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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042992 Histophilus somni strain UOC-KLM-ATR-013 chromosome, complete genome 3 crisprs cas14j,DEDDh,DinG,cas3 0 0 144 0

Results visualization

1. NZ_CP042992
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042992_1 353065-353148 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042992_2 734215-734303 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042992_3 1683401-1683496 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 29836 30 Streptococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_2 41066 : 45359 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 48871 : 52230 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 60038 : 60419 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 74756 : 77826 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 80899 : 87712 7 Prochlorococcus_phage(33.33%) protease NA
DBSCAN-SWA_7 103999 : 104929 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 123390 : 129976 6 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_9 138591 : 143228 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 150275 : 151196 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_11 162339 : 174622 5 Chrysochromulina_ericina_virus(33.33%) NA NA
DBSCAN-SWA_12 178141 : 193285 13 Erwinia_phage(16.67%) protease NA
DBSCAN-SWA_13 204092 : 205538 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_14 208855 : 213842 4 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_15 217964 : 224024 5 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_16 228172 : 236392 9 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_17 245531 : 311730 70 Haemophilus_phage(37.5%) head,tRNA,tail,plate NA
DBSCAN-SWA_18 314906 : 319597 3 Vibrio_phage(66.67%) NA NA
DBSCAN-SWA_19 324713 : 327871 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_20 346371 : 350985 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_21 388318 : 397855 8 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_22 405610 : 407614 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_23 424385 : 431134 5 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_24 434473 : 437275 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_25 443323 : 445180 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_26 450906 : 454682 4 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_27 465185 : 466649 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_28 471167 : 475483 6 Clostridium_phage(40.0%) NA NA
DBSCAN-SWA_29 481861 : 482125 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_30 488091 : 491610 3 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_31 500633 : 501931 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_32 506175 : 508140 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_33 511162 : 511645 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_34 522401 : 529674 6 Tupanvirus(16.67%) transposase NA
DBSCAN-SWA_35 541530 : 545156 2 Enterococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_36 548812 : 549580 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_37 557336 : 558845 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_38 567285 : 568293 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_39 575382 : 584916 8 Tupanvirus(20.0%) NA NA
DBSCAN-SWA_40 610430 : 620132 8 Enterobacteria_phage(16.67%) tRNA NA
DBSCAN-SWA_41 627751 : 629266 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_42 635349 : 636643 2 Bradyrhizobium_phage(50.0%) NA NA
DBSCAN-SWA_43 641852 : 650050 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_44 658959 : 662874 4 Synechococcus_phage(66.67%) NA NA
DBSCAN-SWA_45 667322 : 671780 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_46 675460 : 679196 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_47 683688 : 685668 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_48 693591 : 697580 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_49 703125 : 704550 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_50 727100 : 737375 9 Organic_Lake_phycodnavirus(40.0%) NA NA
DBSCAN-SWA_51 742051 : 745526 2 EBPR_podovirus(50.0%) NA NA
DBSCAN-SWA_52 756247 : 762511 5 Vibrio_phage(40.0%) tRNA NA
DBSCAN-SWA_53 781066 : 781714 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_54 816530 : 820612 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_55 832978 : 838054 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_56 844455 : 858586 10 Ostreococcus_tauri_virus(20.0%) holin,protease,tRNA NA
DBSCAN-SWA_57 863404 : 864250 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_58 876231 : 878163 2 Pseudomonas_phage(50.0%) tRNA,protease NA
DBSCAN-SWA_59 884670 : 886188 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_60 890599 : 892090 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_61 902526 : 903576 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_62 912805 : 913822 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_63 936556 : 940843 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_64 948141 : 955598 5 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_65 966173 : 968642 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_66 974550 : 979374 5 Orpheovirus(33.33%) NA NA
DBSCAN-SWA_67 983191 : 985687 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_68 992487 : 992829 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_69 996487 : 996961 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 1007489 : 1010576 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_71 1015716 : 1035160 19 Tupanvirus(12.5%) tRNA,protease NA
DBSCAN-SWA_72 1043883 : 1046778 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_73 1053798 : 1054218 1 Sphingomonas_phage(100.0%) NA NA
DBSCAN-SWA_74 1057232 : 1057775 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_75 1064288 : 1069466 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_76 1079674 : 1090937 4 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_77 1104531 : 1118195 13 Cellulophaga_phage(14.29%) NA NA
DBSCAN-SWA_78 1122509 : 1124534 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_79 1136690 : 1152288 16 Escherichia_phage(14.29%) tRNA NA
DBSCAN-SWA_80 1160330 : 1167487 8 Pseudomonas_phage(40.0%) lysis NA
DBSCAN-SWA_81 1173460 : 1173745 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_82 1182704 : 1183430 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_83 1190819 : 1194734 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_84 1198767 : 1199715 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_85 1204282 : 1205722 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_86 1214070 : 1214715 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_87 1238505 : 1242457 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_88 1245972 : 1247819 2 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_89 1252609 : 1258653 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_90 1262914 : 1263565 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_91 1270131 : 1272328 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_92 1299061 : 1305320 5 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_93 1311395 : 1314473 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_94 1331005 : 1332968 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_95 1339332 : 1341978 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_96 1347910 : 1354252 7 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_97 1368477 : 1369779 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_98 1373860 : 1384193 8 Staphylococcus_phage(50.0%) integrase attL 1374917:1374932|attR 1380340:1380355
DBSCAN-SWA_99 1391194 : 1404191 5 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_100 1415913 : 1420097 5 Burkholderia_phage(40.0%) NA NA
DBSCAN-SWA_101 1424316 : 1430891 5 Escherichia_phage(66.67%) integrase attL 1418839:1418853|attR 1426720:1426734
DBSCAN-SWA_102 1438248 : 1438818 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_103 1443812 : 1444469 1 Acaryochloris_phage(100.0%) NA NA
DBSCAN-SWA_104 1447543 : 1449724 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_105 1457192 : 1459604 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_106 1464878 : 1469309 6 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_107 1481449 : 1484161 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_108 1488018 : 1506782 16 Ostreococcus_lucimarinus_virus(12.5%) tRNA,transposase NA
DBSCAN-SWA_109 1510096 : 1511503 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_110 1520359 : 1521694 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_111 1546736 : 1550610 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_112 1558078 : 1567388 9 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_113 1574543 : 1581948 6 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_114 1587685 : 1649472 61 Escherichia_phage(14.29%) tRNA,protease,transposase,integrase attL 1599805:1599821|attR 1642728:1642744
DBSCAN-SWA_115 1664014 : 1666618 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_116 1675834 : 1676470 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_117 1680059 : 1683243 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_118 1687437 : 1690383 3 Mannheimia_phage(33.33%) NA NA
DBSCAN-SWA_119 1694097 : 1747809 55 Mannheimia_phage(41.38%) terminase,capsid,transposase,integrase,protease attL 1714134:1714150|attR 1743645:1743661
DBSCAN-SWA_120 1757390 : 1759079 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_121 1763088 : 1769923 7 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_122 1775888 : 1777725 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_123 1807312 : 1811899 5 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_124 1823730 : 1824738 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_125 1842355 : 1843093 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_126 1847704 : 1850971 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_127 1860927 : 1862448 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_128 1871801 : 1878753 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_129 1885701 : 1886451 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_130 1899371 : 1899632 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_131 1904820 : 1905774 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_132 1910061 : 1929430 14 Enterobacteria_phage(11.11%) tRNA NA
DBSCAN-SWA_133 1942672 : 1943932 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_134 1948093 : 1948324 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_135 1961078 : 1974722 16 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_136 1980335 : 1988322 10 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_137 2007858 : 2012669 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_138 2035270 : 2036779 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_139 2048925 : 2050465 2 Synechococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_140 2053910 : 2055676 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_141 2059298 : 2060789 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_142 2072999 : 2074034 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_143 2077977 : 2091108 13 Escherichia_phage(57.14%) NA NA
DBSCAN-SWA_144 2106694 : 2108569 1 Catovirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage