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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042987 Histophilus somni strain UOC-KLM-ATR-08 chromosome, complete genome 3 crisprs cas14j,DEDDh,DinG,cas3 0 0 151 0

Results visualization

1. NZ_CP042987
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042987_1 734261-734349 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042987_2 1644429-1644526 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042987_3 1683397-1683492 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 29827 30 Streptococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_2 41057 : 45352 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 48865 : 52224 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 60030 : 60411 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 74745 : 77815 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 80881 : 87697 7 Prochlorococcus_phage(33.33%) protease NA
DBSCAN-SWA_7 103965 : 104895 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 123362 : 129936 6 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_9 138550 : 143186 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 150232 : 151153 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_11 162322 : 174604 5 Chrysochromulina_ericina_virus(33.33%) NA NA
DBSCAN-SWA_12 178127 : 193275 14 uncultured_Caudovirales_phage(28.57%) protease NA
DBSCAN-SWA_13 204107 : 205418 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_14 208870 : 213857 4 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_15 217979 : 224039 5 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_16 228187 : 236414 8 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_17 245553 : 311746 75 Haemophilus_phage(39.53%) tail,tRNA,plate,transposase,head,terminase NA
DBSCAN-SWA_18 314924 : 319615 3 Vibrio_phage(66.67%) NA NA
DBSCAN-SWA_19 323819 : 327886 4 Indivirus(33.33%) NA NA
DBSCAN-SWA_20 346407 : 351021 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_21 362292 : 363405 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_22 388356 : 397891 8 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_23 405645 : 407649 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_24 424418 : 431167 5 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_25 434506 : 437308 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_26 443356 : 445213 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_27 450939 : 454715 4 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_28 465224 : 466688 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_29 471209 : 475525 6 Clostridium_phage(40.0%) NA NA
DBSCAN-SWA_30 481896 : 482160 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_31 488157 : 491676 3 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_32 500702 : 501999 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_33 506241 : 508206 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_34 511229 : 511712 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_35 522468 : 529739 6 Tupanvirus(16.67%) transposase NA
DBSCAN-SWA_36 541590 : 545217 2 Enterococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_37 548873 : 549641 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_38 557395 : 558904 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_39 567350 : 568358 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_40 575451 : 584984 8 Tupanvirus(20.0%) NA NA
DBSCAN-SWA_41 610502 : 620190 10 Enterobacteria_phage(14.29%) tRNA NA
DBSCAN-SWA_42 627803 : 629318 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 635403 : 636697 2 Bradyrhizobium_phage(50.0%) NA NA
DBSCAN-SWA_44 641907 : 650105 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_45 656904 : 662917 6 Synechococcus_phage(40.0%) NA NA
DBSCAN-SWA_46 667365 : 671824 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_47 675501 : 679237 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_48 683729 : 685709 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 693632 : 697621 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_50 703166 : 704591 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_51 727146 : 737424 9 Organic_Lake_phycodnavirus(40.0%) NA NA
DBSCAN-SWA_52 742106 : 745581 2 EBPR_podovirus(50.0%) NA NA
DBSCAN-SWA_53 756302 : 762566 5 Vibrio_phage(40.0%) tRNA NA
DBSCAN-SWA_54 781122 : 781770 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_55 816582 : 820664 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_56 833030 : 838106 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_57 844506 : 858637 10 Ostreococcus_tauri_virus(20.0%) tRNA,protease,holin NA
DBSCAN-SWA_58 863449 : 864295 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_59 876268 : 878200 2 Pseudomonas_phage(50.0%) tRNA,protease NA
DBSCAN-SWA_60 884708 : 886226 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_61 890634 : 892125 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_62 902558 : 903608 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_63 912836 : 913853 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_64 936563 : 940854 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_65 948151 : 955608 5 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_66 966183 : 968652 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_67 974559 : 979383 5 Orpheovirus(33.33%) NA NA
DBSCAN-SWA_68 983200 : 985696 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_69 992492 : 992834 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_70 996491 : 996965 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_71 1007483 : 1010573 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_72 1015713 : 1035156 19 Tupanvirus(12.5%) tRNA,protease NA
DBSCAN-SWA_73 1043879 : 1046774 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_74 1053795 : 1054215 1 Sphingomonas_phage(100.0%) NA NA
DBSCAN-SWA_75 1057231 : 1057774 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_76 1064287 : 1069465 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_77 1079673 : 1090937 5 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_78 1101911 : 1118167 15 Acidithiobacillus_phage(12.5%) NA NA
DBSCAN-SWA_79 1122480 : 1124505 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_80 1136661 : 1152256 16 Escherichia_phage(14.29%) tRNA NA
DBSCAN-SWA_81 1160298 : 1167455 8 Pseudomonas_phage(40.0%) lysis NA
DBSCAN-SWA_82 1173422 : 1173707 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_83 1182666 : 1183392 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_84 1190776 : 1194691 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_85 1198724 : 1199672 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_86 1204242 : 1205691 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_87 1214037 : 1214682 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_88 1240679 : 1242428 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_89 1245808 : 1247790 2 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_90 1252580 : 1258623 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_91 1262885 : 1263536 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1270099 : 1272296 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_93 1299033 : 1305292 5 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_94 1311360 : 1314426 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_95 1330975 : 1332938 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_96 1339302 : 1341948 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_97 1347883 : 1354226 7 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_98 1368462 : 1369764 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_99 1373847 : 1384193 8 Staphylococcus_phage(50.0%) integrase attL 1374904:1374928|attR 1380330:1380354
DBSCAN-SWA_100 1391201 : 1400275 5 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_101 1415920 : 1420120 5 Marinitoga_camini_virus(25.0%) NA NA
DBSCAN-SWA_102 1424333 : 1430907 5 Escherichia_phage(66.67%) integrase attL 1418862:1418876|attR 1426736:1426750
DBSCAN-SWA_103 1438264 : 1438834 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_104 1443822 : 1444479 1 Acaryochloris_phage(100.0%) NA NA
DBSCAN-SWA_105 1447553 : 1449734 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_106 1457204 : 1459616 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_107 1465682 : 1469316 6 Elephant_endotheliotropic_herpesvirus(33.33%) transposase NA
DBSCAN-SWA_108 1481439 : 1484148 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_109 1488005 : 1506770 16 Ostreococcus_lucimarinus_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_110 1520347 : 1521682 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_111 1546730 : 1550604 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_112 1558065 : 1567378 9 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_113 1574532 : 1581920 6 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_114 1587660 : 1589988 2 Phage_TP(50.0%) tRNA NA
DBSCAN-SWA_115 1593918 : 1598557 3 Powai_lake_megavirus(50.0%) NA NA
DBSCAN-SWA_116 1605559 : 1609658 4 Streptomyces_phage(33.33%) NA NA
DBSCAN-SWA_117 1616709 : 1620510 6 Mannheimia_phage(33.33%) integrase attL 1614024:1614040|attR 1620552:1620568
DBSCAN-SWA_118 1631526 : 1632531 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_119 1639938 : 1641969 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_120 1647862 : 1648999 1 Salmonella_phage(100.0%) transposase NA
DBSCAN-SWA_121 1659736 : 1666495 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_122 1675831 : 1676467 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_123 1680055 : 1683239 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_124 1687423 : 1688315 2 Mannheimia_phage(50.0%) NA NA
DBSCAN-SWA_125 1694082 : 1747783 54 Mannheimia_phage(42.86%) capsid,protease,integrase,transposase,terminase attL 1714113:1714130|attR 1743618:1743635
DBSCAN-SWA_126 1757362 : 1759051 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_127 1763064 : 1769899 7 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_128 1775864 : 1777701 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_129 1807294 : 1811876 5 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_130 1817460 : 1818243 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_131 1823707 : 1824715 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_132 1842333 : 1843071 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_133 1847682 : 1850949 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_134 1860909 : 1862427 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_135 1871785 : 1878740 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_136 1885700 : 1886450 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_137 1899363 : 1899624 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_138 1904812 : 1905766 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_139 1910054 : 1929422 14 Enterobacteria_phage(11.11%) tRNA NA
DBSCAN-SWA_140 1942665 : 1943925 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_141 1948086 : 1948317 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_142 1961076 : 1974720 16 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_143 1980332 : 1988318 10 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_144 2007857 : 2012664 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_145 2035266 : 2036775 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_146 2048920 : 2050461 2 Synechococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_147 2053913 : 2055674 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_148 2059296 : 2060787 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_149 2073000 : 2074044 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_150 2077993 : 2091124 13 Escherichia_phage(57.14%) tRNA NA
DBSCAN-SWA_151 2106729 : 2108604 1 Catovirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage