLQRLCASMEATNQQQAWTQLAIEVQAIEAAAKRLLGALRQETEGLR
>NZ_CP042914.1|WP_168215693.1|1031298_1032369_+|DUF1559-domain-containing-protein
MGICMIASELNVSKKRHGFTLVELLVVIAIIGVLVGLLLPAVQAAREAARRTQCVNNLKQLGLAMHNFHDTYGEFPKNYTKVGDSAWHATSANFHILPYVEQNNLYDQGQSRLMDPSLTPADRWNFFYGTVFNTPVPGFVCPSSPAAPARGTHPNGWDGPGVNYGWSTGSRTETVWAGKNFNGMISYADGLRMADVTDGLSNTLLASELLSGSGATGSSGRYPYDFFYSSNAPFSAVVDKDYPTQAELNAIGIAARDSATGVRSNNGTIWGWYAAAQSTLTTSATPNWEYPTTGGDCCPGGAHDWGVGIVPPRSMHPGGVNGVLGDGSVRFLTETVQLRTFQNLGNRRDGQPLGEL

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Crispr_ID: NZ_CP042914_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_6

1500312-1500437

Orphan

Consensus_repeat	Method
TTTTCCGCCGAGTCGTCCAAAGTCTGGCGACTTCGGCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_6

>merge|NZ_CP042914|6|1500312-1500437|CRISPRCasFinder
TTTTCCGCCGAGTCGTCCAAAGTCTGGCGACTTCGGCTACGACGAAACGCCACCGCCCCCGTAGCCGAACTCGCCAGAGTTTGGATTTTTCCGCCGAGTCGTCCAAAGTCTGGCGACTTCGGCTAC

>NZ_CP042914|6|6|1500312-1500437|CRISPRCasFinder
TTTTCCGCCGAGTCGTCCAAAGTCTGGCGACTTCGGCTAC	GACGAAACGCCACCGCCCCCGTAGCCGAACTCGCCAGAGTTTGGAT
TTTTCCGCCGAGTCGTCCAAAGTCTGGCGACTTCGGCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068142329.1\|1498367_1500170_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293765
NZ_CP042914.1\|WP_068142327.1\|1492175_1493273_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP042914.1\|WP_068142332.1\|1502797_1503553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080114.1\|1505126_1505453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068142337.1\|1508783_1510289_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP042914.1\|WP_068142325.1\|1487871_1489563_+\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP042914.1\|WP_068142326.1\|1489929_1492158_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|372582
NZ_CP042914.1\|WP_068142335.1\|1506856_1507807_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP042914.1\|WP_068142322.1\|1476726_1477590_+\|M56-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320700
NZ_CP042914.1\|WP_068142321.1\|1476335_1476734_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP042914.1\|WP_162276043.1\|1493755_1496599_+\|DUF1553-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042914.1\|WP_068142338.1\|1510285_1511242_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP042914.1\|WP_084428104.1\|1507803_1508784_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380625
NZ_CP042914.1\|WP_068142330.1\|1500489_1501407_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|226145
NZ_CP042914.1\|WP_068142412.1\|1505768_1506788_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239118
NZ_CP042914.1\|WP_068142411.1\|1496660_1498067_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042914.1\|WP_068142333.1\|1503783_1504644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080112.1\|1480098_1487844_+\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982
NZ_CP042914.1\|WP_068142331.1\|1501508_1502795_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP042914.1\|WP_068142323.1\|1477615_1479739_+\|DUF4838-domain-containing-protein	unknown	unknown	gnl\|CDD\|374379

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068142329.1\|1498367_1500170_+\|arylsulfatase	gnl\|CDD\|293765	cd16146, ARS_like, uncharacterized arylsulfatase. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP042914.1\|WP_068142327.1\|1492175_1493273_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.08067e-55
NZ_CP042914.1\|WP_068142337.1\|1508783_1510289_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP042914.1\|WP_068142325.1\|1487871_1489563_+\|potassium-channel-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.07576e-27
NZ_CP042914.1\|WP_068142326.1\|1489929_1492158_+\|trypsin-like-serine-protease	gnl\|CDD\|372582	pfam13369, Transglut_core2, Transglutaminase-like superfamily.	1.39945e-44
NZ_CP042914.1\|WP_068142335.1\|1506856_1507807_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.44207e-128
NZ_CP042914.1\|WP_068142322.1\|1476726_1477590_+\|M56-family-metallopeptidase	gnl\|CDD\|320700	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase. This family contains peptidase M56, which includes zinc metalloprotease domain in MecR1 as well as BlaR1. MecR1 is a transmembrane beta-lactam sensor/signal transducer protein that regulates the expression of an altered penicillin-binding protein PBP2a, which resists inactivation by beta-lactam antibiotics, in methicillin-resistant Staphylococcus aureus (MRSA). BlaR1 regulates the inducible expression of a class A beta-lactamase that hydrolytically destroys certain ?-lactam antibiotics in MRSA. Both, MecR1 and BlaR1, are transmembrane proteins that consist of four transmembrane helices, a cytoplasmic zinc protease domain, and the soluble C-terminal extracellular sensor domain, and are highly similar in sequence and function. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. All members contain the zinc metalloprotease motif (HEXXH). Homologs of this peptidase domain are also found in a number of other bacterial genome sequences, most of which are as yet uncharacterized.	2.84572e-49
NZ_CP042914.1\|WP_068142321.1\|1476335_1476734_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	3.68707e-30
NZ_CP042914.1\|WP_162276043.1\|1493755_1496599_+\|DUF1553-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	6.04805e-89
NZ_CP042914.1\|WP_084428104.1\|1507803_1508784_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380625	cd19970, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	7.4923e-141
NZ_CP042914.1\|WP_068142330.1\|1500489_1501407_+\|amidohydrolase	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.14393e-24
NZ_CP042914.1\|WP_068142338.1\|1510285_1511242_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.44514e-75
NZ_CP042914.1\|WP_068142411.1\|1496660_1498067_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	2.52322e-159
NZ_CP042914.1\|WP_068142412.1\|1505768_1506788_+\|nucleoside-hydrolase	gnl\|CDD\|239118	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.22488e-99
NZ_CP042914.1\|WP_148080112.1\|1480098_1487844_+\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	4.3047e-58
NZ_CP042914.1\|WP_068142331.1\|1501508_1502795_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	1.02766e-12
NZ_CP042914.1\|WP_068142323.1\|1477615_1479739_+\|DUF4838-domain-containing-protein	gnl\|CDD\|374379	pfam16126, DUF4838, Domain of unknown function (DUF4838). This family consists of several uncharacterized proteins found in various Bacteroides and Chloroflexus species. The function of this family is unknown.	5.09081e-48

>NZ_CP042914.1|WP_068142329.1|1498367_1500170_+|arylsulfatase
MSRLSYLTIMVSALLLSFSALSQAAKPNVILVMADDQGYGDLGCTGNPIIKTPNIDQLASESSGLSDYHVAPTCSPTRCSLLTGHWTNRTGVWHTIMGRSMLRENEVTVGQMFSDAGYETGMFGKWHLGDNYPYRPEDRGFTEVFRHGGGGVGQTPDVWNNAYFDGSYFHNGELVPAEGFCTDVFFDRANAFITKCAKQEQPFFAYISTNAPHGPLHCPQKYLDMYEGQSDKIAAFFGMITNIDDNVGKTRRLIEELGIADDTIFVYTTDNGTATGANIFNAGMRGRKGSPYDGGHRVPFFLHWPAGGIDQQHDVDELTHVVDIVPTLLAMTGVEKPAEVKFDGVSIADLLDPKKDVDWPERFVISDSQRVRDPIKWRGSSVMSQKYRLINGQELYDMTADPGQQKDIAKQHPEVVAEMRAFYDQWWAELEPTFSQTTEIYLGHPQHPVVSLTAHDWIQGVNPPWHQGSIRAANLKQRGSKKLVHEGHWAVKALRDGKYRISLRRWPVESRTAINASLPAGDNVPGASKAFRTTPGKSIGATHAVLRIDGQDIDRKPVEADVEEVSFVTELKQGSHQLAPFFEVEQGELGAYYVVVTSLD
>NZ_CP042914.1|WP_068142411.1|1496660_1498067_+|DUF1501-domain-containing-protein
MERFIASPRRQFLQRCGLGIGSLALTDMLAGQAATAGSANGTTAPHHPARAQHVIHVFLNGGMSQVDTFDPKPELTRRAGQMLPFDNLQTERKTGVALPSPFTFKQHGECGMPISDLFPHVAECADELAVIRSMHAELPSHEMMLMLMNTGHSRLVRPSFGSWLSWGMGSENQNLPGFVALCPGGLPVGGAGNWRSAFLPGAYQGTLVDTAHTDPTKLIRHIRNERLSKADQQAQLEVLQALNAKHLAQRPDEAALEARIQSFDLAYRMQMEATDAFDISQESEHILNLYGEGTQNRQLLLARRLVERGVRYVQVWHGAGQPWDSHSNIKATHRNVAKQCDQGIAALIKDLKQRGLLDKTLILCSGEFGRTPSVELGQNGSGASQGRDHNHWGFSLWMAGGGVKGGTIYGATDEFGFKAVENPVSVHDLHATMLHLLGFDHERLTYRYAGRDYRLTDLSGQVVRDVIG
>NZ_CP042914.1|WP_162276043.1|1493755_1496599_+|DUF1553-domain-containing-protein
MTPCRVPARRTYIWIAMLLCLAVAYCGSHATANEIRFSRDVRPILAEYCVQCHGPDEQHREADLRLDIADASTAAAIVPGDPDASEMILRLTAEDPDIRMPPPEMQKRPTAEEIDILRRWIAEGAPFEGHWSYQPIRRPDVPSPRGAASTDIDRFVVAALEKNELQLAPRLDRRRLIRRASFDLIGLPPSPAEVEAFVNDEAADNEAFAKVIDRLLQSPRYGERWGRHWLDIARYADTHGGSAIGFKRFPFSYTYRDYVIAAFNADLPYDEFILQQLAADQLDLPANDPALAALGFLTVGMQFRSVHDLIDDQIDVVTRGLMGMTVACARCHDHKFDEIPTTDYYALYATLASSEPPEDLPVLGKPSLTDQLRNYQDKLEKRQTIYRDMVRDQTEVMRNRLRSQVGLYLTELAKRVPEQDLSAAFLSYRTDDVRPVVLHRWRLYMRTLSEQDPVFFAWVRLQDTPEDQFQASCEQLVQTLKAENGDPAKFANLHNMSVEAPKWNPRVLSTLEEAKPASLVELAAAYGQLFADVHLDWLTALRDASLEATPDEQIVTDEDPRHAEINSAINQQLRRHLYEPGTPTDVPDNVAAKLLNRTVKDKLSGKRGTIHSLHLNSPGSPPRGMVLTESATPPETRVFLRGNPLSRGEPVTARFLTAVAPHDSTPFADGQRRRGLAEAIIDPANPLTRRVIVNWIWRHHFGLGLVRTPDDLGTRGTPPTHPQLLDYLATVFAEDDWSINKMHRRIMLSDVYQQASVENPAARRRDPENRLLWRMPRKRLEMESMRDALLAVSGELDTTTIGGRPFDLETNPVVPRRSVYAFINRDIISSLSSTFDGADPTSCTVKRPDTTVPQQTLYALNSAFIQDRAAAVAKLAVDAADADADRVDWLYQRIYLRRPDKAERDLAIGFVTRPQAEGDAADDDTATDRWTQLAHAMLASNEFIFLD
>NZ_CP042914.1|WP_068142327.1|1492175_1493273_-|serine-hydrolase
MKRRTILQAGLGLAIGSPLLAAMKQENFDAVAKVLEQGTESRLLDAAAIYVRQGATQFSRSFGAAKTEDAVFLLASISKPISIAAVMTLFDRGLFRLDDPVHKFIPEFTADGRDKITMRQLMTHVSGLPDQLPENAELRSRHAGLDEFVDAAIRTPLRFAPGSRYRYSSIAILLASEVAQRISGKSIAELVDETVLGPLEMKHSALGVGRLDFDSLMRCQVENSAPESGAGDPTSKDWNWNSRYWRNLGAPWGGAHGSAPDVARFLEEFLHPQGKLLKPETMQSMISNHNPAHLRPRGLGFDLGKRLGGAYLSDNAFGHGGSTGTLCWADPQTDSIFVVLTTLPSNAADPHPREVTSRLVGEAVG
>NZ_CP042914.1|WP_068142326.1|1489929_1492158_+|trypsin-like-serine-protease
MLRRCFVLIFMIGLAPSCLLPLWADDANGSAPHDASFQSLIEQVRPSVVTIKTLGRDGDQIQMGTGFVMDAEGLIATNFHVISEGRSFTVETRSGRKLPVTAVEASDRSGDLALIRVDVTGAPLPALSLSESELPTQGVRVLAFGNPLGLQDSVVAGIVSAVREVEGREMIQLAIPVQPGNSGGPVVDSQGVVVGIVNMKSAIDDNLGFAIPIGELQTLREKPNPVSIDRWVRLGKIDETKWTPIFGATWQQRGGLLSARGLGNGFGGRSLCLRSPVSDELPKEIAVEVRLDDESGAAGLAFHSDGEHRHYGFYASNGRLRLTCFKGPSVYSWQVLEELETQHYLPGQWNRLRVRLEPDGLKCFVNGQLVIESPDRQLTSGKFGLVKFRDTNPDFKSFQFGDDLPLRSLSDQAQDLLDDVIANPDKLSMVEASRVSQLGQSSDAVSRKLERQAVQWERQAERLRRLAADVQVAPTLERLADLLADPSAADRQLLRGSLLIAKLDNPDIDVDAYVGRVDAMAAEILADVPEDADVVERRKALHRYLFEENGFHGGRAEYDHPANSHLNSVIDDREGLPITMSILYMELGKRLGLSIEGVGLPGHFVVKHVISDSDEQLVDVFERGKLLSREDAAAIVAAYTNRVLTDDHLRGQTVVEILARVLNNLIGVAGRTQDVESLHRYCGALIAVRPDSVRARMLRSQVRAATDRRSGAIEDLDWLIEQDPPGLDLGATLRLRESLLDK
>NZ_CP042914.1|WP_068142325.1|1487871_1489563_+|potassium-channel-protein
MKSFTTLYLHFMRNRASRRNLRVLAQFLFILLAMIVVYSWTFHYLMAWEGRRYSWITGFYWTLTVMSTLGFGDITFHTDLGRLFSMLVLMSGTVFMLILLPFTFIQFFYAPWMQAQEAARAPRELPANTSGHVILTHYGPVDAALIKRLTQYKYPYVVLEPEVTEALRLHDLDLKVVVGELDDPETYRRLRTDKAALVVTVGTDVANTNVAFTAREIAEQVPIVATATDVASVDILELAGCTRVLELAEMMGRSLARRVIGRDAKTHVIGQFDELLIAEASAAGTPLIGRTLQEIRLRDHVSLNVSGVWERGRYQNAGPDTRITDNTILVLAGSREQLAEYDALFCIYHTSDVPIVIIGFGRVGSATARELAQQEIEYRVVEKNVKQNDDNARLIEGDAADLEILKQAGIMETPAVVITTHDDALNVYLTLYCRRLRADIQIISRATLERNVHTLHRAGADFVISEASMGANAIFNLLRRSDVLLLAEGLDVFRVKIPPSLAGKTLTEAAIRHRTGCNVIAIHTAAGAQVNPNPGTALPADGEIVVIGSDESEQQFLDLYVNR
>NZ_CP042914.1|WP_148080112.1|1480098_1487844_+|DUF4347-domain-containing-protein
MVAVQQRCAGWIDRARYLLVEALQTAPANHATCDTAVLEDRVLLSATPIVQAVADGGLERGDLPLTFDPSTTADNATVTPGVRQAVVQRRELVIVDPAVGDYQQLIDGLETQDKHDVEVLLLDGQRDGVLQISEFLAGYEDIDAIHIVSHAENGAVKLGNVWLSESNLAGYAASISGWQTTLAGDADILFYGCELAENQAGREFVQSLSGLTGADVAASIDGTGHVSLGGDWEFEYVVGVLETEQVFAIDVQQHWTHLLATTETHYFLVGNGIPEATLDTALPTSTSMQDYDAGRHAGDGILIQKGGSGSGETDAVKHQVWTTTSGNISIDGQVTLSLWSAVKDFDDSKGATVHAYLIDVQQNGSDPQVLGTATVSRGVWSSSGDWVEDTFDFGPITQSLGNPRRLQVKIVVDGSSGDDMLFAYDDVFHRSHLQVGMTTSNADPSLNPGGGALNYTENDPAAPIAPSLTLSDDDANLQWAVVQITGNHQSGEDGLSFSGPIPGGLSMSYDANTGQMVFRGTSSVANYRAALQGVRYENSSEAPNADARTVTFSVYDGQNLSSATRAVTVVSVNDAPTASATATDSGQEDQNLVYTHAQMLSLIGGADVDNASDDLDINITNVTNATLSQSGSGDATTYTFSLTQPTHANGYAVTFDYEITDVEPLSSVVGSATITIQAVNDAPGLVIGGDKNVNEDTGLHFVALFAASTAGGGLDEAGQSFTYIVNNNNASLFSVAPDIDALGNLTYTLAPDAFGTATVTVAVQDSGGTANGGVNTSASQQFNINVANSNNDDAFVAVNNGLTLNENATSGITATELRADDPDLPDASSLVYSITDAPTQGQLELTTAPTVAVLSFTQDDIDSGKLVYAHFGDEAPLTDSFTFTVSDGIGSPTAPQVFNITINAQNDAPINAVPGTQATTVDTALVFSTGNSNQVSVSDDDAGAADVEVTLNVTNGNVTLDLPVNPATATGPEFSLASNSTGVQREASVASLPDGRFVVVWSGSGPGDSDGIYMRQFNVDGTAVGNQTRMNANGAKAKLQSQPSVAVNDSGRLVVSWTSNDQDAASTDGVFFRAVNWDGSNDTGEIAANTSTAGDQSESVVEIDADGNVIVVWMDDNALDGHNEGIFARRFDAAGTPIDGTEWQVASTWSYKQRTPAIAMNNSGQFVIVWQDSKADGQNEGVFAKRFDSNANPLDAPGTPGEAEFQVNTSWAKDQHLADVAIDNAGNFVVVWAADQQDASEEGIWGQLYDASGNRTGPNEFQVHTTETWDQINPSVAMDANGDFVVAWEHDTTGLGPKDIRFQQFDKTATKIGGEQTANNPTTGDQNAPDVSMDAEGNFVIVWDGQTTAEADDGVVARRYELPPPPLTFSSGDGIADSLVKFRGSVADVNAALEGMLFAPTPSFTGTATINIDVDDLGNTGPGGAKSDNDNITINVTNANASPTGSVTISGLATEDQVLTAGNTLADADGLGAISYQWQRGGVDIGGATGATYTLDDVDVGTMISVVARYTDGGGFNESVSSAAVGPVANVNDSPGGTVTITGTPSEDQILTAANTLTDDDGLGAISYQWQRGGVDIGGATGVTYTLGDADVGAMISVVARYTDGGGFNESVSSAAVGPVANVNDSPGGTVTITGTPSEGQILTAANTLTDDDGLGVISYQWQRGGVDIGGATGATYTLDDADVGTMISVVASYTDGGGFDESVSSAAVGPVANVNDSPGGTVTITGTPSLGNVLTAGNTLTDADGLGAISYQWKRNGVDIGGATGTTYTLVAADVTTMITVVASYTDGQGTPESKVSAAAGPVSGSNTSPTGSVTISGTPAENQTLTAGNTLADADGLGAITYQWRRDGVDIGGATGATYTLDDTDVGTMISVVASYTDGGGTNESESSAAVGAIANVNDTPTGSVTISGIPTEDQTLTAANTLADVDGLGAITYQWRRNGLDIGGATGTTYTLYDADVGTMISVVASYTDGGGTNESRSSVAVGAIANVNDTPTGSVTITGIPTEDQTLTAGNTLADADSLGAITFQWRRDGVDIGGATGATYTLNDADVGTMISVVASYTDGGGTNESRSSVAVGLIANVNDTPTGSVTISGIPTEDQTLTAGNTLADVDGLGAITYQWRRNGLDIGGATGTTYTLDDADVGTMISVVASYTDGGGTNESRSSVAVGAIANVNDTPTGSVTITGIPTEDQTLTAGNTLADADGLGAITFQWRRDGVDIGGATGATYTLNDADVGTMISVVASYTDGGGTNESRSSVAVGAIANVNDVPVGQPRIAGTARAGRTISANTSNIRDADGLGAFSYQWFRNGTAIVGETNATLTLGDDDIGQSITVAVAYVDGHGAAEGPLGSLAITPTELTELPPTRPEATRLSPDTEPPADVSEELAPAENDESTNNSATVPPATSSQPSVTNRATAGVPQGALLVLAQQKSLSALFTSQADAWIGTIGAEAAAEPISEQDVADVRDPVATAYATAMGQIRAAISQPELWHGISSMQNQVGSSVSTFTFAVGATVGATTGMTVGYVVWVIRGGVLLSSVMANLPMWRLMDPMAILNAVDAAEQDDESLESMVEESPPDAR
>NZ_CP042914.1|WP_068142323.1|1477615_1479739_+|DUF4838-domain-containing-protein
MIRFALFPVLMLVALATSVAARQWTDATGQFRIQAELVRIDAGVAELRRVDGRIIRVPVSKLSEQDQRFLATQPAAEAFSIELVKNGKPVHNMICLPNDQADPAAVMALKEYRALVAKATGAEPTRVAEPQSGTPTIFFGRNPWSTKAGITADDLPSEGFRIQSVGQDIHIIGRDTAKVGAHRVTGSVGMEPGTLFGTYEFLERYYGMTFAWHDDLGTITPPQTELTIQSMHIVDHPDCFYRQFTKSPGGQANEIFGRRLRLGHPIDVRHEHNWHRIMSPDQYGQQHPEWFAEIKGKRYPKHYAEKRGGQVCTSNPEVVEHFAQAAIEYFNNTPHSQMFSIAANDGRKFCTCEKCQALDSGRTRPDGRRVITDRMITFSNQVAERVAKAHPDKRLGVIIYLDYKYAPVNVKPHPMLFLVHPTNSGFSQGVYYEGDEWSEAAMERGWHAAAGQFFKYDIWHYDQTPLYMIAPVTRHLIEKCRAQQAHGVDGGYHYIARSYELLGAGHYLLARLLWDHDFDAEAAEQQYYSALYGAAAEDVKAYYDLLENSLVKVFKEGPGEAVSEPMVASFCQRYPGANNPGLYLAAYWPILPQMDEAVNRLSAKHRQQLSAKEQERLQRLIDHHNYTLHTVNAMIMAGRKLTDTASQQDQQSFEASKSKRDQALAAIKQYRPFYAKLVGDMDTSSHTGVIYGKQPTIEVRAPSDFNQ
>NZ_CP042914.1|WP_068142322.1|1476726_1477590_+|M56-family-metallopeptidase
MVDFLSSSLSHDLFLTLVTFGWLQQASRTASPLAVSAAVPAERPPSTALTSPPAGTASPTADHNRLREQPSERQPSSHPAGGSSIKALATTQPYVLSSWLAGVLLSGVRLSVGIFGLFWMRSDRRELPSELMRYSQTIAARLGLGSARVFASGRTPMACVAGLLKPVVLLPTSWLSELPPDVLQAVISHELAHIRRWDTWVNLLQRVLETLLFYHPMVWWLSNRVRYEREQCCDSLAVNASGDRRIYIRALEQVGRLQVRGNLNLPPAFTGDRKMNLLSRVQHILRD
>NZ_CP042914.1|WP_068142321.1|1476335_1476734_+|BlaI/MecI/CopY-family-transcriptional-regulator
MARHRQGTPTEVELEILHVLWNHQPATVRQVVDVLNQSRPRAYTSILSMLNVMFEKGLVTRKMQGRAHVYSAKKTREKTLGRVVQDMLSRAFHGSTTSLIAQVLEQSKPSADELDQIRQTIEQWESGEGNDG
>NZ_CP042914.1|WP_068142330.1|1500489_1501407_+|amidohydrolase
MKPFRRRDFIRGLGAVPLCTATGLAEDAPSSVVVDTHLHCFAGQNRRFPYHPRAPYRPSSAATPEHLLQCMDNAGVDFAVVVHPEPYQDDHRYLEHCLKVGQERLKGTCLFFADRPGSVEKMAPLVQRHPGRIIAARVHAYAPDRLPPFGTKELRQLWKTASDLGLAMQLHFEPRYAPGLEPLIREFKDTTVVIDHLGRPMQGTPEEHEVVVRWSRFPNTVMKVSSIPDQNRYPHRDVKPVIRRLTDAFGAERMIYGGGFNAAATGESYRDYRMHVADLLSHLSDADRRKILGGTAAKLYKFNGS
>NZ_CP042914.1|WP_068142331.1|1501508_1502795_+|PQQ-binding-like-beta-propeller-repeat-protein
MKPFTVVLCTPFLFLLTATPCLADNWGSWRGPTSNGISTETSVPTEWSKDKNVAWRVELPGPAGATPVVWDDQIFLTTVDGSSLLLMCFGTDGQEQWRREISKGNKAARGDEGNSASPSPITDGKHVWSFMGTGDLACFTVSGQPVWHVDLQERYGKFDIAFGMSATPVLHEGRLFVQLIHGDGKPTTQEAIVVAIDANSGEHLWKVDRVTGAAKENEHSYASPILYDFGDRTFLITHGADYTVAYGLEDGKEIWRLGGLNPQGNNYHPTLRFVASPAAAEGIVVCPTAKNGPVFAVAPDRQGDLTDSDAVLWVRDQHTPDVPSPLIHGDLVYLCRENGMLLVLDRNTGQEVYMERTHSHRHRASPVFADGHLYLTARDGKITVVKAGKEFQIVAQNDTDETMSASPVISDGTIYLRTFEALWAIRKD
>NZ_CP042914.1|WP_068142332.1|1502797_1503553_+|hypothetical-protein
MTKPRARTVSGGIVAVAASMWFASAPFVIRTNPNVPAVFLFGSTMFFCCIVGAWLGLGKNHWRWLLAIVTPVLLGVGVSMAISFRSEERTVFICMFCGATGLAALTTSLLRVVKGDYKQIAPGASTPDALQFGIRDLLIWTAASAVIIAILKAILGAEFRIHSPEVTLIGVVSVSFSLATVIDIWAIHGQQLTPTKVLVVIVMTCCAMLANYFAIARYQWFFPSVVLLWQILAVAIMLSFRLRGYRFVKRL
>NZ_CP042914.1|WP_068142333.1|1503783_1504644_-|hypothetical-protein
MVFSTSSIIVLSSDDAKTWNTVHQFSVPQRDTRDPHFLAFRGKLFLYTGTWYSGEGELPRKDYDINKHLGFAVWTSDGKTWSDPQQMEGTYGHYIWRAVSDGETAYLCGRRKRGYSEAESGAGGAAILEGALLESSDGLHWKFRSLFQTQQGNETAFLIEPDRTMVALSRQRGASAQLARALPPYQEWDRKTLPHYVGGPLLAKWGDHWLVGGRKNTDQGPKTALYWLIDDELKPIAELPSGGDNSYPGFVALDAQHGLLSWYSSHQRDSDGRPITAVYLADIVKQ
>NZ_CP042914.1|WP_148080114.1|1505126_1505453_-|hypothetical-protein
MNAMISATKDLPVVPRIALAAAFLLWFAGENASAQTIRYREHGEILQLNVKRGLYEPSIIKYQGRYFLTMRNDLRAYVTVSEDGLNNRAGMCRRWRRQTYLERTREST
>NZ_CP042914.1|WP_068142412.1|1505768_1506788_+|nucleoside-hydrolase
MGIAAFSMSMLVATAIPSALADQNSSPVPLIFDTDLGNDCDDALAMGVIHALQSRGECELLAVTITKDHELAAPFADVINTFYGRGDIPIGVCRSGVTNQAGKFNVLAKQSDRYPHDLKSGKDAPDAVTVLRKALASQDDGSVVIAQVGFSTNLANLLASEPDDISPLSGKDLVAKKVRLLSVMAGAFTQIRNGKGELHDHKEYNVVKDIPAAQAVCKDWPTAIVWSGYEIGKNLPYPHQSILQDYQYVDHHPLAEAYTVYNPPPHNRPTWDLTSVLHAVRPDRGYFDLSPPGRVSIADDGLTTFEPSADGRDRYLVIHDHQKGRTIEALVQLSSQPPK
>NZ_CP042914.1|WP_068142335.1|1506856_1507807_+|ribokinase
MNQTSATSHPAPKIVVLGSINMDLVVRCARLPLPGQTVLADSSAEFCGGKGANQAVAAAVAGADVTMIGAVGDDAFADRLLNNLRQHGIHDACVARRVDQASGLAVISVDQQGQNSIVVVSGANGSVSPADVRAAEAIIEGCDLLLVQLEIPLDTVLAGIKLAQQAGVKVVLDPAPAPSDVPPELLKVDVLCPNESEAAELTGRPVESLDDARRAAETLHHRGADHVALTLGERGTLLYSQGTSEIIPAYPIDAVDTTAAGDAFAGAFATRWSQTGDLQEAVRYANAAGALAASQHGAQASMANHQSIENLIRSQV
>NZ_CP042914.1|WP_084428104.1|1507803_1508784_+|sugar-ABC-transporter-substrate-binding-protein
MKTFLNLGLCLGLCLFALLAGCGPKSTSTDPAADGAPEKPRVALIMKSLANEFFSTMAKGAEQHQAEHSDQYTLVVNGIKDERDLSRQVSLVEEMVASGVDAIVIAPADSKALVPALRRAKQAGIVVINIDNQLDQDILQQEDVVIPFVGPDNLAGAKKVGDHLAKALEGSSNKVAILEGIRTSFNAQQRLLGFQAAMDEAGITIVDSQSAEWEMSKANTIASSMLSEHPDIAAILAANDSMALGAVAAVKTAGRSGEVKIVGFDNITAIQTAIREGKVLATADQHGDQLAVFGIEAALQEIKGEPVSENVETPVDLVTSQTLSTP
>NZ_CP042914.1|WP_068142337.1|1508783_1510289_+|sugar-ABC-transporter-ATP-binding-protein
MDAPLLQTRGLTKRYGDVTVLDDVSMEVRGGEIHALLGANGAGKSTLCKIISGLTPASDGSMQLGGVDFNPQAKQQAEAAGVEIVQQELNLIGTLSVAENIFLTRLPSLRGVLRQRQLHQQTRAQLDRFGLTDVPTHAAVETLGVGRQQMVEITTALARQCRLLILDEPTAALSGSESEQLFAHLRSLRDQGVGILYISHRLDEVAQLTDRITILRDGKFVATRNTSSASTDEMVDLMSGQNLANKRSAHTCHRRDEIAMRVRSLSNAVVRDVSFEVRRGERLGITGLVGSGRTELLRAIFGADVATTGSVFLQGDSQGRRFQSPSQAVQAGLAMVTEDRKQNGLLLSQSISTNTSLSSLQARFSRMGLIKGREERRAAQRWVDELETRCQDIDQPAGTLSGGNQQKVVVSKWLVRDAEVFLFDEPTRGIDVAARRRIYRLLESLAAEGKASVIVSSDLEELFEICDAIAVMCEGRLVDVFQRDQWSHEKIMQASFSGYVK
>NZ_CP042914.1|WP_068142338.1|1510285_1511242_+|ABC-transporter-permease
MKQSKWTQSLVQYGGLLAVLLIMVIVFSLSSQNFFQMSTLVTIANQVPALTFLAVGMTLVLIVGGIDLSVGSLLALSSAVLGVLMANHGWSIWTSLGVALLVGGLAGLINGAISVGLGIPSFIVTLGMLEIARGATKVVTDSQSVFIGSRVEWFGQPLAGMLLSPAFITAVLAVIVGQFVLTQTVFGRYCVAIGTNAEAVRMSGIRSAPYAIAVFGISGLMCGLAGLAQTSRLSTADPNGAIGDELHAIAACVIGGTSLMGGRGSVISSFIGVLIIQVLETGLASIGVPDEHKQIITGIVIVVAVLLDALRSRWGKTT

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Crispr_ID: NZ_CP042914_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_7

2008992-2009093

Orphan

Consensus_repeat	Method
GGGCTCGGGGCAGCAAACCGGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_7

>merge|NZ_CP042914|7|2008992-2009093|CRISPRCasFinder
GGGCTCGGGGCAGCAAACCGGAGCAGGTTCGCAGCAAACGGGAGCCGGAGCGGGTTCGCAGCATACGGGAGCCGGTGCGGGCTCGGGGCAGCAAACAGGAGC

>NZ_CP042914|7|7|2008992-2009093|CRISPRCasFinder
GGGCTCGGGGCAGCAAACCGGAGC	AGGTTCGCAGCAAACGGGAGCCGGAGCGGGTTCGCAGCATACGGGAGCCGGTGC
GGGCTCGGGGCAGCAAACAGGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068131411.1\|2017721_2018960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068132431.1\|2006463_2007045_+\|peptide-chain-release-factor-like-protein	unknown	unknown	gnl\|CDD\|376337
NZ_CP042914.1\|WP_068132432.1\|2004281_2006474_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366149
NZ_CP042914.1\|WP_068132437.1\|2001211_2003275_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP042914.1\|WP_068132443.1\|1997403_1998396_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|225921
NZ_CP042914.1\|WP_068132435.1\|2003271_2004279_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP042914.1\|WP_162275873.1\|2019209_2019461_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|379177
NZ_CP042914.1\|WP_068132442.1\|1998422_1998836_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068131409.1\|2015304_2016303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379468
NZ_CP042914.1\|WP_084426120.1\|2016581_2017622_+\|lipase-family-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP042914.1\|WP_068132505.1\|2009679_2010042_+\|TerB-family-tellurite-resistance-protein	unknown	unknown	gnl\|CDD\|143581
NZ_CP042914.1\|WP_148080149.1\|2011844_2013125_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042914.1\|WP_068132448.1\|1995975_1996527_+\|response-regulator	unknown	unknown	gnl\|CDD\|381113
NZ_CP042914.1\|WP_068131418.1\|2019481_2021482_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP042914.1\|WP_068132446.1\|1996519_1997023_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068132439.1\|1998843_2000775_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP042914.1\|WP_084426108.1\|2013239_2015192_-\|DUF1553-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042914.1\|WP_068132429.1\|2007041_2008391_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NZ_CP042914.1\|WP_068132425.1\|2010071_2010728_+\|phosphopantothenoylcysteine-decarboxylase	unknown	unknown	gnl\|CDD\|377227
NZ_CP042914.1\|WP_148080148.1\|2010813_2011839_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259999

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068132431.1\|2006463_2007045_+\|peptide-chain-release-factor-like-protein	gnl\|CDD\|376337	pfam00472, RF-1, RF-1 domain. This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.	1.73358e-15
NZ_CP042914.1\|WP_068132443.1\|1997403_1998396_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|225921	COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism].	3.45263e-62
NZ_CP042914.1\|WP_068132435.1\|2003271_2004279_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.71697e-16
NZ_CP042914.1\|WP_162275873.1\|2019209_2019461_+\|PAS-domain-S-box-protein	gnl\|CDD\|379177	pfam13426, PAS_9, PAS domain.	3.15744e-09
NZ_CP042914.1\|WP_068132432.1\|2004281_2006474_+\|hypothetical-protein	gnl\|CDD\|366149	pfam00529, HlyD, HlyD membrane-fusion protein of T1SS. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD and HlyB are inner-membrane proteins and specific components of the transport apparatus of alpha-haemolysin. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.	1.34125e-09
NZ_CP042914.1\|WP_068131409.1\|2015304_2016303_+\|hypothetical-protein	gnl\|CDD\|379468	pfam14100, PmoA, Methane oxygenase PmoA. This family is a putative methane oxygenase.	2.91254e-74
NZ_CP042914.1\|WP_084426120.1\|2016581_2017622_+\|lipase-family-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	6.7675e-39
NZ_CP042914.1\|WP_068132505.1\|2009679_2010042_+\|TerB-family-tellurite-resistance-protein	gnl\|CDD\|143581	cd07177, terB_like, tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.	0.00108215
NZ_CP042914.1\|WP_148080149.1\|2011844_2013125_-\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	2.16252e-122
NZ_CP042914.1\|WP_068132448.1\|1995975_1996527_+\|response-regulator	gnl\|CDD\|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.01701e-62
NZ_CP042914.1\|WP_068131418.1\|2019481_2021482_+\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.37847e-50
NZ_CP042914.1\|WP_068132429.1\|2007041_2008391_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	2.13969e-115
NZ_CP042914.1\|WP_068132439.1\|1998843_2000775_-\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	3.17856e-23
NZ_CP042914.1\|WP_084426108.1\|2013239_2015192_-\|DUF1553-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	2.96212e-50
NZ_CP042914.1\|WP_068132437.1\|2001211_2003275_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.24979e-07
NZ_CP042914.1\|WP_068132425.1\|2010071_2010728_+\|phosphopantothenoylcysteine-decarboxylase	gnl\|CDD\|377227	pfam04127, DFP, DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.	1.48952e-72
NZ_CP042914.1\|WP_148080148.1\|2010813_2011839_-\|hypothetical-protein	gnl\|CDD\|259999	cd06266, RNase_HII, Ribonuclease H (RNase H) type II family (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). This family contains ribonucleases HII (RNases H2) which include bacterial RNase HII and HIII, and eukaryotic and archaeal RNase H2/HII. RNase H2 cleaves RNA sequences that are part of RNA/DNA hybrids or that are incorporated into DNA, thereby preventing genomic instability and the accumulation of aberrant nucleic acid which can induce Aicardi-Goutieres syndrome, a severe autoimmune disorder in humans. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes, but no prokaryotic genome contains the combination of only RNase HI and HIII. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.	0.000138666

>NZ_CP042914.1|WP_068132429.1|2007041_2008391_-|magnesium-transporter
MINTLFLPELREMLEFQQAGELKEFCEALNPGRTAEYMAGLTPAEAWQVLQHTTPVLRAEIFEFFDLDHKLAILNDQDPQEVAELLGGLPADDRVDLVQELSEQRVARLLALLPAEDRRDIRRLQSFAEGTAGALMTTEVAKLDERLTVREAFDELSRQAEQLETIYYLYVVDESERLRGVVSGRQLVSSLARPNTRLQDLMETDVIVVETSDDQEKVAELVERYNMLAIPVVDKGRRLVGIITHDDVIDVVREELTEDAHRIAAVAPLEDGYLRINLLQLGWKRGIWLTILFFAALLTAIALRQFDEELEKYTWLVLFIPLIISSGGNSGTQSATLVITAMTSGEVRIRDWRTILLREIVVGLMLGGFLGLLGWLVSLAVAPDSTSALVIPITVLAVVMSGCLCGATLPLIFKRLGLDPALMSNPFVAGIVDILGIVIYFNVARGVMG
>NZ_CP042914.1|WP_068132431.1|2006463_2007045_+|peptide-chain-release-factor-like-protein
MVDKPSSNPDHADGRALPWLRVVSAPHPSRQPVDDFLRDCQLTMTRRGGPGGQHRNKTSTAVVLLHQPTGVLGEGSESRSQAANRANAVARLRTTLAVVVRCRPGEGPLGEQDAALREKHRGRNVWVSERNEQRPAVLSLILDDAWTAEGELPVVAQRWQTTASQLLKVLRSHPPALDYLNRMRASWNLRPLR
>NZ_CP042914.1|WP_068132432.1|2004281_2006474_+|hypothetical-protein
MPPAPKMPLNGQRRPTPKLRQDLQWLTDDEPRRATRSSTRRIQRLLHDPLTRTFARIDGELLDDLQHAPQDCDPQWIAAADAAGLLQTRKPDPRPRRWTPASLLYVRLPGLPSAPLAARLAPISDLLFSPLAVLAWLTFIVLAAAAVPVYWDRFQASLPGLQQFFAAGNVPLLLATLVVTKLSHELAHATVCYRLGAKPGEIGVLLLCGAPCPYCDVTDSWRLSSAARRAWIMLAGVYVELIMAAIALLVWWYTPAGVPHFVAMNVMVVCGISTLLFNLNPLMRYDGYYVLADLCGSTNLRQEAADAFASVVVRPLAGKFYKSYARPSLRNVGLAFYHAATVVYRAGIAVVIACWILRFAESLSLRPLGLALAATLMVAVPLHGVRTMARLLRGRGAWRDVAWPRRWFVGGTSVLLLLALLLLPLPRGFQATGTIDLAEATPVYLPDAGRVQRVWADYGDRVKQGQPLVQLENMPLRVQASEIAGKRQTLQTRSDQLRRRAIEQTALLAQWDSQQASLQTLAQRERNLDARLAALRVLAPASGVVLPSLPSVSPAHRVSPAPGADAANSGGAATTNEAITAAFGFDREPQPFEDAPAAARASASLHWSQGSWGRADGLWCRVGDPESLVVLLDIDAKQRAHVRVGDRIRVRCEPCCGPVATLEIGSISTINASTHQALGSQTRFRVACPVPSSLAAQWPIGAPAQARLRLPGESLAERTGAWIKDLLRGR
>NZ_CP042914.1|WP_068132435.1|2003271_2004279_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MNDRGTVACLLLLACSWWWATAPTDAAAQGDPAAHRQPITGGVQVDDCVIRYSEEIDVPAAESGILENVLIEPNHEVEADQPLAMHNTDQLLLQRRIAELQKKAADEKLADDLELQYARTALEEAQAELESNRSIYETSGGAVPFSMLRKLRLAVKRAELEVEREKKQRRLAQVEIDLRAADLQMLQQQAERLVIKSPLPGVVLEVYRHTGEWVTAGDPVARIARLDRLHAHCLLTADRLPPRLCKGQAVTARWTEQGVERSLRGRVMSVDTEMLANGSYRLHAELQNVLDGDHWRLLPGTEVIMTVHPVASPTVATGPGARRSNAPPSVVGGSR
>NZ_CP042914.1|WP_068132437.1|2001211_2003275_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MDATSTTEPFRFTPNAAPAGGEDPLVRETRREIAAIVRDTAQLARQDLIPARFFTALADRTARAMAAEGVVIWRRRESAVGEVDKVSDFAAVTRVGRITDQTIDSSQWGCHAKMLSEIADSDQPAVVPSTPDARDASLPSNPTLAAAAVVPILESPTQRSEYVLEVFLEGDGGPATQRGYLRFAAQMADLAGDYLRLHRIRAGQRAQQRWDLLADVLPSLHRSLDAVATASRIVDAAVEVFQSDRASLCRVDNQRATLLAVSHVDQIDSRSDDAKQIRQLALCSEPWCDAASATEPPAERSQADDAHPDDGREEASHEALHAEAVLPIGEEGAYRLVLQRRQRREWDEGQRRDLIHFCEHAAGALDNSETYSRIPWARAATSLLPAAGRWQGSRMRWLGILAAVCILGVVAVIPVPLVVTARAELAAIGTQFLYAPSDGVVTEVFVQHGQPVQSGDVLLTITDRDLEDQIEILSGQRAVLVERSAELSTSLTDGSLRRREDQTRLQGEKKVLAQQLASIDRQLALHYEQRERLTLRSQRDGVVDGWQLSRTLQGRPVSAGQALLSVIDPATGWQVQAYVPQNRLDHVLAAAQHHDGGEEVLHANVILDSHPQHSYQARLVDLGPAITLQADVGPAARALFALPPEGLPELQTGSPAEIAIDCGKRPLLYVAFQDLIRSLRAHAGMYL
>NZ_CP042914.1|WP_068132439.1|1998843_2000775_-|AAA-family-ATPase
MTRSTPSDLPIFSSAPDTRLFQPLGAIESCREQLEAMLRTDAGLGLLIGPPGTGKSLLCQVLAETLRDPFEVVLLAEAAPRDQLSLLQNILFHLNMPYKNISEGELRLSLIDRLTQSVHSRDHGLVLIVDEAQSLPNSILEEIRMITNIVRGGRSCVRTVLAGNHELEDRISQSGLESLAQRVAVRCYLHPFNQADTGNYLRATLAAAENGPSIDEEAVAAIHFATGGVPRLIAQLMRLVLQSTTGDAIHADHVNQAWANSRQLASPVLEPEYRQPSPSENNTAENNTAENNTAENDISESGINETDINETDITADDISADDIVEFGELSCDDEAPAESVAEPAATQAPAVAENMPEIAAELDRVTDSLLRISEQQYDESDQLEDSGELEDSCALEASDESEDSCQLEDLSQLNEAGEPDDANELDETWDLEDLPGVAATSLDSEFESDNTIIDAAVQWSPEEPIPADDQLADDEPVQAAPLPLVPLVEPQTLFGDGFDEEETVPGAAVSSLPPATVLSMEDASTTDTALPADNVSETDHASTIDDSCQPEHDLHSEVACISVEASTVQWDSDPLPPTPAIGTDGVGSSEPLQDDICLNDDSDMLIIEDVVDIEPAPVRGVVFDDDPTDSVDYQRLLNRMRQG
>NZ_CP042914.1|WP_068132442.1|1998422_1998836_-|hypothetical-protein
METLAQHLVDLADQQAVSPVVMAQPGLRLRALFYVALAETLLQIAQRDVQLELVTELQGWTSGVQRLALRRLTNRLNALLPDRAVATQVAVVGRPAGTQRALVIGVACSDLQLPPWAEAVRVCTRPTQTTDFQLTVA
>NZ_CP042914.1|WP_068132443.1|1997403_1998396_+|SMP-30/gluconolactonase/LRE-family-protein
MRIPSAATLLFLLAAVPAGAQTPAAIGQIERLDPAMDELLAADAKIEVLAGGFTWCEGPVWVSDAAGGHLLFSDIPRNSIFRWSQAGGVELFMQPSGYTGVSYYGLEPGSNGLAIDAQGRLLACEHGDRRVSILTKGGGKRTLVDAFEGRRLNSPNDLVLHSNGAIFFTDPPYGLPERAEDPRRELDFCGIFRVDPNGTLTLLSKQLARPNGIALSPDQKTLYVAQSDPQNAIWMSFPVNDDLTLGEGKTFYDATDQVGKLPGLPDGLCVAADGHLWASGPGGIYVFTPAGKLIGRLLTGQRTSNCTLGGADGKTLYITADSYLCRVQLK
>NZ_CP042914.1|WP_068132446.1|1996519_1997023_+|hypothetical-protein
MSERTPVTLVVLIEPQGHRWYAGAVQADGQATPLMRSDDGNLDRYVGLDFEEQVSFLRHRLAGVLQRGCDRLYAREMKAEQFLLAADGDFPGADGGVTKALAEHFVQWMINPPVVYVRTPERFEVQEDADLQIVSGDLPTDAAAGISALAVKRTDPDDWELIPRPQQ
>NZ_CP042914.1|WP_068132448.1|1995975_1996527_+|response-regulator
MTKAHSILIVDDEPDVLFSLTGLLRRDFQVYTATSGQDALEIMQQHPIHVVMTDQRMPAMTGSELMENVRQAHPDAIRIIFTGYADTRAVVDAINRGELYRYITKPWDPDDLIDVLKDAAERYEMMASQAEIMDRLPFHLELCDQIAAACDGQAVADEQWQALKTQTQELRELHQRSGASNDE
>NZ_CP042914.1|WP_068132505.1|2009679_2010042_+|TerB-family-tellurite-resistance-protein
MDPLKHLKNIVVMAIADGALAEDEVALLSDRCVELGIGEAELQQAIIYALGDAPALQLPREPEQQEQLLRDLIRMMGADGVLAESEKRLFALAAAKMRYDSARLHALIDEVVGEHDGERG
>NZ_CP042914.1|WP_068132425.1|2010071_2010728_+|phosphopantothenoylcysteine-decarboxylase
MAKILITSGPTRQYLDPVRYLTNGSSGRMGSALAAAACAAGHEVVVISGPVQVEYPAEATVISVLTTDEMLEAACEQFARCDGVIGAAAPCDYRPKKIASEKISKNGQPYLLELVETADVIATLGQRKRADQWVVGFALETEDRHFRAIVKLERKHCDLMVSNGPEAIDADGNHVELIDSTGTVLSTLVGSKVDVAKDLMAAIQRLLIQDQDAAASPK
>NZ_CP042914.1|WP_148080148.1|2010813_2011839_-|hypothetical-protein
MLLIATDEAGYGPKLGPLVVTATIWRLPEIDATQAFESFDPLPAFAALSTPVQAAELPRLKLSVADSKRVFKPRQASGLLALEAIVLAATRWAWPHWQGSELQAWLEQLNPADVPSLQRQPWFSPSALQQPFPQSDRLAEAPSSTRPPETETICDALLKVWTGGESQLIGVRQRVVDAQRFNQRCGQGVNKAQLLSETTAGLVVEILNEHDDSAVTIYSDRHGGRAYYGGLLQHFLPAASLTVVSETARESHYVMRQQDRQLQWRFTVKGDSFTPVSLASMFAKYTRERLMDCFNRYWRDQHSGQLSPTAGYPSDANRFLRDIQPTIERLKIQSNDLIRQR
>NZ_CP042914.1|WP_148080149.1|2011844_2013125_-|DUF1501-domain-containing-protein
MTDRRAFMATAAKGLLGVHFAGAATRDANRVFAAEDTARPAVHNGRAKHVICLFMNGAMSHLDTFDPKDGTPEAGETKSIQTRLSGVAFGEHLPRLSYLAGGLAVVRSMSTETGAHEQGRYLMRTAYKQINSIQHPGLGAWLTHLQGRDNKELPGNLFIGSDNSHPGAGFLPPSLSPVPIANPALGLQNTKLPSYLTTANFNRRLALINRLDANFRTKYAGQQVEAYNEMYIEARRLMGSDALQVFDIKEEPEKIREAYGHNTLGQGCLLARRLVQAGVRFVEVNYGGWDMHQTLWDNMAEKANHLDVALGNLLRDLHSKGLLSETLVVLQTEFGRSPQVNENAGRDHHPGAFSCVLAGAGIRGGQVYGASDKRGFSVAQDHCSVADLNATIAAAAGIDTQQEHLAPNGRPFKVGGGGEPLRALLT
>NZ_CP042914.1|WP_084426108.1|2013239_2015192_-|DUF1553-domain-containing-protein
MFLHMWKLTMAAAMATACLLAVAPTAVAQRRANSANAKKPPPIRLPSSVRQKTPVSMDVAAVDSNNRSRVRGTAARIDSIVEQGLSQHGQSPNPMTSDAVFLRRIYLDVAGRIPTAEEAETFLQSKDENRREQLIDDLLGRPDYVFNMYNFWADILRLTERPQPNLIADPYLAYVKDAIRTNQPYDEWVYEMLTAEGKVWDNPAVGFQLRDDGQPLTYVDNTVRVFLGTQIGCAQCHDHPFDVWTQHEFYALAALTYGVKTRIDNRDPEYKNGNRANMLISQARDKYPNGRVPGELQRLARANTYRVKETPRQLRLPHDYAYSDAKPKQVVEPAVLYGEIPDAASSQSPRHQFAAWLTSADNEYFSKTIANRYWKRFLGVGLVEPVDDFNGDNVCVNEDLLDYLAKEIVRLGFDQKEFIRAILYSNTYQRRSTAYTLADGTAYYFPGPALRRMTAEQAWDSILTLAVYNTVPFQRPTADQMRGVLDLDMSSVSLSEAEAQAARFKETYFMGPYKRSLRQHAYKGNVLCRASELPVPLPPDHFLRQFGQGDRQVISAGQTSATVPQILTMFNGPITHVMLENGSLIYDNMSASKNPREAVELVFVSLLGRRPTQRDRVEAIREISTAERPGIGYGNLVWALLNTREFLFVQ
>NZ_CP042914.1|WP_068131409.1|2015304_2016303_+|hypothetical-protein
MLVPPDFSRRFSSCGLFVLMLGLGGLLPSPARSQSPAGESPQYTVQEDRDGVEIQLDGKPITKYWYSYAAKPILWPLVGVGGSELTRGYPMRDAADGEKSDHIHHRSFWMTHGDVNGVDFWAEGEDCGKITPLGPAKVSGGETATIDARHEWKDADGKRLLTDRWQLTFDGDEDARWIDCVFSLTASDGDVVFGDTKEGSFGIRVAGTMKVDAGKGGELVNAEGLKNKQAWGKPSAWVDYHGPVGGTQEGIAVLNHPKSYGFPVRWHVRTYGLFAANPFGEHHFTGGKDTGGKTLPAGKTWRLAFRVLLHDGEQSVEDVQRVWQQYSEQPLK
>NZ_CP042914.1|WP_084426120.1|2016581_2017622_+|lipase-family-protein
MRVALGWQSAKINRRFGEFDLQPGGPFVTEVIKDPGEVPVVVHSKVTGPVAELSFLRKALLFAELAMIAYNDEDEATRAATAAGFPDVTLFDNDGSQAFRFRNQQDCIIACRGTEPNEWNDIQADVDAAAVLAETAGKVHRGFKKEVDDLWPELETALTDNDAPLWFCGHSLGGAMATICAGRCFLSHIASEPSALFTYGSPRVGDNAYVNHVELDHYRWVNNNDIVTRVPPAWMGYRHAGQEVYLDSAGKIRKYDYVRKRMDRWRGFWRSLRRWKIDHFSDHSIHRYIDAVLSAVLQERTDVRQGQAPGKADDFASPAPPTSDAPVASDTPPSTKAESPKTSGAS
>NZ_CP042914.1|WP_068131411.1|2017721_2018960_+|hypothetical-protein
MDVSKHAEPGYHANGNRMRCRGTTKRLCSCVMAWMLCAAAQLWMAPSATAQTDLPQTDLSQTELTQADLTQAAPAVWTAEMVRVWAAQHADGARALAAESRSVGAAYDRDDDAQRKQACLTQLVLAHLAAHDRNRAAAEALSTYYRIVAIEQQLRTLRDASEVVDTLQQLAEKAEQFELPDGDPNALARQGLELAARVVDAEVGIRKLRLRLARLTCQPLAVANEALLSDQLPPAPALLSLDDAIADALAHRRDLQAIEAVCPRISSDTMPAVRSLMGVLQPGLGIGTAVATKALLFGHGGEEGKDVCARRDQCRSLAQTRREQIQDEVRLAELELQACYQRTDLADQRLSLAKQAAREQAKAVELEQRPPGADLLAALESLTVRGELQGRWMEQAVAEVELLEARGAAYRE
>NZ_CP042914.1|WP_162275873.1|2019209_2019461_+|PAS-domain-S-box-protein
MRRRGVADWNAGAEKLFGFSAEEMVGQSVLNRIVPEPQKEQFLSTLRGIERGEQIEPFETLRKNKRGQLVPVAIRVSPILDSE
>NZ_CP042914.1|WP_068131418.1|2019481_2021482_+|PAS-domain-containing-protein
MYARQTRPRDEELIETISAVAAQLSQFLERCNAEQQLQRSQEELLGSEERLRLALDAGRMGSWEWNVASGGVSWSSTLEKIHGLEVGQFAGTWEAYQQDMHPDDRDDVLATIEHTLQHGQSQYIEYRIVWPDGSVHWLESRGRVFRDDAGRPLRMIGICSDITTRKQFEQTLRFLAESSKSLATLVDYRSTLQKIASLAVPHFADWCAVDILEADGGVQRLAVAHADPAKLPLAEQLYRRYPSPPDAAHGAVKVLRTGEPEWTAEVTDAMLQRVAEDDTHLAMLRQLGLTSYMCVPLRGKDEFLAMLAHELRNPLAPIRSGLDLLAMNSAGEDTTVSLMQEQLEHVVRLVDDLLDVSRIMRGRVELRKENVDLATLVERSVHAVRPLIDSHQQQLVVRGAEQPLCLEADPVRIAQVIENLLTNASKYMDAGGRIELDVQRQDDWAVLTVQDTGVGIDAELLPQVFDLFTQASRSLDRSQGGLGIGLTLVQRLVEMHGGTVAAHSEGLGCGSKFEVRLPLTEKTCSPPAAESGDSKQAACRVCVVDDNRAAAWLLKALLEKLGDHTVQTAGDGPALLATIHGFQPDVVFLDIGLPGMDGHQVAREIRRQREFDDVLLVALTGYGQAEDRKNSRDAGFDLHLVKPPSVDQIKMVFTHPKLAAQSEQTS

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Crispr_ID: NZ_CP042914_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_8

2311294-2311356

Orphan

Consensus_repeat	Method
GTCGCCAGACGGTGGGGCAAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_8

>merge|NZ_CP042914|8|2311294-2311356|CRISPRCasFinder
GTCGCCAGACGGTGGGGCAAACACCTTCTCGTAGCTACCGTCGCCAGACGGTGGGGCAAACAC

>NZ_CP042914|8|8|2311294-2311356|CRISPRCasFinder
GTCGCCAGACGGTGGGGCAAACAC	CTTCTCGTAGCTACC
GTCGCCAGACGGTGGGGCAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068133361.1\|2319634_2320639_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP042914.1\|WP_084426453.1\|2317569_2318805_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|131032
NZ_CP042914.1\|WP_068133344.1\|2311460_2312795_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP042914.1\|WP_068133335.1\|2306263_2306746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227902
NZ_CP042914.1\|WP_068133342.1\|2310411_2311254_+\|alpha/beta-hydrolase	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080161.1\|2303887_2306170_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068133352.1\|2315163_2317113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068133445.1\|2318870_2319338_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|238385
NZ_CP042914.1\|WP_068133439.1\|2312938_2313286_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NZ_CP042914.1\|WP_068133349.1\|2313438_2314923_+\|sulfatase	unknown	unknown	gnl\|CDD\|293750
NZ_CP042914.1\|WP_068133340.1\|2307951_2310267_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274782
NZ_CP042914.1\|WP_068133312.1\|2297297_2298956_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP042914.1\|WP_068133329.1\|2302508_2302886_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP042914.1\|WP_068133309.1\|2294401_2297104_+\|glucosidase	unknown	unknown	gnl\|CDD\|367389
NZ_CP042914.1\|WP_068133358.1\|2319346_2319598_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NZ_CP042914.1\|WP_068133338.1\|2306751_2307669_+\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP042914.1\|WP_068133364.1\|2320701_2321235_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP042914.1\|WP_068133355.1\|2317118_2317544_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP042914.1\|WP_068133315.1\|2299115_2299544_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NZ_CP042914.1\|WP_084426450.1\|2302946_2303888_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068133361.1\|2319634_2320639_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP042914.1\|WP_084426453.1\|2317569_2318805_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|131032	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. [Unknown function, Enzymes of unknown specificity].	2.97544e-113
NZ_CP042914.1\|WP_068133344.1\|2311460_2312795_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	7.12961e-89
NZ_CP042914.1\|WP_084426450.1\|2302946_2303888_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.03217e-82
NZ_CP042914.1\|WP_068133349.1\|2313438_2314923_+\|sulfatase	gnl\|CDD\|293750	cd16026, GALNS_like, galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS). Lysosomal galactosamine-6-sulfatase removes sulfate groups from a terminal N-acetylgalactosamine-6-sulfate (or galactose-6-sulfate) in mucopolysaccharides such as keratan sulfate and chondroitin-6-sulfate. Defects in GALNS lead to accumulation of substrates, resulting in the development of the lysosomal storage disease mucopolysaccharidosis IV A.	0
NZ_CP042914.1\|WP_068133358.1\|2319346_2319598_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	2.04993e-17
NZ_CP042914.1\|WP_068133335.1\|2306263_2306746_+\|hypothetical-protein	gnl\|CDD\|227902	COG5615, COG5615, Predicted integral membrane protein [Function unknown].	0.00313725
NZ_CP042914.1\|WP_068133309.1\|2294401_2297104_+\|glucosidase	gnl\|CDD\|367389	pfam03200, Glyco_hydro_63, Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.	3.16767e-09
NZ_CP042914.1\|WP_068133445.1\|2318870_2319338_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	1.6863e-44
NZ_CP042914.1\|WP_068133439.1\|2312938_2313286_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	3.51881e-45
NZ_CP042914.1\|WP_068133340.1\|2307951_2310267_+\|VWA-domain-containing-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	3.49215e-60
NZ_CP042914.1\|WP_068133312.1\|2297297_2298956_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	1.26485e-10
NZ_CP042914.1\|WP_068133364.1\|2320701_2321235_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.08655e-70
NZ_CP042914.1\|WP_068133329.1\|2302508_2302886_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	2.00558e-31
NZ_CP042914.1\|WP_068133338.1\|2306751_2307669_+\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	5.95213e-58
NZ_CP042914.1\|WP_068133315.1\|2299115_2299544_+\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	1.82297e-23
NZ_CP042914.1\|WP_068133355.1\|2317118_2317544_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	4.93854e-12

>NZ_CP042914.1|WP_068133342.1|2310411_2311254_+|alpha/beta-hydrolase
MAAPLYPFHSWTDALHLAGWRMQRNAQDAWRIQDELDRTVWSGPADEADAAWQQLVDAHQLTWAPGSFLITLHGLWHHRRMMKRMVQRLPESCGTNRIRFEYASCCHSIREHAAALDRVLAALPAGSRCDFVAHSMGNLVTRGWFGMRRDGQATADVVPSRMVMLAPPNQGSDLARRLSKLQLFHRLAGTAGQEVGLEWESIEPDLPAPDIPFGVIAARVPRWMINPLLGGESDWIVRVRETPLAGAKERITMSALHATMMRSPKVIAATERFLTTGTFS
>NZ_CP042914.1|WP_068133340.1|2307951_2310267_+|VWA-domain-containing-protein
MALLVGAGCLIFSAGSALAQGFLLPENPDSPIWRRPPNRQPVQTYRVDKIEVDAAIKDQVATVQVSQTFRNTCSQTLQVRFVFPMPYDGAVDQMTFLVDGDELPGKLMDADKARKQFADYVRRMQDPALVQWIGPGVFQTQVFPVPAGAERTVSLRYTQLLQRNGSMTDWLLPLKPAASGGTPVGQINVSARIRSSVPLTNVYSPTHEVTVKKPNSQTATIKLSQSGKRNLGDMRVMWDVGEDPVPMSLVGYRGERDEDGYFMLLLQPDLPEPSAKDRRRGKHVILVLDKSGSMKREKIEQARNAASYVLDRLKPRDQFELITYDNGVEAYAESMTDADEDTIEDAKDYVSSILAGGGTNIHEALLTALHTASDVDGSPYIVFLTDGRPTVGTVEVAKIVSAAKKANDSNARLLSLGVGHDVNSHLLDKLSANLQGQSIYVSPGEAIDDHVKRLYDRIGAPALTDAKLTITVEGKKRSVRQLYPQDMVDLFSGDQVVVVGRYRHAGDVRIELTGKLGDERKTYTYRSHLPGVSESHRRDAFVERLWAVRRIGSIIDDIDLNGEKPELVDELIALSKKHGVLTPYTAFLADEDVGLNDRRLQQANTRRNLGRLHAESGADAFRQRAAKSLYKTAPRAGAAEEAIADFAMSESSAAGAGGYGRGSIASSAPAAPGLAGGQPAQPAPAGGSAPTSRRDKLRQIEGKTFYSRGGVLIDAEASDEQVAAAEAIEQFSDRYFKLLEELDDKQKAWLAQDDEILFVVKGKAYKIVKAK
>NZ_CP042914.1|WP_068133338.1|2306751_2307669_+|serine/threonine-protein-phosphatase
MSVKIDCSGATDTGRVRKNNQDQFLIAELKKSMLVQACSLPLEQQSRLFGNAQGHLLLVADGMGGHAAGERASELAVDYMIQRLLNSVHWFFRLEDDVEKDFLLHLQNLLQEAHQRILDDGVVNVENRGMGTTLTMAYAIWPRLYVVHAGDTRCYLIRDGQAECMTRDHTLARQLVESGGMRPEEEAESRWSNVLWNVLGGHGDGDITVEVSKATLQVGDAIMLCSDGLYRYLDEPAIADIVSRASSAAAACDELIRLANLRGGEDNITAVVGRYPRPLEASDLDDDFVAAPRDPSDEDTKPQGG
>NZ_CP042914.1|WP_068133335.1|2306263_2306746_+|hypothetical-protein
MEGQQWLDWVSRFTHVATAITLIGGSVFTAFVLVPAAQKLDSSSHDTLAEAVAARWKRFVHIGILLFLISGFYNYIRAIDSHRGDGLYHALLGTKMLLALVVFFLASALVGRSAKLEGIRRGRAKWLRVLILLATIIVAISGFVKVRGGPDSPPSPTITE
>NZ_CP042914.1|WP_148080161.1|2303887_2306170_+|hypothetical-protein
MSASMLSKRLVPMLHLVWKEIQQVRALAVALMVLGALLCLLLWLWGAHSYDVVLVLFPNLFALGAPVLMIGHEEETGTLAWSRTLPIGWLSALISKWLVAVAGLAIAWAISLFFYQFTPSARQYVSSLDLMGAPSYMLSFSLSLLACGFMLSWWLRKPVFTLFVLVALMAAVYMGCFALAEQLWGRRHAADGGVVPLLAVAAAVMAVASVFFARRTWTRPWGRKSTRVARSMEVVVRPYRPTEVVPVVPPGARFALLWQHARQTLPIALPAFVVGTLLALSPLLADRLNPLFVLVPVVAALLLGVSTFLTDNTDGRHRFLAERGFSAWTVWWTRQLIPLAMTGIILVLVIITWSSHSTTSHRQLGEPFVGMLVAMCAAFVSGQFTAMVVQRPTLALLCSPLTFIAMWFATLPLIHIYSGFRFGMWAMLCLGLLVMWLATLRLCRRWLDDWRTVGFYSRAIGWISAAALVAFVGLIGQRWITTPAAMPQWKKQVLATAAALPDGAPQLLFASSAWSSRTPSAIDEMCEAINGPDGAVFSDQTANHLDRYFELLSSLSMYAADEPQEIDAAERRRTEQYAELIEASFNTLERYRDSGRLRYSDFADGIELELVSELSKQQVRDWLGQQRWETFVERLATPEQRREARRRALLLSYQEFARPRESFAGSGDVGNRLLGGYWVMGDQRHIFAWERFRTRRLVDRAVRISLEQLDQPQRMGFGGPRWEAWWDVWEDPHRNAVAEPTRHWHSALDQTVLDLKAQLR
>NZ_CP042914.1|WP_084426450.1|2302946_2303888_+|ABC-transporter-ATP-binding-protein
MSAVVSVTGVQKHFRGCDALQGVDLQIPPGVVFALLGENGAGKTTLIRILTGFLHADAGEARVLGMDCVSQSLEIRRQVGYVSDAPALYDWMTPERIGWFTSAFYPAGFQQRYEDLIRQFEVPVGRKIKHLSKGQRAKVSLALAVAHEPELLILDEPTSGLDPLVRRQFLESMVDRAATGRTVLLSSHQIDEVERVADWVAIMRSGVIVLAKPLSEIKETTQQVIVSLDDPLVEVPWPRGNVLQHARSGRQLRMVVQGTDAESLAELRGAVGVQHVETRVPSLEDVFVACTRGESPAAEQQSPETDAVVAEAE
>NZ_CP042914.1|WP_068133329.1|2302508_2302886_+|GntR-family-transcriptional-regulator
MFFFIDHSNGVPIYEQLVRQVKYAVADGVLSSGQMIPSVRQLAQQLAINPNTIARAYGQLQTEQVLEPLRGRGLVVRKDARSRCVKARSTLLAARLRSALEECLQSGLSREELTELFQTELAALP
>NZ_CP042914.1|WP_068133315.1|2299115_2299544_+|DUF393-domain-containing-protein
MNSPPTLPDPDRLPQADVVIFDGQCRFCRTQVQRLRWLDGRGRRLAFLSLHDPRVAQRYPELTHEQMMEQMYVIERDGTAHGGSAAVRYLSRQLPWLWAAMPILHLPGTAGLWRWLYRQVAKRRYRLAGKACEGDACSVHLR
>NZ_CP042914.1|WP_068133312.1|2297297_2298956_-|hypothetical-protein
MNQIQAQVSRARRRLMLQQFGRVASWSLFACLMIALIAFAVPKIWALSLDISVWNLAWLIGSLSVGLLAALVWTLWRGPSPTEAATEIDRRFSLRERLSSSLSMSEEDRESTAGQALVADAERRAAQLAIGDRFQLQPARLGLLPLVPIAMLAILIFIPNATRENEADASATLAARQEAEQVKKSAQILKRKIQAARDQAKEKGLTDAEDLFNKLEKKVDKVIKRENVDRKQAMIALNDLKKSLQERRQKLGTPDQMRKSLSNLSEMEKGPADRVAKSLQQGDFGEAQKAIKDLAQKMRDGKLSEADKKQLQDQIQQMKDKIEEAAKKHEQAKQDLQREIDKAKSEGRQADADKLQEKLNKMQAQQDQIDRMKQMAEGLGEASEAMKNGDSEAAAEAMESIADELGEMQQEMDELEELDQAMDELSQAKDQMRCQQCQGEGCQNCQGMGNQFGQQPGNGNGLGRGQGQGERPEAEDDTNTYETQVRGTPQKGRGIIAGVAGGQNKRGVTRAELQETVRGALSEESDPVENQSLPRTEREHAQQYLDLLREGK
>NZ_CP042914.1|WP_068133309.1|2294401_2297104_+|glucosidase
MSKFASIEDRRLHESQQREQNWQRWGPYLSERQWGTVREDYSSDGNSWAYFPHDHARSRAYRWGEDGLLGLCDRECRLCFSLALWNGRDAILKERLFGLTGPEGNHGEDVKECYYYLDSSPTHSYMRGLYKYPQARFPYLPLTDVNRQRSREEPEYELTDTGVFDEQRYFDVQLEYSKASPDDILVRIRITNRGPQAAVLHALPQFWFRNTWTWHCTDEGCTLPPKLWLHGDTVLSDHESLGAFSFAADVGPEGNSPTWLFTDNETNTDRHPGLPREGEYSKDAFHRYVVLGQTQAVNPRQRGTKSAAYYLLMLQPGESQELRCRISPTELTQQPGWQPFGQNFAQTFGQRQTDCDEFYKTRIPASLSEDRRNIMRQAYAGLLWSKQFYHYVVRSWLEGDPAGPTPPAGRGEIRNGEWQHLFNRDILVMPDTWEYPWYAAWDSAFHMIPMARLDTHFAKEQLLLFLREWYMHPNGQIPAYEWQLSDVNPPVHAWAVWEVYKATGPPGQRDKLFLARAFQKLVINFTWWVNRKDPRGRNIFAGGFLGLDNIGVFDRSSQLQDGLLEQADGTAWMAFYCGAMLNIAMELADGNPAYGDMASKFFEHYVAIAEAMNCLDGNGLWDETDGFYYDHLYLAGQGTPMRIRSLVGLIPLLTGVILDDAATDKLPGFKKRMQWFLENRGEMSRHMTYLDHESTEGPVPGRRLLAIPSEDRFRRLLSVMLDESEFLSPHGIRSLSAAHRDNPFRFELQGQVEEVRYVPGESDSWMFGGNSNWRGPVWFPMNFLLIQALRRYHSFYGESFLVECPTGSGNQMTLLEVSHELERRLISIFEQTPTGRPAHGTSFSAYTDDPHWKDLVLFYEYFHGDNGSGLGASHQTGWTALVATMMQSQAQAVPAKSLEK
>NZ_CP042914.1|WP_068133344.1|2311460_2312795_-|MBL-fold-metallo-hydrolase
MKLIHHGAHQGVTGSCHQLKMDNGSSYLVDCGLFQGDDAKRNPNPEIKFSLSGIEALLLTHVHIDHCGRIPYLLSAGFNKPIYCSHPTAKLLPLVMEDAIRIGFTRNRRMIDKFLKTVGKLLRPLDYGEWHAIEAGGQIRLRPAGHVLGSTVFEVQTADGATVVFSGDIGSRNAPLLNEVTSPPKADLLVLESTYGDRFHDAPDDRTKQLEAILCHTLADKGVTIIPAFSLGRTQALLFEMNSIFEHMQSQQGCSLMKKVDVIVDSPLASRFTQIYKDLQPFWGQEAQAVLRIDDQPLVFDNLTTVGDHAEHMDTLNYLAEHKLPAIVIAGSGMCTGGRVVNYLKRFLQEPTADVVFVGYQAHGTPGHHIQQQRDWVRLDGKKFQIHAKVHQLSGYSAHGDQADLLRFVEQFESRPQHIRLVHGEYHAKKVLREQLSRRGYEVD
>NZ_CP042914.1|WP_068133439.1|2312938_2313286_+|P-II-family-nitrogen-regulator
MKLIIAIIQPEKLEAVKQALTEVDVVRLTVMDCQGFGRQKGQTGIYRGHEFSFNLLRKVQLQIAVNEDFVSPTVDAILGAGRSGDQGAIGDGKIFVLPMDDCIRIRTGERGEEAI
>NZ_CP042914.1|WP_068133349.1|2313438_2314923_+|sulfatase
MLLSRLLALLLLGVATMLSLSTAVADDAPPNVVVIFIDDMGYGDIGPFGAEGYTTPNLDQMAREGRRFTDFVVSSAVCSASRSALLTGCYHVRVGFSGALGPNAKIGISDQETTLAEICKSQGYASACFGKWHLGHHPRFLPPAHGFDQYYGIPYSNDMWPLHPEDVARIAHNPNAKNRWPPLPMIEGTRVVNADVQPADQEQMTRAFTERATQFIRQHADEPFFVYLPHPMVHVPLYVSEAFKGKSGAGLFGDAVMELDWSVGQILQTLKDVGVDENTLVIFTSDNGPWLSYGSHAGSAGPFREGKGTMFEGGYREPTIMRWPGKIPAGTSCDELASTIDILPTVAKLIGAELPSHKIDGQDIRPLMFGQPDAQSPHEAFACYYGGGQLQAVRDRQYKLHFPHSYRTLDGRPGGSDGAPTRYSQAKISQVLYDLKADPGETTDVAAQYPEVVARLTAAGEALRADLGDKLQKRRGAGVRAVGKLTPQDKRLEW
>NZ_CP042914.1|WP_068133352.1|2315163_2317113_-|hypothetical-protein
MNDIPELLRIGPRIAVLPVIHGSGDCALTVRRWMLEHDFDCIAVPLPESFREGIEEAVLQLPKPSIVIQPTTPRFDLDERSAEQPWEPTEWSQDAPWQDGPQAEEEEEDEGEGEPYSFVPIDPCQPVITAIRSALGEHIPRAYIDMETSPFQPQSAIMPDPYALKHVSPERFAAAILPSIPRPPDRQTCERLNYMAWRLQELEQRFERILLVCNLLHWPWIRQAFTETRQSPSEGDAVEPPQIYDVDPRTLTFLFGELPFITGLYERARAELSDDENLSIDGLKELFLASRDSYRRDFGRRARPVTPLLLSQCIKYIRNLSLIERRMTPDLYTIVTATKQVLGDQFALHVVERACEYPYDVLTDSNSVALGVEQCRFPDGEVRELVSRLPGPATMWKTVELKRRPTRKETQRWQYSWNPFRQCSYPPEDVQIENFRTRVFDRAQAIIGNDLARTEKFTTSVKDGIDIRDTLRHWYDKQIYVRVTPPSGGKLDACVMLFDSPADPRDYPWRTTWFAEHDAESTMAFYATDFREEMVGPGIGMSVYGGAMFLFPPLVIPDIWTDRRLDFVDSVEERLLAATCLHARGRQIALVSSLPPGAGWRRLARHFKKQFVHVPLASFSSVEVQQLRMAHVLNGTEIRSYAADFIRKA
>NZ_CP042914.1|WP_068133355.1|2317118_2317544_-|YkgJ-family-cysteine-cluster-protein
MAGRSAKPWYHEGLRFECSGCGDCCSGEPGFVWVEPEEIAAMAEKMEMPVPEFEDKFVREESEGKSLIEYPDGDCIFLEPETRKCIVYEARPVQCRTWPFWNSNLTSKRAWKETCDVCPGSGVGKLYSLEQIEARRKEKDV
>NZ_CP042914.1|WP_084426453.1|2317569_2318805_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLQRGHGPGAHATTYITTPRTPTITTPRHYLDNAATSWPKPPAVYEAVMQQMQAVGAAAGRGAYHDAVTSADVVQQTRAAIARLISAPSASCIAMAANGTAALNLAIQGIWPTPPPVAAHVVTTAAEHNSVLRPLQAMADRGGVELQTVPCDASGTVRAEQVLAAVRDDTQLVAVGHASNVTAAVQPIAAIGEALVDHPALLLCDAAQTFGYLPIDVQAWHVDLLASPGHKGGLGPLGTGFLYAAPHVQPRLTPSLWGGTGGNSDLLTMPDAFPQRLEAGNLNVPAIAGWLAGLRWLEQQPDPSQHLRVLSRRLDQGLEDLPGVRCLGVGHPLPLRSFVVAGLTPSDVGAILDAEFGVQVRTGLHCAALIHHSLDTQGEGTVRISAGHLTNEDDVAAALDAVARIAAEIHS
>NZ_CP042914.1|WP_068133445.1|2318870_2319338_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MPTPDAPQPPVPTPQISVRLVDQPISLDELWGQIADEDCGAQLVFVGRTRRHTQSDETVAVTTELSYEAFRPMAVKELEKLLAEAAEKWPLRHLLGVHRLGDVPVGQASVAIALASPHRDACMQAMPWIMDQLKTRVPVWKQERFEDGSSEWIHP
>NZ_CP042914.1|WP_068133358.1|2319346_2319598_-|MoaD/ThiS-family-protein
MHPQRTIRLFAGARQAVGQDSLSVAVADDASAEQILAAIAAAAPQLSGLLPACRLVADQSYLEPQQTVAPGAELALIPPVSGG
>NZ_CP042914.1|WP_068133361.1|2319634_2320639_-|ketol-acid-reductoisomerase
MAATIYYEADADLSHLKGKTIAILGYGSQGHAQAQNLRDSGCNVIIGQRPGSANYDLAKDHGFEPMSIADAVKAADVINILLPDEVQGPVYQEAIKDNLSPGNILMCSHGFNLHFGQIEPPQGVDTLLVAPKGPGHLVRSEFEKGGGVPSLIALGDGASEATKQIGLAYAKGIGGTRGGVIETTIAEETETDLFGEQVVLCGGVSELVKAGFQTLVDAGYQPEMAYFECMHELKLIVDLFYEGGLSYMRYSISNTAEYGDYSSGPRIVTDETRAEMKKILEEIQNGTFARNWILENRAGTPGFKATRRRERALQIEEVGRNLRRMMTWIDEKEV
>NZ_CP042914.1|WP_068133364.1|2320701_2321235_-|acetolactate-synthase-small-subunit
MRHVVSALVQNVPGVLAHISGMLASRGYNIDSLAVGETEHHDLSRMTFVVVGGKDVLEQVRKQLEKIVTVVHVEDVSSRDYVERDLILLKVKAPAGNVRSEIRELVDIFRGRIVDVGPEEIMIEISGRENKIEAFVDRMRAYGITELVRTGRIAMVRSVAEAEPQELAEDAAAQAER

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Crispr_ID: NZ_CP042914_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_9

2597306-2597418

Orphan

Consensus_repeat	Method
GCCGCCCACGCTCTGGCGAGCGTAGCTACGTTGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_9

>merge|NZ_CP042914|9|2597306-2597418|CRISPRCasFinder
GCCGCCCACGCTCTGGCGAGCGTAGCTACGTTGCTCGTAGCTACCGTCGCCAGACGGTGGGCAATGCGTTTTGGTTCTGCCGTCCACGCTCTGGCGAGCGTAGCTACGTTGCT

>NZ_CP042914|9|9|2597306-2597418|CRISPRCasFinder
GCCGCCCACGCTCTGGCGAGCGTAGCTACGTTGCT	CGTAGCTACCGTCGCCAGACGGTGGGCAATGCGTTTTGGTTCT
GCCGTCCACGCTCTGGCGAGCGTAGCTACGTTGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068139494.1\|2603855_2607551_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143443
NZ_CP042914.1\|WP_068139450.1\|2582817_2583552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068139498.1\|2608156_2609143_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|214621
NZ_CP042914.1\|WP_084427504.1\|2592255_2592633_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|226720
NZ_CP042914.1\|WP_068139471.1\|2596908_2597241_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042914.1\|WP_084427502.1\|2583626_2586932_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP042914.1\|WP_068139466.1\|2593687_2595154_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP042914.1\|WP_068139555.1\|2592659_2593688_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP042914.1\|WP_068139483.1\|2601221_2601713_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236275
NZ_CP042914.1\|WP_068139455.1\|2587345_2588014_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NZ_CP042914.1\|WP_068139475.1\|2597444_2600105_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP042914.1\|WP_068139458.1\|2588308_2590396_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_CP042914.1\|WP_068139461.1\|2590726_2592226_+\|trigger-factor	unknown	unknown	gnl\|CDD\|272913
NZ_CP042914.1\|WP_068139486.1\|2602330_2602906_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP042914.1\|WP_084427506.1\|2609238_2609679_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP042914.1\|WP_068139469.1\|2595310_2596912_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223154
NZ_CP042914.1\|WP_068139480.1\|2600617_2601157_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP042914.1\|WP_068139489.1\|2602942_2603569_-\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
NZ_CP042914.1\|WP_068139496.1\|2607695_2608133_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP042914.1\|WP_068139558.1\|2601800_2602229_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|275385

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068139494.1\|2603855_2607551_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_CP042914.1\|WP_068139498.1\|2608156_2609143_-\|VWA-domain-containing-protein	gnl\|CDD\|214621	smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.	1.85833e-23
NZ_CP042914.1\|WP_084427504.1\|2592255_2592633_+\|DoxX-family-protein	gnl\|CDD\|226720	COG4270, COG4270, Predicted membrane protein [Function unknown].	3.23369e-25
NZ_CP042914.1\|WP_068139471.1\|2596908_2597241_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.99343e-08
NZ_CP042914.1\|WP_084427502.1\|2583626_2586932_-\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	5.12968e-24
NZ_CP042914.1\|WP_068139466.1\|2593687_2595154_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP042914.1\|WP_068139555.1\|2592659_2593688_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	4.92363e-98
NZ_CP042914.1\|WP_068139483.1\|2601221_2601713_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236275	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.	7.01848e-47
NZ_CP042914.1\|WP_068139455.1\|2587345_2588014_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.8595e-29
NZ_CP042914.1\|WP_068139475.1\|2597444_2600105_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP042914.1\|WP_068139458.1\|2588308_2590396_+\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	9.02825e-10
NZ_CP042914.1\|WP_068139461.1\|2590726_2592226_+\|trigger-factor	gnl\|CDD\|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	5.3144e-77
NZ_CP042914.1\|WP_068139486.1\|2602330_2602906_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.58121e-89
NZ_CP042914.1\|WP_084427506.1\|2609238_2609679_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	2.20942e-10
NZ_CP042914.1\|WP_068139469.1\|2595310_2596912_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223154	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism].	7.68385e-43
NZ_CP042914.1\|WP_068139480.1\|2600617_2601157_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	1.79615e-50
NZ_CP042914.1\|WP_068139489.1\|2602942_2603569_-\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	1.89648e-46
NZ_CP042914.1\|WP_068139496.1\|2607695_2608133_-\|pilus-assembly-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	1.21409e-11
NZ_CP042914.1\|WP_068139558.1\|2601800_2602229_-\|30S-ribosomal-protein-S6	gnl\|CDD\|275385	cd00473, bS6, Bacterial ribosomal protein S6. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	2.49849e-22

>NZ_CP042914.1|WP_068139471.1|2596908_2597241_-|tetratricopeptide-repeat-protein
MSDIHAAYSEVEKLIDAEQYEQAIDGLKKIVEQDESYVLAHLALARVYTKTGQHAEAIAHGEKACELEPNDAFNFTALSVTYQRAWAGTQEQRYIQLAEDAMAKARMMEG
>NZ_CP042914.1|WP_068139469.1|2595310_2596912_+|aspartate-aminotransferase-family-protein
MDREKYDALVDTFFKWDQKAIVSIFEELLSAAEAEDGHRALRPMSQNYETAQANPEIHILPGNLKDARDAIFPYFWGTDSWNSPLHLENVRGPANHASLIGAVACLLKNPNLCTDRYSQRSNELEVKAITALANLIFYHTDDPWGVFTIGGTISNLYGAKIGIEKVIPGAMQKGLGGQRVVGICSQASHYSNQTVAGWVGIGTEQLESIPTDQDLAMRTDRLAERIESLYREGTKVAYVVATFGTTDGFGLDDIQAIREIIDRLASQYDQPTPQLHVDAAVGWALTFLTEYSGQRNTLEFSDELLGIVRRVQQHCAGLQYADSVTIDFHKLGRGHYPSSAFIVNRRADLKFLARSVSDTPYFAEADARRDPALFTLECSRPAIGPYSVMASLNAIGLEGWRMLIARSLELAEKLKQGLEQLDYCRVLNRNTPGPSVNWWVLPKGRNAEEIFQQLVAGELSEDQRNRYFSEIRRLLDKREKMMDPTLDARLGLTTDYGFRPGGVEVPAWKAVFFNPATDDAIVERIIYGLEELT
>NZ_CP042914.1|WP_068139466.1|2593687_2595154_-|cytochrome-ubiquinol-oxidase-subunit-I
MDVELLSRLQFAGTIMFHYLFPPLSIGLGLQLFLCELAYNRTKEPAWEAAARFWTRVFAVNFGMGVATGIVMEFEFGTNWAAYSRFVGDVFGSALAAEGIFAFFLESGFLAVLVFGWDRVSPKMHLFSTAMVFLGSVFSAVWIVVANSWQQTPAGYHIVWHDVQGQREPRAEVTDFWQMVFNPSSVDRLTHTLLGALVLGAFFVASVSAYYLYSNRHHDVARRCLRISLPSSLLLTLLAALSGHDSAQKLVHTQPAKLAAMEAHFHSDDGPTGLYLFGWPDSENQTVHGGVQVPRLLSAMVYGDLHTPVPGLDQIPPENRPPVWLPFQTFHLMVGIGTALIGIAAIGCWYWWRGTLAQKRWLLWLLMLSPVLAMTANQAGWITAEVGRQPWIVHPSVQDGVAMMGLRTSEGLSESVTAQQVLSSIIMFGVIYSLLFAVWIYVLNAKIKHGPESVEELREHKRQHHESLLEKISHSSKSHGGSLLEDEK
>NZ_CP042914.1|WP_068139555.1|2592659_2593688_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSYDTLTLIWFLLLGILICGYAILDGFDLGVGILHLFVARDDTQRRLVMNSIGPLWDGNEVWLVTFGGALFAAFPVAYATVFSSFYEAFHLLLLCLIGRAVSLEFRSKVYSPRWRKLWDFSFFLSSLTAALLLGVAAGNILRGMQLGPNHHYEGSLLSQLHWYPLLVGGLTVTLFALHGAIYLYLKTEADLQSQVRRLIMPLFYCFAGLYVIVTALTWQQAPHALDSLQQFPWLWVVPVLNVLAVMNIPRAMHLGRPGYAFFTSTMVIVAFACLFSVAIFPNLMRSTIDPAYSITLETARSSKLCLEIMLAFAVIGMPCVISYTVVVYWIFHGKVKLDASSY
>NZ_CP042914.1|WP_084427504.1|2592255_2592633_+|DoxX-family-protein
MITGGLFIAAGISQLVRPAAYLSVVPPYLPFPLALIYGTGVLKALGGLGLLVPRTRRPVGWTLVLLLVAVFPANVHMALNPQQFGDVPPALLIARLPLQLVFIAWVYWLAIRNRGLTPRRSAASR
>NZ_CP042914.1|WP_068139461.1|2590726_2592226_+|trigger-factor
MSTTDLPDGTPSTEETAVPLKLDMKVESPQACLRHVVVTIPREEIERYLKKEYDELVPEAQVPGFRAGRAPRKLVEKQFKDRVEDRVKGALLMDSLSQITDDAEFSAISEPEFDYESIDLPEDGDFRFEFSVEVRPEFETPEIKGLKLNRPVEEISEDDVTAALDGLLRRYGSDEATDEPAQLDDKLLITATFKQDGRVLSEMDEERVDLKPALTFSDSRCDSFGELMVGVKEGESRTGKVVIGEGVDDEEMRGKEVDATFNVVEVVRYTKPELTPQFLLELGDFESQDELRDFVRSSLERQAEFRQQQALRKQVTELLAGSADFDLPPELVKRQTRRELERKILEFRRSGFSEDQIRSFVNAIRQNAQDSTEAALREHFILEQIAEEQEIEADESDYDEEIELIAEQSDQPTRRVRARLEKSGQMDALRNQIIERKVIELVTEQAEITEEAVSRDDQGSDNEFAIYHNVIRAKDASAIPEAKYDDSAAPDADAAKEKD
>NZ_CP042914.1|WP_068139458.1|2588308_2590396_+|VWA-domain-containing-protein
MSIDSIPSSGTIPTSVVVPDQEELMSMGEEYEDDEYYEEEDEGWFNDESVAFVASLLTHMAILLALALVPVLVDEKPPAVVLVSPPPEYERETMEVIEDLAYSEIPQTKIGANATAQSEMAEASAEMFAEVAEIPQPVDVRTSEIATININEMFVQAVAPVDRLKEQKGKTGVGALGASGAVDRLTWEILQSMEERPTLVVWLFDKSGSLHRQRREIRDRFDRIYEELQIVEKSGSEAFKRDNPHDHQLLTSIIGFGKSVELLTEEPTADLQVIKDTVDNIEVDSSGVEQVFSAVYLAAKEYKSMRRHRVGFGAQRNVMLVVVTDERGDDYQTGLEPTVDICRQYGMPVYVIGVPAPFGRDTTYVKYVDPDPKYDQSPQWAEVDQGPETLMPERVKIGFTGNYGEEPVMDSGFGPYALTRLCYETGGIYFTVHPNRNVNRRVRGKEIEAFSANLEYFFDPVKMAPYRPDYVSPGDYMRMVKESPMRQALINAAKMPGVEGLEKPQTRFVKRSEAGFVGDLSAAQQDAAKLEPRLNAMANVLLLGESARDDETSPRWKAGYDLALGRVLALKVRTETYNAMLAKAKRGITFEDEKNNTWQLEPAAEISVGSKWEREAKKATELLERVVEEHDGTPWAVLAREELATPIGWKWTEEYTDLNPPRPQNNNNNNNNNNTPRDDKKRMLKKAPKRPLPKL
>NZ_CP042914.1|WP_068139455.1|2587345_2588014_-|serine/threonine-protein-phosphatase
MPGRTIAIGDIHGCRVALETLLDAITPSSEDTIITLGDYVDRGPDSRGVIERLISLSQTCHLVPLCGNHEEMMLSVLGGQTQYTSWLRYGGVDTLDSYGFCGDLDVIPESHHQFFDSLRDYHETPTHLFTHAAYDPGLPLDQQSTQMLRWHSLRDGVPDPHTSGKVAVVGHTANKDGEILDLGHLVCIDTYCYGGGWLTALDVDSGQLWKANDAGVLGSPAG
>NZ_CP042914.1|WP_084427502.1|2583626_2586932_-|hypothetical-protein
MRGIAVVSVAVSFAAVLACVVYSEGRSFAKEDSKSASVAVAVADVPDVGYPTFLSPHSKPIVICQGNVFVANTPADTVDVIDVATRQVIARIPVGIDPVSLAVRPDQQELWVSNHISDSVSVIDTNSDSSTFLRVIATVQAIDEATKSTRFDEPVGIAFASNAKAYIALSSENTIAVVDVATHEVVKRLKIAAQDPRAISVQGNRLYVIPFESNNQTQLSGGRKPFDGDLVTFDAWEHSVLHNNVLSLGHVVDIVKHPEVPDRDLFVFDTDTDELIDTVDSLGTLLYGMAVDSEGTVFIAQTDARNDANGRSGTKKHGLAELENRAFLNRITRVQFASNEAQPSFFDLEPLPPLHPKPEDALATPFAIAVSPDDQVLVASAAASDKVFTLDAHNGDVLGSVDVGAVPRGIALENEADGSLSQAWVYNAVSNSVSLVDLRDTSNPSVVSTLDLFDPTHPTVKRGRMAFESASASTTATFSCASCHPDGHTDQLLWVLKTPIVSGGDQIMPRSTMPIRGLRDTAPFHWDGVPGDPYGGNNSASIHGSVPPNSDAHDPTSSTRHLIDGGIAGTMSLVGDKQMNDEGKAGALTSAQRDDMATFLLSVPYPPSQRRAYTNVVSQRALDGFKLFHIDGDHDEKLRPNVCGNCHRMPFLVSTNTPGTGMDAPTWRGAYDRFLILPQGRLNIIEFDFYRRVAEQGQDERSIWQFSWAGRSRFDPVWEMVLEGSTGFSGSFARQVTLNQNTVNDPVSIDLLNALELASREQAVVLDGQAVLIGKDSPQPISLSYDGTHYVSRQKPNMVFSRDELIEGAAQGKFVGTFTARHGVRADVEHPQPALWTRGPIEQQRGRQQFPILYQGSHRMVISGRHIQPDANVIVDGRRVPATLQIEDEQLEIHFPTLPKEGMHLLQVQNTAGMFSNDFIFHVVADADAAVALQTEIDEPHIGLQGLVADAIADNDLARLERLIDRGADLNDRQTETGSTPLVTAALHGNLPIARYLIQQGADVDATNRDGNAPLHIAAFLCHTEVVKLLLQHGASTETRSNRGEQPMDVVSSPWNESLEDVYRFVGNLVDIEIDLQRMQQDRPMIAELLRDHQQATSTDR
>NZ_CP042914.1|WP_068139450.1|2582817_2583552_-|hypothetical-protein
MLKTIHFFGVSLFLACLPTACDAQDFETIERRLGEIVADGELSLEQAQVMLHALRVVTHHRRNDDHPMREMLEQFERYGVDETKADHARHALEQQGIHGENLHHAMGALLRIVQRMQASDHDFDMPEAMERHLHEELSLSAKQIDFLIGLANRVAHAGSSNEHREANAEEILQWIESVRTKLKQAIESNKLSGQDASRKWQFIKQYQLAPKLKAATERGELDEEHAKRIWHEIEAYEMTDRKAD
>NZ_CP042914.1|WP_068139475.1|2597444_2600105_-|pyruvate,-phosphate-dikinase
MAKKASPSKKMVYYFGKTKTEGRGKSKALLGGKGLNLAEMTAIGLPVPPGFTITTEVCDGYYKNKQKLPAGLMDEIRKAVSVMEKELKKKFGDDANPLLVSVRSGAAVSMPGMMNTILNLGLNDEATEGLAKATNNPRFAYDAYRRLINMFGDVVMGMEHHTFEAAFDKIKKKYKVSEDTDVPAEGLKELCDAYKKVFEKHAGEPFPQDPYKQLQLAIEAVFGSWNTPRAVSYRQIENIRGLLGTAVNVQSMVYGNMGEDSGTGVAFTRNPNTGENKFFGEFLINAQGEDVVAGIRTPQPVAEMPKWNKAVHKQLLEIKQTLESHYKEMQDIEFTIEKGTLFMLQTRTGKRTGVAAVKIACDMVKEKLITQKEAVLRVPANDLTQLLLPSFKTTARNAADVLARGLPASPGAAVGKLSFTAADAKARAAEGEKVILVRKETSPEDVDGMHAAVGILTSTGGMTSHAAVVARGWGKCCVAGAGDVKINEKTKKITVNGRTFGAKDVLSLDGTTGEVMAGEVETQEPTLSGDFAKLMGWADQYRRLKVRTNADSPADSKRARDFGAEGIGLCRTEHMFFEGDRITHMRAMILAETEKDRRAALKKLLPFQRKDFEGIFKAMNGLPVTVRLLDPPLHEFLPHEDKAQKEMAQELGVKPSEVKQRTESLHESNPMLGHRGCRLSVTYPEILEMQVRAIVEAAIRCANKNIDAQPEIMIPLVGTAAELRVLRERVEAVIEEVVAQKKFEGKLNILIGTMIEIPRAALTADEVAEYADFFSFGTNDLTQMTFGYSRDDVNTFLPDYLDNDLLNVDPFQSLDTTGVGQLVEMGVTKGRSVKKKLKVGICGEHGGDPSSIDFCNQVGLDYVSCSPFRVPIARLAAAQAALNAEK
>NZ_CP042914.1|WP_068139480.1|2600617_2601157_-|50S-ribosomal-protein-L9
MPKTKNRHNNAFKPLPKGENGGIRLLLIHNIEHLGKQGDIVEVKPGYANNYLLPQGMATVATEHHKRMVEKHREKLRQLELEKLVEYRSRAAEISRQSITIEANANDEGLLYGSVGAHDIAEGLKAVGISVPQDQIRLQGPLKELGLYTVKIHLHAEVDAELKVWVVPTVSAEEQAATR
>NZ_CP042914.1|WP_068139483.1|2601221_2601713_-|single-stranded-DNA-binding-protein
MASYNRVILVGNLTRDIELRHTPGGTAVTDAGIAVNDRRKTASGEWVDEVTFVDVTLWGRTAEVASEYLGKGSPILVEGRLKLDTWEADGQKKSKLRVVCDRMQMLGGRNESGGPSSGGPSSGKSSSGGYSGGTSGGYDSPPGNREAQPTGGGQGYNDPDIPF
>NZ_CP042914.1|WP_068139558.1|2601800_2602229_-|30S-ribosomal-protein-S6
MAKNVYETLLILDSNKYARDPGGVAAALNGLVEAIDGTVLASRLWMEQRLAYPMDGHQKGTYWLLYFEAEGSRLTELDRAFTLHEGIIREMTLRIDPRLVEPMLANARGEYRAGDETEDGDAAAEGDAASSESTEPAASAAE
>NZ_CP042914.1|WP_068139486.1|2602330_2602906_-|aminoacyl-tRNA-hydrolase
MKLVIGLGNPGRRYQQTRHNVGFAVAQQLTNMVGGDTPRTRFEGELVEGSVDGTKVGLLCPMTYMNASGQSVRKAVDFYKLNATDILVVCDDLNLSLGRLRIRAKGSAGGQKGLADIIRHLGTDQFPRLRIGIDPAPPGWAVPDYVLGKFKPSELPTIEDAIQQAALAAADWVQHGTEFCMNRYNASANSN
>NZ_CP042914.1|WP_068139489.1|2602942_2603569_-|50S-ribosomal-protein-L25
MAEVLHVEKREQMGSSATARVRRNGRVPAVLYGHGQPNEHLSIARSEVDALIRHHGRAVELQGSVADTAMVNDVQWDALGMEILHLDLLRVNLKEQVEVAVSVRVHGEAPGTREGGVLIENVHEVEIRCPAGSIPEFVGLNVSDLQIDQHAVASALELPDDAELVTDPETVIAHVEVPREQVETEGGEGDSEPELIGKKEDGEDSAAE
>NZ_CP042914.1|WP_068139494.1|2603855_2607551_+|aldehyde-dehydrogenase-family-protein
MAGSSSPLSLDALLQPIRDNASDFSDDTAAAVDIAQRLLHRSRQLLTPEERAQQAELDRMITHVEDKATLVAMTDQAFRTRTPARVADQLTHILDLQGVPRFFSPLDRTLLRGFQSFGSYLPGVSIPLVKEKMRRETANVILPAEQEMLVEHLKMRHAEGVRMNVNFLGEALLGEQEARRRLKVYLDALADPDIECISVKISTIYSQLSPLARRHSVDVVADRMELLYRTAARHRYRRPDGTLTSKFVYLDMEEYRDLQLTASVLRSALDRPDLDDVRAGIALQAYVPDSYEVLEELLEWARHRVAAGAQPLTVRVVKGANMEMERVEASLGGWPQAPYTNKRDTDANYKRMLRLLMKPENSAAVNLGVASHNLFDISLALLWADRAGVLSNVQFEMLEGMANHQRRALFEAAGEMLLYAPACRKEDFINAIGYLIRRLDENTGQENFLRHTFRLQSDTPEWEQLADGFRESMQCIDSVSVSPRRTQDRNQPPAQPDVGDDWKTFLNEPDTDWCLPHNGDWAQQTLDRWQAKSGEQATEVPLMIGDGTVDGGGRNQRESCDPSRPGVVVCRYLEAQAEDIAAAVQIAADDPSGWRSTSPQHRRELLRAAAQIMRQRRGDLIGAAVADGGKTVMEADPEVSEAIDFTEFYPLTAARFQTDSEASASKELSRPRGVVAVISPWNFPIAIPCGGVVAALAAGNTVLLKPASDTVLPAYVMCQCLWDAGIPRNVLQFLPCRGSDAGNHLVSDPRVDCVILTGGTATAKSMLRTRPDLDLMAETGGKNATIVTALSDRELAIKHVLHSAFSNGGQKCSATSLLLLEQEVYEDPQFRDMLVDAVQSLRVGSAWDLSNKIGPLIRPPGDELARGMKELEPGESWLVLPEHVGDNPNLYRPGVKWNVRPGSFTHRTELFGPVLGVMSYRTLDEAVGIVNATGYGLTSGLESLDDREQELWRDTIRAGNLYINRPTTGAIVLRQPFGGMGASAFGAGLKAGGPNYVAGLMTHPRTLAVTETPPQSPPTLRSQVLASLLESVQRLVTEGMLDPKDLTTIAAVVDSIDHAVEEEFSRCCDTLQLLGQDNFRRYLPVAHLRIRLQPQDRPADVLLAAAAAASVCCRAVFSHPPEGCPKSVACLRAVMEDWGGRVELLEESDEQLAAAINEGAVDRLRILSEDYTVEDVLTACAEQFVSAIRRPVSSDGRVEALWYLREQSISHDYHRYGNLGNRTEDGRMLPG
>NZ_CP042914.1|WP_068139496.1|2607695_2608133_-|pilus-assembly-protein
MKTNSVHHRKRRGTTKPADGRRGVAAVEFVFVVTIAFVLFFAAFEFCRVAMIRHTVDNAVYEGARRGIIPGGTADEVSGTARQILATIGVNNARVTVQPATITKSSEDVTVSIRVPLDSNSFVPTNFFRGKTIERTLTMRREGTR
>NZ_CP042914.1|WP_068139498.1|2608156_2609143_-|VWA-domain-containing-protein
MLVLLAVAMVLFMVTAALAIDIARMHLARTELRTATDAAAKAAAEALSRTQDADAAIARGTEIAADNDVNGSPLLLRQGDFEFGRSEENTTTGRFVMNTAGRPLNSVRVRGERTNTSASGPIPLMFGNVFNRDFFEARQQAVATYIERDVVLVVDRSGSMRGSKFADLRSAIDEFIDTLNATPVDEQVGLASYSDRASADVALTGNLSRISDKMQELRASGLTSISRGMTAGESIISAGRSRDFVERTMIVMTDGNHNRGPEPRTVATSLAAEGVVIHTITFGRDADKPRMREVAQIGRGRHFHADNGLELRDIYREIALTLSTMITE
>NZ_CP042914.1|WP_084427506.1|2609238_2609679_-|pilus-assembly-protein
MNVPPSPSRSCLRRSAGRIAAKRRGVAAVEFAVCLPVLILLVFGAIEAASFIFLKQSLNVAAYEGCREAIRSTGSNAEAQTKAVAILDARNVRDAQVRFVSGDVAAINRGEKVVLEVSAPTRANSPLAGQFIDNRDLTARVVMVKE

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Crispr_ID: NZ_CP042914_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_10

3642583-3642741

Orphan

Consensus_repeat	Method
GGAATGCCCGGGGACAGACACCGCGCATTTCGGCACCGCGCGTTTGGCGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_10

>merge|NZ_CP042914|10|3642583-3642741|CRISPRCasFinder
GGAATGCCCGGGGACAGACACCGCGCATTTCGGCACCGCGCGTTTGGCGCTGCTGCCCACCGTCTGGCGACGGTAGCTACGATGCTTCCGCCGAATGTCCGGGGACGGAATGCCCGGGGACAGACACCGCGCATATCGGCACCGCGCGTTTGGCGCTGC

>NZ_CP042914|10|10|3642583-3642741|CRISPRCasFinder
GGAATGCCCGGGGACAGACACCGCGCATTTCGGCACCGCGCGTTTGGCGCTGC	TGCCCACCGTCTGGCGACGGTAGCTACGATGCTTCCGCCGAATGTCCGGGGAC
GGAATGCCCGGGGACAGACACCGCGCATATCGGCACCGCGCGTTTGGCGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068130749.1\|3628650_3629853_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238872
NZ_CP042914.1\|WP_068130744.1\|3632220_3634272_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP042914.1\|WP_068130708.1\|3649715_3650570_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235726
NZ_CP042914.1\|WP_068130733.1\|3637072_3638596_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080282.1\|3651760_3652480_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP042914.1\|WP_084426025.1\|3627867_3628623_+\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062
NZ_CP042914.1\|WP_068130718.1\|3647303_3647594_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130715.1\|3647687_3649220_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_068130697.1\|3652592_3652925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130752.1\|3626834_3627665_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130710.1\|3649260_3649707_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341116
NZ_CP042914.1\|WP_068130729.1\|3638777_3640157_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP042914.1\|WP_068130746.1\|3630128_3631748_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP042914.1\|WP_068130726.1\|3641419_3642553_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP042914.1\|WP_068130720.1\|3644221_3646972_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130693.1\|3653098_3655369_+\|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase	unknown	unknown	gnl\|CDD\|223732
NZ_CP042914.1\|WP_068130740.1\|3634428_3635007_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223961
NZ_CP042914.1\|WP_068130704.1\|3650668_3651613_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP042914.1\|WP_068130722.1\|3642833_3644207_-\|DUF4147-domain-containing-protein	unknown	unknown	gnl\|CDD\|225254
NZ_CP042914.1\|WP_068130737.1\|3635616_3637068_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068130749.1\|3628650_3629853_+\|hypothetical-protein	gnl\|CDD\|238872	cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.87367e-16
NZ_CP042914.1\|WP_068130744.1\|3632220_3634272_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP042914.1\|WP_068130708.1\|3649715_3650570_+\|SDR-family-oxidoreductase	gnl\|CDD\|235726	PRK06181, PRK06181, SDR family oxidoreductase.	1.36711e-94
NZ_CP042914.1\|WP_084426025.1\|3627867_3628623_+\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	5.42216e-83
NZ_CP042914.1\|WP_068130722.1\|3642833_3644207_-\|DUF4147-domain-containing-protein	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	9.18543e-99
NZ_CP042914.1\|WP_148080282.1\|3651760_3652480_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.29295e-05
NZ_CP042914.1\|WP_068130710.1\|3649260_3649707_+\|hypothetical-protein	gnl\|CDD\|341116	cd17033, DR1245-like, possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans. This family includes a possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans, a bacterium that is exceptionally resistant to the lethal effects of ionizing radiation (IR), ultraviolet light and other DNA-damaging agents. DR1245, a protein of unknown function conserved only in the Deinococcaceae, and with strong structural homology to YbjN proteins and T3SS chaperones, may display some chaperone activity towards DdrB, a protein found to be highly up-regulated following irradiation; DR1245 may also bind to other substrates.	6.97521e-17
NZ_CP042914.1\|WP_068130729.1\|3638777_3640157_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	9.17643e-12
NZ_CP042914.1\|WP_068130746.1\|3630128_3631748_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	0.00728764
NZ_CP042914.1\|WP_068130726.1\|3641419_3642553_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	4.97177e-175
NZ_CP042914.1\|WP_068130693.1\|3653098_3655369_+\|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.11214e-83
NZ_CP042914.1\|WP_068130740.1\|3634428_3635007_-\|hypothetical-protein	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	1.36165e-12
NZ_CP042914.1\|WP_068130704.1\|3650668_3651613_-\|SDR-family-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.90409e-78
NZ_CP042914.1\|WP_068130715.1\|3647687_3649220_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.62044e-66
NZ_CP042914.1\|WP_068130737.1\|3635616_3637068_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	2.54233e-179

>NZ_CP042914.1|WP_068130726.1|3641419_3642553_+|tRNA-2-thiouridine(34)-synthase-MnmA
MARIVLAMSGGVDSSAAAHLLCDAGHEVIGVFMRHGEESSEVCRTDAPQLPVVQRAGHKQGCCTASDAADARRVADRLGIAFYALNLQRDFRRIVDYFVDDYTRGRTPNPCVQCNNWIKFGRLFDYADGVEADFVATGHYAQLAADPDGGVPHLLRGIDSSKDQSYVLYGIRRDRLRRMLLPVGGYTKKRIRELAGEIGLSVADKKDSQEICFVTSGHHSDFVRARRGQDAPSTAGAFVDMEGEVVGQHSGYEAFTVGQRKGLGIALGEPHFVVRIEPETRNVVLGPRPALLRRGLVADDANWLIEPPAVGQTISCSVQIRYNSPPKPARMTIEDASASSFRVEFEQPEEGVAPGQAAVVYDGPRVLGGGWIDCSIS
>NZ_CP042914.1|WP_068130729.1|3638777_3640157_+|hypothetical-protein
MFRAFMLSITASCVLAASASAQTGVLAEMYGRGVHSYYAGNYTDAHKFLSMAIDNGTKDPRAYFFRGLVLDATGRQYEAEDDYREGSRLEVLGANSSLVNRSLSRVQGSRRLEIEAIRQQVRLEQRADLNARARARYQEAADAESRVLRNPPAAAAGAPTPPPAATVPSDAGNNPFSDDNPMAGGEPAVDAADALGDPFAEPAADAGAAAGADDANVFGDAPANDDPFGGAAAPAADPFGGDAMDAAPAAAPAADPFGGDAAPAAAPAADPFGGDAMDAAPAAAPAADPFGDAAAPAAAPAADPFGDDAMDAAPAAAPAADPFGDAAAPAAAPAADPFGDAAAPAAAPAADPFGDAAMDAAPAAAPAAAPAADPFGDAAAPAPAPASDPFGDDAMEAAPAAAPAPADTADPFADDAMDAAPAADDPFADAGEVTDAVPVPAPAAEAMDEAPAADDDPFN
>NZ_CP042914.1|WP_068130733.1|3637072_3638596_+|SGNH/GDSL-hydrolase-family-protein
MSAQARSHRSARFRKLAFRSAAVALGLVPFVLLEVALRQLPAPRELVATPPPAESQPGAVPVEAYDPDPLVDLHQLRPLFTLSDSADVWEIPTSRRNFFQPAQFARHKPANGRRIFVVGGSTVQGRPYSTETAFAELLRVQCQTAWPQFEWEIVNCGGVSYAAYRVAAIVDEVLQHEPDAVVVYTGHNEFLEARTYAVQRRIPPSLAPWLAAGCRLRIVQWPATWLRSPPPQRSVLGGEVDAVLDHPGGLELFEREPEFRTCVIDHFQLSLCRIAEACRAAEVPLVFCVPASDVLSVPPFKSAPPSAEEAPAAVAQQVQQSWRQATDPQRSSEQRVEACRQVLKLDPLHAGAAYMWGRQLWQREDYDEAATWLLVARDRDVCPLRATSEIEARVRQAAERYGTMLVDVPGSFASPQQSSICQVRRFVDHVHPRIDGGHTRIADALFQQLAASPALALPPAECGSDQRAAAVDAYLAGFDVSYFERGNQRLEGLRRWAAGRGGDPLTP
>NZ_CP042914.1|WP_068130737.1|3635616_3637068_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MADKTSTKDSSADAADGTADEPDRSEFSLLIVDNDPAHARAMTESLERVGYRCTVATSGPEGARLIERETFDVVITDMVMNDIDGMKILALARKRLPDCEVVLVTGHASVPVAVEAMQEGAFTFLEKPITPQRLRAVTEKAVEAVRLKRQNTELRQRLDERFGFEGIIYASPEMHRVIDRLKRIAPTDATVLITGESGTGKEMIAQAIHQNSPRRNKRIVELNTRAVSENLVESELFGHVKGAFTDAVGDRVGAFEYANGGSLFLDEVGDMPMSTQIKLLRVLEEHEITRVGDNKSIKVNVRLISATNRPLEDMVEDGTFRNDLYFRIKVVTVTLPPLRERRDDIVPLMDHFRKMFLKRHSKPAAHFTPDVTKRFFAYDWPGNIRQLRNFVETMVVLDNDASLGVDDLPPELHEGVPDDAPVAISSQGPASMVGKTLAEIERWAIEETLRLTGGNREKAAEQLGIGARTLYRRLDQYKKDEEQ
>NZ_CP042914.1|WP_068130740.1|3634428_3635007_-|hypothetical-protein
MLYVILLLILFLVLFALEFFIPSGGIIGLCAAAALIAAVVVGFLHSPTLGFGTLLVGLLLVPAAFGVMVRVWPKTSIGKNILGAPVVSEMRSVYQPYLNRVGIAKTDLLPSGMVEIDGRRLDAISTGVAIDKGTVIEVVSIDGGKIHVRPTDRPLPEQASQQTEPGLTLETPVDSLGLDDTLGLDDLSDPSP
>NZ_CP042914.1|WP_068130744.1|3632220_3634272_-|transketolase
MSVATDIEKAAIDTIRSLSMDAVQTANSGHPGTPMALAPVAYQIFNDAMRYDPAQPEWPNRDRFVLSCGHASMLLYSVLHLIGVKATDADGNPTDELAIKLEDIQNFRQIGSPCAGHPEYGYAAGIETTTGPLGQGVANSVGMAMASKWLAERYNTDSHTLFDYDVYALCSDGDLMEGIASEAASVAGHLKLSNLCWFYDDNHITIEGDTDLAFSENVGKRFEGMGWNVLHVDDANDTAKLADAIAQFKACNDAPTLVVVRSVIGYGAPNKQNTHGAHGAPLGWDEVALAKASYGLPENEKFYVPDGVREHFSEGIGKRGADASAAWNDIWSAYQKAHAEQAAELQQMFAGELPADWDAAIPTFEASEKGDATRNSSGKVLNAIASKVPFMIGGSADLAPSTKTNLNFDGAGDYLPTSYGGRNLHFGIREHAMAAICNGLSLSGLRAYGATFFVFTDYMRGAMRLSSIMHQPVMYILTHDSIGVGEDGPTHQPIEHLSACRAIPGLNVFRPGDANEVAACYRAAMQITDHPSAFVLSRQNMPTLCRDKYASADGCSKGGYVLGDCEGTPEVILMGSGSELSLCVEAYETLTAEGVKARVVSMPSLDLFEQQDDSYKESVLPSACTARVAVEAGIRQCWDRYLGLQGSFIGMASYGASGPYSEVYQKFGITAEAVTAAAKQAAK
>NZ_CP042914.1|WP_068130746.1|3630128_3631748_+|hypothetical-protein
MSQVSCPRCDETIRVPEVSPPADASARCPWCRETFSFGELESRLPPMLEWVGSDGETIPYSAGTLVGSSSQSEPALASAAAAGAGFAGANTVDEQETWSPELENDTESFSFADSDQPAAAEGESNEMNFLASSDASSAATGLDSSLPRTRPRAKKSASPLKTMIQMVLGGAVAIPLTGLILFGVQYMGWKTFNFGFWPFDGSGGTPNRTAAAPMDLNNRDQPQPAPRQLGDGEMPFGTMGGNGQQEDAFVPRSAANIDEIATPEPETPSAQLDGGGANEPDMSVPRLEVPELDDSLETGGDNPLEMPAVDIPVPGGDIRSPFDTPDPDAVAETAEMELPAPADAAPADPAPADAADPDSVTEVTPSAEDSPAAESPALEPPSLALLDSVEAARQLSTDLAEYEGDAAGRKNVLKNFYYALAEVGEQGQPSARAAYQSLFTQLRESGQLEQMAKFGSPWVAKGNLVKKGVFAAGTLDQQDGETVLTMAPVGGEPVSLPLEGWSENQLESEQWVGKEVYVLAKLEGPIGSRQGTVRYIEGQ
>NZ_CP042914.1|WP_068130749.1|3628650_3629853_+|hypothetical-protein
MRSLFLWLTGCVSVGVLLASPAVVRSAEPDSKNVHLRGDLQNARIAFAGKQKACVAFIGGSITEMNGYRPMVAAELQSRFPDTEFEFINAGISSTCSTSGAFRLRRDVLAHQPDLLFVEFAVNDDQDAAHAARECRRGMEGILRQAWMHDPELDIVITHFVNPPMLEKLTAGKTPTSSGQHEAVAEHYGVSSSDLARELAQRIAAGTFSWQQYGGTHPKQAGNRLAADLIVDLLDAAWAQPLPADAQPTAHSLPAPLDENSYFRGRFVSPADAKADDAWKWDRPDWSEIAGGFRDTFRNEMFLHTSEVGAELSLEFEGTAVGAFVLAGPDAGMVEVSVDGAKPHVVDLYHHFSKGLHYPRTVMFATDLPAGKHQLRLRVSGKHNDQSHGHAVRIMQFTAN
>NZ_CP042914.1|WP_084426025.1|3627867_3628623_+|polyprenol-monophosphomannose-synthase
MPAVTESAPSESALPSPRVLVVVCTYNERENLPTLLPQILAALPTADVLVVDDDSPDGTGSWAEQTAEVNPRVAVIVRKDERGLGGALKAGIRYADEQGYDFLLNLDGDQSHRPADLPRLLALATAETDAPDIVVGSRYVADGKIEGWPLHRRMMSRMVNGFATKILRLPVKDCSGAFRCYRMASLRRIPLESIRSDGYAMLEELLLALHRDGAKFAEIPITFNDRQVGESKLTTRETIRSVRSLLRMIIR
>NZ_CP042914.1|WP_068130752.1|3626834_3627665_-|hypothetical-protein
MTIAAKMNRLALCGTLAWLSLGTAATLSADEGWAPLHIATGPSAHDAPRQAAPAPSVRTVAYDADAPTIRRPTKIVDDAPSNVELLPVFEPPLAAPEEGGKPCHCDRCTSPSPRRAPVRKHAPHKPALKNPDCLVYNVLDGVAGGIEHALQLKTPQERSRRSVIHRTSCGCELCSQAPAKKRRRAKPASPMLKRLPSRTSTDFPMPPTVPMQVDAPLVDPPSEPLSHPIEELEPKPKTVPRLPAPIVPDELADPFEDDQAWRPGKNPAIKRSAYYE
>NZ_CP042914.1|WP_068130722.1|3642833_3644207_-|DUF4147-domain-containing-protein
MSLRQQTLQIWNAGVDAVRADRLISEQVRFHNAAVEIQDERFPVPAGGHVEVVGAGKAATAMASGIAQAFVQREQFDASLAGWVNVPDQTQQDVEGFHVHVGRPAGVNEPTQEAISGTQAILDRVAQLQPQDVCIALISGGGSALLTAPVTGVTLEEKLAAIRMLSGGGANIEQLNTVRKHLSRVKGGGLANACRAGTLLTLVVSDVLGDPLDLIASGPTVHDPSTAADALEILQQFDPQRSLPASIYTHLQHHAAAPADNFPAQTHTFVLGNNATAVDEAGIVAERLGFNHAMHCSRSSEGAAEEVGRHLADMAISMLRDAETPHQHPGPNCLITGGEPTVHLAPPEIRGRGGRNQQLVLAAMQRLLERDDFSAADRRRVVILSGGTDGEDGPTDAAGALLDAEVWDAFATQNLDIEDYLRRNDAYTFFQQTGGLVTTGPTHTNVCDLRVVTLQDA
>NZ_CP042914.1|WP_068130720.1|3644221_3646972_-|hypothetical-protein
MLQPTKRLVRLSPNPPAGSLRPAGTLPLRWLVAVLAVIGCLALARPLDAQLFDALERLPLQWQLAENDCRAKLLKHQIDPTGGHDRGPCEAVTLAATHGTRLLLEYRISPSHVLDELQASLWVRSAQPGPRIGMRVRYPYVHDPQSGRTVSAIVFGTAHRRAGKWDQLRIDNLPKRLREKEAAIRIEHGADADLRGRFVDAVLLDVYNQPGMMTIRVDDLSVDQMVPVGSVGVAARPSLPDPANGLASRTGNPLSSGAGMPQAAGFAVDTITRIVEYHGEPLSYLRTLGFDAVLLPAAPTAEILREASRARILIYAPPPSAPNPDWETLLEPVAAWYLGTSQDQARLPAVQREIARLAALPGRWQRPTVIAPAEAWSEYAAMVPALVYDLPPTTLGLQPGEEQDYLADMRRRTKQSVQVAVGVQTSPPSPLVQQLNAFANHVGASPVDDYGWHGLWLQSMRALQQSPQAIVFRSSGSLASGLPVDQKRALAVGFINRMIESVSPLVARAAAAGPMICPTGNYDVQRLNLGVTDLLIATTQSDSPQNVSTGEEDLLQIRLPSTMAHRFAWRLTGMTAERLDVAQTPQGPALQITDPDAAELILLSDDPSLGHRISTRLARLAMPAALDRWQLTSEAVFQIRTDWDSLVAARMVPPTAIPTGLLTGAANTLVAGEPLYRGGDGPAALRLARRADTWMMRSRDRMLANWTPPAGLQTSFPALLAPGAIPLQVSLSAQTQSGSWSRNLLPIGAFRSPTALAHSGWSHDRRIQSTSRSEVEVLSAMDEGQASRLRVEVVSNTDAPLPGGYAGTAVRVRSPAVDCPPDRLLRITARVRTLGFGGPFQGVLVYDSLGGPELGTLVRGADRWQRIEIYRHTAGPTPLQVMFEVIGAGEAMIEDVSVNIWDERSPDVRQLRPISP
>NZ_CP042914.1|WP_068130718.1|3647303_3647594_+|transcriptional-regulator
MQKSVRPVSAPVTEEMPNELKELVRAMESLPAAQRDALRPSVERVVECSTRRRRILNLVQEALSQLRLDMKYLIFDLEATRREKESLQAELDELRG
>NZ_CP042914.1|WP_068130715.1|3647687_3649220_+|serine/threonine-protein-kinase
MSLPTPEQFMQRIVDVGLADRLTVEQARRELDAGAMDLDELIRAMQRRGVLTTLQTEKILRGDRIGYFYGKYKVLYLIGAGTFARVYRAEKIGDLDTLADETKGKAIFAVKVLRKRFRDEVAQLDQFLREGRMGLKLRHPNIVSIYDINADTYNPFLTMEFVEGQTLRDLMKLRDRLPPKTAVKLMHDIASGLAHAASMGISHRDMKLSNVLVSSEGVAKLVDFGLAALADRNNPEKIADCPNARAIDYAALERGTNVRKDDPRSDIYFAGAMMYQMLSGKPALTETRDRLQRLNVSRFEQVTPIQKVVSDLPAPVIQVCTKAMELKPGERYQTAAEFQADLKKTMQRLEAGPTQKIGADGKVVVSYPEDEEDRTNEGEGLVVMVVESIVKMQDMIRQRLKNRGYRVLMISDPERALSRFDPLDDPPADCVVFSSLELGEQALEAFNRFGSDEHTAELPAILLVDRRRANMISAAKQGPRRRLLPLPLKVRELRGALSQLLADTPRRQMR
>NZ_CP042914.1|WP_068130710.1|3649260_3649707_+|hypothetical-protein
MSVFAEQLSAYLDQSGLQYQQSDASDVFQMCFDSEHGINRVLVLVADDLLQIFTYPPNKVIEAHRLAIAHAVTRANFGLRIGQFELDVDDGELRYRIAVPLGDELPSSDVLDCLLPLGGAMVERYLPAFLSIIYGNEDVKLAIKAAEL
>NZ_CP042914.1|WP_068130708.1|3649715_3650570_+|SDR-family-oxidoreductase
MTHWDDSENVAVITGASSGIGRELALQAAERGASLVLVSRSAARLAEVADACRQRGGQAIAVPTDVGNPQQCQQMIKQAVKTFGGIDYLINNAGFTMFARFSELPSPELIERMTRVNYLGSVYCTYYALPYLRQRQGRVVAVISGAGRMRGPFSTGYGGSKHAMRGFFESLRVELKPDRVSVTTVYPGFIDTGIYDRIEGADGHPVPGMKEIVPAFAMMSVERCCRKIWTAARKRKRQSVPGLTCRLGIWGDFMFPGLTEFFCQRMLPKEPPRSQRPQALDTSA
>NZ_CP042914.1|WP_068130704.1|3650668_3651613_-|SDR-family-oxidoreductase
MTDRNDFTTNEAATVLVTGCASGIGQATVETLDRAGYLVFAGVRREADIQTLRDNCSQRVRPMILDVTDEQSIHAAFAQVSEAVGKRGLDAIVNNAGIAVAGPLEHLPIERLQRQFDVNLFGVLRVCQTFLPLLRQAAKSPGPRQNARPRPRPRPRIVLIGSVASGLSLPLLGGYAGSKAALARVSDALRIELQPWNLCVSLIEPGSVVTPIVDKGIASSRQDMAELSDTARQQYEDTIAAVTNTLSTNVQKGIAASVVADKVLRVLRARHPRARYLVGSESRFVALLVRYTPLRWRDALLTRAMRLPRPGSKL
>NZ_CP042914.1|WP_148080282.1|3651760_3652480_+|CPBP-family-intramembrane-metalloprotease
MKAFDLRTELASATAGEQRKATVVLLSSTVLMLLWQCVGSMKFYHDFVKPHWLVYGDPDFTAALYFFLTAFVLLGGVPLLIIKWGLRGRFADYGLAWGNGWQTLLSLAILAPPMLLMIYAMTRFPELAASYSINPQRGLGFGLHALGFALFYVGWEIHFRGFLQFGIAPAMGRSNAILVGVMASSLMHIGRPAGDMFGGILAGLLWGVLAFQTRSILSGMLQHAMMGLSLDFWLWLQQP
>NZ_CP042914.1|WP_068130697.1|3652592_3652925_+|hypothetical-protein
MPHHFIPSCLRHRDWFALLFIWLVLALPGTLVLGGSLNRLATEKGSVSQAEEEILHSSAVQRSRSRHYRSASIPLADLAKFAGAGRRPVVTHQLVVGHRISNGLLAPLRI
>NZ_CP042914.1|WP_068130693.1|3653098_3655369_+|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase
MNTSDTSLQLESQPPLTSPSTWGRDLISGGVVFLVALPLCLGIALASGAPLFSGLVAGIVGGIVVGLISGSHTSVTGPAAGLTAIVAAQIALLGSFEAFLFAVVLGGLIQIGFGIARGGALSAFFPSSVVKGLLAAIGVILILKQIPHLLGHDTDPEGEMSFSQPDDENTFSELMTLLYGEIHIGAVVIGLLSIAVLVLWNKVDLLRKSVVPGPLIVVLLGVGLTLLFRTFDGRWLLEGNHLVQVPVAESVSQFWGFLRFPDVSVWNNPDVYLAGVTIAIVASLETLLNLEAVDKLDTRQRNSPASRELVAQGVGNTVSGLIGGLPVTSVIVRGSVNVSAGSKSKLSAIFHGIYLLVCVAMFPMYLNLIPLSALAAILLVTGFKLASPALFKQMWQEGRYQFIPFIVTLLSIVFTDLLIGILIGLAVSVLFILNSNLRRPIRRIVETHIDGDVTHIELANQVSFLNRAALDKVFNSMPHGSSVLMDATESDYIDPDVLSLIRDFKHKVAPARNIRVSLRGFRKKYQLHDDIQFADYTTRELQDKVSPEQVLEILREGNRRFVSGNRLSRDFGRQVHATADGQNPLAVVLSCIDSRVPAELVLDVGLGDIFSVRVAGNVVGTKSLGSIEYGVGVAGAKLVVVLGHTRCGAVTSSVQLVSQKRNAESETGCQHLQAIVEEIAPSVSAIANGSIAQLTEDEQERVVDEVARRNVEHTVRAILKRSDVIRSAVDAGRAQVVGALYDVKSGRIEFFDGVQA

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Crispr_ID: NZ_CP042914_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_11

3655446-3655578

Orphan

Consensus_repeat	Method
CGGGGACAGTCACCGCGATAATCGCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP042914_11

>merge|NZ_CP042914|11|3655446-3655578|CRISPRCasFinder
CGGGGACAGTCACCGCGATAATCGTCACCGCGATAATCGCCCTCGGCCGGGGACAGTCACCGCGATAATCGCCCTGACGTCGGTGGCGAGGGACGTCGGGGGGACGTCGGGGACAGTCACCGCGATAATCGCC

>NZ_CP042914|11|11|3655446-3655578|CRISPRCasFinder
CGGGGACAGTCACCGCGATAATCGTC	ACCGCGATAATCGCCCTCGGC
CGGGGACAGTCACCGCGATAATCGCC	CTGACGTCGGTGGCGAGGGACGTCGGGGGGACGT
CGGGGACAGTCACCGCGATAATCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068130710.1\|3649260_3649707_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341116
NZ_CP042914.1\|WP_068130670.1\|3662633_3663815_-\|cadherin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|206637
NZ_CP042914.1\|WP_068130708.1\|3649715_3650570_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235726
NZ_CP042914.1\|WP_068130667.1\|3663814_3665500_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130720.1\|3644221_3646972_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130715.1\|3647687_3649220_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_068130697.1\|3652592_3652925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130677.1\|3658916_3660263_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP042914.1\|WP_148080282.1\|3651760_3652480_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP042914.1\|WP_068130704.1\|3650668_3651613_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP042914.1\|WP_068130687.1\|3657276_3657939_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP042914.1\|WP_068130718.1\|3647303_3647594_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130693.1\|3653098_3655369_+\|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase	unknown	unknown	gnl\|CDD\|223732
NZ_CP042914.1\|WP_084426019.1\|3665660_3667388_-\|CRTAC1-family-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP042914.1\|WP_068130690.1\|3655766_3656843_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068130672.1\|3660954_3662403_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP042914.1\|WP_068130656.1\|3669260_3670202_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042914.1\|WP_068130722.1\|3642833_3644207_-\|DUF4147-domain-containing-protein	unknown	unknown	gnl\|CDD\|225254
NZ_CP042914.1\|WP_068130683.1\|3658175_3658706_-\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP042914.1\|WP_148080283.1\|3667384_3668803_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068130710.1\|3649260_3649707_+\|hypothetical-protein	gnl\|CDD\|341116	cd17033, DR1245-like, possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans. This family includes a possible type III secretion system (T3SS) chaperone protein DR1245 found in Deinococcus radiodurans, a bacterium that is exceptionally resistant to the lethal effects of ionizing radiation (IR), ultraviolet light and other DNA-damaging agents. DR1245, a protein of unknown function conserved only in the Deinococcaceae, and with strong structural homology to YbjN proteins and T3SS chaperones, may display some chaperone activity towards DdrB, a protein found to be highly up-regulated following irradiation; DR1245 may also bind to other substrates.	6.97521e-17
NZ_CP042914.1\|WP_068130670.1\|3662633_3663815_-\|cadherin-repeat-domain-containing-protein	gnl\|CDD\|206637	cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers.	1.27528e-06
NZ_CP042914.1\|WP_068130708.1\|3649715_3650570_+\|SDR-family-oxidoreductase	gnl\|CDD\|235726	PRK06181, PRK06181, SDR family oxidoreductase.	1.36711e-94
NZ_CP042914.1\|WP_068130677.1\|3658916_3660263_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	9.48266e-15
NZ_CP042914.1\|WP_068130715.1\|3647687_3649220_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.62044e-66
NZ_CP042914.1\|WP_148080282.1\|3651760_3652480_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	4.29295e-05
NZ_CP042914.1\|WP_068130704.1\|3650668_3651613_-\|SDR-family-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.90409e-78
NZ_CP042914.1\|WP_068130687.1\|3657276_3657939_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	2.86018e-10
NZ_CP042914.1\|WP_068130693.1\|3653098_3655369_+\|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.11214e-83
NZ_CP042914.1\|WP_084426019.1\|3665660_3667388_-\|CRTAC1-family-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	2.09567e-14
NZ_CP042914.1\|WP_068130672.1\|3660954_3662403_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.35881e-176
NZ_CP042914.1\|WP_068130656.1\|3669260_3670202_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	1.41768e-67
NZ_CP042914.1\|WP_068130722.1\|3642833_3644207_-\|DUF4147-domain-containing-protein	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	9.18543e-99
NZ_CP042914.1\|WP_068130683.1\|3658175_3658706_-\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	9.43893e-94
NZ_CP042914.1\|WP_148080283.1\|3667384_3668803_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	8.58588e-15

>NZ_CP042914.1|WP_068130693.1|3653098_3655369_+|bifunctional-SulP-family-inorganic-anion-transporter/carbonic-anhydrase
MNTSDTSLQLESQPPLTSPSTWGRDLISGGVVFLVALPLCLGIALASGAPLFSGLVAGIVGGIVVGLISGSHTSVTGPAAGLTAIVAAQIALLGSFEAFLFAVVLGGLIQIGFGIARGGALSAFFPSSVVKGLLAAIGVILILKQIPHLLGHDTDPEGEMSFSQPDDENTFSELMTLLYGEIHIGAVVIGLLSIAVLVLWNKVDLLRKSVVPGPLIVVLLGVGLTLLFRTFDGRWLLEGNHLVQVPVAESVSQFWGFLRFPDVSVWNNPDVYLAGVTIAIVASLETLLNLEAVDKLDTRQRNSPASRELVAQGVGNTVSGLIGGLPVTSVIVRGSVNVSAGSKSKLSAIFHGIYLLVCVAMFPMYLNLIPLSALAAILLVTGFKLASPALFKQMWQEGRYQFIPFIVTLLSIVFTDLLIGILIGLAVSVLFILNSNLRRPIRRIVETHIDGDVTHIELANQVSFLNRAALDKVFNSMPHGSSVLMDATESDYIDPDVLSLIRDFKHKVAPARNIRVSLRGFRKKYQLHDDIQFADYTTRELQDKVSPEQVLEILREGNRRFVSGNRLSRDFGRQVHATADGQNPLAVVLSCIDSRVPAELVLDVGLGDIFSVRVAGNVVGTKSLGSIEYGVGVAGAKLVVVLGHTRCGAVTSSVQLVSQKRNAESETGCQHLQAIVEEIAPSVSAIANGSIAQLTEDEQERVVDEVARRNVEHTVRAILKRSDVIRSAVDAGRAQVVGALYDVKSGRIEFFDGVQA
>NZ_CP042914.1|WP_068130697.1|3652592_3652925_+|hypothetical-protein
MPHHFIPSCLRHRDWFALLFIWLVLALPGTLVLGGSLNRLATEKGSVSQAEEEILHSSAVQRSRSRHYRSASIPLADLAKFAGAGRRPVVTHQLVVGHRISNGLLAPLRI
>NZ_CP042914.1|WP_148080282.1|3651760_3652480_+|CPBP-family-intramembrane-metalloprotease
MKAFDLRTELASATAGEQRKATVVLLSSTVLMLLWQCVGSMKFYHDFVKPHWLVYGDPDFTAALYFFLTAFVLLGGVPLLIIKWGLRGRFADYGLAWGNGWQTLLSLAILAPPMLLMIYAMTRFPELAASYSINPQRGLGFGLHALGFALFYVGWEIHFRGFLQFGIAPAMGRSNAILVGVMASSLMHIGRPAGDMFGGILAGLLWGVLAFQTRSILSGMLQHAMMGLSLDFWLWLQQP
>NZ_CP042914.1|WP_068130704.1|3650668_3651613_-|SDR-family-oxidoreductase
MTDRNDFTTNEAATVLVTGCASGIGQATVETLDRAGYLVFAGVRREADIQTLRDNCSQRVRPMILDVTDEQSIHAAFAQVSEAVGKRGLDAIVNNAGIAVAGPLEHLPIERLQRQFDVNLFGVLRVCQTFLPLLRQAAKSPGPRQNARPRPRPRPRIVLIGSVASGLSLPLLGGYAGSKAALARVSDALRIELQPWNLCVSLIEPGSVVTPIVDKGIASSRQDMAELSDTARQQYEDTIAAVTNTLSTNVQKGIAASVVADKVLRVLRARHPRARYLVGSESRFVALLVRYTPLRWRDALLTRAMRLPRPGSKL
>NZ_CP042914.1|WP_068130708.1|3649715_3650570_+|SDR-family-oxidoreductase
MTHWDDSENVAVITGASSGIGRELALQAAERGASLVLVSRSAARLAEVADACRQRGGQAIAVPTDVGNPQQCQQMIKQAVKTFGGIDYLINNAGFTMFARFSELPSPELIERMTRVNYLGSVYCTYYALPYLRQRQGRVVAVISGAGRMRGPFSTGYGGSKHAMRGFFESLRVELKPDRVSVTTVYPGFIDTGIYDRIEGADGHPVPGMKEIVPAFAMMSVERCCRKIWTAARKRKRQSVPGLTCRLGIWGDFMFPGLTEFFCQRMLPKEPPRSQRPQALDTSA
>NZ_CP042914.1|WP_068130710.1|3649260_3649707_+|hypothetical-protein
MSVFAEQLSAYLDQSGLQYQQSDASDVFQMCFDSEHGINRVLVLVADDLLQIFTYPPNKVIEAHRLAIAHAVTRANFGLRIGQFELDVDDGELRYRIAVPLGDELPSSDVLDCLLPLGGAMVERYLPAFLSIIYGNEDVKLAIKAAEL
>NZ_CP042914.1|WP_068130715.1|3647687_3649220_+|serine/threonine-protein-kinase
MSLPTPEQFMQRIVDVGLADRLTVEQARRELDAGAMDLDELIRAMQRRGVLTTLQTEKILRGDRIGYFYGKYKVLYLIGAGTFARVYRAEKIGDLDTLADETKGKAIFAVKVLRKRFRDEVAQLDQFLREGRMGLKLRHPNIVSIYDINADTYNPFLTMEFVEGQTLRDLMKLRDRLPPKTAVKLMHDIASGLAHAASMGISHRDMKLSNVLVSSEGVAKLVDFGLAALADRNNPEKIADCPNARAIDYAALERGTNVRKDDPRSDIYFAGAMMYQMLSGKPALTETRDRLQRLNVSRFEQVTPIQKVVSDLPAPVIQVCTKAMELKPGERYQTAAEFQADLKKTMQRLEAGPTQKIGADGKVVVSYPEDEEDRTNEGEGLVVMVVESIVKMQDMIRQRLKNRGYRVLMISDPERALSRFDPLDDPPADCVVFSSLELGEQALEAFNRFGSDEHTAELPAILLVDRRRANMISAAKQGPRRRLLPLPLKVRELRGALSQLLADTPRRQMR
>NZ_CP042914.1|WP_068130718.1|3647303_3647594_+|transcriptional-regulator
MQKSVRPVSAPVTEEMPNELKELVRAMESLPAAQRDALRPSVERVVECSTRRRRILNLVQEALSQLRLDMKYLIFDLEATRREKESLQAELDELRG
>NZ_CP042914.1|WP_068130720.1|3644221_3646972_-|hypothetical-protein
MLQPTKRLVRLSPNPPAGSLRPAGTLPLRWLVAVLAVIGCLALARPLDAQLFDALERLPLQWQLAENDCRAKLLKHQIDPTGGHDRGPCEAVTLAATHGTRLLLEYRISPSHVLDELQASLWVRSAQPGPRIGMRVRYPYVHDPQSGRTVSAIVFGTAHRRAGKWDQLRIDNLPKRLREKEAAIRIEHGADADLRGRFVDAVLLDVYNQPGMMTIRVDDLSVDQMVPVGSVGVAARPSLPDPANGLASRTGNPLSSGAGMPQAAGFAVDTITRIVEYHGEPLSYLRTLGFDAVLLPAAPTAEILREASRARILIYAPPPSAPNPDWETLLEPVAAWYLGTSQDQARLPAVQREIARLAALPGRWQRPTVIAPAEAWSEYAAMVPALVYDLPPTTLGLQPGEEQDYLADMRRRTKQSVQVAVGVQTSPPSPLVQQLNAFANHVGASPVDDYGWHGLWLQSMRALQQSPQAIVFRSSGSLASGLPVDQKRALAVGFINRMIESVSPLVARAAAAGPMICPTGNYDVQRLNLGVTDLLIATTQSDSPQNVSTGEEDLLQIRLPSTMAHRFAWRLTGMTAERLDVAQTPQGPALQITDPDAAELILLSDDPSLGHRISTRLARLAMPAALDRWQLTSEAVFQIRTDWDSLVAARMVPPTAIPTGLLTGAANTLVAGEPLYRGGDGPAALRLARRADTWMMRSRDRMLANWTPPAGLQTSFPALLAPGAIPLQVSLSAQTQSGSWSRNLLPIGAFRSPTALAHSGWSHDRRIQSTSRSEVEVLSAMDEGQASRLRVEVVSNTDAPLPGGYAGTAVRVRSPAVDCPPDRLLRITARVRTLGFGGPFQGVLVYDSLGGPELGTLVRGADRWQRIEIYRHTAGPTPLQVMFEVIGAGEAMIEDVSVNIWDERSPDVRQLRPISP
>NZ_CP042914.1|WP_068130722.1|3642833_3644207_-|DUF4147-domain-containing-protein
MSLRQQTLQIWNAGVDAVRADRLISEQVRFHNAAVEIQDERFPVPAGGHVEVVGAGKAATAMASGIAQAFVQREQFDASLAGWVNVPDQTQQDVEGFHVHVGRPAGVNEPTQEAISGTQAILDRVAQLQPQDVCIALISGGGSALLTAPVTGVTLEEKLAAIRMLSGGGANIEQLNTVRKHLSRVKGGGLANACRAGTLLTLVVSDVLGDPLDLIASGPTVHDPSTAADALEILQQFDPQRSLPASIYTHLQHHAAAPADNFPAQTHTFVLGNNATAVDEAGIVAERLGFNHAMHCSRSSEGAAEEVGRHLADMAISMLRDAETPHQHPGPNCLITGGEPTVHLAPPEIRGRGGRNQQLVLAAMQRLLERDDFSAADRRRVVILSGGTDGEDGPTDAAGALLDAEVWDAFATQNLDIEDYLRRNDAYTFFQQTGGLVTTGPTHTNVCDLRVVTLQDA
>NZ_CP042914.1|WP_068130690.1|3655766_3656843_-|hypothetical-protein
MARSVRSEVFNPHEIGVYHTFNRTVRKSHLHGIDKETGRDYSYRRDWFRKRMQFLANHFCIDVLAYAIMSNHWHAVLRNRPDLVAKLSDRDVAIRWLTITARSDRRRKKKRPIREPEIQAILNDPERVKELRNRLSHISWFVRLMCQTIARRCNLEDEVAGHFFEDRYKLNRLDDDADVLAAMAYVDLNPLRAYLSDSLDDFAEVSICDRLRTLDDTDVDFASWLTPLARDGKADGQPAEVANEQRQPPRGEKVEPLRDQLDCLPIRLEDYKKLLWRLAVESRPELQANSSLTKELFQGSIPMGNSDIDVEEILARQKQFQRCSNTPSGPQAPAQTSDHEDSSPPIGTLADHLSPAPV
>NZ_CP042914.1|WP_068130687.1|3657276_3657939_-|LuxR-family-transcriptional-regulator
MFMAEGNAIYSVVSNAIRNGDPLEDLLEPLPDAIYLTSRDGRLEWANSSFLYLFAGSLDRSVQLPPVDITYDPLTRMSDDMIVGGCDALEFQYKSYDVRHRAIILRTVKRSLADCGDPRIAIFGMTRVVEIVDPTGEDPTARIKRLWGCYQGLSERDQGVLTGLARGEKLKDVAKRMRITEKTVDNRRKAALKILGLRSQVDLVAMFVRFHDRGYGNFGF
>NZ_CP042914.1|WP_068130683.1|3658175_3658706_-|molybdopterin-adenylyltransferase
MGRLAIGILTVSDRASRGEYTDRGGPAIEEYLAEVIDGDYRTIREIVCDELAEIANALIRMADQPSCGLVITTGGTGPAPRDVTPEATHQVCDKMLPGFGEQMRQVSLQYVPTAILSRQTAGVRGTTLIVNLPGQPRAIAQCLDAIFPAIPYCLELIEAGEIKTNASRFTAFLPKK
>NZ_CP042914.1|WP_068130677.1|3658916_3660263_+|PQQ-binding-like-beta-propeller-repeat-protein
MLRKRLLPALGLLSLGLQFSLASPTLADDWLRFRGPNGTGLASSSESPPIEWSEEKNLRWSLDLLGPGHSSPIVVGDKVFLTCWTGYGVDDEESGKPEDLKRHLLCVDRASGKLLWERAVAARLPEDEYAGMFAEHGYASHTPVSDGQYVFCFFGKSGVHAFDLEGNPVWQAEVGEGLDQRKWGSASSLILTDELVIVTAGPESGTLYGLDKKTGETRWNANVGLSGMWGTPLLAPVDEKRTDLVVGVPDEVWGLNPATGKLRWYCDGIEGGSVNSSPVLADSVVYMIDGRNGDALAVRVGGKGDVNQSHVVWHESHRGRISSPIVHDGLLYWISSGVLNCVDAATGERVYQERLNTSDNSATRGPSRRGGRGGQDYGSPVVAGDHLFYINRRGIGVVVQLGKQFKQLATNTFDGASGDFSATPAIADGQLFIRSTKKLYCVAEPTDS
>NZ_CP042914.1|WP_068130672.1|3660954_3662403_-|IS1380-family-transposase
MAQRKRKRPVLKRLRRQAVDFDFDGGTLTTDGGLLLLREVDRRLDLIRRLDQAIPDPRDPLHTVHPQAELLTSRIFAIAAGYEDGNDHDALRHDPAFQVAAGRVPAEHNYDGDHSPLASPSTHSRLENRIDTKTILRLNELLVDLFLESYEQPPEEIILDYDATDDTIHGNQEQRHFNGFYDGYCFLPLYVFCDDHLLVSHLRPSKVGAAHHARPITKLLIQKIRSRWPDVKIIIRGDSGFAIERLMRWCDKNDVGYVFGLQHNNVLDKQIACEMTQAQIRHGLYGGTQSVFKWFRYRTQKSWDCSRWVVGKAEYSSQGTNPRFVVTNLPSEEGIVDPTYRRVTIDGKRVRQLQDAGTLCSVAINPEEFYRTRYCPRGEMENRIKETQLGLFADRTSCSRFVANQFRLMLSSFAYVLLDGVRRLGLSDTKAARLRVDTIRLRLLKIAARVRVTSRRVVFHMASHCPSEALYEHVMQRLCRSD
>NZ_CP042914.1|WP_068130670.1|3662633_3663815_-|cadherin-repeat-domain-containing-protein
MTKRERILAIAVGGILVLLVLQWGLNRFRDARSQRDIQIARMESELQTANGIKRMGLSATDRMAGFLRRSLPSNGDEAVNAYMEWLYTLMEASGVSGTDVKRLNSAASGDLYRAYTYRVSANGDMEEMVWLLHAFHRTDYLHRIRSMTIKPVRGDAQLTLSMTIEVLAMNEAADKQPAPEEPSPLVEEDVEVYVEAILNRNFFAPPNQPPRYAGNRTVEAVVDSEFSFTPKFDDPDGDEVLLRLAGEVPEGVRIDERSGEIRLRRSELGELALTVEARDSGRPARVVQQQLLVNVVQAPPPKEEPKTTAFDDATQAFVTALIYSRGSWEAWVTVRTKGEKLELRAGDEFEVGELSGKVIDVTQKFVQLEVDDRRFTVRLDGNLADAAKQSLVD
>NZ_CP042914.1|WP_068130667.1|3663814_3665500_-|hypothetical-protein
MPKKIAIDWDATELRLVVGRTSASGVTVVDFAVVPLDGSEEEDIAGVLEKTLQDRNLGKLPALVTIGRGKAELRQLQLPPVPEEELPDMIRFQAVRDFAAAGEKAIIDFVNVRHDSEGVEVVAAAIAPDQLANIAKITDATTHPPERIVLRPLAAAALFAKHQPTDGDVVLVDLLADDADIVILRNGKPVFVRSVRLPVNEQARTAALAGEVRRSVMASNTGAVESAARRIVIWGRKADHLDDIQQLSERMGLSVETVDPLDLVTVDDKLAKSDTSHRGRLAPLIGLLDVDEHGSGLLIDFRNPRKRPEPASQRSRYLLYGTAAAAAVLMIGFSVWLSLHRRDQKIAELDRQLAELKPIVAASEVEIARAERVDTFLDGNVIWLEELKRVSETIPPAEDLILNSVDANLPQRRGAELILSGKVTQPRAFDTMLSGLQDEQHRVIGAGINQASSQDRYGWVFNNMRVVIEPEVVRNMRYLKRASPQPTNADEETTAAEPAEVVEQPEAVEQPEAVDDAEANVSEAGRAAPAQAVDQDASDTPSTSSEPQANDAADDDEQENL
>NZ_CP042914.1|WP_084426019.1|3665660_3667388_-|CRTAC1-family-protein
MTPPSEIQSLARSATRKQTLNMSLAVLAAILLSMSGCGSQTTPPATAPKDALVTTWFRDATAESQIDFVYRNGNESQQYSIAEVLGGGVGVLDVDLDGFMDFFLVGGGTITANAPLQGLDNGLFLHDAQRRYREVSAAAGVATSEFYAHGVAVGDYNGDGFDDLLVTGYGGLMLYRNQGDGSFTPVTAAAELSDRQWSSSAAWGDLNNDGHLDLYVAHYVDWSWQNNPDCFAGGTERAVCTPLVFDGLDDTLYLSRGDGRFIDASQTAGLSAAGKGLGVTLLDFDGDQQLDIYVANDTDENFLYHNQGGGRFIEQAVLAGTAYGDGGMSDGSMGVSTFDYNSDGLPDLWVSNFENDTFALYRNDGGGAFTHVSGATGLFAIGTTHVGWGTITDDLNNDGQADIVVTNGHVLANPPGGQQQQKPLLLISQQQRFELLAIDPQEYLGQRHNGRGLAKADIDNDGDWDLGFTHLNAPFKLLRNDIRTDRPWVGLQLIGRTSNRNAIGAKVTLTLPDGQTSTRFVIGGSSYLSHSDSRLLWTLPADAQGSSFEILWPSGRRQRLPAPPPGQYVCLVEPR
>NZ_CP042914.1|WP_148080283.1|3667384_3668803_-|tetratricopeptide-repeat-protein
MSRRPNAESRSKPNTTGKPNATGTPLADGKTPSRRWARRWAIAALGLLLLLSAIWATGVLAPLAWAQADYQLLQRNHSDALYWGRVATRLQGDPAQLDLMQARIERRHGDAEAMERHLVTALAKGLSNQQAERERALAQAQSGDLQPVADLLGQWMQDPGNSAADIADAYSLGLRAEGRLAEAKVLISVWASDCPDDPKAFVEQGRIAEAEFRKPDAEQQFHRAVEVNPRYPVALYALGQWLLEQKRPQEALEQLERCSRLDPQCRPAADILRAKCQRLLGNPESAAALLADSLRASNRELEQAYLRLCTRPQHGMAEYEMGMVEFDAQRYQQAADYFQRAVNQNPQTDDAEYQLGLTLKRLGQDERSQEILTRVTKHRTELAKLAAIASRIASHPNDFEARFRMGCILMDNGRPQSGLFHLNCVLAMEPEHLPTHRRLADYYAAHQQQHPQYAALATEHQRWLESAGDAKP
>NZ_CP042914.1|WP_068130656.1|3669260_3670202_+|DUF1559-domain-containing-protein
MLHRIPQGRPSTAVKRAGFTLVELLVVIAIIGVLVGLLLPAVQAAREAARRMSCSNNMKQLGLAMHNYHDTFRVFPYGHTEDGYVTRKRDCWVQRILPFIEQGALQEQYETENQTWIMDVDATVKDFQIPGMSCPSDSVSPGLGANGGVRSGGAGFQGNYVGCTGDTLMLHKSDLRGLFYYESSNNFASIVDGTSNTLMMSEVILGGPETGGWGNGGGYWGGARWGGYGFTTLESPNTTVPDRVYSCKSTNYRLLPCESLTGADTTQVFARSLHPGGVEACMADGSVRFVTETINLIPYRAMSTVNQGEVVTE

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Crispr_ID: NZ_CP042914_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_12

3736028-3736141

Orphan

Consensus_repeat	Method
CCACGCTCTGGTGAGCGTAGCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_12

>merge|NZ_CP042914|12|3736028-3736141|CRISPRCasFinder
CCAATCTCTGGCGCGATCGGCTACGGTGCGCTGCGACCACGCTCTGGTGAGCGTAGCTACGGGGACGCGGTAGTTAGGATGCGCGGTCCCACGCTCTGGCGAGCGTAGCTACGG

>NZ_CP042914|12|12|3736028-3736141|CRISPRCasFinder
CCAATCTCTGGCGCGATCGGCTACGG	TGCGCTGCGACCACGCTCTGGTGAGCGTAGCTACGGGGACGCGGTAGTTAGGATGCGCGGTC
CCACGCTCTGGCGAGCGTAGCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_148080291.1\|3747129_3748086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080696.1\|3720223_3720580_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275316
NZ_CP042914.1\|WP_068132377.1\|3724969_3730225_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|378861
NZ_CP042914.1\|WP_068130557.1\|3720607_3723289_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP042914.1\|WP_068130559.1\|3718084_3720034_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP042914.1\|WP_084426311.1\|3741396_3745026_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NZ_CP042914.1\|WP_068130077.1\|3723327_3724734_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|373239
NZ_CP042914.1\|WP_084426000.1\|3716672_3717833_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|223155
NZ_CP042914.1\|WP_068132366.1\|3746153_3747107_+\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|376676
NZ_CP042914.1\|WP_068132420.1\|3739812_3741321_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274225
NZ_CP042914.1\|WP_084426328.1\|3737057_3737864_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_CP042914.1\|WP_068132362.1\|3748082_3748958_+\|DUF4129-domain-containing-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068132423.1\|3730337_3732467_-\|flotillin	unknown	unknown	gnl\|CDD\|225177
NZ_CP042914.1\|WP_068132369.1\|3738077_3739694_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|223108
NZ_CP042914.1\|WP_084426317.1\|3733499_3733994_+\|DUF1851-domain-containing-protein	unknown	unknown	gnl\|CDD\|370180
NZ_CP042914.1\|WP_068132360.1\|3748954_3750418_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237871
NZ_CP042914.1\|WP_148080290.1\|3732466_3733237_-\|DUF1449-family-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_084426313.1\|3736143_3736848_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP042914.1\|WP_084426315.1\|3734619_3735990_+\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379079
NZ_CP042914.1\|WP_068132367.1\|3745206_3746157_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_148080696.1\|3720223_3720580_+\|hypothetical-protein	gnl\|CDD\|275316	TIGR04523, conserved_hypothetical_protein, helix-rich Mycoplasma protein. Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.	2.43639e-06
NZ_CP042914.1\|WP_068132377.1\|3724969_3730225_-\|AAA-family-ATPase	gnl\|CDD\|378861	pfam12458, DUF3686, ATPase involved in DNA repair. This domain family is found in bacteria, and is approximately 450 amino acids in length. There are two conserved sequence motifs: DVF and SPNGED.	0
NZ_CP042914.1\|WP_068130557.1\|3720607_3723289_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP042914.1\|WP_068130559.1\|3718084_3720034_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP042914.1\|WP_084426311.1\|3741396_3745026_-\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	3.96741e-39
NZ_CP042914.1\|WP_068130077.1\|3723327_3724734_-\|IS4-family-transposase	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	7.28599e-14
NZ_CP042914.1\|WP_084426000.1\|3716672_3717833_-\|prephenate-dehydratase	gnl\|CDD\|223155	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism].	1.08494e-103
NZ_CP042914.1\|WP_068132366.1\|3746153_3747107_+\|stage-II-sporulation-protein-M	gnl\|CDD\|376676	pfam01944, SpoIIM, Stage II sporulation protein M. SpoIIM is on e of four stage II sporulation proteins that is necessary for the forespore inside the mother-cell to be properly internalized through the breakdown of peptidoglycans trapped between the membranes of the septum separating the forespore and the mother-cell. The four proteins working in sequence are SpoIIB, pfam05036, SpoIIM, SpoIIP, pfam07454, and finally SpoIID, pfam08486. D, M and P are in a complex with each other and the complex assembles in a hierarchical manner such that M, which serves as a membrane anchor, recruits P to the septum and P, in turn, recruits D to the septum.	1.19322e-23
NZ_CP042914.1\|WP_068132420.1\|3739812_3741321_-\|hypothetical-protein	gnl\|CDD\|274225	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP\|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.	1.41022e-08
NZ_CP042914.1\|WP_084426328.1\|3737057_3737864_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	3.89957e-38
NZ_CP042914.1\|WP_068132423.1\|3730337_3732467_-\|flotillin	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	5.02007e-47
NZ_CP042914.1\|WP_068132369.1\|3738077_3739694_+\|L-aspartate-oxidase	gnl\|CDD\|223108	COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].	0
NZ_CP042914.1\|WP_084426317.1\|3733499_3733994_+\|DUF1851-domain-containing-protein	gnl\|CDD\|370180	pfam08906, DUF1851, Domain of unknown function (DUF1851). This domain is found at the C-terminus of a variety of proteins that are functionally uncharacterized.	3.08809e-08
NZ_CP042914.1\|WP_068132360.1\|3748954_3750418_+\|hypothetical-protein	gnl\|CDD\|237871	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional.	8.16736e-05
NZ_CP042914.1\|WP_084426313.1\|3736143_3736848_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.00289e-26
NZ_CP042914.1\|WP_084426315.1\|3734619_3735990_+\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	7.87411e-09
NZ_CP042914.1\|WP_068132367.1\|3745206_3746157_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.56478e-18

>NZ_CP042914.1|WP_084426315.1|3734619_3735990_+|right-handed-parallel-beta-helix-repeat-containing-protein
MRACVSLVIVVCSAVTACAQQPAADSAARIGTGDGVADDTAAIQAAVDRSTGNIQLGKGTYRITKPIVIDLDKVTTTAIHGNGVARIVMEGAGPAFRFKGTHQGTAAPRTFKVRTWDRESSPMVDGLEIVGKHAEACGIEADGTMQLTVTRVVVREALHGIHLIGRNRNVTLSECHVFNGTGVGVFLDHLNLHQINIVGCHISYNDRGGIVLKDSEVRNLQIGSCDIEGNMGGADSEPAANILLDASGTSIGEVAITGCTIQHSHDAPKSANIRILGRSKAVPFTSEQRHGNFTIANNILSDVQVNIDIKDARGVAITGNTIWKGFSSNLVVENCQSVVMSGNVFDRNPRYGYGDGKDAKGGAKFTGCSDCTISGNHFYGKVAAEAALVLRRCQRLNVTGCSILDYGNCGLLLDQVTRSRVSDCLIRDDRPQAEGVSIAQSGDNQVQISDCQLSHP
>NZ_CP042914.1|WP_084426317.1|3733499_3733994_+|DUF1851-domain-containing-protein
MKITWKELTLNPDDMDFDELLSDWRWLVPESMVPIVVTALGDLFLQDDDNRVHWLDTGAGTLEQVASSLPEFEQKIVQPENADRWFLPQLIGDLIDDEKRLGPGQCYSWDVPPGLSGEVCVDNVEPKDIRVHFSLFGQIFQQTKDLPEGTPITEIVIEDDEPSE
>NZ_CP042914.1|WP_148080290.1|3732466_3733237_-|DUF1449-family-protein
MWNAVETFLDSVFIGPMWPASVLMGLLIAYLLLSLVGAVDMDLDGPDADLGGDLVGDLGADLDAPEVAAGLPDAADADFDVDVETAADVDVGHDASDLMGGAGMMTLRWLNLGKIPIIIWAGTFTLLFWCVSWLFWNHFDFSRYQPTLLTSIGLSARNFVVAVGLTKLATGPMTKIFAPELQYNAANLMGQECVVWTAQATEKFGQARFKTDAAPLLLNIRTDGCLMKKGDRARIVGFDPHTRIYIVSQADSEVPS
>NZ_CP042914.1|WP_068132423.1|3730337_3732467_-|flotillin
MLPILFGLSELTQTGLVVIGIAMMMLLLLVIVASKYYVKVGPDEAVVRSGAGGLRTCTAGGIFVIPLLQRKEHMDLTLKSFEIARTGSEGLICRDNIRADIRVAFFIRVDKSPEEIKEVAQSIGAKRCSQLETLRELFDAKFSEALKTVGKQFDFVDLYEQREEFKGEILKVIGTDLNGYRLDDAAIDFLEQTSLDLLNPHNILDAEGIKKITELTASEKVKENQFTRDKEKTLKKQDVEAEETILELERQRVEAVEKQTREIAEIKAREHASAAKVEEEQRLESVRARIRTEEELGIAEENKLRQILVAQRNKERTDAVEQERVTRDRDLEMTERMRLVGVADIEKEKAIEVEKRNIQEVIRERVAVERAVVEEQERIKDTEEIAMAERLKKVQVTAAEMSAEENLIKQVKAAQAEREAADLFAEKIRVEAEAKRDAAEKDAAAAKMIAEGSAATTAAPGLADAQVQEAKADALQKEGLAEAAVLEKKAVAEAKGIEAKAEAMEKQGLAEAKVSLEKYHSEATGITEKADAMKKLDGVGKEHEEFKIKIEKEKDVEIAAINAQRGIAESQAGVVGDALRAARIDIVGGDGEFFDQITSAVKGGKAIDRFVYNSRVATDVKDTFFSGNPEYFRDKLMTLTQQFNLDTGDVKDLSIAALIAKLMGLAETDDVRQQLTSLLGMAGTAGVADQPVRRLTVQNSADKSNGTVS
>NZ_CP042914.1|WP_068132377.1|3724969_3730225_-|AAA-family-ATPase
MTTGTYEVLRNRLRDAAGKLRSRIETLNEERSATFGNIQTQLLATERITTEHNCVPRDLIAIGNQFLFGYNVQFGLKTETTLEDVFGVYCLKDRTFHAAPLKEMIDDDRFERDFHELYRFYRNTTFAKFFTAGPFVYMVFQVGKSESDIKTFKWRRVGSRFEYIDNRSDHEVVYPSQHEFVWQRATRDQHRYGEHPHISIEDRVFVETVGGDLTVKVEDNTASGKGIYAEPVDNPDQTLDDAEVHWATLGNLILLKMHPYQERDARYLLFNAKIQKAMRLDDIQHACILLPDDHGIIFSGGYYLQTGDFKRFDHGLSEMVYARSIAASNGEDFLYLFYNHAHGTYVQLRYNLIRQEVDTPLICNGQTFFDDGLMVCFRAQEQPQKHHAIQLWQTPFTGPDYVAHSNTDSLLFKIGNKELVRGMAECSEIMQLIDKDDSYDGLYVDLAKKSGDVLDSYFWLDKPETQRLDEPLRSIRDTANAAIEEFERVVRVRRDTEEKTSAVEQAVETLIKSIERSRFDNIDAFVDALAQLRTQRGHAIGLRELRYVDGERIDALETDIAERSERVSRRCVDFLLQDDALQPYRQRVLDTEQQVESVATVADAKKLDEHIDEASGQLELLTETVSNLQIDDTTKRTQIIDQISDVFASLNRVRSRLKARTSELASGEGRAEFASQLKLLEQTVAGYLDICDTPEKCEQYLTKVMVQLEELEGRFAEFDEFIEQLTERREELYNAFESRKVQLVEKRNRRAESLANAADRILTGIESRARSMESADEILAYFAADLMVDKIRGIVTNLMELDDAVRVEDIQSRLKTIREDSLRQLKDRQDLYEDGGDTIRLGRHRFAVNTQKLDLTTVLRDQQICLHLTGTQFFEPLVHEDLQAAEDLWTQDLANENNELYRAEYLAVDLFQQWRAIERQARPAVDDNWLRQQISGRFAEGYAKGVHDHDALAILTTLIDIDNKIGLLRHRPTVRAAAWLWWLRLLDPQLREQLTEWIGGFANLARAYPNAQPAREFRQRLVRLLNDPTAEHTPRDASSLSWTELFPQVGAEEIAAYLFDQLVDPANHLTCSGRVAALLTAFNDSLPAIDRRRLLEQSIEANADHPLQAFVLGRNWADAFLAAHPQTDALDPVEAYRDELAIRIAFADDQEFVAQDVNIAVRLEGLAGAHPRIQKGQLTVQYHELLERVGRYRSEVVPRYERLQTTKLRLVDEARDDMRLEEFRPRVLTSFVRNQLLDEVYLPLIGDNLAKQIGVTGEGKRTDRMGLLLLISPPGYGKTTLMEYIANRLGLVFMKINGPAIGHNVTSLDPDEAPNAAAREEVERLNLALEMGDNVLLYLDDIQHTHPEFLQKFISLCDATRKIEGVRNGRTRTFDLRGRRVAVVMAGNPYTESGARFQIPDMLSNRADVYNLGEIIGESRDAFEISYLENCLTSNTVLAPLASASPSDARALIHAAERNSLDGLEMESSFSADQVREMFEVLKKLLKVRDCVLKVNRQYIRSAAQADAYRTEPPFKLQGSYRNMNRIAERVVAVMNEDELQALIIGNYEQDAQTLTTDNESNVLKFKELNGLLTKEEKERWEAIKYAYVESVKMAGLDSDDQAGQLMRQLGSMRDGLESIRQVIARAVAAHDDSAEVRMDERVDGLRQSFSNAGQQLTEAINKTSKQLQQISEFQASNPPDQNVIVQHKVPRVMLDLVRGQFHLMQEWMRPLMLEAGENGRQLDDLKKLIESTLADYDRIRNELEDASDSP
>NZ_CP042914.1|WP_068130077.1|3723327_3724734_-|IS4-family-transposase
MTIEPATIEHEFDTIDFGHKSRNDRSKELLQALFANPQASINAACDKWCAAKGAYRFLDNPKADSQEILAAHRRATIKRIKSQKVVCVAQDTTELDFNGHAPDDVKCLNMADRRGLYDHSSVAFTPEKLCLGVLDVEFFDRSEDSLGKGSQRKSDPIEEKESFRWLQGYRRCCELASQCPETQVVSLADREGDIYDIFVEAEQHDNPADFVIRSKQVRCLPEKDDEAGGDSYKKIRSEVAKTDLVTTRQVELPATAQRAARMATLEIRAIRTKIKPPHARRSAIPEVTLSVVLVQEVDGPQDGTDLNWLLLSSLPIDDYRDVLRIVDYYVARWPVEMFFRVLKSGCRVEDIQLKTKARLIRALMFYKVVAWRIMFITFLGRECPELPCDVVFSDAEWKSVWKVAKESEPPKSAPELSQFIPVLAQLGGYNGRKHDGPPGMETIWRGTRRMMDFALAWQAFGPPKSSVH
>NZ_CP042914.1|WP_068130557.1|3720607_3723289_+|ATP-dependent-chaperone-ClpB
MAFQFDKLTVKAQEAVAAAQSKSSSAGNPEMDPLHLLLALLEQNDGIAGPLLSRTGADVAQLTSLATAEIDKLPKVTGGRQPQVGPALHRVLEAAAEKSKQMKDEFVSSEHLLLAMAETDNKAKNLLQLVGVDGNDLLTALAQVRGSARVTDQNAEDTYQALQKYGIDLVDLAQQGKLDPVIGRDDEIRRVIQVLSRRTKNNPVLIGQPGVGKTAIAEGLALRIVEGDVPNSLKNKKVVALDMGALVAGAKFRGDFEERLKSVLREVKDADGQVILFIDELHLVVGAGKAEGSADAANLLKPELARGVLRCIGATTMDEYRQHIEKDAALARRFQPVYVGEPNVEDTIAILRGLKPRYEAHHGVRITDSAIVAAAGLSNRYITDRFLPDKAIDLVDEAASRLAMEKESVPEPIDQVQRRIQQLELADRQLADEADASAVARRDAIREEMETLRSELASLREQWEAEKMGLDDVQSLRKELEQLDHQFRTEESELRNRQASGQPVAETEYQRLFELDQQRRQLNARLETLEDQVKEQDDDGGEDETSATRRLLRKEVTDEEIAEVVSAWTGVPVHRMMEAERAKLLVMEERLHQRVVGQDEAVTAISDAVRRSRSGLQDPNRPIGSFLFLGPTGVGKTEVCKALAQIMFDDESAMVRIDMSEFMERHSVARLIGAPPGYVGYEEGGKLTETVRRRPYCVILLDEMEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFTNTVIVMTSNVGSQVIQKIASEGGTQDELREAIEEPLRSRFLPEFLNRIDETVVFQPLHRDQIRDIVRIQLRHLTERLEEAGLKLEVTEAAVQQIANEGYEPAYGARPLKRVIQREVQNPLATALLRESYKEGTTIVVDYADDAFTFTAQEAPVEATAS
>NZ_CP042914.1|WP_148080696.1|3720223_3720580_+|hypothetical-protein
MLTLPDAYKDSGRVRKSQISNLKSQISNLRSEISDLRSQISDLRSQISDLRSQISDLRSQIPNPKSQISNPKSQIPNPSNNQTLASSATPYHSATPYQPPTGTPLASSSVRFQPCQFR
>NZ_CP042914.1|WP_068130559.1|3718084_3720034_+|molecular-chaperone-DnaK
MAQGEKIIGIDLGTTNSVVAVMEGSEPKVIPNPEGNRLTPSVVAFTDNADTIVGEPARRQAVTNPTRTVYSVKRFIGRRHNEVEGEEKMVPYGVTGAAGEYVKIKVGDKEHTPQEISAKVLRKLKESAESYLGHKVNKAVITVPAYFNDSQRQATKDAGQIAGLEVARIINEPTAAALAYGLDKKKDEKIVVFDLGGGTFDVSVLEVADSGDDDSSSRVFQVVSTSGDTHLGGDDFDEALIHHVADKFKAESGVDLRSDPMALQRLQEACEKAKKELSTLPQTDINLPFITMDSAGQPKHLTMSISRSTFEELIDDLVQRCKKPLMQALQDAGMQPSDIDEIVLVGGSTRVPKVRAVVKEVFGKEPHQGVNPDEVVAVGAAIQGAVLAGDRTDVLLLDVTPLTLGIETEGGVLTPLVERNTTVPVEKKNVFSTAADGQSAVTVRVFQGERKMANANRLLGEFNLEGIPPAPRGTPQIEVKFDIDQNGILSVSAKELGTGKEASVTINEAAGLDESEIEQMRKDAEANADEDRRQFELAEARNKANNMTYQLEKLMKDNDEKLTDDDKAPLEQAIEKVKKAAEGDDTAAIKQATDELEAASQAFTKVLYEKGGSETAGAEGGAAAAGSAAAADADGADDDAIDAEFEVKD
>NZ_CP042914.1|WP_084426000.1|3716672_3717833_-|prephenate-dehydratase
MTALQGKGPTAVTDAPPPNPSASPDRSAKPDKLASLDRQLIELLRQRRTVVQADLQKSPAELIGRMSRANEAIDQVLAEMLPATDSADADALDRAGVRDWLRHAASFCLRGGENQRVAFLGPKYSYSYMATTRFFGAAAALAPVQSIEAVFESVVAGDCRSGVVPIENSTDGRIVDTLGMFVVHRVHICGEVFLPIHHNLLSRSPREAIKQVCSKPQALSQCRHWLARHLPTAQIVEVASTTEAARIASEQPGVAAVAGREAGRQYGLDVVDANIEDSPYNVTRFAVLGNETIDATGRDKTTMLLQVAHKPGALADAMAIFKNNRLNLTWIESFPIVGENAEYFFFIECEGHRSDPPVAAAIDSLKKQAMRLDILGSYPAAQPASE
>NZ_CP042914.1|WP_084426313.1|3736143_3736848_-|methyltransferase-domain-containing-protein
MNTTLKDSPPAKPVKPAKPAGKPTAKQANPEHSRLYSKFIPAYEALWPLIVRRRVLRSIEALNITPNAKVLEVGIGTGMSMPAYPKHAEVTGIDLSDDMLAQARVKIEREGWDHINVQPMNAQKLEFPDQSFDFVTTFHVVSVVSDPQEMMSEIARVVKPGGSVLIINHFRSENPWVAKVIDRADPFTRHLGWRTNVSYGDVVGELPLEVKVQPKSSPFSLFTILHATRLEQAA
>NZ_CP042914.1|WP_084426328.1|3737057_3737864_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MLTLGNGVCGMASIAVAVSVNLPWENDQKLFIAGVLIFIGMVFDALDGSAARMTNQSSQFGAELDSLCDAITFGAAPAVILWRYSDVFPHRLSWAIGVVFTLCVLMRLARFNVETEEDDPHDGFEGLPSPAAAGTIAAFVISIPHLHSLATPDYGDRIQSLALNGLVAFQYVVPLTALALAYLMVSRFRYPHVVQQWLRGRKAPHQIGQALFAIGGVFLFNELALPLALCFYAFSVPLRYLAERIGLMRPAAPKPVVGGETESSPSDG
>NZ_CP042914.1|WP_068132369.1|3738077_3739694_+|L-aspartate-oxidase
MTPRYLVPFHPKQVPHHFVDLLIIGSGLAGLRAAHAAHPHQTVLLVTKDQLRESNSNYAQGGIAGVLGPGDDFESHVSDTLIAGGNLCDSEVVEMVIREGPRRIEELIEWGTKFDQTKGRLALGREGGHSHQRIVHAHGDATGREVMRAMIAHTRQRPNNLIWEQAFTLDLLTHDGRCRGALISRDGGPPTLVWAKQTILCTGGAGQVFRESTNPLVATGDGFGLAYRAGVELRDMEFIQFHPTVLYIAGSSRSLITEAIRGEGAHLIDVNGHRFMPAYDQRAELAPRDVVSQSIIQHMAETTHNCVYLDLSHLDRGEVLNRFPGIAATCAKFGLDIAQDRIPVRPGAHYMVGGVTVDRAGRTSLPGLWAAGEVTSSGLHGANRLASNSLLEGLVYGAFAGQGAAREAAEMPDTMTALPIECSPIKHKSQSLDFADIRASLKSVMGRLVGVQRNAAGLREAITTIDSFFAYVMPQQFQDETGWETQNMLLTSRMMATAALAREESRGVHFRTDFPSSNDETWRRHLAIQIDKCGGHPQ
>NZ_CP042914.1|WP_068132420.1|3739812_3741321_-|hypothetical-protein
MVRTTKRLSKPRRLLCVALTLASLVMGLPGRAIGQDAKPKEQDYYQITPFEIPQDVVLEVGGFQLMPDGRLAVSSRRGEIWMIDNPLAKVVPASSFKRFAHGLHEPLSLDYSDGWLYVTQRPELSRLKDTDGDGEADLFETVSDAWGISGDYHEYAFGSKADREGNRWVVLCLTGSFSSVVPYRGWCVRITKDGEMIPTTSGVRSPGGIASNAAGDIFYTDNQGPWNGACALKHLIPGKFVGHPGGFKWYELAEATIGPQPRKPKSDSRMMVEAAKIEQLEPPAVLFPYPQMGQSSSGIACDTTGGKFGPFENQLFVADQSHSTIMRVYLEKVQGHYQGACFPFRSGFGSGNVGVELTASGAMFVGGTNRGWGARGPKPFAVERLDWTGKLPFEIHQMRAIDGGFQLTFTKAVDRQSASQIDSYKMSTYTYIYREQYGSPPVDQTTPTITKAAVSEDGLSVTLMVDGLQVGHVHELHAAGVRNQEGQPLLHDAAYYTLNYLP
>NZ_CP042914.1|WP_084426311.1|3741396_3745026_-|DUF1080-domain-containing-protein
MSRYCSAFQPPQAVGIPVAWGLPIILALSFAWNLSALPLAAQTYATPEAAAQDPDFAVQGEYLGNQRGMQVIARGEGEFEIVIYEGGLPGAGWNRVAPRRVDGDADVVADLVESLELQRVERSSPTLDAPPPKGAIVLFDGSQQSLEKNWKPGARRSEDGLLQEGATSRETFGDYTLHLEFRTPFMPAASGQGRGNSGVYHQGRYETQVLDSFGLEGADNEAGGIYEHRDPDLNMCFPPLQWQTYDVNFTAPRFDAAGKKISDARLTVRLNGVVVQPDVAVPGTTRAAPLAENAAPGPIFLQNHGNPVRFRNIWLLPRDAQREAGRPRVPAFERFYASGIGDAVEGGQLLMAGLACTACHQGESTIPDKRGPNLTQVAARVRPDHLVAMIADPHGTKPGTAMPDPWNGVDEAEKQRLAKAIASYLSGELKITDRPGDSKAAQRGEQLYDSIGCRACHNGQSDNARSLATSVPLGDLGQKYTLDSLTEFLLDPHAVRPGMRMPQLANDRVEARDLACYLLRDVVLVPGGERFKYRLYEGSWDKLPDFDSLEPVDTGVMQDLDITAVKPKSNFGMVFETYFPVTTAGEYTFYIACDDGGRVTIGDKVVVVHDGIHPATEKSGKIKLPVGVHPVKIEYFEKAGQEELRLKIDGPDFKAADAGALMNGDPSGETLQELVESTFRPDPSLVEAGAAAFQQQRCASCHEFKDPGGKAVAASLTAPSLEHVASHLDQGCLADNPPAGVPDFSLSPSQREAIVAALATLDRPATPQQRTHLTMAAMNCYACHDRNGIGGPETAREANFQTTTQEMGNEGRLPPSLTGVGDKLNDAYVATILEQGANERPYMKTRMPAFRYQPLKTLHADINSLDRKTAADPVATNQSHELVVSNGRALVGDKGLACIKCHTYDNVGVEGIRALDALRWPVRLREDWFHRYLMDPQKYRPGTRMPASFVDGQSALKTIYDGDPALQINAIWKYLSSDDPKPPSGLVQGAIVLTPVDEPILYRNFITDLSPRGIAVGYPESVNLAWDAQAMGLVKIWQNEFIDARKHWVGRGPGQQAPLGDAVIRIDPDGPLAIVDSVDAPWPKLSARERGYQFLGYRLNADKQPVFRYRFNGNTVEDFCRPLGGSADQRGFERSIKIENPSPQGKRFFRAAVGDVETLPDGRFRLSTGGVLSIKGAGEPQWVTIDGKTELRFQLPAEQVVEITETIHW
>NZ_CP042914.1|WP_068132367.1|3745206_3746157_+|RDD-family-protein
MAEAAPLDTTIQVVTPENIAFEYQLAGPFRRIPAYVLDVLLYTMVLAFLVIIGLYIGFYSMSMLAMSVYAFIGLVLWFVLGWFYGALCETYFNGRTVGKWACGLRVISVDGRPLSGMQATIRNLLRVADLAPPAALGQFDSDVAPALAFPTALIGLMSVVMTQRMQRLGDLAAGTMVVVDEKSWRLPVAKVDDPRVAALASYVPGDYRISPTMARTLAAYAERRAYLTPARRREVARHLTDPLVDRFEFRPDIDPDLLMYALYYQTFLAGDSNTPPELGALAGFSPLRKDIGRELAPTPPPPPPPLAHSTEQGVNG
>NZ_CP042914.1|WP_068132366.1|3746153_3747107_+|stage-II-sporulation-protein-M
MNVATLVEKRRAQWAELETLCGGVVSPENAARFAALYRAACADLALASAYQLPPGTVTYLHRLVGRAHSRLYRSKRFDPMTWFDTIFVDAPRQIFSDPCVRIAAILFFGLFSLSAYLAYNEEAFPTYAEDIVGVATLEQMEDSFEPGLDGNFGHYISMAGFYIKHNTGIGLQCFAYGILLIPCVFILCYNAVALGASFGYMAREGVPGGDTFCEFVTAHGPFELTAIALSAGAGLRLGMGLFRTEGRTRVASLKANALQAVPIMVAAAIMFFLAAFTEGFISPSPLYYPLKAAWAIMSSGVLMFYFVVLGFPRGGLR
>NZ_CP042914.1|WP_148080291.1|3747129_3748086_+|hypothetical-protein
MSVRARSLAEIGDLSLLLVRRYSGALVVGFTLGLLPWAILNFLLLGYIPINEARDGIIDEQTYYERARYVWLMCALVFLQTPIAGIFTTYYIGQAVFEERPPWATVVKACRQSLLPVLWVLGTLRGPLVAMALLATNWGGEFAPGRELFWVLVIVLWAALIRSIRPFMPEILLLERCPLRAARGQETTITASRRSGLLHSPLSGDLIGRYLMTAIIVAALALGVFYGIMAVRGFLSTEWNWTLHLGSLPISDVQLLWLPLALWIVAGLSIFMRFLGYLDARIRLEGWEVELAVRAEALRQFGTESSPVLSTPQAENVA
>NZ_CP042914.1|WP_068132362.1|3748082_3748958_+|DUF4129-domain-containing-protein
MICFVTHFVATLARAWGRTSSPRSAASLLILLATALSAASQETSVPTAAEVESNIAESVGDTAWYDSETQQLRPVTVRERIDDASNRNSRWLPKPERVSRANPAAGGGGGGATGVGTSSASNIIGWVLMTFLAVLMIGVLVYFFSKGEMEVDIGAGKRRKTRHDPFDQDLTERMEQLPVEVRQQGSDMRGEAERRMRAGDFDTAIIYLFGHQLLQLDRYQMLRLSRGKTNRQYVREANASGESGRILQQTVDSFEASYFGRHAVTASRFEFLWKENERLEQLLRQHREAAA
>NZ_CP042914.1|WP_068132360.1|3748954_3750418_+|hypothetical-protein
MSSSKHWTWAAMLVGTLLLGCSRSGSLDTSFGVSHGRSGHNSINGFGSLREGYHAAGWESRTIGRLGDRMLRLDAMVWTPTEPVRIYSQETEWFEDWLSGGGKTLIYVLNDSGSEADYWRNAARLAPPAQRMEYRRRAARADFRRSEFLRTKSISPGNGWFQIEPLDYPQPLGIPQGRWAPRASQARSADTPPPPIEGLPYGDLQVLYQIQEFDSDKAPAPAAQPTVFGPGVSVQLNDDEAAYSETPVRLQNMLSSEQSLPVVTRITSSSWKKSQIIVVAGGSLLSNYGMTTEPGRHLGANLIAATGPAGEIGFLISDSAGVRISNAFTEENRATGMELLTVWPLSLVTIHLALVGLVVCLILAPIFGRPRNEQQPSQSDFADHIDAIATLMKRMDSDDYARHRISEYMRRVRGETTGPWVLEGAVNAPSQQRPAAVVPTAALPPSTGLPPTEPPPLATEPPPTPPSQTAQAPPQTPPDTAPRSNIE

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Crispr_ID: NZ_CP042914_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_13

4264425-4264522

Orphan

Consensus_repeat	Method
CACGGGCCAGGGGCCCATGCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_13

>merge|NZ_CP042914|13|4264425-4264522|CRISPRCasFinder
CACGGGCCAGGGGCCCATGCTACGAAGCGGTCAAGTACACGGGCCGGGGGCCCATGCTACGAAGTGGTCAAGCGCACGGGCCAGGGGCCCATGCTACG

>NZ_CP042914|13|13|4264425-4264522|CRISPRCasFinder
CACGGGCCAGGGGCCCATGCTACG	AAGCGGTCAAGTACACGGGCCGGGGGCCCATGCTACGAAGTGGTCAAGCG
CACGGGCCAGGGGCCCATGCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068133861.1\|4263066_4264197_-\|mannose-1-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|223906
NZ_CP042914.1\|WP_068133849.1\|4276542_4277940_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_084426553.1\|4261493_4262495_-\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP042914.1\|WP_068134049.1\|4278051_4279401_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|274667
NZ_CP042914.1\|WP_148080325.1\|4258857_4260129_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|225363
NZ_CP042914.1\|WP_148080327.1\|4268488_4273993_-\|DUF1416-domain-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP042914.1\|WP_168215710.1\|4266043_4268317_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|366374
NZ_CP042914.1\|WP_068133847.1\|4279504_4279855_+\|arsenate-reductase-(glutaredoxin)	unknown	unknown	gnl\|CDD\|239332
NZ_CP042914.1\|WP_068134058.1\|4260414_4261425_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|378117
NZ_CP042914.1\|WP_068133875.1\|4251686_4252076_-\|response-regulator	unknown	unknown	gnl\|CDD\|214376
NZ_CP042914.1\|WP_084426559.1\|4252518_4256838_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274225
NZ_CP042914.1\|WP_068133856.1\|4275408_4275765_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068133858.1\|4274060_4275080_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP042914.1\|WP_068133878.1\|4251238_4251673_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237864
NZ_CP042914.1\|WP_068133844.1\|4280052_4280430_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068133881.1\|4250678_4251230_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NZ_CP042914.1\|WP_068133870.1\|4257151_4258861_+\|DUF4173-domain-containing-protein	unknown	unknown	gnl\|CDD\|379362
NZ_CP042914.1\|WP_084426551.1\|4264546_4265818_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224423
NZ_CP042914.1\|WP_148080326.1\|4262708_4262915_-\|small-basic-protein	unknown	unknown	gnl\|CDD\|275006
NZ_CP042914.1\|WP_068133853.1\|4275971_4276559_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274375

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068133861.1\|4263066_4264197_-\|mannose-1-phosphate-guanylyltransferase	gnl\|CDD\|223906	COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane].	4.20247e-140
NZ_CP042914.1\|WP_068133849.1\|4276542_4277940_+\|hypothetical-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.9802e-07
NZ_CP042914.1\|WP_084426553.1\|4261493_4262495_-\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	5.28319e-67
NZ_CP042914.1\|WP_068134049.1\|4278051_4279401_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|274667	TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. [Protein synthesis, Other].	0
NZ_CP042914.1\|WP_148080325.1\|4258857_4260129_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	1.46429e-107
NZ_CP042914.1\|WP_148080327.1\|4268488_4273993_-\|DUF1416-domain-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	2.51835e-47
NZ_CP042914.1\|WP_168215710.1\|4266043_4268317_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	1.56128e-59
NZ_CP042914.1\|WP_068133847.1\|4279504_4279855_+\|arsenate-reductase-(glutaredoxin)	gnl\|CDD\|239332	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.	5.52231e-55
NZ_CP042914.1\|WP_068134058.1\|4260414_4261425_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|378117	pfam09084, NMT1, NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	2.64471e-34
NZ_CP042914.1\|WP_068133875.1\|4251686_4252076_-\|response-regulator	gnl\|CDD\|214376	CHL00148, orf27, Ycf27; Reviewed.	7.10071e-30
NZ_CP042914.1\|WP_084426559.1\|4252518_4256838_-\|hypothetical-protein	gnl\|CDD\|274225	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP\|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.	1.02081e-64
NZ_CP042914.1\|WP_068133858.1\|4274060_4275080_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	5.68262e-45
NZ_CP042914.1\|WP_068133878.1\|4251238_4251673_-\|hypothetical-protein	gnl\|CDD\|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	0.000143547
NZ_CP042914.1\|WP_068133881.1\|4250678_4251230_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	1.06294e-10
NZ_CP042914.1\|WP_068133870.1\|4257151_4258861_+\|DUF4173-domain-containing-protein	gnl\|CDD\|379362	pfam13777, DUF4173, Domain of unknown function (DUF4173). This domain of unknown function contains multiple predicted transmembrane domains.	5.29561e-23
NZ_CP042914.1\|WP_084426551.1\|4264546_4265818_-\|hypothetical-protein	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	9.1922e-07
NZ_CP042914.1\|WP_148080326.1\|4262708_4262915_-\|small-basic-protein	gnl\|CDD\|275006	TIGR04137, hypothetical_protein, Chlam_Verruc_Plancto small basic protein. Members of this protein family are commonly found next to markers of rRNA processing such as YbeY. They are extremely lineage-restricted, in the Planctomycetes and Chlamydiae/Verrucomicrobia group. Since classification is based on rRNA molecular phylogeny, this provides additional support for a role in rRNA metabolism. This small protein, about 50 amino acids in length, is rich in basic residues, a third line of support for rRNA interaction.	1.77134e-11
NZ_CP042914.1\|WP_068133853.1\|4275971_4276559_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274375	TIGR02984, Sig-70_plancto1, RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are apparently found only in the Planctomycetaceae family including the genuses Gemmata and Pirellula (in which seven sequences are found).	1.83668e-11

>NZ_CP042914.1|WP_068133861.1|4263066_4264197_-|mannose-1-phosphate-guanylyltransferase
MLHAIIMAGGSGTRFWPASRRETPKQLLRLSGDRTMIQSTADRLGDLVPDARKLVVTNESLVEAVRQQLPELPAAAVIGEPCKRDTAPCVGLAAVLIAAEDPEATMLVMPADHVIRADSDFQDAVRHGVQLLEADPGRIVTFGIAPSYPAESFGYIERGQAVDSKTASDGENGSGGENGIESGSTAAYQVTRFREKPDAATAAEYLRSGRFYWNSGIFLWRAVTIIEALAEHEPAMLKRLQTIGQAAGSEEFEQVLQREFTAIEGKSIDYAVMEHHDNTVVLEAPFQWDDVGSWQAMARLNPADEQGNTVLGQHLGLDTSDSIVYGGQDHLIVTIDIDDLMVVHTPQATLVAPKSSEQRVREVVKKLEKGDFERYL
>NZ_CP042914.1|WP_148080326.1|4262708_4262915_-|small-basic-protein
MTMDRSLKVQAGAIKTRNVMKRAERIARLQELDRWTEDSNVVGMPKVRVVKVSLKKKKKVKKEDDDKK
>NZ_CP042914.1|WP_084426553.1|4261493_4262495_-|acyl-CoA-desaturase
MSISDIEKTDTYDDSLDALDPGYSSEAEVADPQRLPLPDATQPMQVMWEYVAVLSLVHIVALMVFVPWLFTWSGMVLAIAGHFVFGMMGITIGYHRLLTHRGFTCPKWLEHTLAVLGMCNLQDSPARWVAIHRLHHQHSDHQPDPHTPLASFLWSHVGWVVCRHRDLDRTSRYERYVRDLLRDPFYLKLERKDGWFFVFLIHGILITAAGALVGWLVGGSGAEALRYACSWAVWAVAARTVFVLHGTWAVNSITHVSGYRNYETRDKSRNNWLVALTSHGEGWHNNHHAQPRAAAHGHRWWEFDMSWRVIQALELMGLAKNVVRPKSVADSDT
>NZ_CP042914.1|WP_068134058.1|4260414_4261425_-|ABC-transporter-substrate-binding-protein
MNLSGRLPLVVLCVLIAISHLGCSQHQPATGDAGEALQPVVIQLNWHAEAEHGGAYAALASELYSDAGLDVEIRPGGPATPVAADLESGRCQFAFANADDVALYRQQGAGVVAVLAAMQDHPRCILVRRDSNITDLNQLAGLTLQRQPGRPFLEFMRRRGLLDDVQEVPYTGSVAGLVTSKDIAIQAYSFAEPLLAEQQGVEVTPLMVSELGWNPYSSVLVTTDRLIAEDPQLVRKVVEATRQGWVQYLEDPQAANELILKANRQGMTAEALAYGAKQMTELAMPGGAAPETVGQMSLQRWQTLVEQLVELGLVEPENVQAEACFDSQFLSPPAAP
>NZ_CP042914.1|WP_148080325.1|4258857_4260129_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MANANPTEGDFEEVDDAPQIEPELNPPETFAQALMEIAAEQRASDLFISDEMDATVIRMRRMGRLKVIRKLQSSYGRRLLNHFRALAGIDIADLARPADGRARFLLDGNREVDVRFGVMPTACGQDMAMRLFDHSRGLVGLDDIGFLDEERVIVERLLTAPSGLILVAGPAGCGKTNSLYAFLNHLNNGQRKIHTLEEPIEYRLPGMHQSQVNVRAGLDFADLLYGCMRQSPDVIMIGEIRDTRTADTAIRAGTGGQLVLATVHAQTAPTAVQNMLALNANRHFLADSLVGVLNQRLIRQLCPHCRVQHEMADPNNGGKQIYFQPGSCDECREEGYIGMTCLPEILEVGKIMTHAIAQGEAADELGRIAVEQGMRKLGDAAMLRITQGIVTPQDAGYVISDPRVRAIATHAPNQTDSEQADVA
>NZ_CP042914.1|WP_068133870.1|4257151_4258861_+|DUF4173-domain-containing-protein
MPEPLPHSQAEPPTDSRTPGGVSATPPTGAPGSKGPGTVEVARPLWDESPTGWREWLAVVLLVGLCDLTIYRGQGYAGYSLLFAAVPWLLVAGGWRPHFRTATWVTGSLLLLVALRLLWSGSSLAVLVGFALVPAFAMALGNRLPYVPEWCRFTARMWVAPFDRLARYHHQSLQKRASDRRPSRWMEVTLPLAALLAFGAIFVFANPSLVRYVTDTAEKIGLELQRWFDHFSMLEVLFWAVTAWLGLALVRPRFLRRLPAVDAESVVDAKVVELQPGETAAGESRLFRPYRNTLLTVVGLFAVYLVFELTTLWFREFPEGFYYAGYAHQGAAWLTIALALATATLSLIFRAEILRDPRRPVLTRLAWIWSIQNFLLALSVFNRMHIYVDFNGMTRMRTIGLFGISTVVVGFVLVLIKISRGKSFLWLVRSQLWALSFAVILYALLPVDMLVHRYNVRRVMNGDVAAAVQISVHPIDDEGYLVLWPLLNCRDPLIENGIRGMLAEKSLTVGRSQSRRRRARRGWTTYQMSEQRLGQQLEANRAELAPLLSDETARTEAIRKFHDYVYQWY
>NZ_CP042914.1|WP_084426559.1|4252518_4256838_-|hypothetical-protein
MKHLLMLLLSGITLGMFSPMDSAADAPNTKVALADGDRVVLLGDGLIEQEQYSGWIETALSAASPAKSLSFRNLGWNADTPSGASRLGLSLVQAGHEPAGESQRLLRAQLELTQPSVLIIGYGMASALESGAEGLETFRDDYQRLLDTAQDINPDVRFVLLSPLRHTDGDPPLNATLDSYTQSIAQLARKNDALFIDLSAVGNESQYRKDPIHLNEAGYRQAAIAISKAVAGDSDAWQTSANTDALRQTIIRKNVWWFHRSRPANMAYVFGFRKREQGQNAVEIPKYDALIAAEESRIEALRPLQPVELEVPEPTTKSQYAEFTPQPKPEFTVADGWEVNLWAENPQLNKPIHMNFDPQGRLWVASSEAYPMIEVGQSAPDKVLILEDTTGDGRADKSTTFADGLLIPTGLAPGDGGVYVAQSTDLLFLQDTDGDERADLRRRVLSGFGTEDTHHNLHTLLWGPDGRLYMNQSVYTRTDTETPRGVVRLKAGGGFRYDTRSMRMQTFFNGLWNPWGHQFDAGGQSFMSDGAGFDGLAWVFPGATFKPTPHARRLLPLISPGRYPKFASLEILSGPSFPRDWQGSIITCDFRANRVTRFSVSDQESGFVTAQEADLLRTATSTFRPIDVKQGPDGALYIADWSNPIINHGEVDFRDPRRDRWHGRIWRMTWKGASPQAKTNLQQLDNTALLDNLLSADRYQRDQSRRVLIERAQDDADPIRNVLASWTAAHAEPSARLQSLWMHQALNLKNVDLLDEVLAASSAEHRAAAVRVLSDWADPASDLSEPLATADAFPRYQRLVLDAHPRVRLEAVRGLDKFSGADAVQIALEALNEPLDTFLEFALAKLVDDSSASVMAAIESGTWTADDAAGAKRLEFVLSAVEPSKARSYLSKYVANNPLDANGKGPWIELIGLTGGPQTLQILLNQTVDKRFDEATTLRALRGLIEAQRLRKQRPGKQLQRIGGLLQSDSVAVRHTAMELVATWKLASLVEALEAIAIDQQTEMPSRKFAVAALRGVGGAKSADALQRILTHTKAWQLRSDAVVALAALDAGRAAPLFYEVLDDSRDEAAAVALWRGVLAMKDAGQTLAGAIPEKGISEASAQAGLRVLRDGGREEPGLLSALKPHAGEAMESEQWTKERIAAMVDQVQQSGDPHRGEAIYRREKLQCVLCHAVGGVGGQVGPDLTSLGASAPVDYIIESLFDPNAKIKEGFHSVVVATEEGQIVTGVVVESTDEELVLRNASAELVRIPVADIVLEKNGPSLMPTGVIDRLKPAEQVDLVRFLTELGKPGPFDAAKGDVARTFEWLAGTHRLEQEGPERIISGQHTAGWKRLDTLVDGSVTKSALEQRTAQYGLGTLVNIYLRTQVSVANDGDVQLNVDSPKPVAMWIDGQRVKLSDKGQTVDVKLEGGEHNVLLRLDARDIPARLRLQSKDVAFATE
>NZ_CP042914.1|WP_068133875.1|4251686_4252076_-|response-regulator
MDQSKILVADDSGTIRTVVRRILTTAGYDVVLACDGRQAVDQCSAEQPNLVILDIQMPEMDGYAACQEILKLTDGGACLPIVFLTRDTANHLDALGSELGAYLPKPVREDKLLATVDSLLHSHAMPQAV
>NZ_CP042914.1|WP_068133878.1|4251238_4251673_-|hypothetical-protein
MNLDDFNTSGPTARASQCVAELGAQASRPLQPGRTELEAFIAATRRELYALAESLEQAVQEPPAATADAPTQPNEPAARVNEPSAPIPPNSDAALQLQAAPLPTPPTPLPTTAETVAAADGDEDPLARLNAIKLRLAQQLENTL
>NZ_CP042914.1|WP_068133881.1|4250678_4251230_-|chemotaxis-protein-CheW
MNSTETAIPADLHPPGDAPAVVKYCLFRSGDSWFAIPAIAVHEIAACPALVPVPHSGPALAGMCHLRSEFNPVIALNPLLRSDEASGVRGDNQLLVIQSSSVWSLLIAEAAGIVSLETLVTPESRGDDRIQTPVIGTSMFRDHIVHVLDPGGILRLAQQTLESLWNVAGQEVAASPTHVRSQG
>NZ_CP042914.1|WP_084426551.1|4264546_4265818_-|hypothetical-protein
MSRFTRLGYGCLLIGLCSLACADEPWRADPKLVEAKMKNSRGFNYREADVPQYVLPDPLQTTRGQALTAEHWPQQREQLLQTFRDHVYGNRPETAYRVQFSTVAQRSGVFDGTVDAREVKITVLAGEGEYSFSLLLFVPRRPNSGDAAKLPAIVHLNNRDFPTLDSAINESSEFWPVRAICDEGFVAAAVSTHEIDPDKAGRFEDGIRGFLSKASGASGEKPADPHAWAALSAWGWGVSRAVDYLLTLPTVDAERIAVVGHSRGGKAALWAAAEDTRIAIAYSNNSGCGGAALSRRRFGETVARITTAFPHWFCDRFATYADREQDLPVDQHQLIALLAPRAVYVASATDDLWADPRGEYLSLIHAAPVFQLLGHQAIDNRQMPAADQPRYVGRTGYHLRTGGHGLTPSDWQNFMRFIKQLED
>NZ_CP042914.1|WP_168215710.1|4266043_4268317_+|prolyl-oligopeptidase-family-serine-peptidase
MATKSFFLLLHRFERVSTVMIQPLILFRAALLLTALSCADALQAQSSATKPSAEPPPLSVKTLYHPEHKYDFDGPSLPAAQWSDADPQSQLAVRRGKQWMRHNLETGREQPWKGAAPNNTGLQRLKNGLAIVTADEQTQWITRDARSWRHPTLSPDGKHVAFVEANDMYIVDIESGQRLRVTSNGSETRLNGVLDWSYQEEIYGRGNFKAFWWSPDSQRIALLRLDIRDLYEYTLADSRTPRGSTLTARYPKVGDPIPVAELWVTDLQGELTPVHRPNEDEREQLIVRVGWHPDSNRVAYQVMNRVQSWLELRLSPALSGETNNSEPTEPRVLVRDESATWVEVLGEPRWLPSGDFLWLSDQPIGRRRVWRVSSDGRLRIAITPEDMDVREIEFVSPDGQTIYVTADRQRGSIGQQVYRVDVSSDDSEDGRSTASDTLPAQLSSVTAEPGWHVPTFSPDGRWMLDQFSKLEQPPSLRLVDLRPDAGAKVVRTLAEPGKLRANTLPVEWLTINTSDGVPLPAYLIRPANVQRGGTPVLIETYGGPQAASAVDRWTGPRYLYRQMLAQQGIAVLVTDNRSSAGRGIADTWAVHRQLGVVELQDTLAAVGWLKQQPWVNADAIGLRGWSFGGFLTAYALTHCDAFAAGVAGGSPTDWRNYDAIYTERYMGLPSDNPEGYNQTSVNLAAQDLHGALLLIHGELDDNVHPANTLQLVRALQAAGKPFEMMLYPGAQHGIRDAGQEYHMMDMVTRFLHRQLKP
>NZ_CP042914.1|WP_148080327.1|4268488_4273993_-|DUF1416-domain-containing-protein
MWNRKFSRIRKRPTAPMVRRSMLAEPLEPRVLMAADPIHVGVVYIETDYLESDADVGSDSQPDRFILSFTGGAEGTELTEFRINTDKAGDGLSIGDPMFDTEQGGRGKRGSHGFEVFKVVSDDAVQVEATVEDGGQELVIHLEGFHAGDRLEFTLDVDEILSNASDLETFNRKLDVINSGQEFEDSILDATFEAPHFETAHADALFLNEFGDPGSQYGLDLPADESDDVDSRPNRTAAAVASATQTPKPISIAGTVWVDSDLDLLRDANEEGLAGVQLTLLQLEPVTGQFVDTGFRATTDGLGRYQFDTDLGLMPGTFRVVQTQPDGYFSVGSVPGFIDGSSVGSSLSADILTGILIPKGDQHAVQYDFAEAAPASVSGFVYRDDSDDGIRDASEPGIGNIRIRLIPENTLGSQATLIQTTDANGFYRFENLSPGQYRIEQIDQPSDLSDGLDTAGTVNGIVVGAANNPGDSIDAVVLAGSQQGLEYNFGELPLGSISGMVYLLGPGEVCDGYDPGVDQPLPGVRIVLQNDLGETITETVTDADGQYRFDQLPKGNYTVVEFTPAGLLDGMAMPGRIGNVTVGDGVGGGRIERLLLTAGAEAVEYDFCEAAPASVSGYVYHDRDDDGQRDSGEEAIADVIIELVDGNGTVVDTTRTAADGSYRFEDVLPGTYSIRETQPDGYYDGIDTAGRVDGQPTGVAENPGDVIGLVALRQGQAGVEYNFGELRPASLSGMVHADTNQNCIADPGEELLSGVVIQLYDRDGNRVAETQTDVNGRYRFENLVPGRYTVIELQPEGYFEGGQMAGSAGGDDSQVNRIADVDLGSGEVAVEYNFCEHPPAEISGVVFADRDEDCVFDANELPIASVRVDLLDGAGQVVATTTTDANGRYTFSHLPAGVYTVRETQPMGYLHGGQRAGSAGGNDSVADIISGIPIGFGDRLTDYNFCELEPSSLSGFVYVDRDADCVFDNDEPPLAGVEVQLLNEAGEIVARTTTDADGNYRFQNLRPGQYSVRELQPAGYFQGGQQVGSGGGIVLGDDHLGQINLGPGQTLVDYNFCELEPSSLGGVVYVDRDADCVRDTDEPPLAGVEVQLLNDAGQIVARTHTNAAGQYRFDNLAPGRYSVREVQPEGYYQGGQMVGDGGGEVLGDDHLGNIDIGPGQTLSHYDFCELEGGSLSGRVWSETDLDQTFDDDDNPIAGVVVELIDANGSVVQRTTTDAAGLYEFTDLAPGVYGIRETQPSGLFHGGQKVGSLGGTVADDDLLTEITVSGGTHGSEYNFPEVPPATISGYVFQDGPALSTGTAPAPEDLRDYRDGIRGTNDKPIGNVRLELRNVLGQPFTADRALPGIYGDGFIQVTTDANGYYEFTGLRPGTYHVYEVQPEDYIDGLDTPGSTGGVAVNPADIPDDIELQFVVQTLSASDATDPGDDAILNVSLTAGGHSSENNFSEIIVLQPPPPLPPIDHPQAEVPQLEAGPLPAYDRVASFAVPLYTPRPAFYDLAYPVSWHLSVINGGAPREDEGQNGMVQKASSQEDTHFDESKHRKGRWSLVTRDGERLELSDAIMLGEEGAVPLSGDFDGDGRDEVAIFVGGQWFVDLNGNGIWDSGDLWISLGTELDRPVVGDWDADGKDDIGIFGREWLRDPQAIANDPGLPAPSNRHYSRPKNLPPVEPEATDGVREMKLSRKPIRADLIDHVFRYGQHHDTPVAGDWNGDAHGTVGVFRAGVWRLDEDGDGRWAGNDREFIFGSPGSKPVVGDWNGDGIDDLGVVEGDLWILDSNGDRKLTAADQRLHIPADHPDAQPIAGDWDGDGRDEPGWYHTGAEPSDEEPPQEEERAA
>NZ_CP042914.1|WP_068133858.1|4274060_4275080_-|WD40-repeat-domain-containing-protein
MLQKAILSPLLLIFSVSAAFAQVPPAAEVLRLKPQDGHPSSPVITALAIDPEGEFLAAAGDDHLIRIIDLATFSEQYVLRQHYGWVRTLDFRSDGRRLVSAGNDGQVVVWDRKNDWQIKQSMPDAPPMACVRFSPVGGILAAVGFDPQLFLLQPGTTRRPVLECGCNDLRTVAFSDDMRLVVAAGRSGDAHLFDPGTGQPAGHFELHDGRIRDLIFMPGSDLMVSVSEDRKVVVFDSLGGEVLHSIPVPGCKLFTVAALDSTRVAVGGADNLVRIVDISRGTILHSLPGHTGSIAVLKANGKYLFSGGFDATIRRWPLQAILQQPRTVQRPDETPSPKR
>NZ_CP042914.1|WP_068133856.1|4275408_4275765_-|hypothetical-protein
MTNSQRLAAVRQTLRAWYQEQQPEAPWEVAESIMIRDGFYCGRNFRFGTLRAVWFVEEEQVKIYQADGSLLHAFKTDVLETGEPTVKLFEADGEESSEPETSVEQTPAAEEAPARRAA
>NZ_CP042914.1|WP_068133853.1|4275971_4276559_+|sigma-70-family-RNA-polymerase-sigma-factor
MTDLETLTDRLRRGETRALDELWTRFGPDLRRRARTRLRQMGIASQAESMDVCNAVLVDLARQGQIQLERPAEVIHYLLRAIDNQVRDTFRTLSRQRRDFRRNESLPVEEHPLRAMQTTPSQHLLRSEVINRVREELGQQHAPIVDMVLENFSWAEIGERMGIAPDTARMRYRRAIRVVKEAWLAGQESIDDEAN
>NZ_CP042914.1|WP_068133849.1|4276542_4277940_+|hypothetical-protein
MTKQISPQLDAARRADWLRRQRLSDVDTPLRVWLSDCRLNDEEILELVCVDILSRTRATRPVDLEAYFTDFPALAEQPEAVLDIIDADICARREHRLLVPSTEYSKRFPALATRIARLIEIDTLETSLDEGTDFSFDEVAEPGKAPAERSPKNAAGQRAEQVGSVDAATAGGEFARYCSVELPADVRITGLLALREDVACLRASSSDSRGVLIKVVSKRRLTDSSLSDRIGDLLERLAKVTHPAWVPPDVIAENASQLVMVRPWVAGTLLTNRYLQNSPPTRNAAPPPPRLGLSPVLRELADLGYALAALHQQGLCHGALHPGNLFRDHDGNLRIVDAGFGFPDVGTQWDWRLPAAPLAGGQTTADDQAGQAFDAASLAKIIASALAPYVWTSEASVDTPLQRFVRWCQASGRAAPPPQCEVSRIADNLLALADGRPLKLPGSTGDARHSWWSRLRGREESDSRG
>NZ_CP042914.1|WP_068134049.1|4278051_4279401_+|ribosome-biogenesis-GTPase-Der
MAVPQVVVVGRPNVGKSSLFNWLARRRLAIVDDHEGVTRDRLVTLVEHEERFFELVDTGGMGVVDVDDLTADVRHQIDVAIQSADVIVFVVDIRTGVMPLDEEVGERLRSLDVPVILVANKADNETLDERADEFYKLGRGRLVCVSTQQNRNRDDLLELIIDRLPGGGEERPQADPQMKVTIVGRRNVGKSTFVNTLAKAERVIVSEVAGTTRDSVDVQFELDGQRFMAIDTPGLRKRKSVRTDLEFYSTHRAQRSVRRADVVLMFFDANESVSKVDKQLMGYVMENYKPCVFVINKWDQLVGKVTTDRWVRYLRHQFPTLVYAPIAFITGQTGKNVKQLLNHSQMLYKQARTRVSTGQLNRLVHAAIDQHPPPMYQNRRPKVYYATQVSTEPPTVVLMCNEPKAFANDYRRYLLGVLRDHLPFGEVPIKLYLHRRNRNEETPEGAESR
>NZ_CP042914.1|WP_068133847.1|4279504_4279855_+|arsenate-reductase-(glutaredoxin)
MTTIFHNPRCSKSRAAVALLESRGIDFEVVKYLEQPPSEKELRRIVKLLGIKPEQLVRKGEKLYKELALGEQTLSDKQWIATLAAHPKLIERPIVVHGDRAAIGRPTENIEELLDS
>NZ_CP042914.1|WP_068133844.1|4280052_4280430_-|hypothetical-protein
MLYALPSLLSLLFYAAVLIVLAVRPSDGSRAKLFAILGTLLLLINAMGGWALQVLISQFVGPEQIALAFGVFAILHSLLYFAGLSLVFVAVFTGRRPAASNAIVDTPGGHISSAASDNPYVPPAN

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Crispr_ID: NZ_CP042914_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_14

5180866-5180961

Orphan

Consensus_repeat	Method
CCCACGCTCTGGCGAGCGTAGCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_14

>merge|NZ_CP042914|14|5180866-5180961|CRISPRCasFinder
CCCACGCTCTGGCGAGCGTAGCTACGGGCGTTTCGTAGCTACCGTCGCCAGACGGTGGTTGCGCGGCCTTCCCACGCTCTGGCGAGCGTAGCTACG

>NZ_CP042914|14|14|5180866-5180961|CRISPRCasFinder
CCCACGCTCTGGCGAGCGTAGCTACG	GGCGTTTCGTAGCTACCGTCGCCAGACGGTGGTTGCGCGGCCTT
CCCACGCTCTGGCGAGCGTAGCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068135394.1\|5167755_5168520_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259883
NZ_CP042914.1\|WP_068135431.1\|5193870_5195124_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379807
NZ_CP042914.1\|WP_068135407.1\|5179487_5180792_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_CP042914.1\|WP_068135425.1\|5191725_5192700_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381389
NZ_CP042914.1\|WP_068135400.1\|5172859_5175934_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293749
NZ_CP042914.1\|WP_068135435.1\|5195143_5195950_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236216
NZ_CP042914.1\|WP_068135389.1\|5164870_5165272_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP042914.1\|WP_068135398.1\|5170591_5172214_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NZ_CP042914.1\|WP_068135421.1\|5188914_5191587_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_084426953.1\|5167095_5167620_-\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|183954
NZ_CP042914.1\|WP_068135439.1\|5196050_5196869_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP042914.1\|WP_068135428.1\|5192743_5193781_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176222
NZ_CP042914.1\|WP_068135396.1\|5168978_5170388_+\|sulfatase	unknown	unknown	gnl\|CDD\|293751
NZ_CP042914.1\|WP_084426927.1\|5165692_5166859_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP042914.1\|WP_068135418.1\|5188267_5188903_+\|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl\|CDD\|254323
NZ_CP042914.1\|WP_148080393.1\|5178042_5179308_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|239796
NZ_CP042914.1\|WP_068135527.1\|5180982_5184693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237259
NZ_CP042914.1\|WP_084426930.1\|5185002_5185953_+\|DUF1571-domain-containing-protein	unknown	unknown	gnl\|CDD\|377879
NZ_CP042914.1\|WP_068135413.1\|5185963_5188126_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_068135403.1\|5175955_5178019_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068135394.1\|5167755_5168520_+\|hypothetical-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	1.37075e-17
NZ_CP042914.1\|WP_068135431.1\|5193870_5195124_+\|hypothetical-protein	gnl\|CDD\|379807	pfam16257, UxaE, tagaturonate epimerase. This family consists of uncharacterized proteins around 500 residues in length and is mainly found in various Bacteria species, such as Thermotoga, Paenibacillus and Rhodothermus. A newly recognized enzyme from the galacturonate utilization pathway in T. maritima with tagaturonate epimerase activity.	2.20382e-58
NZ_CP042914.1\|WP_068135407.1\|5179487_5180792_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	3.75933e-151
NZ_CP042914.1\|WP_068135425.1\|5191725_5192700_+\|aldo/keto-reductase	gnl\|CDD\|381389	cd19163, AKR_galDH, L-galactose dehydrogenase (L-galDH) and similar proteins. L-galDH (EC 1.1.1.316), also called L-galactose 1-dehydrogenase, catalyzes the oxidation of L-galactose to L-galactono-1,4-lactone in the presence of NAD(+). It uses NAD(+) as a hydrogen acceptor much more efficiently than NADP(+).	2.37938e-151
NZ_CP042914.1\|WP_068135400.1\|5172859_5175934_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP042914.1\|WP_068135435.1\|5195143_5195950_+\|SDR-family-oxidoreductase	gnl\|CDD\|236216	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.	5.2272e-135
NZ_CP042914.1\|WP_068135389.1\|5164870_5165272_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	7.28769e-34
NZ_CP042914.1\|WP_068135398.1\|5170591_5172214_+\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP042914.1\|WP_068135421.1\|5188914_5191587_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.98838e-96
NZ_CP042914.1\|WP_084426953.1\|5167095_5167620_-\|DUF664-domain-containing-protein	gnl\|CDD\|183954	PRK13291, PRK13291, putative metal-dependent hydrolase.	1.99962e-18
NZ_CP042914.1\|WP_068135439.1\|5196050_5196869_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	6.91528e-35
NZ_CP042914.1\|WP_068135428.1\|5192743_5193781_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.44432e-149
NZ_CP042914.1\|WP_068135396.1\|5168978_5170388_+\|sulfatase	gnl\|CDD\|293751	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase). N-sulfoglucosamine sulfohydrolase (SGSH) belongs to the sulfatase family and catalyses the cleavage of N-linked sulfate groups from the GAGs heparin sulfate and heparin. The active site is characterized by the amino-acid sequence motif C(X)PSR that is highly conserved among most sulfatases. The cysteine residue is post-translationally converted to a formylglycine (FGly) residue, which is crucial for the catalytic process. Loss of function of SGSH results a disease called mucopolysaccharidosis type IIIA (Sanfilippo A syndrome), a fatal childhood-onset neurodegenerative disease with mild facial, visceral and skeletal abnormalities.	3.2524e-161
NZ_CP042914.1\|WP_084426927.1\|5165692_5166859_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	5.25092e-07
NZ_CP042914.1\|WP_068135418.1\|5188267_5188903_+\|RNA-polymerase-subunit-sigma-70	gnl\|CDD\|254323	pfam07638, Sigma70_ECF, ECF sigma factor. These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.	7.07362e-46
NZ_CP042914.1\|WP_148080393.1\|5178042_5179308_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	0.000336438
NZ_CP042914.1\|WP_068135527.1\|5180982_5184693_-\|hypothetical-protein	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP042914.1\|WP_084426930.1\|5185002_5185953_+\|DUF1571-domain-containing-protein	gnl\|CDD\|377879	pfam07608, DUF1571, Protein of unknown function (DUF1571). A family of paralogous proteins in Rhodopirellula baltica.	4.7559e-77
NZ_CP042914.1\|WP_068135413.1\|5185963_5188126_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.12917e-89
NZ_CP042914.1\|WP_068135403.1\|5175955_5178019_-\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.67264e-17

>NZ_CP042914.1|WP_068135407.1|5179487_5180792_-|3-deoxy-D-manno-octulosonic-acid-transferase
MWFNAVYLLLIVAASPLLLFRSLRHGKYRQGWQAKLLGRTGLPPSDRPRIWLHAVSVGEVSLLRRLVTRLEREYPGHPCVISTTTVTGYELACKHFGSQRVFYCPLDFSWAVRCAIAEIQPAMLVLAELEVWPNLIAGASRQNVPVVVINGRLSESSYRGYQKLGHLVRNTFSRLSLVACQDETYAQRFIDVGVPAEAVQVTGSIKFDDAPTDRQTPQAMACADRAGLRPWHRVWIAGSTQAGEETVVLNSYQQLRERFPNLRLLIVPRHPQRFDACAAEIESQGFHCIRRSTLPDDFAAEPLSADSVFLVDTIGELRDWWATADIAFVGGSLGSRGGQNMLEPAGYGAAVCFGPNTRNFRDIVSHLLAADAAVVVDDGEALTAFVERCLSDVPAAEQLGIAAQAVVQQHRGATEKTLRLIAPLLSGGQQRVAA
>NZ_CP042914.1|WP_148080393.1|5178042_5179308_-|PEP-CTERM-sorting-domain-containing-protein
MTEIGCEKVSQMQRIACSQILIAMALLFSPAVANAGVFVDFTNFDSRMTELAVSAGVTGFNAGELSTLETGIVSVLENAYQDFIGLSFSTVDPGGTRPVVTFGTAASPGSLGVANHIDFLNRVSGDTARVFSANFDFVVDEFSGNNNRAEQISQLTAALGGTAVHELGHNLGLRHHDAYGDLTYTGSPINTGGVQNGNWMATGSTGLGEQGRQVPRTFSTNSLVKLAYAEGTLDNNPVAVQEAGDAGDSIGSAMAVSFETIPVANRFGEVVIGEISTSSDIDFYAVQLAANSLFTADINVDYAAGFPFDNVNTTLSLFDMAGNQLATDDVSVYSGNTFGSGGFGDGFDPALFNVNIATAGTYYVQVASEGSDIGDYQLLMHTNSSTHMVPEPSSIVLFGMFAGTVCCSVRRRRSASKELRI
>NZ_CP042914.1|WP_068135403.1|5175955_5178019_-|hypothetical-protein
MAFHSRTILGYRNPYLWLVLGCVAAYGSSLLNGFAWLDESEILRAEYRVESAQDFSAVFSQPLDEYSFRHEGKTTTQGGYWRPLYALSISLDWFFWGENATLFHFENVVWHILVVLSLYIAGRELVFNSTDSKRERALAKASVFWASMLFGVCPLGVHSVSWISGRKDTLCAFFAILALIALIRFARQGRRWWFAVCLGSLMFALGFKELAVALPIVATCYLIVQWATLKREERWRWGLGLVGTWLTVGGYFQMRNFVLGGIGLDMDAGANPWYLKFGNAVRLLMHYGLTVVWPHPIVLSDRWDLALRWRAVETLRTTLVAAVAIALAIWRGKAKRIVLIGFAWFAIWLLPALGFLPLRHLRAERYLYPASWGLMLAVCGLTIWAVQGIAKQPSKTGHRWWEIGGLLGLHVPREIGRVPLHGVLLGGYVMVLVVLTNLENRFWKNDQTLFTRALQIDPDYLEGRVGLAHHFIKNSEFQAAIDTLDELLTMVECEEVSKSGYWSPYVVYMNRAAALRQLNRIEEAKANFLEALRYQPGLSAPCFGAGLCAMDLHEYQEAEQYFSKVVLAEPDSIAAVGNLALSKLYQNMPAEAESLLNPWRDSPQMDAVTLRTYGSALLLQQKYSAAIPIFERSIEQDPEGASDWAKLAWAHWGALHASEANTALTRARRIDSADATVQYVSGLIPQE
>NZ_CP042914.1|WP_068135400.1|5172859_5175934_+|sulfatase-like-hydrolase/transferase
MRLRDLPYCLATSLAVLFSAAAAWSQDRPNIIVILADDLGYSDLGCYGGEIDTPHIDALAAGGAKLTQVYNSARCCPSRASLMTGLYPTQAGIGDFTTRKPNPSRGPGYLGRLREDCVTMAEALRPSGYGCYYVGKWHLHNETGPIRRGFDEFYGYTFDHSHDQYDADYYQRLPQGRVKEIDPAADKFYATDVFNEYAVEFIKQGQQADKPWFLFLGHSSPHFPVQAPPERAEKYDDTYRRGWDVLRSERFARMQTLGLVNGEHWKLSPREIVPVDRDDIANGFSGQQNPAWDSLDEDRQRDLARRMSVFAAMVEGVDDGVGKIVDHLKQTDDFENTLIVFLSDNGACYEWGPFGFDGRSRRGETILRTGDDLRNIGGRGTHQAYGSGWANLGNTPLRMYKHFTYEGGISTPFIAHWPAGIGRRDDWVREPAHMIDVLPTLLDAARADYPKRRDEHPVQPLEGKSLLPALRGETMAARTLGFDHQAAHALRQGDWKAVYSKRMPQTLRWELYNLAEDRCEQNDLAAEHPQRLVAMVDEWERWATRVGVTWAPYATDPKAALPAAEAPSTGVDGPPSAATEGPADQPNIVLVFIDDMGWGDFSCFGNQDAGTPHIDRLAREGIRFEQFYVNSPICSPSRTAISTGQYPQRWRITSYLNNRKDNQRRGMAQWLDPKAPMLARSLQQAGYATGHFGKWHMGGQRDVNDAPPITDYGFDESLTNFEGMGPKLLPLTLKPGQTEPDKIWQRAEILGEAYRWMLRSEITTGFVDAALPFIDKAAASGKPFYINLWPDDVHSPFWPPVDTWGDGSKRRLYLSVLEAMDQQLGRLFERIQGDPKLRDNTLILVCSDNGPELGAGTAGPYRGYKTHLYEGGIRSPLVVWGPGIVKRHNHIDGQSVLSAIDLTPTLLKLTHTPPPEGVTFDGEPLVDTLLGDGGSREAPIFFRRPPDRNAFYGDEDLPDLAVRSGKWKLLCEYDGSEAELYDLSIDDAEANNVAEQNPDVTAQLIKSVIDWHRSMPPDNGPELE
>NZ_CP042914.1|WP_068135398.1|5170591_5172214_+|arylsulfatase
MPHFFDLASVPIRLAFIGFACIFGASCCPAGERPNIIVIMVDDMGFSDIGCYGSEIPTPHLDALADRGVKFSQFYNTGRCCPTRASLLTGLYSHQAGVGWMTTNQHAPGYLGRLNDECVTIAEVLKPAGYFTAMTGKWHVGFKQGVTPWGRGFDRSLNLPAGGLHFSNQTGSKGGTKLFLNGQQVARDDPRFDPPWYGSDLWTERGIEFIDEALAKDQPFFWYLAHVAPHFPCMAPEATVAKYRGKYMAGWDQLREQRYQRQIDAGLIDKSWTLEPRPEQIPAWDSLPFEEQKRYDHMMAIYAAMIDEVDKNIGKLVAALEQRGQLDDTLILFLADNGGNAESGVKGRYNGEHPGDPHSDVFIGRCWAHLNNTPFRKYKHHNHEGGTASPLIAHWPAMVKPRTESDDWITTPTHVIDIMATCVDLAGATYPDNFNGNVIKPAQGQSLLPLLTGEGEFSSRPLYWEHEGNAAIRVGDEKLVRLGRRGKWELFDMQLDRTEQHDLAAEQPDKVTALAKRWRKWAKSAQVLPKPPAKSPRGAK
>NZ_CP042914.1|WP_068135396.1|5168978_5170388_+|sulfatase
MNARLYSIIALLLLVGSTARAEQPNIVFIIADDCTFRDIGCYGGQADTPHIDALAEQGMRMTRCFQAAPMCSPTRHNIYTGLYPVRSGAYPNHTRVDPGIKSVVTYLRELGYRVAQTGKTHVGPATVFDWEKLGRGKTLAFDKMNNLMAECKTAEQPFCLLVCSNEPHTPWNKGDPSKYPADEIILPPYFADTPQTRADMARYLAEITYFDGQVGRTLQLLDDQGLSDDTLVIVVSEQGSAFPFGKWTCYDTGLQSAFIARWPGQIEPASISDAMIEYVDILPTFIEVAGGTPDPVLQGKSLLPVFAGAKSHKKYVFGEMTTRGINNGSEHFGIRSVRSEHYKLIVNFTPEMPFQCAASESKTFRSWQAAAEAGDEHAADLVHRYTHRPAIELYDVQADPYEMKNLAGDPRLADVRRTLRSELDGWMIACGDKGHATERAAYEHMPGRNPPGKKGGRRGTQYTPRKEKL
>NZ_CP042914.1|WP_068135394.1|5167755_5168520_+|hypothetical-protein
MRYLFWHLLGTIACVQISAAGDLTLRFQYEGEPPPPKPIKVDRDVAFCGQHGLVDESLLVHPKDGGIKNVVVYVYTGRGGSEIDSVPHQEKTHTLDRKNCRHEPHILLMQAGDTLKITNSDPVGHFAAVSVFNNTPSGLLVPPSQGRTMELPKPEPGPMPVQCVIHPWMQSYVVVLDHPYVGVSDEHGKVAIKDLPDKELVFRVFVEAAKGALDTVTVDGKPQQWTRNRFRYNIKPGNNDMGTVKLTAKHFGQR
>NZ_CP042914.1|WP_084426953.1|5167095_5167620_-|DUF664-domain-containing-protein
MVVCYDVAIRYPSPYPLEELVPQTEYVQAYAAGPAALRASAERFSSAQLDATPIPGTWSARQVVCHIADFEIVYADRMKRVIAEHEPTFFGGDPDEFAAGLAYEKRDVQEELAVIDAVRQQMTRILHTLDEDAFSRIGNHNEAGPLTLAALLQSVTAHLPHHVAFIDAKWNALQ
>NZ_CP042914.1|WP_084426927.1|5165692_5166859_-|VCBS-repeat-containing-protein
MRKLIPATLLLSTLLASPALAQHPIKFEVQLLTVDSNEGCDVADFDGDGKLDVVAGRNWYRNGDWKPRPVRLIEDRNGYVRSNGEWAYDVNGDGHTDVVSMDFFEGGVYWYQNPGPDGLAKGHVWNKHLLADTGYGTNEASYLVDVAGDAKPEWVSDQWNKTNPLMIWSFDSAEDNKPILTGHLVGASTGHGIGFGDLNNDGRDDILVGTGWYECPEDDVLNQRWKFHQVWELQGACPMLIHDVDGDGINDVIVSNAHNFGIHLWRGLGKGDDVEQKFEETLIDDSFSQAHCLHMADLDGDGQPEIITGKRVRAHNGNDPGGKEPPIMRYYVWNAKTKAYEGHTINRGEAGIGLQIRTADIDADGDLDIVVAGKDGTQILFSQLKKTQ
>NZ_CP042914.1|WP_068135389.1|5164870_5165272_-|GntR-family-transcriptional-regulator
MQIRIVDDGIPIYRQIVDQIRDRVLSGSLAGGDELPPIRTLATQIAVNPNTVARAYRELETEGLVEKRRTTGTFVSLTATSESLAARRRRLREPIDSLIAQACGLGFDEEQLVGEIRNRFASRHTPPSGAKRS
>NZ_CP042914.1|WP_068135527.1|5180982_5184693_-|hypothetical-protein
MTALERIWEILGLIFGGMLSSIERGITAIFGSSNARQINRFRERVEKINALEERFAALSDEELRAQTERFRERLREGETLEDILEEAFAVAREGGKRFLSMRHYDVQLIGGMVLHSGAIAEMITGEGKTLVATLPAYLNALEAKGVHVVTVNDYLARRDMEWMAPLYMNLGLTVGNIQSGMSIQEKQAAYACDITYGTNNEFGFDYLRDNMRPASRGDQRFPVEVQQSQGPLHYAIIDEVDNILIDEARTPLIISGPADQDLGKYAEADRVAQQLRKEEHFTVDEKQHNVTLTDEGVREAEKLAGVESFYTAGNMQWPHLIDNALKARYLYKLDVNYVVKDRQIVIVDEFTGRLMEGRQWSDGLHQAVEAKEGVPIKQETQTFATVTLQNFFKLYNKLSGMTGTAMTEANEFWKIYNLDVIAIPPNRTLERIEYPDVIYMTEKDKFKALAEDIERTSKWDVLVMKDGSELWGTIDSENDESIAFTPKGSKAKEQVPRSKVVDVERARRPVLVGTVSIEKSERLSSLLDMRGIQHQVLNAKQHGREADIVAQAGRLGAVTIATNMAGRGTDIILGGNPENMAWAQLQHKYPTRLEVPDEEWNALVKEIDEREQMTAEGKIVREIGGLCVMGTERHDSRRIDLQLRGRCGRQGDPGSSRFYLSLEDDLMRIFAGDFVKSVFERLGMNEGEAIESKMVTRRIEAAQKKVEERNFEIRKSLLEYDEVMDEQRKRVYGYRQNILDGHSCRKMILSQIEQQIDSHVEEFLDEHYGPTSYANWAGGQLGCQLEPRDYRGLDPKTADQYSREQAERAAEAAVAEALEENLPSEMDEEEWNWQALATWANKRYGTQFRDRDLKKLERIDLTDKLVEAAHQAIAKVELDEGAPLLENDFGLRKLCGWIRNKFGIEATPAELEQLEERHEVKSLLFERASTAYGTKEAEYPILTGISAYTYKEGNSIILDREGLAGWIEGRFGAKIPHDQLDLNRENLKNQLLPYSLQANEASVAKHEEAKQKVDDLFGDADPDTSALLAAGNESLDEMAAWLEAELSYQLPKEELGRMDRDAMMLAVEGAVDDRFYPEMRRMERQVLLSMVDGAWKDHLLAMDHLRSSVQLKSYAQLDPKVEYKREGMRMFEDMWSSIGERTTDLIFRMESFNEDFIRSTWVNASAHHAPAEPAQASSSADSSANNAQQRAADEAGGESRRKPDPVRNTEPRVGRNDPCPCGSGKKYKACCMRKMV
>NZ_CP042914.1|WP_084426930.1|5185002_5185953_+|DUF1571-domain-containing-protein
MDRTIETHIESGTAETSRPRRSLWRTGLLSLALLSLGFVIGRSTAPLSAPPGAVPTPTGSGSSPSDPSAAETVSVTRQATLEEVLQMARQGLQQLEQNIDDYTATMVKQERIGNTLREPETMNMKLQTRRVQDGQTVRPMRVYLHFSAPASMAGQEVIWSEGANDGKLIAHKGGLWNVMRASLKPDSFLAMTGNRYPITQIGMTNLVRKLIARGELDQQTASATVSITSGHRVGDRICNLIQVRHAEPNGRPDDFSLAEIAIDAERQIPLRYTAFGWPAEGTEAPLLESYTYLDVELNVGLTDQDFDPDNPAYNYP
>NZ_CP042914.1|WP_068135413.1|5185963_5188126_+|serine/threonine-protein-kinase
MDAPRREAASRPGPSPGNLAAGLRGLPLAMLTGLLLIFLIGLAVGLSVRRSAERLLAAELSTIRDVDVAAIRLWLGEQAATASELAAKLADSQIAGDLLLTTTDQRPQDASPASAPLQSLAAHIPASDRYIGWALLNLDGRVVAASDARWTDGELPLSPHAWRQVGTGRATVSHPFLTPQPLSTQQRTFPAGSAMMAALAPIHRQSRILGYLALLLDPADQLAELLNAAQPGDTGETYLFDRQGRMLSASRFPNQLRELGLLSRDGTADGTLDVLVRDPQVNLTRGQTPDTPPLARPLTAMAEDATRGGTGVDARGYNDYRGVPVVGAWTWLEQYQLGVVTEIDTAEAHQPWRILRLAFWTMTGTLSAIGVMLVAHNVHSQQQQRRTAADDSQPRRLGGYELGEALGSGGMGTVYRGHHQLLRRPVAIKVLEAPGTDTRAIERFEREVQRTSELQHPNTIQIYDYGRAPDGTFYYVMELVKGLDLAQLTETYGPQPPARVVHILTQVCGSLAEAHDRGLVHRDIKPANLLLSSPAGVCDYIKVVDFGLVKDVSGVDSNAVTKVESLTGTPLYMSPEAIRDATQVDARADIYSLGAVGYYLLSGHHLFDADAPVDICMLQVGQMPPRPSKRLGRELPEDLQDLLMACLQKSVNDRPQSIAQVLEGLQRCGSNGQWSIDDAEHWWTAVHETERVNRNPLASLLEKDPVIADRVRRGSRTVAD
>NZ_CP042914.1|WP_068135418.1|5188267_5188903_+|RNA-polymerase-subunit-sigma-70
MPRSTDNFAELIERVRQGDSQATTELWEQYYQRLVRVAARRLPASLRRVGDEEDVALSAFHSFIAGIQHDRFPDLSGPDNLWGLLITLTGRKAHAHLRHQTRQKRGGGQVRGESVFADVEDIRNGGIGGIAGERAPADLQAELAEACDVLLNQLPDEQLRQIAIMRMEGFLVDEVALRMDLSKRAVERRLQLIRKIWSEEVEADESPGTPS
>NZ_CP042914.1|WP_068135421.1|5188914_5191587_+|protein-kinase
MSLSQLSAAELARIDSICLRFEAELKAGQDPCIQKWMDEHPDVDREVLQAELAAVRAELSEVGQRSTGGPEGDPCREGVAGLEPGESVIRPGAQLGPYKVESLIGRGGMGRVYLGLDTRLDRAVAIKVLADDWAQRQDRVERFERESRAVAAMRHPNIVSLFDIGSHCGRPYAVMEWLDGETLRDRIKRGPINAAETRHIGAQAAEALAAAHANGIVHRDLKPENLVLIGPLGKCPDPAPTAIVKLLDFGLSRASQEDLDGSQDPTASGIVMGTAGYMAPEQARGEKATFAADIFGLGCVLHECFYHRPPFPGKTLAESLGAVLHADPKEDAEIAASDPDLAEVIRRCLRKQPEDRPRSAAEVSRWLRSRTLLVTATDSGHRDLTVKKLEAGETLELPSHPHLAPALPGPPTTLSRRRLGMMLVAAAAVGGAAWWRWGGESPRIESLAVLPLEVKESQSRQPLGARTLSDEEMVAAMLVNQLARQQSLKVVPFRPIRASSPQYAQVGKELGVDGLVLVQIVGQGQQRRVHLQLVEADSSAVLWGKEFQYSEGASLLTQRDSAARIAQEIGIQVASIRHGALTEEGAAFSCLVRGEARLDPDSEDGLRGALGCFDHARQVDPLFAEAHAGFALSAMTLAALSPPEESQELVVEARSAMLKALELRPDEGTTNLAAAMINWRDDRNFESAERHFQKTLKEMPNSWHAQHEYALFASARRQQTEAIAAIRRAVTLNPLSQTLRVDEARLNWFDGQPQLAKPAVDAMLADADKREKAAGLAIDQLEQTEDYDAAAALQDMTAVAGRADLYFAQRQAKLDEYPYGPFGPTMNQAILDARLDRIDDTYLAELISLRPTTLVLLMSAHPAFAGYRDRPIAEQVDARLPRAYGRSPQA
>NZ_CP042914.1|WP_068135425.1|5191725_5192700_+|aldo/keto-reductase
MQTRPLGRTGIDLSILGFGASSIGQEFRQVDMGEALRAVHVALDGGMNYIDTAAYYGRGMSEIMLGRMLPEIPRDRYFLSTKLGRYAPQHFDFSAKRVAESIDVSLERMRIDHIDMVFCHDIEFVDTKQIYEETLPALRREVEKGKVRFIGVSGYPMQIFKEAIAKADVDVLLTYNHYTLQNDMALQLVPLCEEKGIGLINAAPFSARLLTNAPLPQWHNATPEVRKVAAAAAAHCESKGSDIAKLALQYSVANESFASCVTGSANPDRVSQWLQWLDEPMDETLVAEVLEILKPIHNWIYTVGLPENEDPINEGGANEGIAKS
>NZ_CP042914.1|WP_068135428.1|5192743_5193781_+|zinc-binding-alcohol-dehydrogenase-family-protein
MRAISLLEPEKFSHVDVQAPASPGPGMALVKTHRMGICGTDLGGYLGKFPFFGYPRIIGHELGVEVLEIGEGVGNVSVGDRCSIEPYLNCGSCYACRRGATNCCQTNQTLGVMCDGGLCERFVIRADKLHASRTLRYEQLALVETLAIGCHAVDRGDNGEGDHVMVIGAGPIGLSAIEFARLSGAQVTVVDMVESRLEFCRQTYGIENLIRFQSPEQVSEEVQRITGGDRYAVVIDATGNPHSMTGAMHHVAQTGTLVYVGITNQNLTFEHATMHKPEMTIKASRNALPTDFARIIRLIEEGTIDTEPWITHRVSFDNMIAEFDSYTRPETGVIKAVVDVSGEQQ
>NZ_CP042914.1|WP_068135431.1|5193870_5195124_+|hypothetical-protein
MKKISKYTFGVGDRFAHQAKAQLQACIQATAAGAEVVPVWNKSHREHQTVGSQPDSVRQAADAAVAELGWTKPYHVDADHINLSTVDGFIASSDFYTLDVADSIGQPASPADVTAFVDRFPQLVGTVTIPGIDSPFEISRQQVEQIAGKYLLAVQQAGEIYRHIAAQKGADEFITEVSMDETDSPQTPPELLVILAAIADQQIPIQTIAPKFTGRFNKGVDYVGDVQQFEQEFSDDLAVIDYCVKEFGLPETLKLSVHSGSDKFSIYGPIRRCIAKFDAGLHIKTAGTNWLEEVIGLAEAGGDGLELAKEIYAQALAHKDALCAPYATVIDIDDAKLPSADEVNGWSSEQFVSALRHDQSNPQFNDNLRQLIHVGYKIAAQLGDRYLDMLDKYETVIAKNVTENLYDRHLKPLFLDR
>NZ_CP042914.1|WP_068135435.1|5195143_5195950_+|SDR-family-oxidoreductase
MDLFDLKDQVAVVLGGTGALGGAMAAALGSAGAHVIVAGRNQQRGQECVDRIEKAGGRAAFQAADALDRDSLQAAREAIAEQFGTPAILVNAAGGNHPDATLPPGSEFSKLPLEAWNRVFDLNLSGGVLLPTQVFGEAMLSAGRGSVINIASMAGMIPLSRVVAYSAAKAAVINLTQFLGREWATSGVRVNAISPGFFPAEQNRKLLFKDDGSYTERGGQIIGHTPMARFGDPRELAGAVIWLASDKASSFVTGQNIVVDGGFSSTTI
>NZ_CP042914.1|WP_068135439.1|5196050_5196869_+|sugar-phosphate-isomerase/epimerase
MKSCITVSLVEEARGGPFVLWDGLRAACELSARLGYDAIEIFAPGPDAVDPEELKNLLADHSLELAAVGTGAGWVKHQLQLADADATKRQQAKDFVRSMIDFGGPFGAFAIIGSMQGRHDATVDKPTALGYLAEALEELGEHAAQYNVPLIYEPLNRYETNQVNTVQQGVELLEGLSTGNVKLLCDLFHMQIEERNVAEALKTGGQHVGHIHFVDSNRRPVGEGHMDYRDIIAALRSIKYEGYLSAEAFPYPTPQIAAEQTMRAYDYWTSAT

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Crispr_ID: NZ_CP042914_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_15

6173225-6173391

Orphan

Consensus_repeat	Method
AGCCAAGTAGCATGGGTCCCCGGCCCGTGGGCGATTCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_15

>merge|NZ_CP042914|15|6173225-6173391|CRISPRCasFinder
CCCCAAGTAGCATGGGTCCCCGGCCCGTGTAGCCAAGTAGCATGGGTCCCCGGCCCGTGGGCGATTCTTGCCCGCCGCCCCTTTTTCGATGCGCGGTCACACGGGGCAGGGGCCCATGCTACGACAGAGCCAAGTAGCATGGGTCCCCGGCCCGTGGGCGAATCTTG

>NZ_CP042914|15|15|6173225-6173391|CRISPRCasFinder
CCCCAAGTAGCATGGGTCCCCGGCCCGTGTAGCCAAGTAG	CATGGGTCCCCGGCCCGTGGGCGATTCTTGCCCGCCGCCCCTTTTTCGATGCGCGGTCACACGGGGCAGGGGCCCATGCTACGACAG
AGCCAAGTAGCATGGGTCCCCGGCCCGTGGGCGAATCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068141082.1\|6167302_6169234_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_CP042914.1\|WP_068141070.1\|6169351_6170518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141847.1\|6150176_6151007_-\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|187630
NZ_CP042914.1\|WP_068141081.1\|6174158_6175724_+\|terpene-cyclase/mutase-family-protein	unknown	unknown	gnl\|CDD\|238362
NZ_CP042914.1\|WP_148080739.1\|6191467_6191710_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141064.1\|6178998_6179541_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|335420
NZ_CP042914.1\|WP_068141066.1\|6177584_6178793_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP042914.1\|WP_068141849.1\|6153491_6153983_+\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP042914.1\|WP_084427732.1\|6176258_6177431_+\|porin	unknown	unknown	gnl\|CDD\|369446
NZ_CP042914.1\|WP_068141057.1\|6186885_6189006_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP042914.1\|WP_148080468.1\|6189173_6189542_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141846.1\|6149008_6149980_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187566
NZ_CP042914.1\|WP_168215727.1\|6160935_6167175_+\|tandem-95-repeat-protein	unknown	unknown	gnl\|CDD\|333740
NZ_CP042914.1\|WP_148080467.1\|6179765_6185987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141054.1\|6190169_6191423_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP042914.1\|WP_068141861.1\|6153986_6155876_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP042914.1\|WP_068141068.1\|6172584_6173223_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141069.1\|6171364_6172471_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP042914.1\|WP_148080738.1\|6151636_6153229_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP042914.1\|WP_068141060.1\|6186406_6186865_+\|response-regulator	unknown	unknown	gnl\|CDD\|381108

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068141082.1\|6167302_6169234_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_CP042914.1\|WP_068141847.1\|6150176_6151007_-\|enoyl-ACP-reductase	gnl\|CDD\|187630	cd05372, ENR_SDR, Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR. This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.43052e-120
NZ_CP042914.1\|WP_068141081.1\|6174158_6175724_+\|terpene-cyclase/mutase-family-protein	gnl\|CDD\|238362	cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system.	1.29646e-08
NZ_CP042914.1\|WP_068141064.1\|6178998_6179541_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|335420	pfam03652, RuvX, Holliday junction resolvase. This family of nucleases resolves the Holliday junction intermediates in genetic recombination.	1.29658e-52
NZ_CP042914.1\|WP_068141066.1\|6177584_6178793_-\|hypothetical-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	0.00339843
NZ_CP042914.1\|WP_068141849.1\|6153491_6153983_+\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	1.27079e-16
NZ_CP042914.1\|WP_084427732.1\|6176258_6177431_+\|porin	gnl\|CDD\|369446	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like. bbp2. BBP2 is a family of putative porin proteins that are likely to be outer membrane beta barrel proteins porins.	2.04864e-64
NZ_CP042914.1\|WP_068141057.1\|6186885_6189006_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP042914.1\|WP_068141846.1\|6149008_6149980_-\|SDR-family-oxidoreductase	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.02152e-157
NZ_CP042914.1\|WP_168215727.1\|6160935_6167175_+\|tandem-95-repeat-protein	gnl\|CDD\|333740	NF012211, tand_rpt_95, tandem-95 repeat protein. This 95-amino acid repeat occurs in tandem in proteins that may be several thousand amino acids long.	7.066e-26
NZ_CP042914.1\|WP_068141060.1\|6186406_6186865_+\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.65311e-43
NZ_CP042914.1\|WP_068141054.1\|6190169_6191423_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	2.27129e-05
NZ_CP042914.1\|WP_068141861.1\|6153986_6155876_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.25389e-32
NZ_CP042914.1\|WP_068141069.1\|6171364_6172471_-\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	1.40811e-176
NZ_CP042914.1\|WP_148080738.1\|6151636_6153229_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	9.49928e-142

>NZ_CP042914.1|WP_068141068.1|6172584_6173223_+|hypothetical-protein
MTNSDKPDSDTESVQSRGTAMSASTPAMRTGWWVLFALGLLAIGVIGAVLGVKMRRTQTAQTSLFFGPQTISALQSSTSLRLHLDDGESSASAASQPVDLSDIPGVGHLRHALLDERHYDWTTQQGEDIDSLVIAASQPDGSAGEWCTIELEGTPPGHAPIEPTQIRVELTEGWVGIPGGNGRVRLRERVAKALRSQVKMISNVDTARADAP
>NZ_CP042914.1|WP_068141069.1|6171364_6172471_-|3-dehydroquinate-synthase
MSESPLQEVTVPLSPDAYSIFIGTDWWSGLGGKIRETLSDMSHAMLVYDSEVRSSWAEPLAEQLRGAGVRVDLVEVLSGENSKSVQRLEQIWEQMRVDRADRQSVVIAVGGGVVGDLAGFAAATFNRGVRLVQVPTTLLSQVDSSVGGKTGINLPDAKNIVGAFWQPSLVLIDTATLSTLPPRTFHSGLAEVAKYGVIADAQFFGWLEQHAEALAKADHEAVRHAIAVSCQTKADVVVADERETSGRRATLNYGHTFGHAIEATAGYWKFLHGEAVAIGMQMAAHLARALGRVDDEFVQRQHDLLLRLQLPVCWQDAEPELMLQTMQSDKKVAHGKLRFVLPTRIGHVELVGDVDEKLVINAINACKI
>NZ_CP042914.1|WP_068141070.1|6169351_6170518_+|hypothetical-protein
MSDPSAENPYQPPPDVDETAPLEAGTVIEYDAAATKDDLRRALRSGPAMVWDVILLVTLGLGVTAVVLSQMIGGGWRAGWGNSTFTFLILLIPTLLAGFGLYRKWFAAEIYLKHYPRALQRRTGQLTEEGFLLCSEEGKAWWPHTSLLRFKQHRDQLTICYDLRGASQQILPERGFSDPLAAAAIFSRHAQRNPYPPLGVFDHRALQPLSVPIRVGPMPEGAIRFSGTLQSGDLVDTPLLSLQLHSLLKSLGILVVLHFAALAVYHVYGRSYAVLAILPLALLDVWFALVFYRTWRPRSVAQQPLMLISGWLDEDGLTLLNDIEQSVTRWTQFSECEISDSKVWLRFDSGSDLLLLLHRRFFDSDADWQATQQLLQTHVGPARPPTTP
>NZ_CP042914.1|WP_068141082.1|6167302_6169234_+|biosynthetic-arginine-decarboxylase
MSLATASRSWSTAESTDLYDVERWGGGYFSINSGGDLRVHPSRDADQSVGLKDICDRLKQRGYDLPVLLRFNGILRDRLREMHDCFAQAISNTEYQGDYRCIFPIKVNQQREVIEKLVEFGTELGAGLEAGSKPELMAVAAHCHPDMPIVCNGFKDDEFIKLAMICQKVGRTVIPVVEKFTELERILVHAEALGVRPNIGIRVKLASRGQGRWQSSGGYRSKFGLTVSEVMRAIQLLEARGMADCFKLLHFHLGSQITNIRPIKSAINEAVRIYCELHRRGAGLEYLDVGGGLGVDYDGSQTNFESSMNYTTQEYANDVVYQIKTVCDEAEVPHPMIFSESGRAVAAHHSVLVFGVLGVTSQGEPNGLPTSIPDDFEQPVIDLWNTYQEINVRNAVESFHDAQASLDMAMNLFATGYLPLEQRVVAENLFFGSCQRIRRCLQDMEYVPEDLGNLDRLLSDIYFCNFSLFQSVPDSWAINQLFPIMPIHRLNEAPTRHAVLGDITCDSDGKIDRFTDRRSVKNTLQLHEFDGSPYMLGAFLVGAYQEILGDLHNLFGDTHAVHVDIDPTNGNPIIRDIVAGDTVREVLGYVQYDERDLVRRVQTIVEQAVGEGRIDDTQAGQFLRFYEQGMAGYTYLKGPEENA
>NZ_CP042914.1|WP_168215727.1|6160935_6167175_+|tandem-95-repeat-protein
MPFQRRSRRDNAQRNRSASARRRRRRVLRLESLEGRRLLAVFTVNSLQDSADAIPGDGIAADSSGQTSLRAAIMEANAFDDGGPDTINVPAGNYLLTISGVEEDAAATGDLDITDDVNIVGADASTTIIDASQLAARDRVLEIHRGTISDRVAFRLEGVTVTGGVAAGEARLADHGGAVFVDFYSDVDIINSVVTGNSAPRASSTSDFANVYGVGGAISNSGNLQIIGSRFEDNHSSNAGGAIYVGGSGATTSIRDSTFINNSSRDGGAIESRYITTITNSTFQGNTAFTRAGTSGTGGVIKQIGGELTITNSTLSGNRSSSGGALAISGTLHAINSTIVNNEALNYGGGVHGSFSNTTLHFENTIVAGNTAATNGPDVYTAATVQSGGHNLIGDVTGSTGWVSSDLQNVDPELLALADNGGPTPTHALSPTSPAIDAASNNLPATDQRGVVRPQGNGGDIGAFEFITAGNQPPVAVDDAFTVEEDGTLLVAGGPTDAVLHYTFDEASSGSISAADTGTVPAADGTFVGAATRVGNTPGGISEGALDLTAGVNQNSFVSDGDAQKIDDLTEFSTTFWLNLRDAPQDEDALLSDRPSFPADPFTTGWELRIVGSPAGEAPTADAFWIEFETAHVGSGLANAQASLKGPYSADDEWIFVAFTLNANGTASWYEADETGAVRQMGRTNFGPYLPTDLDNPTDLRIGGSSEHPDEDRTPPAWMDDVRIYDRVLGAEELESIRAANLTTSTVGVLANDSDPDGDPLTAVLVAEPQHGTLNLAADGSFQYTPDANYHGPDRFSYRASDGTYQSEIAIVSLTVTPTQDPPVANDDVATTDAGVAVEISSLSNDTDLDGDTLRIVSVTQPSNGGAEINAAGTLTYTPDLGFSGNDQFQYTIDDGNGGSDTALVTVTVLPGNRSPVANHDAYSTEQGVPLELDIELGNAALDQQSLARDHVISGFHYDLQQQIRAGVSGRLDSVDVYLGSNTTAGADVTVRVYRGAPWQTGTAEFETLVRTTTSMAGDWLTIDTSNSDIDLAAGELFTLEVTGTSSGSNQFLYFGMSREPLSNDSYREGQLWSDGNPHEPTGVGFDLTFRTRMRALPDQSGVLSNDVDNDGDTLTAVLVAGPSDGTLSLQPNGGFTYTPDAGFAGTDTFTYQADDGLAVSNTATVSITVTPSNRPPVAEDDRASTDEDQLVVIDILANDSDPDGDAITLLRVTQPTHGTTVVNADSSVTYVPNDNFQGSDEFLYSISDGNGGSNSAVVTVTVNPVNDAPTANDDSASTDEDTAVTINVLANDADIDGDSLSIASVGQPANGTASVNEDGTITYTPAANFNGVDGFSYSISDGNGGSDSAVVTVTVNPVNDPPTADDDTASTNEDTAVTIDVLANDADIDDDSLSIASVGQPANGTANVNDDGTITYTPAANFNGVDEFSYSISDGNGGNNSAIVTVTVNPVNDAPTANDDTASTDEDTAVTLNVLANDADIDGDSLSIASVGQPANGTASVNEDGTITYTPTANFNGVDGFSYSISDGNGGSDSAVVTVTVNPVNDPPTADDDTASTNEDTAVTINVLANDADIDGDSLSITSVGQPANGTATVNDDGTITYTPAANFNGVDEFSYSISDGNGGSDSAIVTVTVNSLNDAPTANEDTASTDEDTAVTINVLANDADIDGDSLSIASVGQPANGTATINDDGTITYTPAANFNGNDEFSYSTSDGNGGSNSAIVTVTVNPVNDAPTADNDSASTDEDTAVTINVLANDADIDGDSLSITSVGPAANGTAIVNNDGTITYTPAANFNGSDEFSYSISDGNGGNDSAIVTVTVNPVNDSPTANDDTASTNEDTAVTINVLANDADIDGDTLSITSVGQPANGTATINDDGTITYTPAANFNGNDEFSYSTSDGNGGTASAEVLINVRSGSLEVDYQLKSNRINLSSHGKISITLWGSAELAGTEIDASSVMFADAYATKWRVADVDGDGIDDLVLKYDIDDIRDALFAAYNESDSNSRTRTVASSLTGRTNHDEAIMGFEMVDVYLAKQKDDRDDRDDRDDRDDRDDRDDRDDKDDKDDKRDKRDKGKGRR
>NZ_CP042914.1|WP_068141861.1|6153986_6155876_-|TlpA-family-protein-disulfide-reductase
MPRKAALLVVPLVVSLTPALQLFAAPPAPKAALGLKPVQDSVAYQLVPESQVESCKVRDLDGKWAGWEVTTADGTILRRFADTNRDKKVDLWCYFDQGVEVYRDVDSDFNGKADQYRWLGTAGTRWGMDEDEDGKIDAWKRISAEEVTAEVIGALAAGDAARFSRLLLSPEELSSLRLETEEAGKLGAQVKRAATEFAAFAKRQKQVGSGAQWVQFAAATPGVLPAGALGLTSDLVVYENAVAMFESRGESGQVVVGTLVQVGDAWRLIDLPQIVGDDMVARSSGYFFTPLRSTENAVPAGAEGEAAQKLVAQLEKIDQALSQAKASELPRLNAGRADVVEQLAAAASTPEDRQAWVQQLVDTVAAAVQEGTYPAGTERLKKISRGLGRNDQSLKSYVDFQVISSEYASRLRGSKSEDFPKIQEWYLESLTDFVSSYESTPEAGKAMLQLALSKEFEAKEDDALRWYRRVAKEFAGQPAGDKAAGAVTRLDSVGKRLDLRGTTIDGKNFQLAALRGKPVILHYWATWCEPCKQDMRRLRQLQARYQKAGLEIVGVSVDIHRSDAAAFLKENPLPWTQLFEEGGMESSRLANELGVQTLPTMLLIDKAGKVVQHNVQIAQLDEELDALTR
>NZ_CP042914.1|WP_068141849.1|6153491_6153983_+|DinB-family-protein
MNAQDVIRQTAGTSMMVVNAYLSDLDDSELCSRPGPGCNPIAWQLGHLISSECRLLDSICPGSAATLPDGFDEQHSKDNANKDQPGDFCSKQEYLDLFTRVHAASMAALEQLSEADLDAPAPEHMREMFPTVGAMFVLIATHPMMHVGQWVPARRALGKPVVI
>NZ_CP042914.1|WP_148080738.1|6151636_6153229_+|sigma-54-interacting-transcriptional-regulator
MDSASSLTQWGQAAAELLTDLGPLLLRLGDYRQRCGRLEAMLDCAAQWHQEDDPEALLHAIANAATQLLQSERASIFLWDRARKKLVGKPALGVGNQPLEVDDSAGVVGAVLQSGQPRRWQASEDEEAEINRAVDRKLQFVTRSLLAVPLQDQAGKPAGVFEVINKKQGAFSHEDIDTLTRLASQAAGVIRNTQDRHTAIRSRDRLIADVADTVQIIGESENIAALRKTVQRVAATDLSLLILGENGTGKEVLARSVHFQSPRRSEPFVAVNCAALVESLLESELFGHEKGAFTDAHQARPGKFELAHGGTLFLDEIGDMSLGGQAKLLRVLEEKIIVRVGGSTPIPVDVRVVAATNQPLAGMVREKTFREDLYFRLNVVSLQLPPLRERGDDILLLAEHFLSEFAQQIGRLPAKLSKHAVSAMRRHAWSGNIRELRNLMERVSYLCPGDTIQVQDLSFSADPRTPTGSDLTPQSALTLGLSEATRRYQVQAIEQAIASCQGNMTDAAARLGLHRSNLYRKLKQLGMDAS
>NZ_CP042914.1|WP_068141847.1|6150176_6151007_-|enoyl-ACP-reductase
MDFQGKKGLILGVANDHSIAWAIAKRIMEGGGECGFTHLPDRPDDERQRNRRRVSKLTDKQPNAKFLVPMDAQDDEQIASVMQTTKEEFGKIDFLLHSIAFADREDLGRDTVYTSRAGFKLAMDVSVYTLIAATAAAKNADILNEGGAIATMTYFGGEKCVPGYNVMGICKAALEATVRYLAYDMGPQGVRVNALSAGPMKTLAGRAAGVEEMLSLYEHMAPMARNVTHEEVGNTGAFLLHEASNGITGEILHVDGGYHAMGSPGRLLDQIQAAKS
>NZ_CP042914.1|WP_068141846.1|6149008_6149980_-|SDR-family-oxidoreductase
MTIGADLKQQTCLVTGGAGFIGSHLVARLVDLGARVRVLDNLSTGYLDNLQPWRDAIEFTEGDASDEGTVESAVDGCDYVFHLAAMASVPRSMAEPVLCHDWVATSTVRLLSACARADVRRFVLASTSAAYGDSPFVAKRETDPAAPLSPYAAAKLAAEQYCHAFSRSGGIETAALRYFNVFGPRQDPQSEYSAVIPRFVSMILSGERPIIYGDGGQSRDFVYVDNVIDANLLAATVPEAAGGTFNVACGSSTTLLELLDWLRDLLGQEIEPIHEPPRVGDVRDSLADITQARSVLGYEPRVTVADGLARSVEYYKTIATANS
>NZ_CP042914.1|WP_068141081.1|6174158_6175724_+|terpene-cyclase/mutase-family-protein
MTPTGGSTPQAQPVRTAEAAEPDAEDADLQRRFVLFQAVPAWMISMVVHVLILLALALVTIGVEEKVVNVLSASSIGEEGPEIDEFSMEQPQEEMEQTEEEVTEEVVEVAEPIEDMQPLDLDTPLEMVSVPISVVDMASAMAPVADSLQTLSATTTSELGSRSSADVKKQMLRTYGGTESSEAAVTKALKWLERHQLPNGAWTFAHQVVCRDPACDHSGSHKEAVNGATALALLPFLGAGQTQFTGEHKKTVERGLAFLIANGKPKSIGGLQCLDFTEKGGSMYSHGLAAIALCEAYAMTEDSRLAGPAQGALNFIMYAQDPRGGGWRYRPRQAGDTSATGWQIMALKSGYMGHLTVTPASIRGSTLFLDSVQSDGGSLYGYTAPVANRRSGRACHAVGLLCRMYLGWDKDHPGIKKGVQHLSAIGVAKGDIYYNYYAAQVLRQYGGSEWEKFNTELRDWLVAEQSDTGGTKGSWAFKNAGHGTEHGGRLYMTCMATMILEVYYRHMPLYADKAAEEEFPL
>NZ_CP042914.1|WP_084427732.1|6176258_6177431_+|porin
METLSGCNAEKPVSGCRDCNRNEGRKLNWLGLDDLRVGGWMQLGYHSSGLGNNPRAKRFNDYPDHLQLQQAWLFAEKLADGRHGLDIGGRVDYLYGTDAQDTQAFGTDDFDDNNDWDNGWDNGAYGHALPQLYGEVAYGDVSVKFGHFYTIVGYEVVSAPDNFFYSHSWQMNNIEPFSHTGVISTISLTDRITAYAGYTLGWDSGFVDNGDAFLGGLAWILTDRFSLTYTTSVGRFNESVDTLNNNTRLPVNFNERGHMHSLTTRYRLSDRFAFISQKDFIDTELQDGTEWRSGGGFTNYFLYDVSENYSAGLRFEWWQVDGAKFVGNRSQKDVYMLTLGLNCRPHSNLIIRPEARWDWGINESNMAVLNLNENGESSQFTFGVDAILTF
>NZ_CP042914.1|WP_068141066.1|6177584_6178793_-|hypothetical-protein
MMKRLASVIVLLSLTVASAFGDETLELTNGARLTGTTRKVEDPKQPYTLIETEDGLRVALRQHDIRRTKTDEVTEQYRQLAARVPDEADAHFEMARWCTKNRLRAQSRYHMRRVIELDPEHGTAREALDFVKRRDEWIPRSQWERERGLVRSAGKYHLPEDLASQKSSKETETKVKKWAPDIARLRNKVLRGGDKAGEALQSLRAIQDPLAAPAIGDELTNPRNRKQPQSLRLLWVDLLARMKTPAAVKPLVQIGVKESDPVIREAALEHLAEYGYRSAQFSYAPMLKSANNTEVNSAGRALAALPNPELRFVLVDALITEHVVAKGGPSTDMNVLMGQNGGGGLSMGGGPKSEKVRKRNPAVLAALREIAPDVDFQYDENLWRQYFAQQLGSYSGDLRRDR
>NZ_CP042914.1|WP_068141064.1|6178998_6179541_-|Holliday-junction-resolvase-RuvX
MSEPLAAGTQEPAFPDSGRLAGVDYGTVRIGIAICDPGRILVSPLEILRRSDTEREADFFGQLVKQERIAGFVVGLPIHCDGGESDKSRESRKFALWLHQQTGLPVRLFDERFTTADATRRLRSGGMKSAKRKQRLDAVAAQVLLEAFLEAARYAGPDELPGQSLQQAAGGGSGLDDQTN
>NZ_CP042914.1|WP_148080467.1|6179765_6185987_+|hypothetical-protein
MSTAHAEPIGLIERYALAEDRQAILDELIPGSVEYYYYHCLHYQVSGQLDLAEAKLQEWENDKRVRNNSLLVAIRDRQRLLTYGNSPDRTITYLRQRLGLRLDHAPRPIRGQRQYPDTLPADLLNVDALIDEALRSDKRLTRQGLQRLGERFLNNQVAGLPVDLAWLLNQVDGPWMPRLDELVIQQLQQRRQQDRRFGDLKAHQWLTLPELRAVAEAIPQVAGSDAMVRETLLRLRADDDTDIGQLPAARHAYLQRVDQYVSTLPATWNSLKASVLYRLLEADLAAGTPDRQRFMRYLKLPRNSPVILPELRRNVPSLANLNEDYTQLALLPPIRDETPLVRSYLELYLRDAEDSDAFAGLIRADYLNDVFAETKLLAGIGAADRWYRLLDPAQQQQLKDRVELTLAPHNPPHSDPQSASELIVDVKNVKELVVRIYEINTLAYYRNHSHPLNTDIDLDGLVATHQTRIQYDHPSVQRHRETIELTQLSGRGVWVVDLLGGGRRTRAMIRRGDLQYSMRQTIDGVEYTIVDEHRDPVTDGRMLIGSQEFVADDSGAITIPMADQPLTRHAILMDDQLATAVTMQQPAETYSLQAAMLLNEQQLLPGRMAELAVRPRLTMNGEPVSVSLLQDVALTITSTDLDGIQSTKRIEDFKLRDAAEATTAFRVPARLQQLHVQMTGYVERLSNGRRQSLSVGDSWSVNGIQQTTHTLDAFLTRDGEDWIVEARGKNGEAVASAAITLSLQTSLRNRAIEQTLQTNDAGRVRLGSLPGIPQIRFGIAGGPQHQRNLVLHRATWPAQLHGVVNQPQRLAIENAAQQQGRRFKLFELRGDRPLKNISDQLQHVDGQLQFTPQTAGNFRLLDTLRNRHVSLAITAGETHNGVAVGKIRQLEIRRRDPLGIASLQRDETGVRLQLSGAAAAAHVHVVASRYLPRRQALSQLALPSLSAPESRFMQWLQNAYISDMKLGEEYEYVLRRQYARKYPGVMLPQPSLLLNPWETEETKNESQAAMGGDAPMAAEQAPAAGRARGGAAKKDAGSAASSSPSYDFLANGGGVAINLTADADGQVLIPAALLDEWPIVQVVVMDPATQIQHTLFGKADKLETRDLRLANALAADRPLAFDRGVLIASPTAPLQLADLGSAQLQVYATVRDLLTLYTTLSPDSRLSHFRELGAWHTLGDEAKREAYGRLACHEVHMFLYMQDRPFFDAVVRPYLEFKKEKQLIDDWLLGLELTAWTEPWRYATLNAVERAILARHVPAARDSILRDLREQVALQKDDPDQLRRAIDSGLSRRLLEQKASTLSVNGLLREKERLSESEALDFKMLDDDMDGAAELSLGDRYFGGGMGGGGGERYLKRRGRRQAGSFFQQLDSTKQWAESQWDHVRTAAAGADLIAVDAFWLDYASGQQNATLSQHLLSPTENRHAALAALALCGLPLQSGDVSLPENNDGDYAPEHPVAVITKRLISLEAVEGEASLLVGQRFERIDAAPPEDEDAEVQVAPDEFLTQTGYLGQIVITNPTPLPRTVDVFWQIPEGALPLAGSLATDSVTIRLEPFAVERREYQFYFPAAGQFPHYPVCVSHDGQAVARGAERTFVVVDTPTKTDEKSWQSIARDGSAQQIQAFLKTANLHQLNLQEVQHRMRDRAVYDVVIAALDSAKLWNAELQAYAFHHRDLDGMQTYLSQRDDIVQSAGPVLNSQLLQVEPIERAFYEHLEYAPLVRARIHPLREQPEILNDKYLHQYRQFMQVLAHQSAPSTDQQLALCYYLLIQNRIEAALDRFQSVAEAPTEMQLQRDYLAAYLALHRGDLNAAAEIAQARAAHPVPRWRERFAELGNHLQQFRDLTAGTELVSDKPAADSDAVAEAAADLAILDRQRRQADAAQQQPSIQLTSEGRRIRIAHRNAQQATVNLYGVDLELLFSKTPFVRDDLGRMATVRPSLRKTIRLSGDGTSVYEIDAALAEQTLLVEVVSGPARSTTLYYGGSVATYVSEGFGQLQVSDQRTRQPIAAAYVKVYSRSANGEVKFYKDGYTDLRGRFDYASLSAPELDGVQRFAILVLDPERGASVHDVAPPTR
>NZ_CP042914.1|WP_068141060.1|6186406_6186865_+|response-regulator
MADLPIRLLLVDDDELDVMALRRALQRVDFEYELHVANDGVEALEMLQDRTRIPWPFLVFLDVNMPRMSGFEMLIEMRTNPMLSRVPTFVLTTSEADADRHFAFDQRVAGYISKSRTGHGYEKLVEFIQKYWEMVDFPPPLGSPTTTADANR
>NZ_CP042914.1|WP_068141057.1|6186885_6189006_+|excinuclease-ABC-subunit-UvrB
MPKTQLPPAQFQLNSPFPPAGDQPTAIRSLIQGFQEGKGTQVLLGATGTGKTFTMANVIANLGRPALILSHNKTLAAQLYGEFKEFFPHNAVHYFVSYYDYYQPEAYIPQRDVYIEKDASINEEIDRLRLASTSSLVSRRDVVIVASVSSIYGLGSPQDYKDLVLHIRKGERTRRDHLLMKLVEVQYDRNDVVFERSKFRVRGDCIELWPSYEEFAYRIEMWGDEVEQISMIKPVSGEVIDTCDQVYIYPAKHFVMGEDRIAAAIGAIKQELAEQLEVLQSRGKLLEAQRLSARTRFDLEMLQEVGHCPGIENYSRILAGKPPGAAPDTLYDYFPDDFITMVDESHVTIPQIRAMYAGDRSRKTTLVEHGFRLPSAMDNRPMKFEEWEARVGQIVYVSATPSEYELEESGGEVIEQIIRPTGLLDPVIEVVPARGQVNHLLEEIRQRAAIDERVLVTALTKRLAEDLATFLQEQNVRCRWLHSELNAFERVELLQELREGKFDALIGVNLLREGLDLPEVSMVAILDADKEGFLRSETSLIQTIGRAARNVNSRVVLYADKITDSMRAAIDETDRRRSIQQQYNEQHGITPQSVQKTLRAGIEQDAAKRRENAAKAQAESDGQYVTIEYVDELEREMLEAAENLDFERAAQLRDRVVQLKDAIGKPLSEVELTGSKSSGSMGRQQKRRKKGHKGTGRKSVPRPKRG
>NZ_CP042914.1|WP_148080468.1|6189173_6189542_+|hypothetical-protein
MIASLTKFLFAAGLCSAALVLGNTANAQQPTPQFESDGMELFDTPSPSAERAATAAHIPTPAQMRQALAWHQRLQRVARTEEALRRGYHLSRPPGIVTPSTTSRYPYYRTIIIPVYVDNLRR
>NZ_CP042914.1|WP_068141054.1|6190169_6191423_+|hypothetical-protein
MLGSIPHRNSLLAFQQTLAAVLLMALVGCSALPDVRHSVEIHNPFPQLKRVAILPFYNQSNEPTLDAGTVSEAYYAALQSVPGFEVLPVGVTRLQLEAYSATYGPPRSGEDFQTFARMLGVDAVVQGSVTDFSPYYPPRMGLTVHWYAANPGFHPIPVGYGLPWGTKAEKDIPSHVVLETEFELARQQLATQTPDLPAPPLPTPPQPTPAAVQQTAAIEPVRENAPDGDDAAEASTDQSIVEALPPPVTDAAPPAGPRDWQPLRPAPSPHHDVVIHPAGPTGESFHEPPMYADDEFPPAETMPPAETMLPADWPDPAGLIPNGPQPVRPTAQPQHEPVLTHTRLYDGADSKFTERLANHISVSDDRRPTNWQAYLSRTDDFVRFCCRLHVTEMLEARGGADQSDLILRWPIGRYRPQ
>NZ_CP042914.1|WP_148080739.1|6191467_6191710_+|hypothetical-protein
MENEVNVLALVKGEERFMFLFDDNNRDETLRTLARYAANPELDFSWYDAAMLSRKIREAVPDPVPVGSTSRIDASLRGRQ

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Crispr_ID: NZ_CP042914_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_16

6413296-6413397

Orphan

Consensus_repeat	Method
AACGTCCAAACTCTGGCGAGTTCGGCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_16

>merge|NZ_CP042914|16|6413296-6413397|CRISPRCasFinder
AACGTCCAAACTCTGGCGAGTTCGGCTACGGAAGGTGTAGCGGTGGTTGACGTGGGTGAACGGCGGGGCAAAACGTCCAAACTCTGGCGAGTTCGGCTACGG

>NZ_CP042914|16|16|6413296-6413397|CRISPRCasFinder
AACGTCCAAACTCTGGCGAGTTCGGCTACGG	AAGGTGTAGCGGTGGTTGACGTGGGTGAACGGCGGGGCAA
AACGTCCAAACTCTGGCGAGTTCGGCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068141982.1\|6415134_6416409_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042914.1\|WP_068141992.1\|6400361_6403076_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_068141993.1\|6399191_6400337_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141974.1\|6421115_6422045_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141983.1\|6411965_6413264_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_084427987.1\|6413511_6415113_+\|DUF1549-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042914.1\|WP_068141987.1\|6406524_6408927_-\|DUF1553-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042914.1\|WP_084425984.1\|6422863_6424132_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP042914.1\|WP_148080485.1\|6410122_6411235_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141976.1\|6418793_6421100_+\|DUF4838-domain-containing-protein	unknown	unknown	gnl\|CDD\|374379
NZ_CP042914.1\|WP_162276031.1\|6403144_6404206_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376345
NZ_CP042914.1\|WP_084427993.1\|6405065_6406430_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042914.1\|WP_068141986.1\|6409116_6409905_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141995.1\|6394152_6395439_+\|3-hydroxyacyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224170
NZ_CP042914.1\|WP_068141802.1\|6424243_6425506_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP042914.1\|WP_157609891.1\|6422518_6422662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080487.1\|6417598_6418747_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320075
NZ_CP042914.1\|WP_068141979.1\|6416405_6417452_+\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP042914.1\|WP_068141972.1\|6422224_6422410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068141984.1\|6411314_6411866_+\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377317

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068141982.1\|6415134_6416409_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	1.61763e-81
NZ_CP042914.1\|WP_162276031.1\|6403144_6404206_-\|hypothetical-protein	gnl\|CDD\|376345	pfam00542, Ribosomal_L12, Ribosomal protein L7/L12 C-terminal domain.	7.33868e-12
NZ_CP042914.1\|WP_068141979.1\|6416405_6417452_+\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	6.19893e-43
NZ_CP042914.1\|WP_084427993.1\|6405065_6406430_-\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	4.74946e-176
NZ_CP042914.1\|WP_084425984.1\|6422863_6424132_+\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.551e-88
NZ_CP042914.1\|WP_068141987.1\|6406524_6408927_-\|DUF1553-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	3.01732e-111
NZ_CP042914.1\|WP_068141992.1\|6400361_6403076_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.41119e-80
NZ_CP042914.1\|WP_084427987.1\|6413511_6415113_+\|DUF1549-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	2.12204e-40
NZ_CP042914.1\|WP_068141995.1\|6394152_6395439_+\|3-hydroxyacyl-CoA-dehydrogenase	gnl\|CDD\|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	1.08142e-57
NZ_CP042914.1\|WP_068141802.1\|6424243_6425506_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	7.45195e-37
NZ_CP042914.1\|WP_148080487.1\|6417598_6418747_+\|hypothetical-protein	gnl\|CDD\|320075	cd15902, EFh_HEF, EF-hand, calcium binding motif, found in the hexa-EF hand proteins family. The hexa-EF hand proteins family, also named the calbindin sub-family, contains a group of six EF-hand Ca2+-binding proteins, including calretinin (CR, also termed 29 kDa calbindin), calbindin D28K (CB, also termed vitamin D-dependent calcium-binding protein, avian-type), and secretagogin (SCGN). CR is a cytosolic hexa-EF-hand calcium-binding protein predominantly expressed in a variety of normal and tumorigenic t-specific neurons of the central and peripheral nervous system. It is a multifunctional protein implicated in many biological processes, including cell proliferation, differentiation, and cell death. CB is highly expressed in brain tissue. It is a strong calcium-binding and buffering protein responsible for preventing a neuronal death as well as maintaining and controlling calcium homeostasis. SCGN is a six EF-hand calcium-binding protein expressed in neuroendocrine, pancreatic endocrine and retinal cells. It plays a crucial role in cell apoptosis, receptor signaling and differentiation. It is also involved in vesicle secretion through binding to various proteins, including interacts with SNAP25, SNAP23, DOC2alpha, ARFGAP2, rootletin, KIF5B, beta-tubulin, DDAH-2, ATP-synthase and myeloid leukemia factor 2. SCGN functions as a Ca2+ sensor/coincidence detector modulating vesicular exocytosis of neurotransmitters, neuropeptides or hormones. Although the family members share a significant amount of secondary sequence homology, they display altered structural and biochemical characteristics, and operate in distinct fashions. CB contains six EF-hand motifs in a single globular domain, where EF-hands 1, 3, 4, 5 bind four calcium ions. CR contains six EF-hand motifs within two independent domains, CR I-II and CR III-VI. They harbor two and four EF-hand motifs, respectively. The first 5 EF-hand motifs are capable of binding calcium ions, while the EF-hand 6 is inactive. SCGN consists of the three globular domains each of which contains a pair of EF-hand motifs. Human SCGN simultaneously binds four calcium ions through its EF-hands 3, 4, 5 and 6 in one high affinity and three low affinity calcium-binding sites. In contrast, SCGNs in other lower eukaryotes, such as D. rerio, X. laevis, M. domestica, G. gallus, O. anatinus, are fully competent in terms of six calcium-binding.	2.21749e-06
NZ_CP042914.1\|WP_068141976.1\|6418793_6421100_+\|DUF4838-domain-containing-protein	gnl\|CDD\|374379	pfam16126, DUF4838, Domain of unknown function (DUF4838). This family consists of several uncharacterized proteins found in various Bacteroides and Chloroflexus species. The function of this family is unknown.	2.50264e-24
NZ_CP042914.1\|WP_068141984.1\|6411314_6411866_+\|DUF488-domain-containing-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	1.25071e-35

>NZ_CP042914.1|WP_068141983.1|6411965_6413264_+|hypothetical-protein
MYSKVRIAGHHRGGKHFAALCAISLLLSGLGGIAHADITPNQFQGSDVERINQAIVAAAATGEPVVVPRINKAADGDHEIWRLDAAILVQSGTYLELQNCHLKMTDRSRDNFIRSANCGMGVTDIEPMSNITIIGKGHVTLEGADNPRATGDSAKTLGQRTYGTDAGVAGESQTGDWRNIGILMAYVDHFRLENLFLKDAHSWTISLERCTHGVIRDIEFSADEGKVVNGKREVFLNQDGLDLRQGCHDIDIHNITGHTGDDLIALTNIVNDSIPAGSPDYIMVSRPNNRGNGQDDIYNITIRNVRGHTAGGHHIVRLLNASGLRIHDVILDGLIDTSTGRAAKAAVKIGDANPAWGGVTPLGDTYRIVINNVISRARHTVLIGGSLSESSISNVFKYGAAGEPITYQSGRDYVRNVMISNVKNLPAASNSP
>NZ_CP042914.1|WP_068141984.1|6411314_6411866_+|DUF488-domain-containing-protein
MKFWTIGHVRHPFDLFVQWLVQHQIECLVDVRRFPGSRNSPQFNRETLCPALAEYNIAYQWIESLGGRRSKSEVVENSPNEGWENKSFRNYADYMLTDQFQEGFEQLRQLAEAKRTAIMCSEAVYWRCHRRLISDYAVVGGGEVEHIFPDERTKPHTLTSFAKIDATSGPIKLTYPAAPSLFD
>NZ_CP042914.1|WP_148080485.1|6410122_6411235_-|hypothetical-protein
MDDVFMMPVFRHSLLGLLGIGWLMGAPATGQQTRTIQVERDEAALLLVVDGWAFWRTSQLIESTRNSRGQLLDHRIFRQRISETTATLVLQRTSGPGFNPCQAATPDGTLICLSPARDRVHWISPDGSVKKSQEIDSSERFVNSQRVVQEFAIEKAFQDGALIRWNRITYIPKKFKPKLEMWHTFAPFNDNRIDLAHQVTVRPETESMYPFQGSEPFRAGDKLVWCANAELQAVDLKTGARSQIPLNRHDETEFNLRHASVSGFDGELVLLGSNVVVDVASGKRVATNWDDERINGIVMTHARIGYRVWNGNLEAVDLEDADREPVFLAKCRQQPMARTTSGILVWTGEEWTTVPWYASDPNGKSGRAKP
>NZ_CP042914.1|WP_068141986.1|6409116_6409905_-|hypothetical-protein
MMSRTFFAIVIHLLLAFPCLANNSFFIPGDAFFYFEIDKAEWEALQSGELSVMKYDRPEELSFMFCGYAGYENLEIANLPDAYRARLVEAIVTMKKKYPSKIVEIDHGDTGSFGGPSGVEKKEVNKIRIFVYNQSFDFGKHRIALKYNESWPEAGVALGLRRDHFQYDFFVASPQAIVESWRMGAKVRPLSVQVPTSGRIHFKEPMKLDPAKVKFLVCPPKPLSSLCFPARDSDLECFSVSKAATTTLKVDSTKKSVWTETK
>NZ_CP042914.1|WP_068141987.1|6406524_6408927_-|DUF1553-domain-containing-protein
MPPLAVLQIFRAGSLFVVAGILAFSAPAVAKEAVDFNRDIRPLLSDRCFHCHGPDSESREGGFRFDMRDSAIGEADSGQRPITPTDPATSEMLRRLVTEDAAERMPPEGSNKERLTDQQIQMIRDWIAQGAPYEKHWAFIPPRRSAIPDVKQTDWPQTSIDRFLLASMEQRGLSPSAPAERAMLLRRVSFDLTGLPPTPEDLQAFQADQSPDAYQKVVDRLLQSPQFGEKMASTWLDAARYADTNGYLQNGYRVSWPWRDWLVQSWNQNLSYDRFVTELLAGDLVDDATDATRLATCFLRMHMITSEGGSLDEEFRVEYAADRAETVGTVFMGLTMNCCRCHDHKFDPFPQQEYYQLFALFADPQGEDPVKDHSRDPAFVPFVKLDQTNYAGEAARLGQCVREASQRNNENAAARLTLQKDMLTSGLPVMVMKENPAPRQNFVLQRGAYQNPDKNRPVQPGGVDAVLQWKDELPRNRLGFAQWLTDPEHPLTARVEVNRIWTTLFGRGLVDTQEDFGQQGSYPTHPELLDYLAVEFRESGWDRKALMRRIVLSAAYQQSSQITPRHRELDPTNRWLARVERRRLSAEAIRDQALFVSGLLNAQLGGFAAMPYQPSKLWIEGANSPGYGRGKYVLTSIYEPSSSSELYRRSIYTFWNRNAPPPQMVIFDAPGRSFSSVSRTVTNTPLQALVTMNDTQFFEAARVLAERVLADEDLTDDRAKLANIMRRCTGRLLTAENEAMLLDALNTWRKQYQAEPQRAERLLAAAGQHPHDPKGNASECAAWTMIATTVLNFDATLVVN
>NZ_CP042914.1|WP_084427993.1|6405065_6406430_-|DUF1501-domain-containing-protein
MGALGVAAMADLASADSAAVPHFPPMAKRVIYLFQEGGPSHLDTYDYKPQMKALDGQDLRKMPDIHQGQRLTGMTASQGSLPLRQSPFKFQQHPNRQDGVQLSELLPHTGGVAEDICFIRSMHTDAINHGPAVTLMQTGSQLAGRPTMGAWLSYGLGSESKELPAFVVLVSQGVGQMQALLSRYWGSAFLPSEHQGVRLRSSADTVLFLKDPDGMSRDDRRQMLDLVAKINQADAERNGDSEVLARVAQYEMAFRMQSAVPDLTDISNETEASLALYGPHATKPGSFANNCLLARRLAERGVRFIQLYHRGWDSHGNVPRDLPAQCGDVDQPQAGLLRDLKQRGMLEDTLVIWGGEFGRTSYAQGPKGATFGRDHHPRCFTVWMAGGGIKPGIVHGATDEVGYNVAENPVHVHDLHATVLKCLGIDHTKLTHRYQGRDFRLTDVHGKVVKDILA
>NZ_CP042914.1|WP_162276031.1|6403144_6404206_-|hypothetical-protein
MKNETPLVPGTPVLAAFEGDWLKAEVLAAWDSGRHVVHWPELGHLRNQTLGQTHLAISHETLQRLRSNPEAFSPSVKLPLNSLQPPPEGYIVLPDEVSLLPGVPVKVGAWDYTFLRENAGQVSLLYNTSAREYVMPRRRVVIHEEVIGSLKREGAAEKYSKRLQELQSSVTQRLMRSRGPARTYQINIPLPAGYQRITAETPLQVETDCQACWGRRWSPVVVKSLFENGDVGIVWTKWPSTRIERVTRESLIVSDDTLAKLAGDKMPTEATKTPAEPSGTAENFTLVLVNAGDRPVRVIKEVMEIANLDLSMAAQATRELPLELKRGLSSTEAEKWKTKLESVGATVRLDVAK
>NZ_CP042914.1|WP_068141992.1|6400361_6403076_-|protein-kinase
MSPQPDQDRNLLYGIIAHQMDFVSADALMKGMNEWILRKATPLGEILRQQGVMDADTCELIEALVAKHVARHQGDAQASIAALKGSGSIKQRLSSIDDEQIHRSLRADVREDPQHTLRTLPPPKDGEKKRFRVLRSHARGGIGEVYVAEDSQLAREVALKELQQDEAYNEVSRARFMLEAEITGSLEHPGIVPVYGMGCYDDGRPYYAMRFIRGESLKQAIDAFHQTADFSDEGSKRLALHKLLRRFIDVCNAIEYAHSRGVLHRDIKPANVMLGRFGETLVVDWGLGKPGTRTNRDRELVEATLKPRSGSGSLQTRHGSVFGTPAYMPPEQAAGQLDRLGPTSDVYSLGATLYDLLTGQPPVNGREIADVLVQIKRGNFPAPSEIAAWVPRPLDAICRKALATNPSNRYLSPRALAEDIEHWLADEPVDAYRESSLERAARWMRNHRTLVSGLGAGALASIVFLSTGLVLLNNAWRGEVAARVAASNNYQLAEERFQLARDAVDKFYVQVSEEVLLDEPGLQPVRRELLSQALEYYSDFVEQRGDDPALRHELGLAWFRIGAITEQLQSPRDAIEAYQSARRIQTELLEANATLPRRAALADTLNAIGRVFLRQQRLETAADAFREALRLREENARLQPGDTTYQRKLASSTMNVGIVARQMGSKERGYELINEAQRQRREALAKHNDLLVLRDLGMGHYNLAVCYLQDEKRQASERNLASAIEAFEEVLLQTPRDATVERRLAQAYSLLADGQLAAEDAESAIENYYASVDLFQSLSIRNPDISEFTARLASLHMNLASAEQALGNSAAAHENLDVAVSVLSDLSARIPDVPVYRRDLAVSLRKLASLDAGQDSAAAKRNAAESKRLLEGLMEQFPGVADYIEQFGETEKLIDALENPGKTT
>NZ_CP042914.1|WP_068141993.1|6399191_6400337_+|hypothetical-protein
MIGDTNAGTCFSLRGIVNADISHPTLTCARLNISENNTAIPVDRVYYSYRHFHNSNSLRAYQFREVYNYDRHVVGFEKTFFGGMASVETRIPIEKRLRSDIISIVDPEVTNIVDLVADEEREIGLGNVSIISKLMLLQRSNFVLSAGLGVTIPSADDVRYRLGNRVSLPNTIVPGLVARNVSTFDFKYENETVYLSPFLAWLSTHNRSRWFHQGFLQIEVAANPSKLNANTAGTTEYFFNGVDAGFSVFQTPGGEPVEVDVFAQTLMRLNLGLGYQHTYYDRSRWISNIRSLYELHYTTTLQRANLSFIPLEQFGAGAGTVFPQFGAVGNADPRTDILNAAVGLSLNLGPLLVTNGVVAPLREAPDRGFDFEYNLQVQMLF
>NZ_CP042914.1|WP_068141995.1|6394152_6395439_+|3-hydroxyacyl-CoA-dehydrogenase
MTSALQPSPDPPNVYLIGCGVVGQAILQAHLAAGCNVSISDLDEARLQAVCEQAIAGIPQARVTSAPPLGEKLPTRHLFAPEQNAIHPPPGRVEPQRGEGKASRRQPSPPGNPEDLAPLAIESIYENREAKRGLLGDLQSWLGPQAVLCSNTSTLPIAGLVEHLAVPEQCCGMHFFMPVEQRELVEIVVPPGASPSTIERATAHARRIGKPALAVADTPGFVVNRMLSPYLNEAFRLLCQGVSAEQLERVAKRFGMPLSPLELVDWIGPRTAFDAGRVYWQAFPGRLDPAPLLPGMIKAKLSGRGGGQGFYQYENGCRSEGLSAAALAVVERYERDPREWNDDEVRCQLFLPMLIEAHLILADGVVATVSEIDTAMRGGLGFRSPPGFFAAFRQWGTAAIAEELRTRKEQRSFSSAESLLEQLDAGRL
>NZ_CP042914.1|WP_084427987.1|6413511_6415113_+|DUF1549-domain-containing-protein
MFRDHTFWMLIAVSFSPALSAPLPAAAPLHQQIDALIEAHPSFDASAADAADDATFLRRVYLDLAGCIPTAQQVREFLKDPSPDKRTHTIDALLASPQHATRMQYVLDELLMERRSGKHVAADQWRTFLRQSVLDNKPWDVLVREILSADGSQPETRPAAKFLLARELHRDEVTRDLGRIFLGRDLQCAQCHDHPTVDDYLQRHYFGLTAFITRSYLFKDPKTGITSIGEKAEGDVEFTSVFTSETAGTAPRMLDLPPLADPPAEKELYKVKRAKNVRGVPIYSRRLQLAEAMTDDANRAFRLNIANRMWAVMMGQGLVEPLDMMHEQNPPTHPQVLDLLAASLLEHGYDLRYLLRELALTQTYQRSSQARNAADHDDHPYSVARLKPLSPEQLAWSMMRATGIIDDEPVEDSSAAGPADAAIQKHVETFAKMFSTGGQSTRFDAAAEQALFLRNGNLIHSWLTAKDGLVTSLQPLDDAQLAEELYLQVFSRMPTEQETRRVADFLQSTSDRPLAIQQLTWAALVSTEFRFNH
>NZ_CP042914.1|WP_068141982.1|6415134_6416409_+|DUF1501-domain-containing-protein
MRRNQGCSPVEHVLARRQFLAGSASAAVGACLSKPVQAHPLMQADSLKRSGKRILQIFLQGGVSQLESWDPKPGTKFGGPFRAIPTSVPGMHISELLPHTASRMHHLSIVRSINSKINDHRKGMLYMEKGRPTGDFPYLGSVASKYLAGPDAALPGYIHITTRGINDSTAAFLGAQHAQLKLEGVQPPSNLDLPQDLDEELDAQRESLRRQFDEPFAQHRSNAELDTYDAAFQQAALLMARKKIFEGSASEKDLSRYGTHDFARYCLLARTLLENGATCVKVTHHGYDSHAENFNFHLEQLGEFDKPFAMLMDDLSDRGMLENTLVLVCSEFGRTPKINTKYGRDHWGTAWSTVLGGCGVQSGAIIGSTNNEGTEVADREVDSGHLFHTYLRAVGLDSYAEHDLPGRSIPIGDPAAEEIGELLS
>NZ_CP042914.1|WP_068141979.1|6416405_6417452_+|WD40-repeat-domain-containing-protein
MNPIETETITKTSEPSVDPLHTHRVAEYKHERPLTTLCCDPTGQYVAAGAEDLDVQLWNLEDEQRRTLQGHDSWVRSLQFSADSSRLYTACWGGVVKAWDLTPPEPTVLYSIQAHQGSARWVSVSPDGKFLATGGNDLLVKIWDAENGTLLQAFSGHRRHVYGVQFHPTAPFIVSQDLVGVVKVWNLLTGQAERTFVADMMTGYDKKFAADMGGSRDLQFHPDGSRWASAGITKLTNGFAGDQDPIIVVFDWETCEPLHQLRAAQNFKGIAWGARFHPRGFVVGAGAHKNGKGELWFYDLTQDQPYHTVALPRAARGLGLIGDDRLAVAHVDGNVGVYQMSKPEPHDS
>NZ_CP042914.1|WP_148080487.1|6417598_6418747_+|hypothetical-protein
MKTSKWLSVVACFLWLCISNTKAAAQILSPSSAAEDSDLYSLVLISSDLSDAHQTMTICDQNEDGYIDAEERSKLPWQSEFADFDLNQDGKLTHLEVAVRQAKKRAAFDITQFDRKNSQAFIRRYDTNGNGQLDADEIAERWPPDPSEFDKDEDGIITLTEIAKQFAFKRGLRRELGIEAVDNMSSVNSIKKFDIDGDRHLDSQEWAAARLPLEGKLHDSNEDGKLNQMELSLLFAKHRRDLGLSKSDGVKAKRILAMADANRDGKISDNEMNADIFAANPQAASQYSKFDANSDGTVTLSEIQQAIAAERKKLGYSDSHVSNARRLLLRHDADRSTFIEAAELAQQAGPGKLTRDTLNSADQNQDGRLSLEELAKHLAAQE
>NZ_CP042914.1|WP_068141976.1|6418793_6421100_+|DUF4838-domain-containing-protein
MCNNKFVFVVCCLAAVTASASPLVKDGKPIGEFVLPAEATGAESFAANDVCGWIQKITGAEVPIVSKPSEQANTKVFVGTAFANVFPDDLKRLQGNDGFAVRRRGDNVYVFGSRPRGTLYGLYALLEKNSDLIFARPHADFGTVHGQSPDFELTETDFIDIPVFLNRRFGPNWPKHRPTGEWLLRNRDNTRDVRANYDGFMKLDLIEPYGTNFAVPIASHQDEHPEYFGYDPIKKSRRFVKHGEGTMCLSVPGLPAIWAQGLADDVARHEARFGRKVEHVRLGPGDNWFCCQCEECVAPLTLPDGTQLQCKDPDSIKDPLFRSTQIMMFINEAMETWQTLRPQTPIHVLAYIHFAEPPRVAPHPDLGIWFAPYPTSNLHFPLLDPRQPEPWRSRFAKWLTMTDRLGFYEYYEAKPSPQAFYAAANLRAVMQRPDHSNALIYAETSNDFGTDGIGNGEFGWDVGQMNLWVHTRLFWDPTQDVDALYRYYIKRTYREAAPQMLAYYDLIKTSWLSPDNDTFSSCHASIAGVYKGLIVERGLEKECMRLLTEAEAAAKHPHSKTMIRRMREQYEGFSKDMARLMVAHIQEIRGEADDFDSLQWEKPMVNDDFQLVTREGEEPPAFSSTKLQAAHDGESLHLRFRLEGPPAERAGRSASHTERWPQGDHVEFWLVEGRTRYVFAFNADGVQYDAKNLDRSWDSNWDLNVRSTSTGWEAIASIPLSTFSFAAGQPTNVRWFCTREIHQEGQPSKEVSCQGKPLYYRNFPIVIE
>NZ_CP042914.1|WP_068141974.1|6421115_6422045_+|hypothetical-protein
MKPIYCLLVLLAANTAMAAQPLSIDFSVGDAADYFTAETADRVSPAAGDAAAMQLSDATVQLQDVTVLPARSYSLRLVAAFAGDAESIEENPRFEIFHQLGQTSLRLPSREIRFYDAAGKPTGRPLMYALPYRKTHQYQDLFYTPADAATARIRLSSGKDLQLTLSQLVLEPTDNDGTLNLNPAFELGPDNYSGWQNIAAGGKFIQREGKTILDTKYGSTGQRIPLQEPGTYAFSALATGNGYNSVVIVRVYDADDKELMRSSTRRYGPRTYFVPPPEAAYLSLLVYSCLLEEVRLVRVGDEDAINAVN
>NZ_CP042914.1|WP_068141972.1|6422224_6422410_+|hypothetical-protein
MAKSKKRKSEQSKLSERINLRVSEKELALLEKAAEQDDRSLSNWARRVLVHEARRQLGKKD
>NZ_CP042914.1|WP_157609891.1|6422518_6422662_+|hypothetical-protein
MAGKKSKGKKNKSKKNKKSSKGKGKALKGKKGKSKKGKKSKGKKGKK
>NZ_CP042914.1|WP_084425984.1|6422863_6424132_+|ISL3-family-transposase
MSQLSWIFYHGSMNELHAHYRLLLGLDDQWQVQNVDLQMEANSVVIQLRHSGGKLCCPECQDECSRADTAPTRQWRHLDTMQFETIIEAAIPRSKCDRCGVKTIAVPWAGKHSRFTLMFEAFAIKVLQAASSVSAATKLLKVSWKTAHELMQRGVERGLQRRDTDPIETLGIDEKSFGKGQDYVSLMVDLEGSRVLEVVKDRSEASCDKLFDSLTDEQKSGIRAVAVDFWQAFRNSIVKQVPQAKIVHDHFHISQYLGEAVDLVRRRENKLLRSEGINDLTGTRQLWLYNEETLDDATQKQIEDIRQVAIKTARAWGIKEMFRDFWTYRSGAWAKKFFDRWYAWAIRSKLDPIKKVARMLKKHLAGLLAYFEYSITNAKSEAFNGRVQAIKSAARGFRNFENYRTRILFYCGALKMEPDFSH
>NZ_CP042914.1|WP_068141802.1|6424243_6425506_-|insulinase-family-protein
MIDFERIEGPFGVPIYFQQLPVNTVSMNWLVFVGSADDDAGGGHGIYHWFEHLPSRGTRKFPGGYRDTEARLVRHGGGSDAETGSTHTAFSAACPKRVWAESLEILADMVGQPLLRVEDIEAEREIILQEIHEWHSDPYHHSLCRLPGVLWPGHPLGHDQLGTAKQLKAIDAGQLRHAHQIGYSRNRSALFVAGDIQRSELLDVVAECLDQMPGTPLSPRSRPVSYGPLPRWQADHVTTIQTSHADSVVYLLFPIPPTIEGIDVHLQWDFLADVFSAGELGSPLNRLVREDSRLAYSPEFISTTYPDGGYAGLVAQTSVEPQLVLDAFWRLMHGPEIRSPDWLNYVRDTIRGSIEMHDPNACEYTDEGSASLIHYGRCLTDHEYSDKMLGYRDGDVAEWLQQLVPSAAHAIVFQGHGEHE

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Crispr_ID: NZ_CP042914_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_17

6886089-6886177

Orphan

Consensus_repeat	Method
TGTTCGCGGAGCGAACAACGACCAAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_17

>merge|NZ_CP042914|17|6886089-6886177|CRISPRCasFinder
TGTTCGCGGAGCGAACAACGACCAAAGCGAACGCAACGCAGCACAGCTCCTGGTTTCGTTTTGTTCGCGGAGCGAACAACGACCAAAGC

>NZ_CP042914|17|17|6886089-6886177|CRISPRCasFinder
TGTTCGCGGAGCGAACAACGACCAAAGC	GAACGCAACGCAGCACAGCTCCTGGTTTCGTTT
TGTTCGCGGAGCGAACAACGACCAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068142683.1\|6885303_6886032_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377585
NZ_CP042914.1\|WP_068142687.1\|6886187_6887183_-\|phosphoesterase	unknown	unknown	gnl\|CDD\|223691
NZ_CP042914.1\|WP_084425984.1\|6890634_6891903_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP042914.1\|WP_084425912.1\|6872710_6873910_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP042914.1\|WP_084425988.1\|6894476_6894995_+\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP042914.1\|WP_068130111.1\|6876592_6878110_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042914.1\|WP_068130462.1\|6893000_6893441_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP042914.1\|WP_068130077.1\|6895115_6896522_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|373239
NZ_CP042914.1\|WP_084428265.1\|6888283_6889120_-\|nickel-pincer-cofactor-biosynthesis-protein-LarB	unknown	unknown	gnl\|CDD\|224605
NZ_CP042914.1\|WP_068130474.1\|6893548_6894289_-\|metal-dependent-hydrolase	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080030.1\|6878366_6879758_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP042914.1\|WP_068142685.1\|6889287_6890505_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|238957
NZ_CP042914.1\|WP_068130236.1\|6874206_6876582_+\|DUF1553-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042914.1\|WP_068142680.1\|6880593_6882660_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|376386
NZ_CP042914.1\|WP_068142686.1\|6883955_6884186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068142684.1\|6887197_6888139_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP042914.1\|WP_068142682.1\|6884302_6885097_+\|FliA/WhiG-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274153
NZ_CP042914.1\|WP_068130471.1\|6891996_6892908_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042914.1\|WP_068142681.1\|6882719_6883760_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349782
NZ_CP042914.1\|WP_068132965.1\|6870379_6871840_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068142683.1\|6885303_6886032_+\|hypothetical-protein	gnl\|CDD\|377585	pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of bacterial proteins related to YacP. This family is uncharacterized functionally, but it has been suggested that these proteins are nucleases due to them containing a NYN domain. NYN (for N4BP1, YacP-like Nuclease) domains were discovered by Anantharaman and Aravind. Based on gene neighborhoods it was suggested that the bacterial YacP proteins interact with the Ribonuclease III and TrmH methylase in a processome complex that catalyzes the maturation of rRNA and tRNA.	3.76737e-14
NZ_CP042914.1\|WP_068142687.1\|6886187_6887183_-\|phosphoesterase	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.19052e-52
NZ_CP042914.1\|WP_084425984.1\|6890634_6891903_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.551e-88
NZ_CP042914.1\|WP_084425912.1\|6872710_6873910_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	4.8503e-142
NZ_CP042914.1\|WP_084425988.1\|6894476_6894995_+\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	5.21697e-20
NZ_CP042914.1\|WP_068130111.1\|6876592_6878110_+\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	3.71997e-169
NZ_CP042914.1\|WP_068130462.1\|6893000_6893441_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	6.9805e-92
NZ_CP042914.1\|WP_068130077.1\|6895115_6896522_+\|IS4-family-transposase	gnl\|CDD\|373239	pfam14706, Tnp_DNA_bind, Transposase DNA-binding. This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.	7.28599e-14
NZ_CP042914.1\|WP_084428265.1\|6888283_6889120_-\|nickel-pincer-cofactor-biosynthesis-protein-LarB	gnl\|CDD\|224605	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only].	6.40238e-64
NZ_CP042914.1\|WP_148080030.1\|6878366_6879758_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.54948e-11
NZ_CP042914.1\|WP_068142685.1\|6889287_6890505_+\|argininosuccinate-synthase	gnl\|CDD\|238957	cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.	0
NZ_CP042914.1\|WP_068130236.1\|6874206_6876582_+\|DUF1553-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	8.57524e-104
NZ_CP042914.1\|WP_068142680.1\|6880593_6882660_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|376386	pfam00771, FHIPEP, FHIPEP family.	0
NZ_CP042914.1\|WP_068142684.1\|6887197_6888139_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.27474e-117
NZ_CP042914.1\|WP_068142682.1\|6884302_6885097_+\|FliA/WhiG-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274153	TIGR02479, RNA_polymerase_sigma_factor_WhiG, RNA polymerase sigma factor, FliA/WhiG family. Most members of this family are the flagellar operon sigma factor FliA, controlling transcription of bacterial flagellar genes by RNA polymerase. An exception is the sigma factor WhiG in the genus Streptomyces, involved in the production of sporulating aerial mycelium.	5.4308e-94
NZ_CP042914.1\|WP_068130471.1\|6891996_6892908_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	9.53885e-12
NZ_CP042914.1\|WP_068142681.1\|6882719_6883760_+\|hypothetical-protein	gnl\|CDD\|349782	cd17873, FlhF, signal-recognition particle GTPase FlhF. FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).	3.47484e-84
NZ_CP042914.1\|WP_068132965.1\|6870379_6871840_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	5.33962e-165

>NZ_CP042914.1|WP_068142683.1|6885303_6886032_+|hypothetical-protein
MLLLIDGYNLLHQSDLLGRSRAGEWLRQARQRLLRQLAKHLGPDLGAATCIVFDAEDPPPGRPSQLHFQSIDVRFAVDYPEADDLLEELIAQHPAPTRLTVVSSDHRVQRAILRRRGHCFDADHWYHRLVSQGPVLGIPWPAGSAIDPAAEVEKEKPQDLSAAEAARWLATFGIAPPTPQEPQPQPPQEPANAPEPAKRKPKPKPKATSKRPQPPPDKRDPNRKLDAPADNPFPEGYGEDLL
>NZ_CP042914.1|WP_068142682.1|6884302_6885097_+|FliA/WhiG-family-RNA-polymerase-sigma-factor
MATTTADEEIKQVWADFKTTEKNGPGYEDLRNRLVERYMPLVRYNGERIWQRLPDGVELDDLLSAGIFGLMDAIDAFDMERGVKFETYCVPRIRGAMLDELRTMDWVPRLVRSKASKLNEARKKLETKHGRPPTVQELAAQLEITVAECEKMQSDANAVGLVSLNKKWYETDSYKDVREIDILEDQKGEDPTIRVQKNDLMRLVTKGLNRNERLIIILYYYEELTMKEIGATLDLSESRVSQMHSSIVNRLQSQLGTRRIEFGA
>NZ_CP042914.1|WP_068142686.1|6883955_6884186_+|hypothetical-protein
MALVVLRGGLRGEVAADVLCEGLLAMMIFVGIGAIAGMIADHLLQHTVETQFRARVQWFQQEQQKRDAQNQETDES
>NZ_CP042914.1|WP_068142681.1|6882719_6883760_+|hypothetical-protein
MHIRTFRAANLQAALAEIRTQMGPQAAVLHTRQVRDGWMGWLGRTQVEVTAGLRDAAEQPRRERLQRSENSPHRETEMLRERLIRVGVSDSLAQRWSQRSEATMRQQHSGQAVAFSQPSLEAALKRVVASDLHCGPPIRSLPSQRRVVALVGPTGVGKTTTVAKLAAGFRLQQQRRVGLLTIDTYRIAAVQQLQAYADIMDLPMQVVERPEQMQTSLEALGDVDLVLIDTAGRSPNFAARIDQLRVMLQAARPDETHLVVSATSSAASTARVLQGFASIRPTATIVTKLDETEQTAGVLAALVEHQAAPLSYLTNGQQVPDDIESSDREKLVGPLLGTTAVLPVAA
>NZ_CP042914.1|WP_068142680.1|6880593_6882660_+|flagellar-biosynthesis-protein-FlhA
MDFARRYRDLILPVGIIACLLVILVPLPPFLMDVLLAANITIGLIVLLTTVYVATPLEFSIFPSLLLATTLARLVLNVATTRLILTRADTEEMDAAGGVIQGFGEFVAGDRIEVGLIIFGIIMLIQFIVITKGATRISEVAARFALDGMPGRQMAIDADMNAGLIDEKEAQRRREEVGAQADFYGAMDGASKFVRGDAIAGLVIMVINVCGGLYIGMFQAEMTMGEAGSLYTKLTIGDGLVSQVPALLISLAAGLLVTRSAQKTNLPEQFLSQLFGNPRALMVAGAFLALMILTRLPRVPMATLAVGCIGLAVVMNRQTARDESDHQRREEEEQAAASAPPEKRVEDYLTVDPMELSIGIGLLQLADPARGGDLMERIAGVRNAIAADIGIVLPKVRVRDDMQLGDLEYEIRIASNPVARAAVYPDRFLAIDSGATTGVIDGEPTRDPTFGEPAVWIDPARREQAAIYGYTTVQPGSVLATHLQEISRRHADELLSRDATKHLLDELKEVAPAVVDELIPAQMKLAEVQQVLHMLLREDVPIRQLGIILETLGDSAGRTKDPILLTEFVRHRLARTISTRYRDQQGRLFVVALDPAVEDRIAAGVEHSERGLFVRMSPQAIETTCQRIEQATKKLTTAGHSPIVLVSPRIRPALRQITASALPRLRVLSYNEITQDTTIESVGIVTDV
>NZ_CP042914.1|WP_148080030.1|6878366_6879758_-|IS4-family-transposase
MVAPTNESDPDSPFCRAKTLLADLIGLPQLQAAFEGQEPSHAKRVYTQAPTLWLLVMQRLGGGLTLEQVVKDLINNHSDILPENRRVTEGKLSENNSAYNKARQNLPIEVIEEFSHRVCDHLARRAEPAFLDQRVFILDGTTITLPPTQELKKAFPPAMNKHGESVWPVACLMVAHEMQTGCALVPQVDPMYGSKNSSEPKQAEKIIDRLPENSIVLADSGFGIFSVAFHCQLRAKPFVFRLTKQRYKAYIKKATLIEETEGCRTYHLIWKPTAKERKKHPALPADAAVEAFIHQVDLENEQTLELVTNVETDGVSVGELYRRRYDIEFDIRDLKVTMDSENIRAKSVDTVKKELLGSVIAYNLVTQFRKQAAKLINVKPRRLSFSGVWTTFRYDLLYKDFNTLEEWNLAYQGALVSASGRKLPNRKEPRSYPRLAHARRQKTTKFQKSLRKSNTKDPTPPPD
>NZ_CP042914.1|WP_068130111.1|6876592_6878110_+|DUF1501-domain-containing-protein
MFAPSEPLRQLSQTLTRRQLFGRSALGLGTAALAGLIGDELGADVVSDRPPQGLHHPAKAKTVIYLFMSGGPSQLDMWDYKPKLNDRFNQQLPDHIRDGQRVTGMTANQKNGLPICPSKYKFTKYDNNDRGVWISELLPHTAKVAKELCVVHSTFTEAINHDPAITFIQTGSQIPGRPSLGAWLSYGLGSMNENLPHYVVMHAKTRHAEQSLFNRLWGTGFMPSDHQGMLMRSEGDPVLYLSNPAGVSRDDRRAQLDALTALNEAQHQRLADPEVLSRIKQHEMAYRMQASVPELTDLSQETEETIRLYGDDARTPGTFAACCLNARRLAERGVRVIQIFHRGWDAHGNLPGEHGSQCRDIDQGCAGLIADLKQRGMLDETLVIWGGEFGRTVYCQGNLTRDNYGRDHHPRCFTTWLAGGGVQPGITYGQTDDYGYNLADADGNPLVPQPTPDRWTPGTMHIHDLNATILHQLGIDHKRLTYRYQGRDFRLTDVHGHVLKDLLVG
>NZ_CP042914.1|WP_068130236.1|6874206_6876582_+|DUF1553-domain-containing-protein
MRWLSGCSRLLLFAIAWCEIHSSQVAAADSPPDDKPAVDFARQILPILSDKCFVCHGPDAKNDTDLRLDSFAAATADLGGYRAIDPDAPAESTLLTRIHSADDPMPPADADKQLSEPERELLDRWVGQGGAFASHWAFVAPQRPQVDPGDKHSAIDLFVRRQLQSAGHAPAPPADPETLARRLALTLTGLPPEPQQLAEYLADPSEAAYLRLVDQLLASPRFGEHQARYWLDAVRYGDTHGLHLDNRRGIYPYRDWVVRAFNDNLPLDDFITWQLAGDLLPDPSLEQQVATGFVRMNPSTGEGGAISEEFQMKNNFDRVETFGTVFLGMTFNCVRCHTHKYDPILHTEYYRLMAFFNNTAEPALDGNSYTYGPTVKVPADQQQWEQWRSLIAQRQQLDAAAAEQAEPASDQDRQQAEQLAAQLQELETKFTTSLVAKELPQPRATRLLHRGEYNQPTGDPLLPGTPVVMSPFPDDAPRNRLGLARWLTAPDNPLVTRVLVNRIWQRTLGNALVRTPEDFGLQGQQPTHPQLLDWLAVELRESGWDLKHLLRLIVTSQTFRQSSARRPDLQDPENRLLARGPSYRLDAEVLRDMGLWASGLLDPKMGGEGVKPYQPSGMWLAMAHPASNTKKYERDHGRKLYRRSLYVYWKRTSPHPMMTLFDAPDRETSCVRRSRTSTAVQSLGMLNETQRIEIGRRLAARLLHHRDSDDQRLAMLFELLACRPPTPVESAACTQLLQTLTARYTAHPDDAERLLAIGDVARDDALDLPSHAAWTQVCVTVLASDLAIMLY
>NZ_CP042914.1|WP_084425912.1|6872710_6873910_+|group-II-intron-reverse-transcriptase/maturase
MALMGKKIKVHSLTGRIDDRLMRQSFLAVKRNRGAAGIDKVSIGMFEENLDANLASLKRDLKTKGTFVPKPLRRVFIPKDARGTAYRPLGIPAVRDRVAQEVIRRLLEPIFEPLFHDCSFGFRPKRSCHLAIERLLSFHEAGDRITLDADIAGFFDNIPHKLIVDAVAEEVSDGNILDLVKRFLAAGVMENGVFKPTTIGTPQGGVISPLLANVVLNKLDWRLEKAGYRFVRYADDFVVACETKTQAQAALELVAEVMTELGLSLSPEKTKIASYGRGYDFLGFRLSSKSRTMRAKSLEKFKTKIREITRRCNNLDARVIEKLNQVIRGTANYFATEFSTCVKLYQKLDKWIRMRVRSMKFKRKLSFDNYRLKRRYFDNKLGLLRLLDFTATSMSKTRA
>NZ_CP042914.1|WP_068132965.1|6870379_6871840_+|pyruvate-kinase
MPRPTLQEASTKIIATVGPACDSLEKLVELIESGVDVFRINTAHGSRESHAETLRKIRQASEQSSFPVGVLLDLSGPKIRLGTLLQDPLPCEMGMELSFVSGDEPNDATELTSSYKRLLQELQVGDNVMLADGIVSMVVVSKTDDRAVCRVTSPGVLRSRQGINLPGVKLSVSSMRPEDVDNAIWGAQAGIDFISLSFVRSASDVRSLKDLLTSYESMALVIAKIEKREAMEDLDAIVEAADGVMVARGDLGVEIDVSETPVAQKRIIDACTEKMKPVIVATQMLDSMHHCPRPTRAEASDVANAILDGADCCMLSGETAIGDFPIEAVQTMRRIMLHTERNLLTELSPDRFKVNSKYPITSAVAQSAIMLAESVSAKVLVIATRSGGTAWVESKQRSLVPTLGVSDNEEALRRMNLFWGVKPVRVSQLDDATQLFDEITAWGCRSQMLNGGDLAVLVTGNGVMDRAHNLVMVHTVDPDKCKIAWN
>NZ_CP042914.1|WP_068142687.1|6886187_6887183_-|phosphoesterase
MSVNWKAFVNQISHYESFVLTSHIRPDCDALGSELAMAEVLRTVGKQVQIVNAHRTPPALQFLDPAGRIDVLGDSIEPEEVKADCLMVLDTSAWQQLGDMADVVRASKADKMVVDHHVGEDDLGATMYKDYHSEATGHLVIQAADALNVPLTRAIASPAFAAIATDTGWFRFGSVTSETYRVIARLVDAGVVPAEVYGDLYERDTLGRMRLRGRILSRTTAELDGKLVHTYVTKQDFEETGALPNDTEDAINLTMAVGGTEAAVIMIEQVKGGFKLSFRSRCPLDCNAIAQQFNGGGHKAAAGAFVEGSLKEVQDKVLPVVRERLQAALNG
>NZ_CP042914.1|WP_068142684.1|6887197_6888139_-|bifunctional-riboflavin-kinase/FAD-synthetase
MVQTLIRSFDDLSDEARGGAVSIGNFDGVHQGHASLVEQLCEAARRVGGPAVVVTFDPHPAAILRPEHEPARLTTVERRAELLARLGVQHVIVCPVDQEFLNLSAEQFFQGVVVDRLRSRAVVEGPNFFFGRNREGDLPRLRELSQQAGVELTVVEPCQRAEEMISSSQIRRLLAAGRIEDANQRLTAHYQLTGRVETGDQRGRQLGFPTANLHGLQTLVPAAGVYATRVHIDGQAYAAATHIGPNPTFGGTADKVEVHVLSFNGDLYGRLLSVDFLTHVRDIAQFTSVQELKQQLQRDIAQVESMVAESAPE
>NZ_CP042914.1|WP_084428265.1|6888283_6889120_-|nickel-pincer-cofactor-biosynthesis-protein-LarB
MPSSNSSNAPPEHLLRLFQMVAAGQLTADDATLQAAAGGFGPHAMAPIEGATVDVGRVQRCGFGEVIYGEGKSAALITEIARRLLPQQREVLVTRCESQVAEQVANDFACHRYDDVARTLRLSESPLDAPSLEASSETSSANGSRVAVVCAGSTDLPVAREAAETLAWMGIRVDRIDDIGVAGPQRLLAVVDRLRLARAIVVVAGMEGALPSAVAGHVAVPVVAVPTSVGYGASLGGWTALLGMLTSCASNVSVVNIDAGFKGGYVAGLIASQGDPAC
>NZ_CP042914.1|WP_068142685.1|6889287_6890505_+|argininosuccinate-synthase
MSKSCVLAYSGGLDTSVILGWLQDEGYDVHAVYVDLGQPCEDREATMQKARDCGAVSSRIVDVREELCRDFAFPVLAWQAKYESIYLLGTSIARPLISKVCLEVAREVGATAYAHGATGKGNDQCRFQLAAEALNPHVEMIAPWRIKAFRDAFPGRTELIAYCEQKNIPVKASTAKPYSSDENVLHISYEAGRLEELDVNGVETVDFGMGVSPQEAPDKVEEVTIGVEAGVPVSLNGKTVSALEMVEQLNTIGGRNGVGRIDMIENRFVGMKSRGVYESPGMTILYDALMYIEQLTLDRDLLHLRDRLAPEVAEMVYYGFWYTPKLDALMAFIREAQQPVTGEVTLQMYKGNIMVSKRSSPNSLYDDEIATMEGGGSYNQDDAEGFLRIQGLPSRVQGTVRPRNY
>NZ_CP042914.1|WP_084425984.1|6890634_6891903_-|ISL3-family-transposase
MSQLSWIFYHGSMNELHAHYRLLLGLDDQWQVQNVDLQMEANSVVIQLRHSGGKLCCPECQDECSRADTAPTRQWRHLDTMQFETIIEAAIPRSKCDRCGVKTIAVPWAGKHSRFTLMFEAFAIKVLQAASSVSAATKLLKVSWKTAHELMQRGVERGLQRRDTDPIETLGIDEKSFGKGQDYVSLMVDLEGSRVLEVVKDRSEASCDKLFDSLTDEQKSGIRAVAVDFWQAFRNSIVKQVPQAKIVHDHFHISQYLGEAVDLVRRRENKLLRSEGINDLTGTRQLWLYNEETLDDATQKQIEDIRQVAIKTARAWGIKEMFRDFWTYRSGAWAKKFFDRWYAWAIRSKLDPIKKVARMLKKHLAGLLAYFEYSITNAKSEAFNGRVQAIKSAARGFRNFENYRTRILFYCGALKMEPDFSH
>NZ_CP042914.1|WP_068130471.1|6891996_6892908_-|DUF1559-domain-containing-protein
MSYLFTCPHCKSQTLVGDEYSGLAGDCAVCREAVELPDFAGLGPVDDQPVRESWMAHRSVRLAIAGTITLALTACLLFVFIKFSSSTLAQLQANRRKQQDASNLVNIAKALNAYAADYGQYPPPVTNDANGQPMHSWRVLILPYLGQEELYRQYDMEQSWDANMNQIYSTPAVYQASAGQGFGFETAYFLVTGPGTLFPTPTTSLSPEDLVDDPAKTILVVEGKPPAATGLNWMEPVDLDIRKMQFAIAGNDGVEIGGQHQRGAVVATVDGRSHFLRDALSPVEIRALLSPAGGEPLADDILD
>NZ_CP042914.1|WP_068130462.1|6893000_6893441_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRCVLQRVSQARVEIDGEVVGSIERGLMVLVGVGQGDTEKDCLALADKTAVLRIFPDEDDKMNRSLLDVQGQALVVSQFTLLADCRKGRRPAFTAAAAPDLATELYERYCQRLREQGIDVQTGVFAADMQVHLTNDGPVTILLESP
>NZ_CP042914.1|WP_068130474.1|6893548_6894289_-|metal-dependent-hydrolase
MAGFKAHITGSTMVGVAYGYWGTMHQSMPIESGMLAAGLCAVSGMLPDLDSDSGIPLRETSNFASALVPMLMIDRFRALEMTPEEMALAAMLIYLFMRFVLVGIFKKYTVHRGMWHSLPAAASAGLLAYLVIPCPSEAIRVYKSLAVTLGFMTHLVMDEIWSVQMRSGRTRLKKSFGTALKFSSNNAWANISTYAKLALLAYLAWTDHGVLRKHEHTHERQSINVPYMAQPAEQWLEKLRGPISRR
>NZ_CP042914.1|WP_084425988.1|6894476_6894995_+|CvpA-family-protein
METYDILMLVVLAGAAIFGAIKGFAWQLASIGSIVLSYVVAVRYREPFSQAIAADPPWNRLLAMLILYVGTSLVIWVAFRMISKTIDRMKLREFDRHAGAAFGLGKGILYCTLITLFAATLLGPAASEKIVQSRSGYYIAKLLARGNGVMPTEVQQVIGPYIERFDADKADK
>NZ_CP042914.1|WP_068130077.1|6895115_6896522_+|IS4-family-transposase
MTIEPATIEHEFDTIDFGHKSRNDRSKELLQALFANPQASINAACDKWCAAKGAYRFLDNPKADSQEILAAHRRATIKRIKSQKVVCVAQDTTELDFNGHAPDDVKCLNMADRRGLYDHSSVAFTPEKLCLGVLDVEFFDRSEDSLGKGSQRKSDPIEEKESFRWLQGYRRCCELASQCPETQVVSLADREGDIYDIFVEAEQHDNPADFVIRSKQVRCLPEKDDEAGGDSYKKIRSEVAKTDLVTTRQVELPATAQRAARMATLEIRAIRTKIKPPHARRSAIPEVTLSVVLVQEVDGPQDGTDLNWLLLSSLPIDDYRDVLRIVDYYVARWPVEMFFRVLKSGCRVEDIQLKTKARLIRALMFYKVVAWRIMFITFLGRECPELPCDVVFSDAEWKSVWKVAKESEPPKSAPELSQFIPVLAQLGGYNGRKHDGPPGMETIWRGTRRMMDFALAWQAFGPPKSSVH

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Crispr_ID: NZ_CP042914_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_18

7510248-7510401

Orphan

Consensus_repeat	Method
TGTGGGCACAACGGTGGGAGGCTCCTGCGGCTACGGGTTAAACGAAGCCGACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_18

>merge|NZ_CP042914|18|7510248-7510401|CRISPRCasFinder
TGTGGGCACAACGGTGGGAGGCTCCTGCGGCTACGGGTTAAACGAAGCCGACGCCATGGCAGAGCACGCCTGCGTCTGCGGAGCCTGTCATGCGTGATGGTGTGGGCACAACGGTGCGAGGCTCCTGCGGCTACGGGTTAAACGAAGCCGACGC

>NZ_CP042914|18|18|7510248-7510401|CRISPRCasFinder
TGTGGGCACAACGGTGGGAGGCTCCTGCGGCTACGGGTTAAACGAAGCCGACGC	CATGGCAGAGCACGCCTGCGTCTGCGGAGCCTGTCATGCGTGATGG
TGTGGGCACAACGGTGCGAGGCTCCTGCGGCTACGGGTTAAACGAAGCCGACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068129961.1\|7499580_7500336_-\|glucosamine-6-phosphate-deaminase	unknown	unknown	gnl\|CDD\|179028
NZ_CP042914.1\|WP_084428186.1\|7497008_7497755_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068129930.1\|7514985_7517013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP042914.1\|WP_084425894.1\|7511649_7512888_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP042914.1\|WP_068129953.1\|7504568_7506686_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379155
NZ_CP042914.1\|WP_068129959.1\|7500403_7501681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334596
NZ_CP042914.1\|WP_068129937.1\|7512996_7513887_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP042914.1\|WP_084425892.1\|7520201_7523555_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP042914.1\|WP_084425895.1\|7501880_7504460_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NZ_CP042914.1\|WP_068129924.1\|7517485_7518601_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP042914.1\|WP_148080592.1\|7506946_7508503_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068129944.1\|7508556_7508889_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP042914.1\|WP_068130007.1\|7510537_7511593_-\|serine-protease	unknown	unknown	gnl\|CDD\|379052
NZ_CP042914.1\|WP_068129941.1\|7509265_7510090_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|115027
NZ_CP042914.1\|WP_068129964.1\|7498675_7499584_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238434
NZ_CP042914.1\|WP_068129920.1\|7518866_7520189_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP042914.1\|WP_084425890.1\|7523600_7524365_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226970
NZ_CP042914.1\|WP_068129933.1\|7513911_7514706_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP042914.1\|WP_068129927.1\|7517170_7517479_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235183
NZ_CP042914.1\|WP_068142486.1\|7497756_7498344_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068129961.1\|7499580_7500336_-\|glucosamine-6-phosphate-deaminase	gnl\|CDD\|179028	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional.	5.48096e-96
NZ_CP042914.1\|WP_068129959.1\|7500403_7501681_+\|hypothetical-protein	gnl\|CDD\|334596	pfam01566, Nramp, Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.	7.15814e-29
NZ_CP042914.1\|WP_068129930.1\|7514985_7517013_-\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	7.7084e-25
NZ_CP042914.1\|WP_084425894.1\|7511649_7512888_-\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.03879e-36
NZ_CP042914.1\|WP_068129953.1\|7504568_7506686_+\|hypothetical-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	5.76279e-09
NZ_CP042914.1\|WP_068129920.1\|7518866_7520189_+\|AAA-family-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	3.87039e-09
NZ_CP042914.1\|WP_068129937.1\|7512996_7513887_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.8854e-60
NZ_CP042914.1\|WP_084425892.1\|7520201_7523555_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.61962e-50
NZ_CP042914.1\|WP_068129924.1\|7517485_7518601_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.02856e-45
NZ_CP042914.1\|WP_084425895.1\|7501880_7504460_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.60592e-47
NZ_CP042914.1\|WP_068129944.1\|7508556_7508889_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	6.45234e-16
NZ_CP042914.1\|WP_068130007.1\|7510537_7511593_-\|serine-protease	gnl\|CDD\|379052	pfam13180, PDZ_2, PDZ domain.	2.2188e-09
NZ_CP042914.1\|WP_068129941.1\|7509265_7510090_+\|alpha/beta-hydrolase	gnl\|CDD\|115027	pfam06342, DUF1057, Alpha/beta hydrolase of unknown function (DUF1057). This family consists of several Caenorhabditis elegans specific proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	2.73278e-05
NZ_CP042914.1\|WP_068129964.1\|7498675_7499584_-\|amidohydrolase-family-protein	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	4.52573e-73
NZ_CP042914.1\|WP_084425890.1\|7523600_7524365_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226970	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	7.80021e-58
NZ_CP042914.1\|WP_068129933.1\|7513911_7514706_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	7.54158e-31
NZ_CP042914.1\|WP_068129927.1\|7517170_7517479_+\|hypothetical-protein	gnl\|CDD\|235183	PRK03976, rpl37ae, 50S ribosomal protein L37Ae; Reviewed.	0.00411819
NZ_CP042914.1\|WP_068142486.1\|7497756_7498344_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.08246e-32

>NZ_CP042914.1|WP_068129941.1|7509265_7510090_+|alpha/beta-hydrolase
MTDPNWKARCQRRLAGRVVLKPSTHDIDHGDQQRVELDAGPCGKIEAFVHAERPLHEAAPELLVLKLPGTGGRAERSSQLPVNYLDDVHAEVWTWNPPGYGGSPGRASFDTMPIAALNFFDAVTDRRADADTKIWLMGNSLGCAVALLQASQRSVHGLILRNPPPLVQTIPHVAVYGRPGWLHPLLRGPAQWIAQGVPEDMDTLHTAAHCSAPAVFIQSQADTLVPPRLQAMVRDNYAGPQRLIEWEGLEHHGIPQEEHLQQLAEGIDWLRAQE
>NZ_CP042914.1|WP_068129944.1|7508556_7508889_+|Uma2-family-endonuclease
MSSVQKFAPRYTIEQYVQWQGDWELWEGVAIAMTPSPSGIHQGVVTRLSRILGNAIEAEQCDAEPFVELDWIISDDTVVRPDVLVVCGTPPDRHLEQTPTMVAEVLSDCP
>NZ_CP042914.1|WP_148080592.1|7506946_7508503_+|hypothetical-protein
MMNRNGRRQFLANVGSGMLVGSLGTGLAGDLGIHTAWADDAADDRLTFGELEPLVALMQETPLGKLQQVLLGEIDRGTDLATLIAAGSLANARTFGGHDYVGFHTFMALTPALEMAGELPEARRALPVLKVLYRNTDRIQQFGGSSSEVLRRLDDSKHEGQRPTAEALQAATRQADVEAAERMMAALGEQSAGGVFNRVQHSVQDEADVHRVVLAWRAWAAIGVVGEQHAGTLLRQSVHYCLKNSQRRIRDGKPDPQLWTLLPRLLDQYKLLSQPVGKRRGDDQWIDELAWTIFQSDRGQAADAAAQALADGYAPDQVGEAMSVAANLLLLHDPGRSKAGDGDKVKGSVHGASVGVHASDAANAWRNIARVSNPRNTIASLLVGAYHTAGQSPRVQRQRWPLKMDVVEKLDDKQELLRQTEQAVRNRDQALAGAAVQRYADVGGSPRAISDVLLSFATSEDGALHAEKYYRTATEEFANTRASLRWRQLVGLARVSASEYGTPAPGYQEACEMLNVPA
>NZ_CP042914.1|WP_068129953.1|7504568_7506686_+|hypothetical-protein
MSLRYLLAFALLSIAVPARAELRVGAKVVDVSPPQFPVLVNGGMLNKTAGQINTPVSARAIVVDDGQQRLAIVVVDSCMMPRPLLDDAKRLAAKRTDIQPDHMLISATHTHTAPSCMGALGTDADPAYVSYLREKLAEAIAAAEAELQPARVGFATGDAAPYTALRRWVRRSDRVADDPFGNPTVRANMHSANNWDDVTGPSGPEDPELSLIAFQSPDGQPIAMLANFSMHYFGDRPISADYFGLFANRVQDRLAAEANDKTLQPVAIMSHGCSGDIWRRDYALRPEDRPDFTIDGFTDDLVEIALEAYEDVEYQTDATIAMAEQRLPMKYRVPDKQLLQWAQKIIEPLGDNPPTNTTEVYAREQVRLHQLQATEVVVQALRIGDIGIATTPTETYALTGLKLKLQSPLKHTMVIELANGGDGYIPPPEQHVLGGYNTWAARSAGLEVTAEPKITAAGLALLEQVSGQPRHVPAWPQTSEAKTIASLGPLAHYRMNEFEGPRAIDAGAQHRDGIYESGVVFFLEGAPVQGRETKNVRELNRAAHFAGGRLRTRFEDLGDSYSVAMWFWNGMPNEARETTGWLFSRDHEHTVSPQGDHLGIGGTATKPGCLVYQHGGDSEAVQVGSTPLERWSWNRVLFVRDGQTVRVYLNDNAKPEITAELDPQTASPPAPIFFGGRSDNQSNFEGRIDEVAVFGEALEATSFAE
>NZ_CP042914.1|WP_084425895.1|7501880_7504460_-|ComEC/Rec2-family-competence-protein
MRYHTHMGGTATQTNDLKGRADNAERHLLRRYPTITLAMSAAAGIHAGLWAWQSAILAGFAAVLLFWAGRRSRMRRLGWLAALCCVAAAFALHGGQQRRQIHQASLTAYLTDHWRPAALRLIVDGRVERRPSALAELRGRGPQWQSLFAGRVSAIRVGAHWRPVEGGVRVMVDGDATDYLPGDELQVLGDIQSITPPRNPGEPDMRSIYAARGQQGRVRVDSLQQLQRQHRRFQLQRPFAAFGASGERILSRHLSERCSPLAAALVLGRREAVERSTRDRLLETGTAHLLSVSGLHLGMVALAASWLLAISSISQNKQYFTILVVCIAYAAVTGGRPPVMRAALLIGAVLLGMWSGRMVHPLNALAVAALGLLLWNPANLSQVGVHLSFLAVGTLIFASRSVTAMAASGQSNDPLERLLDARLGALRRFSTTSGRRLWLAFRFSFWVWAVSAPLVWYHFHVVSPISILANVLLGLPLMVALIAGLVAVLGGVCWDALAVIPAIVCELSLHFIIGIIDALASVPLGHFWLPSPPSWWVLIFYLLIAAGLLLPATWPRSQLLLLWLVGWTCVALPLATLYRSSHLHELPDDSLEATFIDVGHGTSVLVRHSTGTTWLYDCGRLGDPAQSSRPIESVLWDRGIIRLDAIVLSHADADHYNAVPGLLQRFFVGRIITPPGMLATDERGLEAVRQAIAEAGVEVIEQHAGEQLQLDHTAQTIRILHPTRQRLAGNDNVNSLVLQIDHGGRSLILPGDLETPGTEAVMQYPRPPGSGILMAPHHGSLQQDMRPLLDWSRPRTVVVSGGTRAGRPEVLQRLAQNGADVYVTSLQGAITTRIESDGTVTVQPWWPGEQVFVNQPFGR
>NZ_CP042914.1|WP_068129959.1|7500403_7501681_+|hypothetical-protein
MQNATTSDSSRRTLGDWLRSIGPAVVVAAVVLGPGTITVASRVGCQHGYSLGWLVLTTSALMAIMTVAALFAGVSTKKTPGKRLRERFGSPLTIAIGLVLFLIVALFQSSNNRALLLAAEFFVPSLKTSQWGSIAFLLAFNVAVIAFFLLARDVYKVIETAMLMMVGLMIVCFGINALAGGVQPGGAATGLVPTPSSMNAALQALTGDVRALMATTFSVAGAFYQCYLVRERRWTTGELRFRAVDSCVGIATLGILTMLIMWTAAAALHGKVAPEQVTDIASLADSLRPTFGQTATLVFATGIMAGAVSSFVGNALIGGTVFSDCLGIGSKASQPFPRRLTVAALLVGAVIASLSVFAIESNVNFIVIAQGLTTLGLPVMALALLWLLIDSETSPLWLIAGTVVGVCVTFALALATVLKLTGVIV
>NZ_CP042914.1|WP_068129961.1|7499580_7500336_-|glucosamine-6-phosphate-deaminase
MRIEIASDVDEMGRLAAERAAAILRDAISDNRRARMIVATGASQFTVLEHLTKQPDIDWQLVDGFHLDEYIGIDRSHPASFCRYLDERLVQKVPLGSFQFLDAGDSPQENVQRIGELVSGQPIDVALVGIGENGHLAFNDPPADFETTDPYLIVELDEPCRQQQVGEGWFGSLAEVPTHAISMSVQQIMKSRAIICSVPDARKAAAVQAAVEGPVTPDLPASILQKHANCTLLLDPPAAEKLSEATRGAAT
>NZ_CP042914.1|WP_068129964.1|7498675_7499584_-|amidohydrolase-family-protein
MSDFVDIQVNGYAGVDFNDDALSADDLHRACQAMRSDGVTAFLPTVITDTLDAMQRRLRQLVKRTQEDDLASQMVAGFHVEGPFLNPQLGYIGAHPTESTQLASVDAAKRLLDAAEGRVRIVTLAPERDPGAATTRFLADQQILVSAGHCDASLDELRRGIDAGLSMFTHLGNGCPVNLPRHDNIIQRVLAVADQLRIGLIADGHHIPLFALQNYLRQIPVANVILTTDAIAAAGLGPGTYPLAGRMVRVAENDAPRFDDSGQLAGSAATMPAMVQNLQAMGIDEPTIAAYCGGNARRVLEG
>NZ_CP042914.1|WP_068142486.1|7497756_7498344_+|NUDIX-hydrolase
MSADQPAEDEPTAELPREHGPWKILASHEAYRDPWVRLRQDDVLRPDGLPGSYVVVNLKPGVCVLALDDNGRVHLTREFHYGVGRVTLEAVSGGVEPGDSPEATAHRELAEELGITAERLTMLGNMDPFTANVVSPTVLYLAEGLRFGTPQPEGTEQITRVEMSLDEAVQRVMDSEITHGPSCVVILKAAMGTSS
>NZ_CP042914.1|WP_084428186.1|7497008_7497755_+|hypothetical-protein
MRRAFVWGWLVGLSSVVGGASVATAQVDSAQVDSAQADSAAMEVLVEEDFESGAERWQPTDAKKWRVDTEGEGNNKNHVYHLLGKSDYAPPHRSPHSISLLKDTIVGDFELTAKVKTLQTSRAHRDMCVFFGYQNPAQFYYVHLGERTDDHANQIFVVDKAPRIKISEKTNPGTPWKDDTWHDLKIVRRVSDGLIEIYFDDMDKPHMVAHDKRFAWGQVGLGSFDDLGLWDDVQLRGVRVKAAATPSP
>NZ_CP042914.1|WP_068130007.1|7510537_7511593_-|serine-protease
MHLNRICRFGLLLPLLASGLFSGNLAAEDLGTPDWMRNRLSTRISNRRDNGQMMRLVAPLAEKAGAATVQVLSDGKPVALGAIVSTDGYVLTKRSELSADPLRVRLADGRLMQARIAAVRRSVDLALLHIDNVRGLQRVEFSEQEPVIGSFLISAGRGDSPIGFGVMGVRPRRVGHVGRLGVALRNDPQGQALVDGVWPASGADDAGVLPGDRIIAVNGHDEAGQKRVISALRGMYPGEIVRLTIQRDETTVELEAQIRDFSLMQESENDARVNGARSRRLSGFDRVLQHDTVLEPDQCGGPVLNTEGQVVGLNIARAGRVVSYALPGSLVLPQLIEMLKEARGTVPATAN
>NZ_CP042914.1|WP_084425894.1|7511649_7512888_-|PDZ-domain-containing-protein
MAFECHPCPRELPPLRRAVGRRLRTGFLIGLIATVGLLATSPIAPAQQINQPAQQVGEPAQQVVQPAPQVNQLAQQQAEAPEQLRQAAADGATYVAPPEQLVTIIREGRVPSTLDQLLALETQQKKIAKRAAACTVNIQINGHEAGNTQGCGVIISEDGFVLTAAHVAERPGLRVKLTLADGRSFTARTLGMNRKVDAGLIRIDPGQNQGKPWPHASLGDSKHLRPGMWCIATGHPGGYDIHRGMVTRVGRILSIRTGSIVTDCALIGGDSGGPLFDMQGRLIAVHSRIGNDVADNLHVPVHHYEDSWDDLYAGKSWGFLPGFRPVLGVRGNPNSQLAVVDSVRDNSPAEQAGIMAGDIIERLGPDVITDFDSLKQAVAQTMPGKRVIVRLQRNGEIKRLIVEIGRDTRYDE
>NZ_CP042914.1|WP_068129937.1|7512996_7513887_+|SDR-family-oxidoreductase
MSNEPLSAASGPGRALIVGCGYLGRRVASRLLAEGWQVAATTRKQSRVKELERMGVEPVVADWTDRRSLLALPPHDRVLVAVAYDAASGASRYETQFLGFRNLLLATDPAADLCYVSTTGVFHQSGGEWVDERSPCRPRQASARVHLEAEQLLTVHRRRGPWCVLRLAGIYGPDRVPRVRNVLSGQPIEADPQSFLNLIHVEDAAAAVIECWRAGPHKRQRYYVVSDGVPVRREAFYSEVSRITGGPQPQFQAPNSPTASRRGGDKRIWNAAVRRDLLPQLQFPSYRDGLRAILSH
>NZ_CP042914.1|WP_068129933.1|7513911_7514706_+|MBL-fold-metallo-hydrolase
MLSRKPLFPGVIELNFQAGEVFGCNVYLVFDGDEWLLIDIGYEETVDDFIEVIRQLDFPLSRCKTLVATHADVDHIQGLAKAKQVLRTSVTSHPNAVKPLQSGDRLLTLAEIEAQGLQMDMPPVEIEHQVNDGDIIQVGEKQLEVWHTPGHTDSQLAFRLDKILLSGDNIYRDGCVGAIDAHHGSDIKAFIKSLTRIRDSDVEWLLPSHGPMFRKDTAMLDATIERLKGYLTMADFGTLAESWPLMDEWEDEVAEGKLPEGLGG
>NZ_CP042914.1|WP_068129930.1|7514985_7517013_-|hypothetical-protein
MRYFALTAALVCLLTGGSIANGQTPSDHAHDHDPPHAHPHGHDHSHPHGSAPFTTRQNSRVLPLAKEDDVFHFVVYGDRTGGVPEGLRVLEQAVRDTNLLDPDLVMTVGDLIQGYNTTEEWMPQMKEYKAIMDRLEMRWFPVAGNHDVYWRGQGKAPEGQHENSYEKHFGPLWYSFKHKNAGFIVLYSDEGDRATNRKGFSDGKLQTMSDEQLEFLQQALEQLQDQQHVFVFLHHPRWIGGGYTGGNWNVVHEKLKAAGNVSAVFAGHIHHMRFDGPKDGIAYYTLATTGGHLGAEIPDAGYLHHLNVVTVRPDGYRVAALPIGAVIDPTEFTEAFLGQVALARSIVPKQESNNVMLQLDGSATGQVTLRLQNPCERAVEGTLSLVAGGSWTSSLDHHHFEIQPGQQVAVPVQLRRQAGRENDVTLPRVSVELEYIGESARVRLPEAITPIAVSLAGVPADYFAGELNQCLKVSGESSAVRVDSKALEVPNGPLTLEAWVRPSEIAGHRGVVAKTESSEFALFMDEGVPQFDIHLGGRYVTAAAKKPLVANRWTHLAGVFDGQTVTLFVDGQQVASTPGKGKRRTNGLPLYVGADPSRGGQPTRSFDGLLDEVRVSSAAVYEGDFEPARRLVPDADTRLLLHLDRSVGPFVLDHSAAAGHATMGSNSALVPVPSE
>NZ_CP042914.1|WP_068129927.1|7517170_7517479_+|hypothetical-protein
MSPSPNPFEPPPAPRPESIDPANGNFAPCPRCGQPIAQRVGFTLWGGVLGPKLFTHVKCQTCGNKYNGKTGQSNASVIAVYTVGSIVVGAFVAIVAMRMLTI
>NZ_CP042914.1|WP_068129924.1|7517485_7518601_-|EAL-domain-containing-protein
MTWTSPASATDSLRRSTVASQDVWFLSGATRGEEEVRHIPVDENPFVVGRKPGVALSLHFQTVSGHHASLWVENGELFVKDLDSTNGTYVNGTRIDRPTPVCEEDLVHFAEAPFRVRRQSATGFSCGTIAENVCDQALALVQFDRLMSQRLVVPHFQLILDLRNRASVGFEVLGRGRVFGLESVGAMFQAAEQLNLEVELSRLLRWEGVRVGRDLPERPTLYVNTHPKEMADEGLIESLGKLREMAGNTPLVLEIHEASVTEPAMMKKLHARLKDLGMQLAYDDFGAGQARLAELIEARPDCLKFDISLIRGIDQADPHRYQMLETLVRMVRDLDIVALAEGIETPEEAQACEDIGFDLAQGFYFGRPAPA
>NZ_CP042914.1|WP_068129920.1|7518866_7520189_+|AAA-family-ATPase
MSAVLRDTHTIESGLLNGLLSDDTFWPVTPRNLAETGLSESFVEALVLKTVLTIGTLSGRNIAERTGLPFRVIEPMLERLRTRKLVAHVRPAPFNDYYYSLTDAGQRGAQVHMQQCSYAGPAPVPLTDYVLSVEAQAAGLEPIDRDQLQEALQKISYQDELLDQLGPAINSNSGLFLYGPPGNGKTTVARCLTQCLGQEIWIPHAILDDGNLIKLQDDAFHREAPVPEGDGVIKAQEWDRRWLRIQRPTVVVGGELVMDNLEVRHDKRSNICEAPLQLKSNCGCLLIDDFGRQRIQPEELLNRWIVPLENRHDYLTLPTGKKIQTPFEQLIIFSTNLNPDQLVDEAFLRRVPYKIFVDDPSEDEFRAITRAVAESFGFSHGSEAAEHLLAMYRKHDRRRRRCHPRDLLTQVNNFCKYRKLKPQLRPEFLDKACLSYFSEL
>NZ_CP042914.1|WP_084425892.1|7520201_7523555_+|protein-kinase
MNPQQPPSATSIASSLPNGTHASVPGGGKPPTTPAAPAATGTPGPAVSTSGPSASTSVPGAPPKHAAQQPAAPEAAAAASPTALVLRAGYEPIPGYILQEPIGKGGFGEVWSALAPGGFRKAIKFVFGARGEKRAGRELRSLEHMTGVNHPFLLTLERYEFVDERLVIVSELADGSLEDVYNRQIERGSCGIPRAALLSYLSDAADALDYLHGQFQLQHLDIKPGNLLLVGGHVKVADFGLLKDLRDDACSVIGGLTPIYAPPEVFDGRPSHHSDQYSLAVMYQELLTGKRPFTGRTIAQLATQHVHSTPNLDSLPPGDRPIIARALEKDPQRRYESCHDLVEALRTPRGKSIQVTSDGRSEAIGGDTQTGSFVAAAGQPAAAVENLPGLSGTVLNGGVSRTANSLVVAVGGTGADVLVDLHQRIKTAGVEPAERIDSVLVDTDQEKLHVIRLLEGPDGRSPCKTLYTPLRAPTEYRNRGTSHLRSISRRWIYNVPRSLSTEGMRPLGRLAMVDHGQAIMETLRAAVAKSAGDSPEPPTVYLTGSLTGGTGSGMLLDLAYLLRHLLDECGLEQSEIIPLFAGSSARPHSRNPLGNADTAAALKELSFYLKPENGYAGDSGAGWPSVPAARSPLHNTYVIANADSTDGNATAAEIIGEYIWHSSQGAGRLLAAARKEAHEPVSPLSSLQASTRSVGIVSLSQGGDCAPESLAAILARQTLLPWIGQPNEARMLAPSLAERFGPKCGFSLDSFQQQMWHSWSADPQTRRVELLKSIATWPISTLVSEQALAAAFEPHLQAMRSGPPQLDQVESRMACLRKELAVRLQDRRIDLNTALAVVQKLSEQMKAEIANVRGLPITATSEPATNTACEPQTSAELEAMMEDAVRRMDTMLLRTAKEYVAERAAELVHQLDSCAAGLQRQIDVVSEVTARLGSQEPDDAISPLPEELRSRWDNYVDQLHNTLAANLLCLPLLQPEPGIDVDTLLQATLEASGQWSRGSGEQGDAVAEHAARSLQDKLDAALVAVRPSLLDLGGKQRLLLLVGSQRQREELAAQVEAAAAIPVTTVVVPGTQAALIHEAQSIPLDAMIDRLIASLGGNQKIASRLQSRVDVQWPAER
>NZ_CP042914.1|WP_084425890.1|7523600_7524365_+|ATP-binding-cassette-domain-containing-protein
MSSPADRQSVAGQDSEPHPPPGSAPRGGLLAQHLVRTDRASSRRLLDDVSVQLTPGQRVGLMGPSGSGKSLLLRALAHLDPLDGGSLLWRGQPVHRDAIPGFRASVLLLLQHPVMASGTVEDQCTLPYRLRHFRHLGKSFDRRAALNLVESSGRHAAFLDQPAARLSGGERQLVALIRALLLEPQVLLLDEPTSAMDSATVAVAERWIADWSAADAQRSFVWVTHDAPQARRVADTFWTLQAGRLVDTPPQESP

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Crispr_ID: NZ_CP042914_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042914_19

8195552-8195641

Orphan

Consensus_repeat	Method
TGGATGTCAGCCTGGAAAGGCCGACGTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042914_19

>merge|NZ_CP042914|19|8195552-8195641|CRISPRCasFinder
TGGATGTCAGCCTGGAAAGGCCGACGTACGTCAGGCCTTCTAGCCTGACAAGAAGGGCCGTGGATGTCAGCCTGGAAAGGCCGACGTACG

>NZ_CP042914|19|19|8195552-8195641|CRISPRCasFinder
TGGATGTCAGCCTGGAAAGGCCGACGTACG	TCAGGCCTTCTAGCCTGACAAGAAGGGCCG
TGGATGTCAGCCTGGAAAGGCCGACGTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042914.1\|WP_068135929.1\|8203827_8205030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135933.1\|8205521_8206301_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP042914.1\|WP_084427005.1\|8189050_8190394_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|369446
NZ_CP042914.1\|WP_084427007.1\|8196588_8198595_-\|amylosucrase	unknown	unknown	gnl\|CDD\|200463
NZ_CP042914.1\|WP_148080644.1\|8203239_8203782_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135922.1\|8201090_8202650_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|235549
NZ_CP042914.1\|WP_068135894.1\|8188661_8188919_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080642.1\|8192048_8192534_+\|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
NZ_CP042914.1\|WP_068135913.1\|8194725_8195514_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042914.1\|WP_084427069.1\|8209317_8210319_-\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP042914.1\|WP_068135937.1\|8207123_8208023_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|274447
NZ_CP042914.1\|WP_084427009.1\|8198575_8200735_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|131525
NZ_CP042914.1\|WP_068135901.1\|8192536_8192938_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135910.1\|8194408_8194639_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_148080643.1\|8193062_8193284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135942.1\|8208019_8209306_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP042914.1\|WP_068135907.1\|8193499_8193784_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NZ_CP042914.1\|WP_068136267.1\|8193902_8194328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042914.1\|WP_068135934.1\|8206467_8207043_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|378981
NZ_CP042914.1\|WP_068135895.1\|8191005_8192010_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919

Protein	Function_ID	Function_description	E-value
NZ_CP042914.1\|WP_068135933.1\|8205521_8206301_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.70445e-11
NZ_CP042914.1\|WP_084427005.1\|8189050_8190394_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|369446	pfam07642, BBP2, Putative beta-barrel porin-2, OmpL-like. bbp2. BBP2 is a family of putative porin proteins that are likely to be outer membrane beta barrel proteins porins.	1.63897e-77
NZ_CP042914.1\|WP_084427007.1\|8196588_8198595_-\|amylosucrase	gnl\|CDD\|200463	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase. Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP042914.1\|WP_068135907.1\|8193499_8193784_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	0.000480864
NZ_CP042914.1\|WP_068135922.1\|8201090_8202650_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	1.87525e-139
NZ_CP042914.1\|WP_148080642.1\|8192048_8192534_+\|carboxypeptidase-like-regulatory-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	0.000172052
NZ_CP042914.1\|WP_068135913.1\|8194725_8195514_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	1.62918e-57
NZ_CP042914.1\|WP_084427069.1\|8209317_8210319_-\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	8.7401e-56
NZ_CP042914.1\|WP_068135937.1\|8207123_8208023_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	9.69817e-08
NZ_CP042914.1\|WP_084427009.1\|8198575_8200735_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|131525	TIGR02472, putative_sucrose-phosphate_synthase, sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.	0
NZ_CP042914.1\|WP_068135942.1\|8208019_8209306_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	6.36382e-146
NZ_CP042914.1\|WP_068135934.1\|8206467_8207043_-\|DinB-family-protein	gnl\|CDD\|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	2.30481e-10
NZ_CP042914.1\|WP_068135895.1\|8191005_8192010_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	1.58146e-53

>NZ_CP042914.1|WP_068135913.1|8194725_8195514_+|DUF1559-domain-containing-protein
MSSGQPVPQNPYPQQPQPTGPYPAPPPKSNTGLVLLIIGLVAIPVMLVCGGILVALLLPAVQAGREAARRMACSNNMKQIGLAMHNYHDAYGSFPPAYTVDESGQRLHSWRTLILPFMEQQALHESIDFSKPWDDPANQMAANTMIPAYACPSSAIDPTMTSYVAVVDPSAVMSGTDGIKIRAILDGTSNTIMVTEVASEDAVPWMSPNDISMPAFVNMAASGRGNHPGGGNVLFCDGSVQFMTENTDANVRSSLVTRDAQD
>NZ_CP042914.1|WP_068135910.1|8194408_8194639_-|hypothetical-protein
MVCTEVVYRSYEGLGSIRFQLTRRAGRQTLAAEDLLNLAISQRYFDQVAVFCPLHSDQILLGNEMTDVLRKTIAVS
>NZ_CP042914.1|WP_068136267.1|8193902_8194328_+|hypothetical-protein
MLVCPPQLSADEPARTAAQAATQPVAEPQTMSFWMGKKLDHSQGILRALAESDFEAIAEHARQLQRLNKVEGFVRRRNPDYTAHLQYFARISKELTQQAEQENIEGTTLAFNQLTVSCVRCHQTLRQHDQQPDLSKPAAAK
>NZ_CP042914.1|WP_068135907.1|8193499_8193784_+|BON-domain-containing-protein
MSTTPSAHTDPHSATAKREPLRPVEPVLIRAQQALAASEYAELRQLDCEFFAGVLTLRGTVSSFYMKQLAQESLRGLDDVHCIANQVRVADRRQ
>NZ_CP042914.1|WP_148080643.1|8193062_8193284_-|hypothetical-protein
MAKHDVSVDMPPRPLKREDVIFTVKRDGAMLGTLEVSNGSLVWFPAGASSGCKMSWLNFDRLMQDNAAAKEKR
>NZ_CP042914.1|WP_068135901.1|8192536_8192938_+|hypothetical-protein
MSTTIQSLPTRPSWISAIGPFASQNAVSLIVLSMVGIGLIGAYDFYLTIITANFLPEMEQNEIGRQIMGLDDDIIRSQRIALFLALKFAGTVLVLSVLGWMGMVRDRRGVPVALGVLGFQLYLLFVLTAPSMG
>NZ_CP042914.1|WP_148080642.1|8192048_8192534_+|carboxypeptidase-like-regulatory-domain-containing-protein
MSFHFPAPRCRGVLPNGAHLAACLRRSRWITVLLVGSWLTAFSGCGPSSSEPLAAVKGTVTAQGQPLVGADVMFIPEGGVGAPSGGKTDAQGAFELQYTNGESGAVIGKHRVVISVAADEPPPPMGGSAPPPRQTTSPEYYKQAEVTEAGENEFTFEVAGT
>NZ_CP042914.1|WP_068135895.1|8191005_8192010_+|DUF1559-domain-containing-protein
MSKIQMLGRRPGFTLVELLVVIAIIGVLVGLLLPAVQAAREAARRMQCSNNMKQIGLSIHNYHDTFRCLPPGTLAQDINQQRQPSWIVRTFPFMEQNNVFERAIFAGTDWTGQDLIDLNWELKHTVRVETYNCPSSDMPLTRSETPRGDTQGLGAPSTLEVQLSSYAGIAGTYLDPRDMASAPSPNYSVYGRATFNGVMASIGGNALPRALRFASITDGTSNTICVGEQSSFYSDSKTDCRASNHAGGMWASGPGGDTDWWLNVTVVRYPINWDGTTSSACPGYQKHTITRSNHPGGAQVLLSDGAVRFATETMDFALYNRLSARNDGLPTGEF
>NZ_CP042914.1|WP_084427005.1|8189050_8190394_+|outer-membrane-beta-barrel-protein
MKLGKWTLLAAIFGGLYITEASAQQPYAVQPVGFHQAVACDCGEPACGCETTACEPACGCEDPACGCETVSCDPACGCEDLAACDSGCDSACDAPGGCGGSCCLGDCDLGDPCTLFGEHDNFSVGGWLQLGYHTKANGLFNTRPDELQLQQAWLFAEKTLDTSDGFDFGGRIDYLYGTDGQNTQAFGSDPRGWDNDWDNGGDYGSAMPQLYGEVGYGDLSIKAGHFYTIIGWEVVPATGNFFYSHAYTFNNSEPFTHTGALATYNASEDVTVWGGYSLGWDSGFDDNGDAFLGGASLGLTDDVTLIYAAVGGRFGEARFNGVEKGYMHSIVADVAVTDSLQYIFQSDLLDTEDVAGDPARQTFGINQYLIKTLSDCWGVGGRFEWWNTETAGNDSDVYALTMGLNYRPHANVVIRPEIRWDWDDDQVAGLEDGEEQTTFGIDSIVTF
>NZ_CP042914.1|WP_068135894.1|8188661_8188919_+|hypothetical-protein
MNTVVSLATPISTATEKRAIVLDNVSFVGKKEKELTRELGSIKVQIAPPSDENGSADQAVNSDFAGNSWFAVGKKPILTLTRSVA
>NZ_CP042914.1|WP_084427007.1|8196588_8198595_-|amylosucrase
MIGSNLNGTATVGAPGASRGIQFESELSLKRLLPRIEPVWQAAGTDAKVQHEFETRLEEHWLPLFVLLRELYGDRYDFFYHLEQILLTAAQAWANRPAALRAVDHHRINEPDWFMSEKMVGGALYVDLFSDNLGQLRQHIGYFQSLGLTYLHLMPLFAVRPGDNDGGYAISNYRSVDPRLGTLEDLKLLADDLREAGITLVLDFVFNHTSDDHEWAQRAQAGDLEYQQFYYIFPDREMPDQYERTLREIFPTVRRGNFTWHDGMQQWVWTTFNNFQWDLNYHNPAVFRAMLEEMFFIADTGVDILRLDAVAFIWKQMGTSCENLPQAHLLIQAFNRLARIATPGLLFKSEAIVHPDEVVKYIGRDECQISYNPTLMALLWESLATREVKLLSQSLSHRHKLPTETAWVNYLRCHDDIGWTFDDADAAAIGINAYNHRQFLNRFYTGQFEGSFARGIPFQENLATGDMRIAGTMASLAGLELAIEEDDETAKQEAIGRILLLQGVTLSIGGIPLLYLGEEWGMLNDYDFVKDPAKAGDTRWVHRPKMKWEFLEELDDSVTVEGGSIRRRLYRALQNMIAVRSSLPALAGQNMELVNTGNPHVLSFVRHRDAHRLIVVANFCERPQSMSGNMLRTAGLGRFFEDALSGQTYGTSQDLHIEPYQILWLKRV
>NZ_CP042914.1|WP_084427009.1|8198575_8200735_-|HAD-IIB-family-hydrolase
MNLLAEDNSLKISLISLHGLIRAKDPPLGFDSDTGGQIKYVLELARELAAQPQVREVELLTRQIIDPRLDEQYAQLEEPLCENAKIVRIPFGPKRYLKKESLWPYLEMFIDQTLIHFRRHGLPNIIHGHYADAGLAGAHLAQLLHVPFIFTGHSLGRVKRQRLSLGKASPESLERKYKFTQRIEAEEIALETASMVVTSTNQEIQQQYELYDHYQPERMEVIPPGVDLTEFSPLDADWEPPAFAKKIDCFLRDPDKPMILAMARPDERKNLEMLVDVYGQSEELQEIANLVLVMGTRTDMNELPKSQRHVIHNVLHKIDLYDLYGRVAYPKMHTPTDVPDLYRLAVSTHGVFVNPALTEPFGLTLLEAGATGLPIVATNDGGPRDIIANCNNGLLIDPMDGKGIEKSLLRVLTEPEQWQQWSEAGIAGTRQHYAWNNHAHRYLRDLNDILENSPTPALQQTSKRRLPEFDRIIITDLDNTLTGDPEGLAEFNDMIREHDHIGFGIATGRRLDSALQMIEELNLPQPDLIDTDAGTQLHYGQNLTPDRSWRQQIGFAWKPDEIRELLDTLPGFHLQDETHQSEYKISYEIDPENSPSVTEVHKALRGAGLRAKVVLSLGMYLDIIPVRGGSDLSMRHLLWKWGFSPDNVLVAGDSGNDAGMLLGRTLGVVVGNYSPELEEIRNRPRVYFAQAEHARGILEGIHYYQFLDNIVIPNDRIES
>NZ_CP042914.1|WP_068135922.1|8201090_8202650_-|sigma-70-family-RNA-polymerase-sigma-factor
MYQTLLDDFEDDAPAATDVVGNFRKLPHDDSEDESAAITAVEAVEGEVQLDSPDDLLVPDESETWSDDPVRMYLTQMGEIPLLTRREEILLAKRIEETRRRFRSKLLENHYVLVEAYKTLKRVHRGELPFDRTVQVSVTDRLEKEQILGRLPHNLKTLSVLLRRNCHDWRIALSKSTSEERRQEAWRSLAHRRRRAVRLVEELGLRTQRIENRIALLEKFNNRLQELDLLIKAARKTKQGREDRDRLLQERRQILTACQETPTSLNSRVELLKRVYSEYQQAKRELSEGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRAVDKFEYRRGFKFCTYATWWIRQAITRAVADQSRTIRIPVHMVETMSRVRNVARQLLQELGREPTIEETARRAETTIEEARRVLAMSRYPISLDRPVGNSEDSQFGDLLPDGTAESPAIGAAQDMLRDRINNVLKSLSYREREIIKLRYGLGDGYSYTLEEVGHIFKVTRERIRQIEAKAVRKLQQPSRSQDLVGFLD
>NZ_CP042914.1|WP_148080644.1|8203239_8203782_+|hypothetical-protein
MYALPCSCGHVLEVSPGQAGDRLPCPECHQEVVVPLLRDLRQLPRVEQAGEASGGTKPASGGSFATRLLFGLAGFVALAAAGFATFALFSAMAVEVGSSTEEHIERDREILLQASPGDLVESWTEIAKTPMTERFPYYYQQQAFKKAGWQRLMISGYAVAGLAIFVAVVLGVYDRRKSSG
>NZ_CP042914.1|WP_068135929.1|8203827_8205030_-|hypothetical-protein
MNESLSPTPAQDQSRHQFLRWLERAQQGSAALATADSPTVPAAAKAVASSGSLESGEPAAPAGPATVEAIPLGDPQQVRELSPSILGCYHVTAGHSELSGCTLEPRPLLRITWDAEGGQVQHRWYGGDGQPLAAELIERLGLKELEPCEERLRANDAPMVRRWIAAALQTDSGAVGAAPDWLAATVVWCRWASGAVAFRFGNGAEGRSNFAGWAIDFVQGYQRPEKYRCSASGEESFEVLALDDGTVTVPQAVGRCEQSGTSTLLSNLKTCEVSGRQVLADRLAQCPISGLWALPDQLECCVLCGRAVAPGRIESQVCSDCRGGRDIDPDDSLLAGLLAADGSFARYGHWRGWRDEAVAVLIGRRWLGGQLAILYDRQQARVRQVARSGRFSQRWTVDPS
>NZ_CP042914.1|WP_068135933.1|8205521_8206301_-|class-I-SAM-dependent-methyltransferase
MDTVSDCIYDYPKYYDLVFGADCAAELDFIEACAEHFASGTVKRMFEPACGTGRLLYQLARRGYAVGGIDLNPKAVEFCNARLERRGFDDRAQVADMSDFKQRRKWDVAFNTINSFRHLSSEAAAHAHFESMGRAIRKGGLYLLGIHLSPTSIPPSETESWSARRGHLSINTHLWTLDRDRRRRVERFGIRFDVRSPTKQFRIVDELVLRSYTAPQMKRLLARSGCWEIAETYDFAYDIETPIEVDGSCEDVVYVLRRV
>NZ_CP042914.1|WP_068135934.1|8206467_8207043_-|DinB-family-protein
MNTHLPTAEEALLLCRTAAGQIEFARNYTLELLQHTPQELWYQTPEGAPSCVAWQVGHLAVSQYGLLMFRQRGRQPEDLDLIPGRFRKAFGRGSTPPIVPTEAGEAQDAPASTAALPTSDELLQRLADVHTAAMAEIAAISDGQALLEEVDMPYAVYPIKLGAILFCPLHEHIHCGQIGLLRRMLGLPPIR
>NZ_CP042914.1|WP_068135937.1|8207123_8208023_+|cytochrome-c-biogenesis-protein-CcsA
MIEFLSGISVTCFVTSYLIVLVLELTRPWRELPLRRVGMLGFMLVGLVLHLVYLILRAQPSGGEAGLLATWYDWSLLLSWGLAACYLFFLIRRPEATVGYFLLPPVLALVLLAMLVRGFAPFSREEATGIWRNVHAMAMLVGAVAVLLGFLAGVMFLIQSWRLKHKRLGRQRFRLPTLEGLQRLNRKCLYFSTTALGLGLLAGIVMNLNRWGQVGWTERGVIFSGVLLLWLLAATMFEVFYKPARRGRKVSYLTLASFGFLVLAMAAVLTSPHGRQDDSPSQPASLRPAEPSAAVEAQS
>NZ_CP042914.1|WP_068135942.1|8208019_8209306_+|glutamyl-tRNA-reductase
MKLKMIGCNHRQAAVEFREQLSFTAEQAREALAAFRNRFPAAEVVLLSTCNRIELYTGAADGPIPDDQDVAGFLAHQRSLPADGLLDHLVHLDGPEAIEHLFTVAASLDSMVIGEAQIISQVKQAYELACDSGSTGPLTHAAFQAANHVAKRVDRETSIHRRRVSVPSVAVGEVVPEFFDTLSDKSIVLIGAGEMGEETLRYLIDAGAKRIHVVNRSLDRAQEIVGRLAGTAHPWSDLDALLTKADLVVSTTGATDTLIGYDNFLKIHEARYERLLLILDLAVPRDFEHSIGDLAGVYLYSVDDLQSACDHNQQQRQREWPKAKSIIEEETRKFVAEIHHRATGPVIRRLREQAEQLKQEELKRLMGRLQHKEEESAAMQREIQQSFDRLVNKLLHPPLASLKDDAAAGHRGGLLVALRELFKLHDHE
>NZ_CP042914.1|WP_084427069.1|8209317_8210319_-|SMC-Scp-complex-subunit-ScpB
MYRAAPPPVAPPVEDAQTRRQKVEAVLLLAKGPLTLRKIAQLAGLEDATEARTLVRQWNELSDQWGRAMRIESIAGGYQLLTRPQYAPWLRRLGHIPAPIRLSSPAMETLAIVAYRQPVMRASVEAIRGVACGELLRQLMERDLVRISGRSEELGRPFLYSTSKRFLQIFGLHSVDALPNIRFDMLPNTLSDSRTDPSDSSEESDVSIALAPAPLETEDQLTATVGNPTVDPQLAADASPEAIIEDEEDEWDDDDDDDDWDDDDDDWADNEDDDDDDLEDDDDDLDDEDDLDDDEDDDWEEVGDDDEDDLDDEDDLDDDLDDDDDLDEDDDWD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	3567437-3567462	0	1.0
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	5078653-5078678	0	1.0
NZ_CP042914_8	8.1\|2311318\|15\|NZ_CP042914\|CRISPRCasFinder	2311318-2311332	15	NZ_CP042914.1	7040186-7040200	0	1.0
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	433228-433253	1	0.962
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	3230108-3230133	1	0.962
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	4934688-4934713	1	0.962
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	7200443-7200468	1	0.962
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	4050116-4050141	2	0.923
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	NZ_CP042914.1	4448643-4448668	2	0.923

1. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 3567437-3567462, mismatch: 0, identity: 1.0

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacacaagacgcacca	Protospacer
**************************

2. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 5078653-5078678, mismatch: 0, identity: 1.0

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacacaagacgcacca	Protospacer
**************************

3. spacer 8.1|2311318|15|NZ_CP042914|CRISPRCasFinder matches to position: 7040186-7040200, mismatch: 0, identity: 1.0

cttctcgtagctacc	CRISPR spacer
cttctcgtagctacc	Protospacer
***************

4. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 433228-433253, mismatch: 1, identity: 0.962

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacacaaggcgcacca	Protospacer
******************.*******

5. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 3230108-3230133, mismatch: 1, identity: 0.962

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtgtctacacaagacgcacca	Protospacer
*******.******************

6. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 4934688-4934713, mismatch: 1, identity: 0.962

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacgcaagacgcacca	Protospacer
*************.************

7. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 7200443-7200468, mismatch: 1, identity: 0.962

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacacaaggcgcacca	Protospacer
******************.*******

8. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 4050116-4050141, mismatch: 2, identity: 0.923

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacccaaggcgcacca	Protospacer
************* ****.*******

9. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to position: 4448643-4448668, mismatch: 2, identity: 0.923

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtatctacacacggcgcacca	Protospacer
**************** *.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042914_11	11.1\|3655472\|21\|NZ_CP042914\|CRISPRCasFinder	3655472-3655492	21	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	318750-318770	1	0.952
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	FQ857195	Erwinia phage phiEa116, WORKING DRAFT SEQUENCE, 6 unordered pieces	29685-29710	5	0.808
NZ_CP042914_5	5.1\|1015989\|26\|NZ_CP042914\|CRISPRCasFinder	1015989-1016014	26	HQ728263	Erwinia phage vB_EamM-M7, complete genome	26776-26801	5	0.808
NZ_CP042914_11	11.2\|3655519\|34\|NZ_CP042914\|CRISPRCasFinder	3655519-3655552	34	MN585980	Microbacterium phage Gina, complete genome	27592-27625	8	0.765
NZ_CP042914_11	11.2\|3655519\|34\|NZ_CP042914\|CRISPRCasFinder	3655519-3655552	34	MN586059	Microbacterium phage Teamocil, complete genome	27691-27724	8	0.765

1. spacer 11.1|3655472|21|NZ_CP042914|CRISPRCasFinder matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 1, identity: 0.952

accgcgataatcgccctcggc	CRISPR spacer
accgcgatgatcgccctcggc	Protospacer
********.************

2. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to FQ857195 (Erwinia phage phiEa116, WORKING DRAFT SEQUENCE, 6 unordered pieces) position: , mismatch: 5, identity: 0.808

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtttctacacaagacgttgta	Protospacer
******* *************.  .*

3. spacer 5.1|1015989|26|NZ_CP042914|CRISPRCasFinder matches to HQ728263 (Erwinia phage vB_EamM-M7, complete genome) position: , mismatch: 5, identity: 0.808

cattggtatctacacaagacgcacca	CRISPR spacer
cattggtttctacacaagacgttgta	Protospacer
******* *************.  .*

4. spacer 11.2|3655519|34|NZ_CP042914|CRISPRCasFinder matches to MN585980 (Microbacterium phage Gina, complete genome) position: , mismatch: 8, identity: 0.765

ctgacgtcggtggcgagggacgtcggggggacgt	CRISPR spacer
ttgatgtcggtggcgaggaacgtcgcccggtcgc	Protospacer
.***.*************.******   ** **.

5. spacer 11.2|3655519|34|NZ_CP042914|CRISPRCasFinder matches to MN586059 (Microbacterium phage Teamocil, complete genome) position: , mismatch: 8, identity: 0.765

ctgacgtcggtggcgagggacgtcggggggacgt	CRISPR spacer
ttgatgtcggtggcgaggaacgtcgcccggtcgc	Protospacer
.***.*************.******   ** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7308254 : 7394381

Tupanvirus(33.33%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148080030.1\|7308254_7309646_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_162276029.1\|7309863_7310055_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_168215738.1\|7311082_7312456_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_068141962.1\|7312452_7314351_+	hypothetical protein	NA	NA	NA	NA
WP_068141960.1\|7314357_7315365_+	hypothetical protein	NA	NA	NA	NA
WP_084427981.1\|7315600_7318297_-	hypothetical protein	NA	NA	NA	NA
WP_068141958.1\|7318296_7318725_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_084427985.1\|7318732_7319680_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_148080571.1\|7320027_7323318_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_068141956.1\|7323684_7324677_+	NAD-dependent epimerase/dehydratase family protein	A0A2H4UUK0	Bodo_saltans_virus	3.4e-27	31.7
WP_162276027.1\|7324844_7325885_+	diguanylate cyclase	NA	NA	NA	NA
WP_168215739.1\|7325899_7327471_-	hypothetical protein	NA	NA	NA	NA
WP_068141953.1\|7327394_7329071_-	type II and III secretion system protein	A7BJX1	Enterobacteria_phage	1.9e-17	26.0
WP_148080573.1\|7329127_7329658_-	hypothetical protein	NA	NA	NA	NA
WP_068141950.1\|7329870_7330761_-	DUF1571 domain-containing protein	NA	NA	NA	NA
WP_168215740.1\|7331089_7332334_+	beta-lactamase family protein	A0A2K9L1U3	Tupanvirus	1.4e-17	36.5
WP_068141946.1\|7332345_7334616_-	MMPL family transporter	NA	NA	NA	NA
WP_068141943.1\|7334612_7335401_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_068141942.1\|7336023_7338402_-	hypothetical protein	NA	NA	NA	NA
WP_068141940.1\|7338398_7340048_-	hypothetical protein	NA	NA	NA	NA
WP_068141939.1\|7340178_7340508_+	CD225/dispanin family protein	NA	NA	NA	NA
WP_148080574.1\|7340573_7340906_+	DUF2752 domain-containing protein	NA	NA	NA	NA
WP_068141937.1\|7341063_7342332_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_068141935.1\|7342331_7342931_-	response regulator	W8CYM9	Bacillus_phage	2.0e-09	35.4
WP_068141933.1\|7343216_7345061_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_148080575.1\|7345280_7347569_+	hypothetical protein	NA	NA	NA	NA
WP_068141930.1\|7348286_7349345_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_068141929.1\|7349346_7350375_+	DUF4272 domain-containing protein	NA	NA	NA	NA
WP_068141965.1\|7350478_7351993_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	1.8e-83	35.4
WP_068141928.1\|7352228_7353092_+	hypothetical protein	NA	NA	NA	NA
WP_068141927.1\|7353088_7354297_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_068130077.1\|7354490_7355897_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_068130079.1\|7356069_7356327_+	DUF4404 family protein	NA	NA	NA	NA
WP_084425910.1\|7356356_7357844_-	HD domain-containing protein	NA	NA	NA	NA
WP_068130085.1\|7358002_7358674_-	HAD family phosphatase	NA	NA	NA	NA
WP_068130089.1\|7358799_7360479_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_068130077.1\|7360828_7362235_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_068142711.1\|7362570_7363323_+	TIM barrel protein	NA	NA	NA	NA
WP_068142709.1\|7363358_7365776_+	hypothetical protein	NA	NA	NA	NA
WP_068142708.1\|7365852_7367277_+	magnesium chelatase	NA	NA	NA	NA
WP_068142707.1\|7367375_7369115_+	hypothetical protein	NA	NA	NA	NA
WP_068142710.1\|7369436_7369820_+	hypothetical protein	NA	NA	NA	NA
WP_068130672.1\|7370358_7371807_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_068132602.1\|7373678_7375163_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_068132600.1\|7375171_7378237_-	DUF1553 domain-containing protein	NA	NA	NA	NA
WP_084426375.1\|7378645_7379677_+	signal peptidase I	NA	NA	NA	NA
WP_068132595.1\|7379686_7380625_-	ABC transporter ATP-binding protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	8.1e-10	29.4
WP_068132593.1\|7380639_7382907_-	hypothetical protein	NA	NA	NA	NA
WP_068132591.1\|7382903_7383227_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_068132589.1\|7383400_7384717_-	hypothetical protein	NA	NA	NA	NA
WP_084426373.1\|7384745_7385825_-	terpene cyclase/mutase family protein	NA	NA	NA	NA
WP_068132586.1\|7385821_7386538_-	hypothetical protein	NA	NA	NA	NA
WP_068132583.1\|7386530_7389707_-	DUF4175 family protein	NA	NA	NA	NA
WP_148080577.1\|7389873_7391016_+	sulfotransferase	NA	NA	NA	NA
WP_148080756.1\|7391291_7392620_+	DUF1080 domain-containing protein	NA	NA	NA	NA
WP_148080578.1\|7392931_7393684_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_168215741.1\|7393565_7394381_+\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

7477515 : 7551819

Listeria_phage(10.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068130672.1\|7477515_7478964_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_148080588.1\|7479130_7480237_+	lipid-binding SYLF domain-containing protein	NA	NA	NA	NA
WP_068142477.1\|7480332_7482333_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_068142478.1\|7482757_7485796_+	DUF1553 domain-containing protein	NA	NA	NA	NA
WP_068142487.1\|7485967_7487413_+	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_148080589.1\|7487470_7488082_-	hypothetical protein	NA	NA	NA	NA
WP_168215742.1\|7488305_7488719_-	hypothetical protein	NA	NA	NA	NA
WP_148080590.1\|7488868_7489384_-	hypothetical protein	NA	NA	NA	NA
WP_068142488.1\|7489971_7490778_+	DNA adenine methylase	Q8W5X3	Listeria_phage	5.6e-28	32.0
WP_148080591.1\|7490895_7491603_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_084428184.1\|7491871_7493005_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_068142483.1\|7493043_7494882_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.5e-39	27.2
WP_068142484.1\|7495124_7496432_+	hypothetical protein	NA	NA	NA	NA
WP_068142485.1\|7496403_7496787_-	group 1 truncated hemoglobin	NA	NA	NA	NA
WP_084428186.1\|7497008_7497755_+	hypothetical protein	NA	NA	NA	NA
WP_068142486.1\|7497756_7498344_+	NUDIX hydrolase	NA	NA	NA	NA
WP_068129964.1\|7498675_7499584_-	amidohydrolase family protein	NA	NA	NA	NA
WP_068129961.1\|7499580_7500336_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_068129959.1\|7500403_7501681_+	hypothetical protein	NA	NA	NA	NA
WP_084425895.1\|7501880_7504460_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_068129953.1\|7504568_7506686_+	hypothetical protein	NA	NA	NA	NA
WP_148080592.1\|7506946_7508503_+	hypothetical protein	NA	NA	NA	NA
WP_068129944.1\|7508556_7508889_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_068129941.1\|7509265_7510090_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_068130007.1\|7510537_7511593_-\|protease	serine protease	NA	NA	NA	NA
WP_084425894.1\|7511649_7512888_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_068129937.1\|7512996_7513887_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_068129933.1\|7513911_7514706_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_068129930.1\|7514985_7517013_-	hypothetical protein	NA	NA	NA	NA
WP_068129927.1\|7517170_7517479_+	hypothetical protein	NA	NA	NA	NA
WP_068129924.1\|7517485_7518601_-	EAL domain-containing protein	NA	NA	NA	NA
WP_068129920.1\|7518866_7520189_+	AAA family ATPase	NA	NA	NA	NA
WP_084425892.1\|7520201_7523555_+	protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	4.2e-08	26.4
WP_084425890.1\|7523600_7524365_+	ATP-binding cassette domain-containing protein	M1H3A1	Paramecium_bursaria_Chlorella_virus	1.3e-10	29.0
WP_148080593.1\|7524361_7525147_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_068129913.1\|7525718_7527758_-	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	3.5e-66	30.2
WP_068129912.1\|7528279_7529620_+	hypothetical protein	NA	NA	NA	NA
WP_162275849.1\|7529630_7531916_-	protein kinase	A0A1M7XUH0	Cedratvirus	1.8e-10	25.8
WP_068129904.1\|7532173_7532572_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_084425886.1\|7532568_7535355_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_068129899.1\|7535436_7537410_-	DUF1553 domain-containing protein	NA	NA	NA	NA
WP_068129890.1\|7537406_7538849_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_068129887.1\|7539145_7540420_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-113	54.4
WP_162275848.1\|7541444_7542407_-	UbiA family prenyltransferase	NA	NA	NA	NA
WP_068129883.1\|7542703_7546291_+	AAA domain-containing protein	A0A223W0B1	Agrobacterium_phage	7.3e-43	25.2
WP_068129882.1\|7546294_7549570_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	9.9e-55	28.5
WP_084425880.1\|7549566_7551819_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A248SJW6	Salicola_phage	1.2e-51	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042914

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection