CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042984	Histophilus somni strain UOC-KLM-ATR-03 chromosome, complete genome	3 crisprs	cas14j,cas3,DEDDh,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042984_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042984_1

429797-429891

Orphan

Consensus_repeat	Method
TGTAAAATAATGTTTGTCTTGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042984_1

>merge|NZ_CP042984|1|429797-429891|CRISPRCasFinder
TGTAAAATAATGTTTGTCTTGTAAAAAACAATTAAAAAATCAATAAGTTACCATTCCTTAATTGTTCACATTGTAAAATAATGTTTGTCATTGTA

>NZ_CP042984|1|1|429797-429891|CRISPRCasFinder
TGTAAAATAATGTTTGTCTTGTAA	AAAACAATTAAAAAATCAATAAGTTACCATTCCTTAATTGTTCACAT
TGTAAAATAATGTTTGTCATTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042984.1\|WP_075321841.1\|430049_430910_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_CP042984.1\|WP_075294130.1\|426778_427096_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_011609510.1\|437518_438103_+\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP042984.1\|WP_075294131.1\|425580_425865_+\|DNA-helicase-UvrD	unknown	unknown	unknown
NZ_CP042984.1\|WP_132994657.1\|435652_436822_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP042984.1\|WP_132994658.1\|434782_435571_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP042984.1\|WP_147590445.1\|420325_420751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_011609530.1\|419265_419712_+\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
NZ_CP042984.1\|WP_011609517.1\|430976_431807_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NZ_CP042984.1\|WP_147590544.1\|422910_424647_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377845
NZ_CP042984.1\|WP_132995793.1\|424973_425588_+\|DUF4376-domain-containing-protein	unknown	unknown	gnl\|CDD\|373004
NZ_CP042984.1\|WP_011609509.1\|438145_438484_+\|nitrogen-regulatory-protein-P-II	unknown	unknown	gnl\|CDD\|223424
NZ_CP042984.1\|WP_132994656.1\|436822_437458_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NZ_CP042984.1\|WP_132994662.1\|419708_420098_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_075294124.1\|433342_434230_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP042984.1\|WP_075294128.1\|428324_428858_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_011609514.1\|434313_434769_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP042984.1\|WP_132994659.1\|428857_429484_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236875
NZ_CP042984.1\|WP_132994661.1\|420821_422801_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_011609516.1\|431898_433233_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434

Protein	Function_ID	Function_description	E-value
NZ_CP042984.1\|WP_075321841.1\|430049_430910_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP042984.1\|WP_075294124.1\|433342_434230_+\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.18605e-105
NZ_CP042984.1\|WP_011609510.1\|437518_438103_+\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	6.23591e-139
NZ_CP042984.1\|WP_132994657.1\|435652_436822_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NZ_CP042984.1\|WP_132995793.1\|424973_425588_+\|DUF4376-domain-containing-protein	gnl\|CDD\|373004	pfam14301, DUF4376, Domain of unknown function (DUF4376). This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.	4.50142e-27
NZ_CP042984.1\|WP_011609517.1\|430976_431807_+\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.58986e-66
NZ_CP042984.1\|WP_147590544.1\|422910_424647_+\|phage-tail-protein	gnl\|CDD\|377845	pfam07484, Collar, Phage Tail Collar Domain. This region is occasionally found in conjunction with pfam03335. Most of the family appear to be phage tail proteins; however some appear to be involved in other processes. For instance a member from Rhizobium leguminosarum may be involved in plant-microbe interactions. A related protein MrpB is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologs but the intervening sequence is not. Much of the function of phage T4 appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the 'collar'. The domain may bind SO4, however the residues accredited with this vary between the PDB file and the Swiss-Prot entry. The long unconserved region maybe due to domain swapping in and out of a loop or reflective of rapid evolution.	2.97514e-08
NZ_CP042984.1\|WP_011609530.1\|419265_419712_+\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	0.000592147
NZ_CP042984.1\|WP_011609509.1\|438145_438484_+\|nitrogen-regulatory-protein-P-II	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	4.19058e-58
NZ_CP042984.1\|WP_132994656.1\|436822_437458_+\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	3.30136e-112
NZ_CP042984.1\|WP_011609516.1\|431898_433233_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP042984.1\|WP_132994659.1\|428857_429484_+\|hypothetical-protein	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0.0059641
NZ_CP042984.1\|WP_132994658.1\|434782_435571_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	4.41993e-165
NZ_CP042984.1\|WP_011609514.1\|434313_434769_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	1.45148e-87

>NZ_CP042984.1|WP_132994659.1|428857_429484_+|hypothetical-protein
MGFGGILASIAHGLGGGMIKVADEGWKKEADERKNQFYADQKALDREAELILLDRKHQNDINFLHKKNAISQAVNNSPNMKAMNEIKDAFDAMDAGNKEIARLDELLADKSLSKEQREKLTSQRQSIYDHISSVANNKEIWKGIDSGRYGQAILSKHIQMTAPYKKTPSPVAVSQKQANQPIIVPKPDKAQLYGEDIMRRYHNGELLD
>NZ_CP042984.1|WP_075294128.1|428324_428858_+|hypothetical-protein
MGILDNMAQQANAQPQMQQTATLPQTEQTGNMMQMYQFLMQNSMQAIAETAEQRIHEKGPVDGTADLIATAMVSNLQAAQQNGKTIPPQVMLQVAKDIAMQLLQQMGVPEEQLDDVLIDVLFKALDQFGEMSHGMLSAEEEQQYVDMINKISAAEQQRQAQKGENPTALEQAQTGGM
>NZ_CP042984.1|WP_075294130.1|426778_427096_+|hypothetical-protein
MSFWDSAWSVITESAKWMEKNQAATNLMGSVLQGTAGYFLQKEQNKNLMRQQRELLNLKDEMQSKYSAVPEVDSGYGGLVVDETPNLANGGILTEMKKKVDRKGV
>NZ_CP042984.1|WP_075294131.1|425580_425865_+|DNA-helicase-UvrD
MSKLKYWFYHVLIAVDQLLNAVCGGAADETFSSRCYRGAVLAKKPKKRWRVIHKIVETLFFWEKGEHCKIAYQSELERKQYSAEFRAMDNTKTV
>NZ_CP042984.1|WP_132995793.1|424973_425588_+|DUF4376-domain-containing-protein
MNIYFQKQQLSNYQIFPIPQDVENWIEKDVDEKELETHVLVEFNGEYQWVEKSADPMTKWNGKTWVVDEEKMTAHLTQVRAEMREKINALRDEKINGGVFVEAVGKWIDTDATAERNILSVKASYDLFGDMEIAWTCADNSVLMINKEKLMLIWQALMNAKTGNHANALKHKTAMEQSDNPAEYDYSSGWTTSYGEYLKELSNE
>NZ_CP042984.1|WP_147590544.1|422910_424647_+|phage-tail-protein
MPAMRDDGLGFEESPVIPDPTQDNHPVPLHLLKTAEQSVYAARDKVTELAQQVADNNATTEQNTRLAIQSNEQAQQAKTEASQSATQAIDANNQAQQVKTAVQKAKETAVSSMQSAEQSKNQAIQAENLAKKWASNPQNQIVQEGKYSAYHYALEAEKYAEKVKATAEGRKDWQFIDNVPISKDINDSSETNLASAFSVKTAYDKAVEAEKIANGKSNFKIEQGKDNADDYKTDGHYYFASGQNLPDNMXSGQXSXTTNGAWHIEVVSGGQTTAVRQIARKANDTGVKTRFFNGLSWTAWKSVGGDGVPLGAIVAFPKEVKNPTGFLKCDGTTIEQRTYPDLYRTLGDKNTLPNLTRSDVGMTAYFATDEIPNGWVEFDKIRDEVTQEKYPELHKYLTKKYGDIQNVPKAEDRFLRNAANELVVGRVQEDAIKTHSLNYGTNHNSSNYQYHVDNNDTIATGNNKTADNYKIRTNGAIFYSGAEETRPKSLVLKLCIKAKNSFDEVLFWIKAFGAVENQGVLDASAIVQDMQDFKRQAEEKIQFITVQKEEIMHAIQEEMEKSDYSLVKVWEGKNXYIF
>NZ_CP042984.1|WP_132994661.1|420821_422801_+|hypothetical-protein
MKLPQIQSLFVAISGGMDLTTPPIVKANSEAIIALNVQPNYGGGFSRIEGYECLDGMTTPSLMNHFHVNVNHDVPQSAVGKQFLLNDRTCYVLAVNERCLTFAVSGQFEVDVGTTFDLDRQTYQTISKTFLNTGEVKQWQHYQALAFQAGVDNVQAVPGENALRGVVELNEQIIAFRDGENACEVFLATKTGWQSAPATYFVELKDISKPKEFIDGVKFTSGEKQGNVFSAVLSADDSSGHLVVNTALLPEAEIHINGSVAAKVKSCEAVRLTKEKAWTFIYHNFYGGTETAYAYGCNGEQVIEVRPDGIIVPIITQAENPQYIVAHRNHLFIAFSGGQFGHSLVGKPTHWAVLLGSEHFGVGDEITALSSTTGGVLLIGCRHKTTALYGSTRDDWVLKDIAKVGIKSGTLQATFIPIAISRHGIIRVDATEQFGDFKLSETDSGRKLGFKPIENNIVFSSTKAKSNQVRFYSENAFHICMMLQPDGSTKSTYFTYPEKLKGVWQSHHNTFLAFDDGKVYRQSDDCFSFAGKPIEWTVKMAFNHCGSPVHIKSWKSAELQATAQGVLSVQYRFDLDYNADFHAVNLARELSVIGHGGRWNESYWNDFLWSTQEYSTPVLYLSGYSRNLSLSFAGSDLYAPQFELSGLVLNYILRRFHRV
>NZ_CP042984.1|WP_147590445.1|420325_420751_+|hypothetical-protein
MDFAEIHHLFTEISLSLGFSQEDIAEYADNLSELISLWNTQKFIEIYTENKERVFGRAKDSSLAYGSSPYYLGLYHVRLDYKENDPLLVITFDKEDEPELSKVTIRFMVDHDTLFGTAAEKYVQQRMKAIRKRIDDFXQQA
>NZ_CP042984.1|WP_132994662.1|419708_420098_+|hypothetical-protein
MNFLALAQRLRQEMNDSGEGPAQVTGQRGRNLEYVNAIREAWLDIQQCRSWAVQFWQQGFSPDKLQILENTVDTPFIPAQYHLAIVFYAMQSKAISQNAQELILRGQQEWDKYLHLLCRDFLPTLKVGR
>NZ_CP042984.1|WP_011609530.1|419265_419712_+|SAP-domain-containing-protein
MSYPFISFNSTVEQLKTHLREHCGIEKSGSKKELIEAILAFEEENGFVRPNKDVAEHTAPVNNLELPLEKQRKVRIKIAETEQDRSDVYVSINDWDALIKRGVEVVVPEAVYVLLSKAGDQTFTQEKDGSLTEGFSPRYHVTLLGYES
>NZ_CP042984.1|WP_075321841.1|430049_430910_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTQLSLKKIYSGKVRDLYEIDDKRMLMVATDRLSAFDVILDDPIDRKGEILTQISNFWFKKLAHIMPNHFTGETVYDVLPQAEADLVKDRAVVCKRLTPIKIESIVRGYLTGSGLKDYKATGTICGLKLPEGLVEASKLPEPIFTPSSKAKVGDHDINISYAECEQLIGVELAKQVREKAISLYKEAAEYALTKGIIICDTKFEFGLDENGVLTLMDEVLTPDSSRFWSVETYQEGTNPPSFDKQFVRDWLEKSGWNKQAPAPKVPADVIQKTVDKYKEVLDLLTK
>NZ_CP042984.1|WP_011609517.1|430976_431807_+|SDR-family-oxidoreductase
MRAVSIVGLGWLGLTLARHLKNLGWKVKGTKRTHEGVEQMRLIRLEAYHLELTPDINADPDDLTALLSVDALVINIPPSQYFFHLQHYVQGVKNLVNEALLNGLQHIIFISSTSVFPDVSGEFDEQSQIVPQSEMSKALLEIEQWLFELKDVDCDIIRFGGLVGEDRHPVYSLAGKDELSAGNMPINLVHVDDCARAIQLLLETPSSQRLYHLVAPQHPTRAEYYSQIAEKLALEAPHFICSEQDPRRVILANKICRELSFVYQCPDPYLMLFERK
>NZ_CP042984.1|WP_011609516.1|431898_433233_+|argininosuccinate-synthase
MSNTILQHLPIGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYNAIPRKAMEYGAEKARLIDCRNQLAHEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVSAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPSLRIYKPWLDNQFIDELGGRQEMSEFLIANGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSGIRIVKPIMGVAFWRDDVTVKAEEVTVGFEDGVPVTLNGQSFSSAVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTAIHNEDTIEQYRINGLRLGRLLYQGRWFDPQALMLRETAQRWVARAVTGEVTLELRRGNDYSILNTVSPNMTYHPERLSMEKVENAPFDPSDRIGQLTMRNLDITDTRDKLGIYTHTGLLTVGKDSMLPQLDKK
>NZ_CP042984.1|WP_075294124.1|433342_434230_+|DUF535-domain-containing-protein
MKNLFSFPSFYQFSNERRFLKRLRTRIRYYFYRLTCFKECQIFVTYLNHNPLWIDIFTKSYNRCDAVLRKYCDNRFNKKQRVQAIMDNFSVAEQVFGRSFSQLLVEKDKVLLAELTDELDLYLAINQIDPFEGFFAVNIRNKQGQRIYDASFSFLAGNKLLITSVQGPSDDNSQELIKSTTKQLHGVRPMFMLVNVYKLLAKELNYELLGIAHKNQGKYRWNDNARLLFNYDDFWQENNALLNPQGYWQLPVVIERKTLEDIQSKKRSMYRKRYEMFDFIEKNITEIFGKENLNK
>NZ_CP042984.1|WP_011609514.1|434313_434769_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MTVTTERIARIIESKEIMTLLPHRYPFLLVDRVTDYEEGKWLTAIKNVSVNEPCFTGHFPDQPILPGVLILEALAQAMGILAFKTHELSNKELFYFAGVDEARFKRPILPGDQMMLKVEVIRERRGITAFTGVASVNGEVACEAKLMCARR
>NZ_CP042984.1|WP_132994658.1|434782_435571_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MIHSTAKIHPSSIIEEGAKIGENVVIGPFCIVGSDVQIGKGTTLYSHVVVKGVTTIGEDNQIFQFASIGEVNQDLKYQGEPTKTIIGHRNRIRESVTIHRGTVQGGGVTRIGDDNLLMINAHIAHDCQIGNRCILANNATLAGHVELGDFVIVGGMSAIHQFVIVGAHVMLGGGSMVSQDVPPYVMAQGNHARPFGVNIEGLKRRGFDKPTLHAIRNVYKLIYRSGKTLEEVIPEIENYAQTESAVSFFLDFFNRSTRGIIR
>NZ_CP042984.1|WP_132994657.1|435652_436822_+|lipid-A-disaccharide-synthase
MIDKKNITIGIVAGEVSGDILGAGLIRALKIQYPQARFIGIAGKNMLAEGCKTLVDMEEIAVMGLVEVIKYLPRLLKIRRLVIDTMLAEKPDIFIGIDAPDFNLDIELKLKKQGIKTLHYVSPSVWAWRQKRIFKIAQATNLVLAFLPFEKAFYDRFNVPCRFVGHTMADAIDLQPDRQDACFQLNLEPKHRYVAILVGSREAEVQFLTPPFLQTAQLIKQRFPDVQFLVPLVNEKRRKQFEQIKAQIAPHLEVIFLDGQARQTMIVAEASLLASGTASLECMLCKSPMVVGYKMKPFTYFLAKRLVKTKYISLPNLLADDMLVPEMIQEDCTAEKLAEKLSVYLEQTESGIKNRQHLIQQFTQLHQLIRCDADKQAAQAVIDLLNDEV
>NZ_CP042984.1|WP_132994656.1|436822_437458_+|ribonuclease-HII
MTNVFIYPNVEFIAGVDEVGRGPLVGAVVTAAVILDPHNPIEGLKDSKKLSEKKRLLLAEEIKQKALAWSLGRAEPAEIDKLNILHATMLAMQRAVENLKIQPHFVLVDGNRIPQLPMSAQAVIKGDSLVAEISAASILAKVARDQEMIELDRRYPEYAFAQHKGYPTKLHLERLAQFGVLPEYRRSFAPVKKLLSTLLSKNHEYIFKIQK
>NZ_CP042984.1|WP_011609510.1|437518_438103_+|molybdopterin-adenylyltransferase
MATLLKIGLVSVSDRASQGVYQDQGIPELLEWLKSALCDPFEVESRLIPDEQTLIEKTLCELVDDCHCHLVLTTGGTGPVKRDVTPDATLAVADREMPGFGEQMRQVSLHFVPTAILSRQVGVIRRNSLILNLPGQPKAIKETLEGVKDEHGNVIVKGIFSAVPYCLQLIDGIYIDTDPNVIESFRPKSARRTL
>NZ_CP042984.1|WP_011609509.1|438145_438484_+|nitrogen-regulatory-protein-P-II
MKKIEAIIKPFKLDDVRESLADIGITGMTVTEVRGFGRQKGHTELYRGAEYMVDFLPKVKMEIIVPDEIVEQCIEAIIETAQTGKIGDGKIFVYDVNRVIRIRTREENEEAL

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Crispr_ID: NZ_CP042984_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042984_2

633881-633964

TypeV

Consensus_repeat	Method
AAGCCATACCATTTGAACCGCCG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP042984_2

>merge|NZ_CP042984|2|633881-633964|CRISPRCasFinder
AAGCCATACCATTTGAACCGCCGTCCTGTGTACTTACACTACCTGACYCAWTTGCACSRMMAAGCCATACCATTTGAACCACCG

>NZ_CP042984|2|2|633881-633964|CRISPRCasFinder
AAGCCATACCATTTGAACCGCCG	TCCTGTGTACTTACACTACCTGACYCAWTTGCACSRMM
AAGCCATACCATTTGAACCACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042984.1\|WP_011608638.1\|646984_647656_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP042984.1\|WP_132995236.1\|629061_631773_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP042984.1\|WP_132995234.1\|627106_628483_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP042984.1\|WP_075293968.1\|645081_645315_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_011609346.1\|623941_625204_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP042984.1\|WP_011608642.1\|650023_650989_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP042984.1\|WP_011608637.1\|644023_644407_-\|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl\|CDD\|182983
NZ_CP042984.1\|WP_011608641.1\|649014_649911_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP042984.1\|WP_011609342.1\|628583_629060_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP042984.1\|WP_011609349.1\|619881_621789_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP042984.1\|WP_148417623.1\|631860_632979_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377158
NZ_CP042984.1\|WP_132995232.1\|626053_627097_+\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|225569
NZ_CP042984.1\|WP_132995228.1\|621967_623221_-\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NZ_CP042984.1\|WP_132995513.1\|641853_643920_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP042984.1\|WP_132995230.1\|623225_623837_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|225645
NZ_CP042984.1\|WP_011609345.1\|625230_625911_-\|TIGR00153-family-protein	unknown	unknown	gnl\|CDD\|272932
NZ_CP042984.1\|WP_075293967.1\|644746_645076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042984.1\|WP_132995515.1\|647671_648448_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP042984.1\|WP_148417583.1\|640692_640830_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379020
NZ_CP042984.1\|WP_075319838.1\|645551_646688_+\|transposase	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NZ_CP042984.1\|WP_011608638.1\|646984_647656_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	3.05248e-153
NZ_CP042984.1\|WP_132995236.1\|629061_631773_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP042984.1\|WP_132995234.1\|627106_628483_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP042984.1\|WP_011609346.1\|623941_625204_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.33729e-50
NZ_CP042984.1\|WP_011608642.1\|650023_650989_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP042984.1\|WP_011608637.1\|644023_644407_-\|autonomous-glycyl-radical-cofactor-GrcA	gnl\|CDD\|182983	PRK11127, PRK11127, autonomous glycyl radical cofactor GrcA; Provisional.	4.47215e-88
NZ_CP042984.1\|WP_011608641.1\|649014_649911_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	5.99926e-123
NZ_CP042984.1\|WP_011609342.1\|628583_629060_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	3.81668e-106
NZ_CP042984.1\|WP_011609349.1\|619881_621789_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP042984.1\|WP_148417623.1\|631860_632979_-\|hypothetical-protein	gnl\|CDD\|377158	pfam03895, YadA_anchor, YadA-like membrane anchor domain. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerization.	1.80939e-17
NZ_CP042984.1\|WP_132995232.1\|626053_627097_+\|inorganic-triphosphatase	gnl\|CDD\|225569	COG3025, COG3025, Uncharacterized conserved protein [Function unknown].	1.05349e-90
NZ_CP042984.1\|WP_132995228.1\|621967_623221_-\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NZ_CP042984.1\|WP_132995513.1\|641853_643920_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP042984.1\|WP_132995230.1\|623225_623837_-\|SH3-domain-containing-protein	gnl\|CDD\|225645	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms].	3.1095e-71
NZ_CP042984.1\|WP_011609345.1\|625230_625911_-\|TIGR00153-family-protein	gnl\|CDD\|272932	TIGR00153, UPF0111_protein_MTH_1689, TIGR00153 family protein. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport. [Hypothetical proteins, Conserved].	1.86964e-71
NZ_CP042984.1\|WP_132995515.1\|647671_648448_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.16913e-146
NZ_CP042984.1\|WP_148417583.1\|640692_640830_-\|hypothetical-protein	gnl\|CDD\|379020	pfam13018, ESPR, Extended Signal Peptide of Type V secretion system. This conserved domain is called ESPR for Extended Signal Peptide Region. It is present at the N-terminus of the signal peptides of proteins belonging to the Type V secretion systems, including the autotransporters (T5aSS), TpsA exoproteins of the two-partner system (T5bSS) and trimeric autotransporters (TAAs). So far, the ESPR is present only in Gram-negative bacterial proteins originating from the classes Beta- and Gamma-proteobacteria. ESPR severely impairs inner membrane translocation, suggesting that it adopts a particular conformation or it interacts with a cytoplasmic or inner membrane co-factor, prior to exportation. Deletion of ESPR causes mis-folding of the TAAs passenger domain in the periplasm, substantially impairing its translocation across the outer membrane.	8.5359e-06
NZ_CP042984.1\|WP_075319838.1\|645551_646688_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.0709e-46

>NZ_CP042984.1|WP_148417623.1|631860_632979_-|hypothetical-protein
MAMNAMPEGEEKKQAEEKLKESKEKLEAAKKELETAKSELTKAKEGLTEANKGYEKNYGGYEKVAELVNPSXDSKAELTNVATIGDLQAVAKSGLKFKGNDDMEIHTALSGTFAIKGEEGANGNKFNSDRTAAGNIKVEMSQDGKGLEVKLSDQLKNMTSFETREVEGRKSTLNSNGLIVVNKGADNKVKSATYGAEAMVLXYKGKNNKATITDESLTFSDNAAQNQQNPKMPKAVLNKNGLTVTGTNGEIKIDGEKGIITVPDIKPTTSGSAVVNKKYVDGKDNELRTQLNTTDRNLRAGIAGALAAAGLPMSSVPGKSMFAASAGTFKGQNALALGYSRVSDNGKITLRLQGTRSSTGDVGGSVGVGYQW
>NZ_CP042984.1|WP_132995236.1|629061_631773_+|DNA-translocase-FtsK
MIKRIKQFFLPKRDLVEFLLILTALWGFYLIVAWFSYSPFDNSWAISSFQTETINKAGALGAWMIDLFFTFFGVVGNIIPFVLFIAPIYFLHTKRTQGLTWGRFFLRILGFVTLLVGLMILATLMLVKTEHHLSGGVLGAILIVKLYPLFSNQFPLIIIGSIASIIGFIFCSGASLFYLMMNCYDWLTMKDKESLLDTQSNGADSVEQELEEIIIQSPPIEQNIANEDTEKQGLELVNISSFINIQGLPDEQVEEQQNLAAPMLMKQNEVVDIAQTLGDLKQQELPIPSVSLSTEKNEALALETENIAEQTALSAVEEADNHNINELAKQFAEFEQQRLLKMEQQAREIGAEDALKVILAEEVTEDVPAVMEEVIEEKELSQSAVNYKTYGDSLIHPALQQKVTVQEKPTTPLPSLDLLERRTIQTYNITQEEILETSQRIMQQLRNFNVKAEVRDVLVGPVVTRYELELQPGVKASKVTSIDTDLARALMFRSIRIAEVIPGKPYIGIETPNIQRQIVPLRDVLDTDEFRQSNYLLPMALGKDISGKPVIVDLAKMPHLLVAGSTGSGKSVGVNTMILSLLFRVKPEEVKFIMIDPKVVELSVYNGIPHLLTEVVTDMKKAANALRWCVDEMERRYQLLSALRVRNIEGYNEKITEYEALNMPIPNPLWRPGDTMDTLPPPLEKLSYIVLIVDEFADLMMVAGKQVEELIARLAQKARAIGIHLILATQRPSVDVITGLIKANIPSRIAFTVASKIDSRTILDQGGAEALLGRGDMLYSAQGSSELLRVHGAFMSDDEVVRVADDWRARGKPSYIEGILDSVNDESNDNETDYDSNGDLDDLFDEVVEFVINTGITSASSVQRRFRVGFNRAARIMDQLEEQGIVSPLQNGKREVLARKGDY
>NZ_CP042984.1|WP_011609342.1|628583_629060_+|leucine-responsive-transcriptional-regulator-Lrp
MEKKIKSLDSIDIKILNELQRNGKISNIDLSKKVGLSPTPCLERVKRLERQGIIMGYRALLNPELLDSPLLVIVEITLVRGRPDVFEEFNVAVQQLDEIQECHLVSGDFDYLLKTRVADMAAYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNFLQLK
>NZ_CP042984.1|WP_132995234.1|627106_628483_+|DNA-repair-protein-RadA
MAKSPKTAYVCNDCGAEFARWQGQCSACKAWNTISEVRLVSTAKVKNDRFSGYAGEAKAKIQTLAEISLQETPRFTSGFRELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAQSMTALYITGEESLQQVAMRANRLGLPTDRLQLLSETSIEQICHLADQLKPQIIVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLLLEGESDSRYRTLRSHKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRGDEQTSGSSVMVVWEGTRPLLVEIQALVDHSMLANPRRVAVGLEHNRLALLLAVLHRHGGLQMSDQDIFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPFANKPKSAVENMQVFTVKKLADALAILDNF
>NZ_CP042984.1|WP_132995232.1|626053_627097_+|inorganic-triphosphatase
MTKEIELKLSVSNAFAQFLSQEMTSFHVLKQEKVFLGNTYYDTADSYFARHKMGLRVRQYNNDFTLTLKTNGDVLGGLHSRPEYNVSQESAVPNLAKLTEIYDLPNWHEFVLQPIFRTDFERCLWLVECGYDVEIEVALDQGWIIAGEKSVPICEVEFELKQGKTEDLLNFVANLSLESDVRLSSASKAQRGYQLAFNIQPQIQDWIAKWREFIVLAAHEKIAYLVKFEQQLIEESVMLGKDYFAQEFLRTVERIGAFFNLYHFYSENVTLLENQVNLQLTQGITHLDQNLLADLVERNAYLLLQIKDIIRCHSENKNNALAIEKLFALFHSGQYVKRMLDLTFLTL
>NZ_CP042984.1|WP_011609345.1|625230_625911_-|TIGR00153-family-protein
MAMNNILGLFAHSPLTPLQRHSDKVTECCKLLIPFFESTFAGDWHNATKIRAELSELERQADTLKREIRLKLPLGLFMPIDRTDLLELTTQQDKLANCAKDIAGRMLGRQFTFPQEMQEDFMKYVYRSLDATVQANRVIEEMDALLETGFKGHELTLVNNLIHELDAIEDDTDHMQIKLRMMLRNIENQYSPIDVMFLYETLAWIGVLADQAQRVGSRIELMLARS
>NZ_CP042984.1|WP_011609346.1|623941_625204_-|inorganic-phosphate-transporter
MEILQEYGTILVIITAVFGFLMAFGVGANDVANAMGTSVGSGTITAKQAIFIAMFFECAGAYLAGGEVTETIKSGVIDPMQFTDTPEILVFGMMAALFSSGIWLLIASKMGWPVSTTHAIIGAIVGFACITVGAHAVDWGTVRNIVGSWFITPILAGIIAYAIFFSTQKLIFDTPKPLANAQKYGPFYMGLTVLILAIVTMTKGLKHIGLHLTTIETLIISGIISIIAGILGSFYFRSQRFIQNVTKGTFGAVEKVFSILMLLTACAMAFAHGSNDVANAVGPLSAVVSIIEHGGEIAGKTTLAWWILPLGSVGIGVGLIVMGYKVMSTIGTGITDLTPSRGFAAQFATAVTVVLASGTGLPISTTQTLVGAILGIGFARGIAAINLTVIRNIVASWIVTLPAGTFFAIVIYYIIYAIFH
>NZ_CP042984.1|WP_132995230.1|623225_623837_-|SH3-domain-containing-protein
MKKITSLLVSALLLVFSLSNAYAETKYVKENLTTFMRRGAGDQFKISGTIQAGESVTVLDKKDKYSLIRDKRNREAWILTSELTSTPSSREENPKLKAQIQELTLKLNNIDNDWKQRTSEMQRRTKQAEEQSSKLLEQNSLLNRELEITKNKNRDLEAMLDVGKREIAIQWFIYGGSVLGAGLLLGLILPLLIPKRRRQNRWS
>NZ_CP042984.1|WP_132995228.1|621967_623221_-|multifunctional-CCA-addition/repair-protein
MMQIYLVGGAVRDQLLGLPIKDRDWLVVGSTAEELLSQGYQQVGKDFPVFLNPKTREEYALARTERKSGTGYTGFICDFNPNITLEQDLMRRDLTINAIAQDMAGQYHDPYNGIADLKKGILRHISPAFAEDPLRVLRVARFAARYHQLGFKIAPDTLALMKKIANNGELRQLSPERVWQETEKALHEQDPQVYFAILQKIDALKVLCPEISVFNSDSIQYRSDMTDFVHAMPILKQTTLLTEKTDYHKSAVRFAALCHDVGKALSTANIPPYSHDNKITRIAYLRNVCQRFKVPNYVQELAELTCQYHSHIHHALALHTKTILTLFNKLDVWRKPKRFEELMLVCLADSLTQTEMNYTDCPQYKFLLCLYQAALAVDVQQIISEGFQHKAIRAELDRRREIAIQIKKQQFIEQNLT
>NZ_CP042984.1|WP_011609349.1|619881_621789_-|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGERTTPSIIAYTNDNETLVGQPAKRQAVTNPKNTLFAIKRLIGRRFEDQEVQRDVAIMPFEITKADNGDAWVSVKGEKMAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGKGNQTIAVYDLGGGTFDLSIIEIDEVGGEKTFEVLATNGDTHLGGEDFDNRVINYLVDEFKKEQGVDLRNDPLAMQRLKEAGEKAKIELSSAQQTDVNLPYITADATGPKHLNIKLTRAKLEALVEDLVARSMEPVKVALSDAGLSVSEINDVILVGGQTRMPLVQQKVAEFFGKEPRRDVNPDEAVAIGAAVQGGVLAGDVKDVLLLDVTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKQASANKSLGQFNLEGINPAPRGMPQIEVTFDIDADGIIHVSAKDKGTGKEQKITIKASSGLSDEEIQQMVRDAEANAEADRKFEELVQARNQADHLVHSTRKQLAEVGEKLSAEDKAPIESAVNELETAAKGEDKTEIDAKVQALIQVSEKLLQASQQQAQADAGAQQSQSTKGGDDVVDAEFEEVKDK
>NZ_CP042984.1|WP_148417583.1|640692_640830_-|hypothetical-protein
MNKIFKTKYDITTGQCKAVSELASNRQIASSSKSKPKCGGFLGMX
>NZ_CP042984.1|WP_132995513.1|641853_643920_+|glycine--tRNA-ligase-subunit-beta
MTTQNFLAEIGTEELPPKALKKLATAFAENVEQELNQAGLAFEKVEWFAAPRRLAVKVLGLAEAQPSKQVEKRGPAVSAAFDAEGKPTKAAEGWARGCGITVEQAERLSTDKGEWLVHRAVIEGQPTKNLLVGIIDKALAGLPIPKTMRWGDKTEQFVRPVHTVTLLFGADLIEGEILGVASGRTVRGHRFLGEREFSLDHADQYPQLLKERGSVVADFNERKALILATSREKATALGGVADIEEELLEEVTSLVEYPNVLTAKFEERFLAVPAEALVYTMKGDQKYFPIYDKDGKLLPHFIFVSNINPDDPSKIIEGNEKVVRPRLTDAEFFFKTDLKQKLEDRLPCLETVLFQQQLGTLRDKTARIEALAGEIAAQIGADQTKAKRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEDVAVALNEQYMPRFAGDTLPNSLVACSVALADKIDTLTGIFGIGQSPKGSADPFALRRAALGCLRIIVEKNLPLDLADIVAKATALFGDKLTNKNVVDEVVEFMLGRFRAWYESEGIAVDVIQSVLARRPTKPADFDARVRAVSHFRTLDSAEALAAANKRVSNILAKADIAIGEIDLGVCVESAEKTLAEAVIALKGEVQPLIAQGDYTAVLDKLANLRQPIDAFFDGVMVNVEEQTLRQNRLAILSTLQNLFLQVADISVLQ
>NZ_CP042984.1|WP_011608637.1|644023_644407_-|autonomous-glycyl-radical-cofactor-GrcA
MIKGIQITQAANDNLLNSFWLLDSEKGEARCLAAKAEFVEDQIVAVSELGQIEYRELPVDVAPTIKVEGGQHLNVNVLRRETLEDAVNNPEKYPQLTIRVSGYAVRFNSLTPEQQRDVITRTFTQSL
>NZ_CP042984.1|WP_075293967.1|644746_645076_-|hypothetical-protein
MKLAKLVIPVLLGLGLTACNDDTAFIGTYQNAEKQLLYIDKTNTDKHFTVETKIKVKTYFGTETMDSRKYVVYKKGDQLLELGNDSVIGELGKDSFTLSINGITYKKKL
>NZ_CP042984.1|WP_075293968.1|645081_645315_-|hypothetical-protein
MTTTVTTVRLSGKRKQIVEYIALQAGAKCGQLLKKSDVIHFLIDRYGNAETIDALVEKYGASKSPLALRDSNENTEE
>NZ_CP042984.1|WP_075319838.1|645551_646688_+|transposase
MLIRKAFKFEIRPNGEQIRKIKQFCGCSRFVFNKALAWQNEQYELDNNHKFRYYKIANLLPQWKKELIWLKECHSQVLQQSLKDLESAFENFFQKHSSFPTFKKKGIKESFRFPQGCKIQPQNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFVSIQTEFEQKIPTHKGGEIGIDMGITRFATLSNGEFFEPLNAFKTYKGKLAKLQKQLKNKVKFSKNWQKLKAKISRLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSAKGTVEAHGKNVKQKSGLNRSILDQSWFEFRRQLDYKTQWLGGFLVAVPARDTSRACPCCGHTAKENRQTQANFECVECGYTENADVVGAMNVLTRGQAIVKA
>NZ_CP042984.1|WP_011608638.1|646984_647656_+|uracil-DNA-glycosylase
MNTWKEAIGQEKQQPYFQHILQQVQQARQSGRTIYPPQEEVFSAFRLTEFDQVRVVILGQDPYHGVNQAHGLAFSVKPGIAPPPSLVNIYKELSTDIMGFQTPSHGYLVGWAKQGVLLLNTVLTVEQGLAHSHANFGWETFTDRVIHVLNEQRDHLVFLLWGSHAQKKGQFIDRTKHCVLTSPHPSPLSAHRGFFGCRHFSKTNQYLRHHNLTEINWQLPMTI
>NZ_CP042984.1|WP_132995515.1|647671_648448_+|peroxide-stress-protein-YaaA
MLAIISPAKTLDWESAVPNFAFSQPHLTAYSEKLIKICRQLSPAQISSLMSISDKLAGLNAARFEQWQIEHNEQNSRAAIYAFKGDVYTGLEVETLSRDDIQFAQQHLRVLSGLYGVLRPLDLMQPYRLEMGTKLANEKGKDLYAFWGNIITDALQQAIEQQGDKILVNLASDEYYKSIKENQLEVKIIKPVFLDNKGGKYKVISFYAKKARGLMCRYIIQHRVTDIEQLKEFDLGGYQFNPSSSTQTEFVFKRDVIK
>NZ_CP042984.1|WP_011608641.1|649014_649911_+|cation-diffusion-facilitator-family-transporter
MERIYSQQVKKAANLAIFTALLLILVKSFAWWQTSSVSMLASITDSMLDLLVSLMNMLILRFALMPADHNHSFGHGKAEALAGLGQSAFISGSAVFILLQGIHRLNTPQPLMNFQIGVFVTLFSILATALLVIYQSKVIKQTGSPAIKADKLHYQTDLLMNFTILISLSLSQLGYQQADAIFALLIAFYILINAGKILFDNLQLLLDVALPDEEIKSIEQIILADKRILGFHDLKTRRSGAVRFIQFHLELDDHMSFLQAHQITEDIENQLRQRFSYTDIAIHQEPTSVVQVELKSLN
>NZ_CP042984.1|WP_011608642.1|650023_650989_+|6-phosphofructokinase
MIKKIAVLTSGGDAPGMNAAIRGVVRSALSEGLEVYGIYEGYYGLYHNKIQQLTRYSVSDIINRGGTFLGSARFPEFKDPAVREKCVEILRSHGIDALVVIGGDGSYMGAKLLTEEHDFPCVGIPGTIDNDVAGTDYTIGYQTALETAVEAIDRLRDTSSSHKRISIVEIMGRHCSDLTISAAIAGGCEYIVASEIEFNREELIKQIERAIIKGKRHAIIAITELLCDVNELAREIEARVKHETRATILGHIQRGGTPCAFDRILGSRMGVYAVDLLLQGKGGYCVGIQNEQLVHHDIIDAINNMRREFKADWLAMSKRLD

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Crispr_ID: NZ_CP042984_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042984_3

1448476-1448564

Orphan

Consensus_repeat	Method
AAATCTGCCGAAGGCAAATGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042984_3

>merge|NZ_CP042984|3|1448476-1448564|CRISPRCasFinder
AAATCTGCCGAAGGCAAATGCGGTGAAGGAAAATGCGGTGCAACCGCTCCTAAGAAAAATATGCCGAAATCTGCCGAAGGCAAATGTGG

>NZ_CP042984|3|3|1448476-1448564|CRISPRCasFinder
AAATCTGCCGAAGGCAAATGCGG	TGAAGGAAAATGCGGTGCAACCGCTCCTAAGAAAAATATGCCG
AAATCTGCCGAAGGCAAATGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042984.1\|WP_132995405.1\|1450311_1451052_+\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NZ_CP042984.1\|WP_012340216.1\|1469760_1471200_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP042984.1\|WP_012340234.1\|1443881_1444232_-\|purine-nucleoside-phosphoramidase	unknown	unknown	gnl\|CDD\|182648
NZ_CP042984.1\|WP_011609306.1\|1455797_1456139_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP042984.1\|WP_012340237.1\|1441925_1442444_-\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|226733
NZ_CP042984.1\|WP_132995403.1\|1451180_1452134_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP042984.1\|WP_012340236.1\|1442472_1443519_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NZ_CP042984.1\|WP_132995415.1\|1437270_1440102_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP042984.1\|WP_133098730.1\|1440830_1441715_-\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NZ_CP042984.1\|WP_075293712.1\|1444475_1445327_+\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|274951
NZ_CP042984.1\|WP_132995407.1\|1449542_1450247_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP042984.1\|WP_132995401.1\|1452199_1453963_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP042984.1\|WP_012340219.1\|1456430_1457303_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|225389
NZ_CP042984.1\|WP_012340218.1\|1457393_1457960_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP042984.1\|WP_132995399.1\|1453962_1455693_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP042984.1\|WP_147590511.1\|1448637_1449558_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NZ_CP042984.1\|WP_012340235.1\|1443525_1443882_-\|YcfL-family-protein	unknown	unknown	gnl\|CDD\|176923
NZ_CP042984.1\|WP_012340231.1\|1447880_1448339_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP042984.1\|WP_011609291.1\|1445421_1447746_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NZ_CP042984.1\|WP_132995413.1\|1440280_1440745_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097

Protein	Function_ID	Function_description	E-value
NZ_CP042984.1\|WP_132995405.1\|1450311_1451052_+\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NZ_CP042984.1\|WP_012340216.1\|1469760_1471200_+\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP042984.1\|WP_012340234.1\|1443881_1444232_-\|purine-nucleoside-phosphoramidase	gnl\|CDD\|182648	PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.	8.22302e-70
NZ_CP042984.1\|WP_011609306.1\|1455797_1456139_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	4.95269e-20
NZ_CP042984.1\|WP_012340237.1\|1441925_1442444_-\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|226733	COG4283, COG4283, Uncharacterized conserved protein [Function unknown].	1.12086e-75
NZ_CP042984.1\|WP_132995403.1\|1451180_1452134_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	2.24839e-180
NZ_CP042984.1\|WP_012340236.1\|1442472_1443519_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NZ_CP042984.1\|WP_132995415.1\|1437270_1440102_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP042984.1\|WP_133098730.1\|1440830_1441715_-\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NZ_CP042984.1\|WP_075293712.1\|1444475_1445327_+\|formate-transporter-FocA	gnl\|CDD\|274951	TIGR04060, formate_focA, formate transporter FocA. FocA (formate channel A) forms a pentameric formate-selective channel through the plasma membrane. The focA gene is largely restricted to Proteobacteria and occurs adjacent to genes for pyruvate formate lyase (PFL) and the PFL activase, a radical SAM protein. FocA is homologous to a nitrite transport protein, NirC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	1.42056e-157
NZ_CP042984.1\|WP_132995407.1\|1449542_1450247_+\|DUF2063-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	5.59523e-73
NZ_CP042984.1\|WP_132995401.1\|1452199_1453963_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042984.1\|WP_012340219.1\|1456430_1457303_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|225389	COG2833, COG2833, Uncharacterized protein conserved in bacteria [Function unknown].	4.6178e-143
NZ_CP042984.1\|WP_012340218.1\|1457393_1457960_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	9.74564e-85
NZ_CP042984.1\|WP_132995399.1\|1453962_1455693_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042984.1\|WP_147590511.1\|1448637_1449558_+\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	3.57778e-138
NZ_CP042984.1\|WP_012340235.1\|1443525_1443882_-\|YcfL-family-protein	gnl\|CDD\|176923	cd09030, DUF1425, Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.	1.07943e-18
NZ_CP042984.1\|WP_012340231.1\|1447880_1448339_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.936e-21
NZ_CP042984.1\|WP_011609291.1\|1445421_1447746_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP042984.1\|WP_132995413.1\|1440280_1440745_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	6.46156e-91

>NZ_CP042984.1|WP_012340231.1|1447880_1448339_+|DoxX-family-protein
MSHCHIFKQSTQGLSLLVLRFFVAYEFFEAGLEKWNGENWFYAVKDNFPFPFSILPLDLNWAIATGAELLFPILLVLGIATRFSALGLMILTAVAWATVHSGLGYNVCNNGYKLPLIYIITLLPLLLQGAGVVSLDFLLRKKYSAQKRLNLL
>NZ_CP042984.1|WP_011609291.1|1445421_1447746_+|formate-C-acetyltransferase
MAQLTETQQKAWEGFVGGDWQTEVNVRDFIQKNYTPYEGDEAFLAEATEATSILWADVMEKIKVENKTHEPYDIDTDIPSTITSHKAGYINKDLEKIVGLQTDAPLKRAIMPFGGINMVRGSCKVYRRELNPEVEKIFTEYRKTHNQGVFDVYTPDILRCRKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKFKQFTSLQEKLESGEDIQATIQLREEIAEQHRALGKMKEMAASYGYDISAPAKNAQEAVQWTYFAYLAAVKSQNGAAMSFGRVSTFLDIFIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMWATETLAGMGLDGRTLVTKTSFRILHTLYTMGPSPEPNLTILWSESLPDGFKRYAAKVSIDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGGIDEKSGDQVGPKTDPITTEYLDYEDVMTRLDSFMDWLAKQYVTALNIIHFMHDKYAYEAALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRGDIEVKNKAGDVIGISKNVAIDFEIEGEYPQFGNNDSRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDIDAQKRNLAGLMDGYFHHETTIEGGQHLNVNVLNREMLLDAVENPDKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTTSM
>NZ_CP042984.1|WP_075293712.1|1444475_1445327_+|formate-transporter-FocA
MKTENTTIIVSPSEMAQIGENVGVYKATKNQFYSFLSAISAGAFIALAFVFYTTTQTGSGNAPWGLTKLVGGLVFSLGIIMAVVCGSELFTSSTMSLIARVNKRITTTQMLKNWLVVYLGNFVGSLIIVLLIWFAGQTMAANGQWGLTILKTAQHKIHHTWLEAFCLGILCNIMVCIAVWMSYAGKTLTDKAFIMILPIGLFVASGFEHSVANMFMIPMGIITSHASSTDFWQAINLNPLQFADLDIYHFIFKNLIPVTLGNIIGGGVCIALMQWFTNKPHRH
>NZ_CP042984.1|WP_012340234.1|1443881_1444232_-|purine-nucleoside-phosphoramidase
MVEETIFSKIIRKEIPANIVYQDELVTAFRDISPQAPTHILIIPNKIIPTVNDVTSEDEVTLGRLFTVAAKLAEKEGIAQDGYRLIVNCNKHGGQEVYHLHMHLVGGEHLGKMLAK
>NZ_CP042984.1|WP_012340235.1|1443525_1443882_-|YcfL-family-protein
MKNLLIAFILSLGLIACGSLEKVNLVHSQQPIINISTELASDIDVQVSHSSASLTNVSQKQVTLVYYFFWYDKNGVTQGDVTNMKNATMLILSPGQTRQLVLQKPTTESVNYRLYLSL
>NZ_CP042984.1|WP_012340236.1|1442472_1443519_-|beta-N-acetylhexosaminidase
MSILLIDLSGQELRQEEIELLEHPLVAGLILFSRNFYDIEQIRHLIRSVRQKVKKPLLITVDQEGGRVQRFRQGLTQLPAMQSFACLLSDPQEQQEMAWRAGWQMAAEMTALDIDLSFAPVLDLGHQCKAIGDRSFHYEEKKLIELAEKFIQGMRQIGMSATGKHFPGHGHVLADSHLETPYDDRAKELIFAQDIRPFQSLIKQGLLDAVMPAHVIYTQCDNQPASGSSYWLKEVLRQQLGFQGAIFSDDLGMKGAGFMGDFVARCTQSLQAGCDLLLLCNEPEAVVQVLDRFKPQESQNKRIIRQTRLNKLFKKQRIDWQTLRTQRDWLENHKKLTALQQDWLAYKG
>NZ_CP042984.1|WP_012340237.1|1441925_1442444_-|ClbS/DfsB-family-four-helix-bundle-protein
MRVYKNKEELKTEINKAFKKYILEFDNIPETLKDKRVDKVDRTPAENLAYQVGWTSLVLKWEKDERKGLQVKTPSDEFKWNQLGQLYQWFTDTYAHLSLQELKAKLNENINAICTMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKVRKWKKTAL
>NZ_CP042984.1|WP_133098730.1|1440830_1441715_-|methylenetetrahydrofolate-reductase
MSYTKELDTLNHHMVDINGKINVSFKFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTYGANSGERDRTHTVVKRIKQETGLEAAPHLTGIDATPEELKAIAKDYWDGGIRRIVALRGDEPKGYIKKPFYASDLVELLRSVADFDISVAAYPEVHPEAKSAQADLINLKRKIDAGANHVITQFFFDVDSYLRFRDRCASIGIDAEIVPGILPVTNFKQLQKMAAITNVKIPSWMAKMYEGLDDDQTTRNLVAASIAMDMVKVLSCEGVKDFHFYTLNRSELSYAICHTLGVRPSL
>NZ_CP042984.1|WP_132995413.1|1440280_1440745_+|single-stranded-DNA-binding-protein
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEGRLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSRPKPSIASPSPVDAPLDDDIPF
>NZ_CP042984.1|WP_132995415.1|1437270_1440102_-|excinuclease-ABC-subunit-UvrA
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKMMLLAPVVKNRKGEHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENSQVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQMLMSLAKHYDFDIELPFEKLPKKIQQIILNGSGNEEIEFQYMNDRGDVVLRHHSFEGILNNMARRYKETESMSVREELSKNISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDIGPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTGVSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPEARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFFDAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRDKGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK
>NZ_CP042984.1|WP_147590511.1|1448637_1449558_+|DUF692-family-protein
MRQGAGLGYRRDLAEGFLQLRNNDRIQFMEIAPENWLKMGGFARYQFDKVAEKIPMLIHGLSLSLGGQAPLDKELLSGIKAMIKQYNTPFFSDHLSFCECDGHLYDLLPMPFTDEAVKHTAVRIREVQDFLEIQISVENTSYYLHSETSTMNEVEFLNAIAQEANCGIHLDVNNIYVNAVNHNLLDPHIFIDNVDLKRVNYIHIAGHDEEHSATNXXIQTSEAFNTIKGDFRHLPQLLVDTHGENVKGTVWDLLEYTYARLPHMPPTLLERDFNFPPFEKLCKEVDIIHQLQQKYVKKRGLSWLKI
>NZ_CP042984.1|WP_132995407.1|1449542_1450247_+|DUF2063-domain-containing-protein
MVKNLAQTQQEFVQAIREKDPSNHDPRRLNIYVRLLRNNTFGFIEKCFTETPAHLNRQDWDNAKEEFIKNGKAHSPYFQDIAGEFLQFCQHKNIFDENILSLMQFEFDQLQAEVSMFQLPTKFDITEQTPMKCSEVCFIKEYPVDFLSTQFNQILNQPSKTIVWRNAQFEVYYQKLTDLDHFLLMLLQEKAYSLQELKESLKTLAIDDEILKFLQQIWYKWIELDVIIPEQSKE
>NZ_CP042984.1|WP_132995405.1|1450311_1451052_+|pyruvate-formate-lyase-1-activating-protein
MSVLARYHSYESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWDLHDGKEISVEDLMKEVVTYRHFMNATGGGVTASGGEAILQAEFVRDWFKACKAEGISTCLDTNGFVRHYDHVIDELLDVTDLVLLDLKQLNDKVHQNLIGVPNKRTLEFAKYLQKRNQKTWIRYVVVPGYTDADEDIHLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSIIENYGHTVKY
>NZ_CP042984.1|WP_132995403.1|1451180_1452134_+|thioredoxin-disulfide-reductase
MSDFKHSQLLILGSGPAGYTAAIYAARANLKPVLVTGLQQGGQLTTTTEIENWPGDFGDTTGPELMQRMLQHAEKFDTEIVFDHINNVDLSERPFKLFGDAGAYSCDALIIATGASARYLGLPSEETYKGRGVSACATCDGFFYRNKPVAVVGGGNTAVEEALYLANIASEVHLIHRRETFRAEKILIDRLNKKVEEGKIILHTNRTLAEVLGDNMGVTGIRLKHTQTENVEDLKLEGVFIAIGHAPNTELFTNQLELNNGYIVVKSGLDGNATATSVQGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDTQK
>NZ_CP042984.1|WP_132995401.1|1452199_1453963_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKSRQKYVFKWLRKQQKPIKKLLSLNIILATISSVVLVAQTYILSYLLHQLIILNTDRSELIPHFLALILGFMLRGLILWAREKVGFKCGQQLRHHIRQQIFAKIHQAGPAMINQKSAGSWATLMLEQVENLHNFYARFLPQQALSAITPIIILIAVFPLNWAAGLILALTAPLIPIFMILAGLAAADSSQKNMSALAKLSGQFLDRLRGLETLRLFNKTKEQTEYIEESTEDFRETTMTVLKMAFLSSAVLEFFTSISIALMAVYFGFSYLGQINFGSYDTELTLFIGFFCLILAPEFYQPLRDLGAYYHDRAAGIGAADEIVKFLEQEVTSQQYEQTHSIEPKSAVEIIAKNLIALSPQGHPLTAPLNFCLTAQSNTALVGQSGAGKTTLINVLLGFLNYQGSLKINGIELHDLSLNEWRKNIAWVGQNPLLLQGTIRENLLFGDIQATDEQITQALEQAQASSFCAKLGLDFLIREGGIGLSVGQAQRLVIARSLLRQSNLLLLDEPTASLDAKSENAVLQVLQKISRNQTTLMITHRIEDLKQCDQILVMQQGQIVQQGRFEQLKEQGFFAELLAQQKQEIQ
>NZ_CP042984.1|WP_132995399.1|1453962_1455693_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPFLRLFYHAKFTLILGGILMIAGLASSIGLLTLSGWFLAATALAGIGTLFNFFYPSASVRGLAIGRTVTRYFEKIVTHDATFRVLAKLRVQVFSKLIPLSPAVLNRYRNSDLLNRLVADVDTLDTLYLRLIAPFISAMIVIAFITLGLSLFNVSIGVFIGISLLLLLLIIPIIFYRLGRKFGAKLTQSRSVYRTYFIEFIQSQAELLLFNAAFGSKEKLKAIELEWQSYQQQETNLVGLSTALVVFINGLLVVITLWFAAKAQFSIADYHNAFIALFAFAALASFELLMPISAAFLHIGQVISSAERINELLAQRPLVQFNGTNILQNNEYPLIQLKNVSFSYPDRNDQALQQINLTVEAGKKVAVLGKTGSGKSSLLQLLVRNYDCNQGEILLSNAPIQVYTEETLRQNICLLTQRVHIFSDTLRNNLQIAGSQQISDEKMCHILQKVGLEKLVQQDQGLDLWLGDGGRPLSGGEQRRLGLARVLLNNAPIILLDEPTEGLDRDTERHVLTLLFEHCQNKTFIMVTHRLTALEQFDLLCIMDNSHLVEQGHYHQLIQQEKGFFKQLIERI
>NZ_CP042984.1|WP_011609306.1|1455797_1456139_+|carboxymuconolactone-decarboxylase-family-protein
MTTFTDWKEHTAHVKKSFGELGKSHPKMLQAYINLDQAAAAEALDEKTRELIAIAVAITTRCESCISVHAEKAAKAGATESEIAGALATAIALNAGAAYTYALRALEAVKEQS
>NZ_CP042984.1|WP_012340219.1|1456430_1457303_+|ferritin-like-domain-containing-protein
MTALSTQDFWHKITTALAETNPYEKCRLVNQLYDEILPTINLDQTDDFPLVTPEQEIVGIPHKPFLVAPQNVPKRSFATNEGYAATLHAIAHIEFNAINLGLDAAWRFGRHAQEELEQGMPFIQDWLKVAREESTHFTLVNEHLNTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVPRVLEARGLDANPILQEKIAQRKDVEAVAILDIILRDEIGHVSIGNHWYHALSAKRQLDAMKCFSELLRKYRIVIFKGVINTDARIQAGFTQYELDWIYEIEQTLKSHIKNN
>NZ_CP042984.1|WP_012340218.1|1457393_1457960_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MKFNIPTILTLFRVGLIPFFIVTFYLPFHWAPFLTTIIFFIASITDWLDGYLARRWNQSTPFGAFLDPVADKVMVIAALTLVVEYQHVFWVTIPAIIMIFREIVISALREWMAEIGSRGIVAVSWLGKIKTASQMLALGGLLWHYNTLMEITAIVFLYIAAMLTVWSMFQYLAAAKKYLLADNKQKSE
>NZ_CP042984.1|WP_012340216.1|1469760_1471200_+|pyruvate-kinase
MSRRLRRTKIVCTLGPSTDRGNNLEKIIVAGANVVRMNFSHGTPEDHLARAEKVREIAKKLGKTVAILGDLQGPKIRVSTFKEGKIFLNIGDNFTLDADLPKGEGNQEAVGLDYKTLPQDVVPGDILLLDDGRVQLKVLSTDNTKVFTEVIVGGPLSNNKGINKLGGGLSANALTEKDKEDIILAARIGVDYLAVSFPRSSADLNYARELAQQAGLKAKIVAKVERAETVIDDEAMDDIILASDVIMVARGDLGVEIGDPELVGIQKKLIRRSRQLNRVVITATQMMESMISNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVSAMAKVCLGAEKMPSVNISRHRLDKEFDTIEETIAMSTMFAANHMKGVAAIIAMTSSGHTAKLMSRISSGLPIFALSRNESTLNLCALYRGVIPIHFDQDSRTLEGLKAAIQSLKDKGYLVSGDLVLLTQGDHLTSNGTTTCRALVVE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

365173 : 419204

Mannheimia_phage(34.48%)

capsid,protease,terminase,transposase,integrase

attL 369322:369338|attR 399152:399168

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075293630.1\|365173_366418_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	6.3e-127	57.0
WP_012341086.1\|366433_367015_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.2e-59	62.9
WP_011609585.1\|367100_368399_-	trigger factor	NA	NA	NA	NA
WP_101812545.1\|368781_370173_+	type II/IV secretion system protein	NA	NA	NA	NA
369322:369338	attL	NA	NA	NA	NA
WP_132994681.1\|370206_371466_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_132994680.1\|371535_372333_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_132994679.1\|372478_373855_+	signal recognition particle protein	NA	NA	NA	NA
WP_075293625.1\|373897_375637_-	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	5.1e-34	27.9
WP_075293624.1\|376093_377335_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	8.8e-89	41.5
WP_011609578.1\|377296_377482_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	1.7e-09	43.6
WP_075293623.1\|377494_378289_-	hypothetical protein	NA	NA	NA	NA
WP_075293622.1\|378320_379508_-	DNA cytosine methyltransferase	A0A2I7R2G4	Vibrio_phage	1.6e-95	46.5
WP_075293621.1\|379536_380265_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	9.0e-17	60.2
WP_132994678.1\|380270_381311_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	1.1e-12	74.0
WP_075293619.1\|381360_382029_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	6.4e-94	74.0
WP_011609572.1\|382967_383267_-	hypothetical protein	NA	NA	NA	NA
WP_075293616.1\|383316_383601_-	hypothetical protein	NA	NA	NA	NA
WP_075293616.1\|385157_385442_-	hypothetical protein	NA	NA	NA	NA
WP_148417573.1\|385528_386236_-	KilA-N domain-containing protein	K7PH30	Enterobacteria_phage	2.9e-20	46.6
WP_075293615.1\|387354_387552_-	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	4.3e-14	56.2
WP_087437308.1\|387554_387773_-	DUF1902 domain-containing protein	NA	NA	NA	NA
WP_075293614.1\|388652_388871_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	8.1e-22	79.2
WP_075293613.1\|388894_389917_-	hypothetical protein	NA	NA	NA	NA
WP_132994672.1\|390057_390546_-	hypothetical protein	NA	NA	NA	NA
WP_075293611.1\|390674_391091_-	hypothetical protein	NA	NA	NA	NA
WP_087437243.1\|391087_391267_-	hypothetical protein	NA	NA	NA	NA
WP_075290735.1\|391535_391724_+	hypothetical protein	NA	NA	NA	NA
WP_011609564.1\|392069_392336_-	hypothetical protein	NA	NA	NA	NA
WP_087437244.1\|392881_393721_-	DNA replication protein DnaD	F5A3D6	Riemerella_phage	3.1e-45	39.3
WP_087437245.1\|393777_394464_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	5.5e-40	43.4
WP_012341693.1\|394566_394794_+	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	2.8e-09	43.1
WP_075290719.1\|394949_395183_+	hypothetical protein	A0A0M3LR73	Mannheimia_phage	1.1e-24	76.7
WP_147590441.1\|396000_396693_+	replication protein P	A0A077KCC8	Edwardsiella_phage	3.8e-25	36.5
WP_147590442.1\|396702_397269_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	3.7e-66	64.0
WP_075293603.1\|397272_397899_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	3.1e-18	28.1
WP_075293602.1\|397911_398190_+	hypothetical protein	NA	NA	NA	NA
WP_147590282.1\|398268_398856_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	4.7e-48	54.6
WP_132994671.1\|398845_399250_+	hypothetical protein	NA	NA	NA	NA
399152:399168	attR	NA	NA	NA	NA
WP_147590283.1\|399400_400240_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.3e-72	52.2
WP_075319826.1\|400508_400925_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	7.4e-48	63.5
WP_075319827.1\|400971_402108_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	2.6e-119	56.4
WP_012341704.1\|402394_402631_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	2.7e-23	70.5
WP_011609542.1\|402623_403160_+	lysozyme	Q19UR6	Mannheimia_phage	5.2e-46	50.3
WP_132994669.1\|403132_403462_+	DUF2570 family protein	NA	NA	NA	NA
WP_041604566.1\|403490_403634_+	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	9.9e-13	69.8
WP_147590443.1\|403681_404353_+\|terminase	terminase	NA	NA	NA	NA
WP_132994668.1\|404352_405900_+	TerL	A0A1B1IVN4	uncultured_Mediterranean_phage	4.9e-97	42.4
WP_132994667.1\|405901_408079_+	hypothetical protein	S4S2T1	Puniceispirillum_phage	5.2e-44	26.1
WP_132994664.1\|408143_408338_+	hypothetical protein	NA	NA	NA	NA
WP_147590444.1\|411458_416153_+	hypothetical protein	A0A2I7RNS1	Vibrio_phage	2.4e-22	22.8
WP_011609534.1\|416659_416962_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_011609533.1\|417059_417242_+	hypothetical protein	NA	NA	NA	NA
WP_011609532.1\|417319_418183_+	hypothetical protein	NA	NA	NA	NA
WP_132994663.1\|418208_419204_+\|capsid	N4-gp56 family major capsid protein	NA	NA	NA	NA

DBSCAN-SWA_2

463821 : 520754

Escherichia_phage(16.67%)

transposase,integrase,protease

attL 489229:489245|attR 507785:507801

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075319814.1\|463821_464238_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-48	64.2
WP_075319813.1\|464284_465421_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	5.2e-112	53.7
WP_147590450.1\|465676_466621_+	hypothetical protein	NA	NA	NA	NA
WP_011609888.1\|466626_467073_-	hypothetical protein	NA	NA	NA	NA
WP_011609887.1\|467290_467623_-	hypothetical protein	NA	NA	NA	NA
WP_011609885.1\|467993_468641_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_132994536.1\|468840_469146_-	hypothetical protein	NA	NA	NA	NA
WP_147590451.1\|469294_469624_-	heme utilization protein	NA	NA	NA	NA
WP_147590452.1\|469720_469945_-	hypothetical protein	NA	NA	NA	NA
WP_133098725.1\|470065_470533_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_011609880.1\|471292_473323_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	1.2e-47	31.2
WP_041604434.1\|473324_473612_-	hypothetical protein	NA	NA	NA	NA
WP_011609878.1\|473706_474429_+	hypothetical protein	NA	NA	NA	NA
WP_011609877.1\|474714_474966_+	hypothetical protein	NA	NA	NA	NA
WP_011609876.1\|474962_475481_-	hypothetical protein	NA	NA	NA	NA
WP_011609875.1\|475960_476440_-	hypothetical protein	NA	NA	NA	NA
WP_147590453.1\|477328_478498_+	hypothetical protein	NA	NA	NA	NA
WP_081376607.1\|478613_479048_+	hypothetical protein	NA	NA	NA	NA
WP_075293458.1\|479895_480735_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_075293414.1\|480718_481723_+	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	1.2e-19	27.6
WP_075293415.1\|482344_482767_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_075293416.1\|482819_483320_-	hypothetical protein	NA	NA	NA	NA
WP_075293417.1\|483322_483520_-	hypothetical protein	NA	NA	NA	NA
WP_075293459.1\|483693_484155_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075293418.1\|484517_484928_-	hypothetical protein	NA	NA	NA	NA
WP_075293419.1\|484929_486957_-\|integrase	integrase	NA	NA	NA	NA
WP_075293460.1\|486959_488282_-\|integrase	site-specific integrase	NA	NA	NA	NA
489229:489245	attL	NA	NA	NA	NA
WP_011609871.1\|490366_490561_+	hypothetical protein	NA	NA	NA	NA
WP_011609870.1\|490564_490774_-	hypothetical protein	NA	NA	NA	NA
WP_011609869.1\|490777_491575_-	hypothetical protein	NA	NA	NA	NA
WP_011609868.1\|491722_492235_-	DUF3158 family protein	NA	NA	NA	NA
WP_147590454.1\|492275_492491_-	DUF1845 family protein	NA	NA	NA	NA
WP_081376609.1\|492744_493932_+\|integrase	site-specific integrase	A0A1B5FPC6	Escherichia_phage	6.8e-46	32.1
WP_081376610.1\|493903_494743_+	ATP-binding protein	H7BWC4	unidentified_phage	1.6e-38	38.5
WP_041604971.1\|495268_495472_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_135026463.1\|495587_495869_-	hypothetical protein	NA	NA	NA	NA
WP_075293423.1\|495837_496059_-	hypothetical protein	NA	NA	NA	NA
WP_075293424.1\|496362_496545_-	ribbon-helix-helix protein, CopG family	Q19US2	Mannheimia_phage	2.2e-12	67.8
WP_012341117.1\|496841_497060_-	hypothetical protein	NA	NA	NA	NA
WP_012341122.1\|498014_498314_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_075293425.1\|498524_499043_-	hypothetical protein	NA	NA	NA	NA
WP_147590455.1\|499225_499840_-	TIGR03761 family integrating conjugative element protein	NA	NA	NA	NA
WP_011609866.1\|499949_501179_-	hypothetical protein	NA	NA	NA	NA
WP_011609865.1\|501341_501893_-	DUF2857 domain-containing protein	NA	NA	NA	NA
WP_011609864.1\|501903_503610_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_147590456.1\|503599_504952_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	1.2e-83	45.1
WP_132994788.1\|506099_507209_+	methionine biosynthesis PLP-dependent protein	A0A1V0SL56	Klosneuvirus	1.2e-17	25.0
WP_011609498.1\|507373_507697_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.3e-19	49.0
WP_012341146.1\|507814_508510_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
507785:507801	attR	NA	NA	NA	NA
WP_012341148.1\|508596_509838_-	uracil permease	NA	NA	NA	NA
WP_011609495.1\|509939_510566_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_075321856.1\|511725_513075_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_147590457.1\|513479_513887_+	hypothetical protein	NA	NA	NA	NA
WP_132994786.1\|514696_516487_-	beta-glucuronidase	B9U1V4	Vaccinia_virus	2.1e-136	44.2
WP_012341153.1\|516508_517537_-	sugar kinase	NA	NA	NA	NA
WP_132994785.1\|518037_519336_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	4.5e-67	34.9
WP_132994784.1\|519401_520754_-\|protease	metalloprotease PmbA	NA	NA	NA	NA

DBSCAN-SWA_3

741844 : 770784

Burkholderia_phage(18.18%)

transposase,integrase,terminase

attL 760556:760585|attR 771263:771292

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014325826.1\|741844_742609_+\|integrase	site-specific integrase	F1BUS9	Erwinia_phage	6.4e-05	28.6
WP_087437258.1\|743672_745166_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001255015.1\|745277_745583_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014325824.1\|745610_746825_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	3.2e-19	28.7
WP_001447541.1\|747101_747986_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_075268008.1\|748306_748531_-	hypothetical protein	NA	NA	NA	NA
WP_014325823.1\|748613_749906_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_025288851.1\|750068_750914_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001082319.1\|751082_751886_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|751885_752722_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000018321.1\|753057_753873_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
WP_021112546.1\|754789_755800_+	hypothetical protein	NA	NA	NA	NA
WP_012340803.1\|757148_758048_-\|integrase	site-specific integrase	Q56VN7	Pseudomonas_phage	2.6e-05	23.3
WP_012340802.1\|758197_758635_+	hypothetical protein	NA	NA	NA	NA
WP_012340801.1\|759366_759945_-	hypothetical protein	NA	NA	NA	NA
760556:760585	attL	NA	NA	NA	NA
WP_147590471.1\|760695_761943_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.1e-53	31.5
WP_075294469.1\|762235_762493_+	hypothetical protein	NA	NA	NA	NA
WP_075294470.1\|762502_763012_+	hypothetical protein	NA	NA	NA	NA
WP_012340798.1\|763179_763401_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_075294471.1\|763410_763656_+	hypothetical protein	NA	NA	NA	NA
WP_147590472.1\|763656_763896_+	hypothetical protein	NA	NA	NA	NA
WP_147590473.1\|763840_764437_+	ash family protein	NA	NA	NA	NA
WP_075294473.1\|764588_765071_+	hypothetical protein	NA	NA	NA	NA
WP_075294474.1\|765063_765282_+	hypothetical protein	NA	NA	NA	NA
WP_041604074.1\|765268_765637_+	hypothetical protein	NA	NA	NA	NA
WP_075294476.1\|766162_768073_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.1e-48	31.1
WP_041604501.1\|768616_768883_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	2.7e-11	43.5
WP_011608692.1\|768918_769314_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	5.6e-05	34.5
WP_147590474.1\|769452_769755_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	4.1e-08	33.8
WP_075294478.1\|769757_770345_+	SocA family protein	A0A139ZPG5	Marinitoga_camini_virus	5.0e-10	29.7
WP_075294479.1\|770337_770784_+\|terminase	terminase	NA	NA	NA	NA
771263:771292	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1652938 : 1660210

Planktothrix_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075320114.1\|1652938_1654891_+	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	G9BWD6	Planktothrix_phage	6.2e-12	29.1
WP_041604300.1\|1654894_1655701_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.3e-19	32.3
WP_132995053.1\|1655781_1657368_+	FAD-binding protein	M1I0Y3	Acanthocystis_turfacea_Chlorella_virus	7.5e-08	23.9
WP_075319813.1\|1657524_1658661_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	5.2e-112	53.7
WP_075319814.1\|1658707_1659124_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-48	64.2
WP_011609430.1\|1659238_1660210_-	elongation factor P--(R)-beta-lysine ligase	A0A2K9L0E9	Tupanvirus	2.1e-05	19.7

DBSCAN-SWA_5

1869915 : 1932611

Haemophilus_phage(38.46%)

tail,head,terminase,plate,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081376598.1\|1869915_1870089_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_075294192.1\|1870775_1871573_-	transcriptional regulator	A0A0M4UKA3	Ralstonia_phage	8.6e-13	27.4
WP_075294193.1\|1871695_1871959_+	DNA-binding protein	NA	NA	NA	NA
WP_075294194.1\|1873929_1874811_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	3.7e-134	85.0
WP_075294195.1\|1874818_1875007_+	hypothetical protein	F6MII8	Haemophilus_phage	1.3e-20	80.0
WP_075294196.1\|1875003_1875309_+	hypothetical protein	NA	NA	NA	NA
WP_147590523.1\|1876105_1876321_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_135026520.1\|1876305_1876548_+	hypothetical protein	NA	NA	NA	NA
WP_075294199.1\|1876685_1877144_+	regulatory protein GemA	NA	NA	NA	NA
WP_075294200.1\|1877237_1877426_-	ribbon-helix-helix protein, CopG family	Q19US2	Mannheimia_phage	2.8e-07	52.7
WP_075294201.1\|1878154_1878823_+	hypothetical protein	A0A0R6PJV6	Moraxella_phage	2.7e-20	45.3
WP_075294202.1\|1878833_1879040_+	hypothetical protein	NA	NA	NA	NA
WP_075294203.1\|1879164_1879590_+	mor transcription activator family protein	F6MIJ8	Haemophilus_phage	1.5e-48	66.4
WP_075294204.1\|1879679_1880222_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	2.5e-72	67.2
WP_147590524.1\|1880228_1880459_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	1.4e-11	52.7
WP_075294206.1\|1880455_1880713_+	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_075294208.1\|1880829_1881084_+	hypothetical protein	NA	NA	NA	NA
WP_075294209.1\|1881080_1881335_+	hypothetical protein	A0A0M3LP87	Mannheimia_phage	1.6e-08	45.0
WP_075294210.1\|1881337_1881847_+	DUF1804 family protein	F6MIK6	Haemophilus_phage	8.7e-67	72.2
WP_135026522.1\|1881951_1883565_+\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	2.5e-277	85.1
WP_075294211.1\|1883643_1885263_+	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	4.4e-266	84.1
WP_075294212.1\|1885249_1886521_+\|head	phage head morphogenesis protein	A0A0M3LSH7	Mannheimia_phage	2.3e-169	70.9
WP_081376597.1\|1886762_1887308_+	hypothetical protein	A0A0M3LPA7	Mannheimia_phage	1.1e-62	75.4
WP_075294213.1\|1887307_1888288_+\|head	head protein	B7SDP1	Haemophilus_phage	1.2e-133	73.8
WP_075294214.1\|1888366_1888789_+	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	6.5e-44	64.5
WP_075294215.1\|1888785_1889424_+	DUF1834 family protein	B7SDP5	Haemophilus_phage	5.0e-80	70.8
WP_075294216.1\|1889420_1889687_+	hypothetical protein	B7SDP6	Haemophilus_phage	6.0e-27	67.1
WP_075294217.1\|1889673_1889847_+	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	3.7e-14	72.7
WP_075294218.1\|1889846_1891268_+\|tail	phage tail protein	B7SDP8	Haemophilus_phage	1.5e-196	74.8
WP_075294219.1\|1891279_1891654_+\|tail	phage tail protein	F6MIK8	Haemophilus_phage	3.3e-55	85.5
WP_087437316.1\|1891722_1892010_+	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	3.5e-17	52.8
WP_075294221.1\|1892280_1894413_+	hypothetical protein	A0A0M3LPB6	Mannheimia_phage	9.8e-96	37.0
WP_087437296.1\|1894454_1895810_+	hypothetical protein	F6MIL2	Haemophilus_phage	1.4e-159	61.9
WP_147590525.1\|1895820_1896927_+\|tail	phage tail protein	F6MIL3	Haemophilus_phage	2.7e-158	71.8
WP_075294223.1\|1896923_1897583_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.3e-83	69.4
WP_075294224.1\|1897685_1898036_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	9.9e-46	78.4
WP_075294225.1\|1898048_1899110_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	1.1e-145	72.4
WP_075294226.1\|1899109_1899673_+	YmfQ family protein	A0A0M3LQE1	Mannheimia_phage	4.8e-34	41.9
WP_147590526.1\|1899675_1901238_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	2.0e-66	51.1
WP_012341722.1\|1901234_1901582_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.3e-18	50.9
WP_012340329.1\|1901565_1901817_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.2e-13	50.6
WP_147590527.1\|1901907_1902504_+	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	1.1e-57	60.9
WP_147590528.1\|1903553_1903709_-\|transposase	transposase	NA	NA	NA	NA
WP_132994802.1\|1903815_1904505_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_132994803.1\|1904699_1906421_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-67	30.5
WP_147590529.1\|1906413_1907106_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_132994805.1\|1907242_1908340_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.7e-06	44.1
WP_132994847.1\|1908415_1909927_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	2.2e-86	37.2
WP_132994817.1\|1910217_1911420_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.1e-22	23.7
WP_132994819.1\|1911859_1912429_+	transcriptional regulator	NA	NA	NA	NA
WP_133098770.1\|1912757_1913363_+	porin family protein	NA	NA	NA	NA
WP_075294460.1\|1913384_1913828_+	DUF2846 domain-containing protein	NA	NA	NA	NA
WP_148417628.1\|1913950_1914925_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.0e-51	38.8
WP_011609634.1\|1916113_1917403_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_012341351.1\|1917463_1917991_-	DUF1523 family protein	NA	NA	NA	NA
WP_132994821.1\|1918018_1918801_-	YchF/TatD family DNA exonuclease	NA	NA	NA	NA
WP_041604354.1\|1918809_1919799_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_132994823.1\|1919791_1920424_-	dTMP kinase	W8D0J5	Erwinia_phage	1.3e-19	34.4
WP_132994825.1\|1920433_1921474_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_011609640.1\|1921605_1922418_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_011609641.1\|1922564_1923263_+	competence protein	NA	NA	NA	NA
WP_011609642.1\|1923355_1923937_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA
WP_075294453.1\|1923974_1925291_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_132994827.1\|1925357_1927661_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_011609645.1\|1927840_1928317_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_011609646.1\|1928326_1928608_+	cell division protein FtsB	NA	NA	NA	NA
WP_075294451.1\|1928608_1929292_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_132994829.1\|1929297_1931103_+	potassium transporter	NA	NA	NA	NA
WP_012341339.1\|1931115_1931604_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_012341338.1\|1931603_1932611_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042984

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection