CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043003	Aggregatibacter actinomycetemcomitans strain HK_907 chromosome, complete genome	2 crisprs	cas3,PD-DExK,DEDDh,cas1,cas6f,cas5f,DinG,cas2,cas7	0	3	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043003_1

1292700-1292849

Orphan

Consensus_repeat	Method
CGACCCCCTGCGTGACAGGCAGGTATTCTAACCAGCTGAACTACCGCTCCG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP043003_1

>merge|NZ_CP043003|1|1292700-1292849|CRISPRCasFinder
CGACCCCCTGCGTGACAGGCAGGTATTCTAACCAGCTGAACTACCGCTCCGAATTAGAATAGATAAAAGAATTGGCGGAATGGACGGGACTCGAACCCGCGACCCCCTGCGTGACAGGCAGGTATTCTAACCAGCTGAACTACCACTCCG

>NZ_CP043003|1|1|1292700-1292849|CRISPRCasFinder
CGACCCCCTGCGTGACAGGCAGGTATTCTAACCAGCTGAACTACCGCTCCG	AATTAGAATAGATAAAAGAATTGGCGGAATGGACGGGACTCGAACCCG
CGACCCCCTGCGTGACAGGCAGGTATTCTAACCAGCTGAACTACCACTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043003.1\|WP_148325081.1\|1283807_1284107_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP043003.1\|WP_148325100.1\|1294325_1295657_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP043003.1\|WP_005540120.1\|1302210_1303161_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP043003.1\|WP_148325089.1\|1288598_1289987_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	unknown	unknown	gnl\|CDD\|237969
NZ_CP043003.1\|WP_148325083.1\|1284400_1285552_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP043003.1\|WP_148325092.1\|1291558_1291897_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP043003.1\|WP_148325104.1\|1296839_1297922_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NZ_CP043003.1\|WP_148325096.1\|1292941_1293703_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP043003.1\|WP_148325085.1\|1286026_1287163_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223157
NZ_CP043003.1\|WP_148325094.1\|1291958_1292249_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	unknown	unknown	gnl\|CDD\|224937
NZ_CP043003.1\|WP_148325102.1\|1295667_1296765_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064
NZ_CP043003.1\|WP_148325109.1\|1300436_1301582_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	unknown	unknown	gnl\|CDD\|183033
NZ_CP043003.1\|WP_148325098.1\|1293770_1294238_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP043003.1\|WP_148325091.1\|1290158_1291220_-\|YedE-related-selenium-metabolism-membrane-protein	unknown	unknown	gnl\|CDD\|274988
NZ_CP043003.1\|WP_148325087.1\|1287210_1288302_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP043003.1\|WP_005540112.1\|1298117_1298450_+\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NZ_CP043003.1\|WP_148325107.1\|1298604_1300194_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP043003.1\|WP_148325079.1\|1281926_1283777_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP043003.1\|WP_005545663.1\|1292238_1292493_-\|stability-protein-StbD	unknown	unknown	gnl\|CDD\|179484
NZ_CP043003.1\|WP_148325110.1\|1303205_1304117_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731

Protein	Function_ID	Function_description	E-value
NZ_CP043003.1\|WP_148325081.1\|1283807_1284107_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	1.81776e-43
NZ_CP043003.1\|WP_148325100.1\|1294325_1295657_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP043003.1\|WP_005540120.1\|1302210_1303161_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP043003.1\|WP_148325089.1\|1288598_1289987_-\|tRNA-5-hydroxyuridine-modification-protein-YegQ	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	0
NZ_CP043003.1\|WP_148325083.1\|1284400_1285552_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP043003.1\|WP_148325092.1\|1291558_1291897_+\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	6.77343e-34
NZ_CP043003.1\|WP_148325104.1\|1296839_1297922_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NZ_CP043003.1\|WP_148325096.1\|1292941_1293703_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	1.34549e-159
NZ_CP043003.1\|WP_148325085.1\|1286026_1287163_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	1.15578e-78
NZ_CP043003.1\|WP_148325094.1\|1291958_1292249_-\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.41018e-20
NZ_CP043003.1\|WP_148325102.1\|1295667_1296765_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	0
NZ_CP043003.1\|WP_148325109.1\|1300436_1301582_-\|FMN-dependent-L-lactate-dehydrogenase-LldD	gnl\|CDD\|183033	PRK11197, lldD, L-lactate dehydrogenase; Provisional.	0
NZ_CP043003.1\|WP_148325098.1\|1293770_1294238_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	1.92589e-101
NZ_CP043003.1\|WP_148325091.1\|1290158_1291220_-\|YedE-related-selenium-metabolism-membrane-protein	gnl\|CDD\|274988	TIGR04112, hypothetical_protein, putative selenium metabolism protein, YedE family. For 79 of the first 80 reference genomes in which a member of this protein family, YedE, is found, a selenium utilization system is found, spread over a broad taxonomic range (Firmicutes, spirochetes, delta-proteobacteria, Fusobacteria, Bacteriodes, etc. This family is less widespread than YedF, also involved in selenium metabolism.	8.83649e-167
NZ_CP043003.1\|WP_148325087.1\|1287210_1288302_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP043003.1\|WP_005540112.1\|1298117_1298450_+\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	4.97257e-48
NZ_CP043003.1\|WP_148325107.1\|1298604_1300194_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	1.35317e-142
NZ_CP043003.1\|WP_148325079.1\|1281926_1283777_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP043003.1\|WP_005545663.1\|1292238_1292493_-\|stability-protein-StbD	gnl\|CDD\|179484	PRK02854, PRK02854, primosomal protein DnaT.	7.39761e-07
NZ_CP043003.1\|WP_148325110.1\|1303205_1304117_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0

>NZ_CP043003.1|WP_005545663.1|1292238_1292493_-|stability-protein-StbD
MAIHQILTQQAASITDLKRDPMGIAYASQDGAVAILNRNQPAFYCVTPALFEYFQNLVEDAELGRIAEERLATLDPIEVSLDDL
>NZ_CP043003.1|WP_148325094.1|1291958_1292249_-|type-II-toxin-antitoxin-system-mRNA-interferase-toxin,-RelE/StbE-family
MTYKLTFDKRALKEWEKLGDTIRQQFKNKLAERLENPRVPGDKLRGYQNLYKIKLRAAGYRLVYEVNDNQIYILVLSVGKRNRLDAYKNAEFRQAR
>NZ_CP043003.1|WP_148325092.1|1291558_1291897_+|cupin-domain-containing-protein
MLKNIEKATVLKLNDLLVYQDGQVISKTFSQNPAVGLTMFCLPKGEEISAHKSRGDALVTMLEGKARITIDTTDYEVSAGESIVLPADIPHALYALENFKMFLTVVFPKEGR
>NZ_CP043003.1|WP_148325091.1|1290158_1291220_-|YedE-related-selenium-metabolism-membrane-protein
MKILTWPVVAGAALGIVAPLLTYNGNPGNMGFCAACFLRDTAGALGLHRATPLQYLRPELIGLVLGAFISALFSKEFRPRGGSAPLARISLGFFAMLGALIFLGCPWRAYLRLGGGDLTAIAGILGLFVGILGGIFFANRGFSLGKSTEQSQSSGLIGPIFSLILLVLLFTQFKFGENLPVYFSEKGPGAQHAAIWMSLGGGLLLGMLMQKSRFCTIGAFRNFVLFRDAHLLNGVIALIFFAAITNSLLGQFHVGFEQQPIAHNQYVWNFLSMALCGLCFSLGGGCPGKQLVNIGEGNNDAALFILGMLLGAATAHNFALAASPAGVTQFTPYILVLGFTVCLYIGLTNKSKI
>NZ_CP043003.1|WP_148325089.1|1288598_1289987_-|tRNA-5-hydroxyuridine-modification-protein-YegQ
MTTPFKPELLSPAGSLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHANLKIGIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLQPVIDMGPDALIMSDPGLIMLVRENFPNIDIHLSVQANAVNWATVKFWKQMGLTRVILSRELSLDEIAEIRQHVPDIELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKLDDVGNIVPKIDPRQQIEVKNVAPTLGEGTVTDKVFLYTETQNPDEQMTAFEDEHGTYFMNSKDLRAVQHVEKLTALGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESLAHRGYTEGFLRRHTHDEYQNYEYGYSISEHQQFVGEFTGKRNEQGMAEVAVKNKFLLGDEVEMMTPQGNIVFKINKMLNRKNVEVDAALGDGHFVFLDVPQDINLDYALLMRNLVNTNTRNPHEKKS
>NZ_CP043003.1|WP_148325087.1|1287210_1288302_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFYFDLPDELIARYPKTERTASRLLQLDGENGEIFHRTFADVLELINPGDLMIFNNTRVIPARMFGRKSSGGKIEVLVERVLSESRFLAHVRASKAPKEGAELILGEDKLGEGNGVNTTMIGRQGSLFEIEITEKQTALFDVLQKIGHMPLPPYIDRPDEEADQERYQTVYNKVPGAVAAPTAGLHFDDELLAKLNAKGVNFAFVTLHVGAGTFQPVRMENIEDHVMHAEYVEVPQEVCDAILATQKAGKRVIAVGTTSVRSIESAALAAEEKKSAVLIEPYFSDTSIFIYPGKSFRVVDCLITNFHLPESTLIMLVSAFAGFSHTMNAYKSAVENRYRFFSYGDAMFISKNPDVKGLE
>NZ_CP043003.1|WP_148325085.1|1286026_1287163_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQRRKLLKLTGAAVIGMTIAPGLIAKKKGRGSGSGILHLNFNENSLGMSEKAKQAIINSIGIGSRYPDEHRSELIRQLAEKYNLEDNFVSLGNGSSENIRGIVQSQVFKARQAKQTVQLVVPDPTFNYAELYAQAMNVPVTKVPLTKDFRFDLAKLQETAEQFSGVSIFYLCNPNNPTSTVTPAKELFRWIKKAPENYFFLLDEAYAEYVQDPAFESGVKLIKQGFKNVAVTRTFSKFYAMAGYRVGYMLANSDVVEEVDKFMSIDNINIAGAVAALASLKDKTFSQLSLQSNEASRKIVQNALRELGLKFAPSNGNFIFHEIKGDMQTYQERMKENGILVGREFLPIQSWSRLTLGTPEEMQRFVKILKEFRQNGWV
>NZ_CP043003.1|WP_148325083.1|1284400_1285552_-|tRNA-guanosine(34)-transglycosylase-Tgt
MRYELDKTSGNARRGRLVFERPQGTFTVETPAFMPVGTYGTVKGMTPEEVRATGAEILLGNTFHLWLRPGQEVMCKHGDLHDFMQWHRPILTDSGGFQVFSLGKLRKITEEGVKFQNPINGERIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAKQSMEMSLRWAQRSRARFDELSNKNALFGIIQGGTFEELRKVSLEGLINIGFDGYAVGGLAVGEPKEDMHRILEYICPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGIVKIRNAKYKDDTSPLDPQCDCYTCKHYTKAYLYHLDKCGEILGARLNTIHNLRYYQRLMAEIRQAIEADRFDDFVVEFYARIGKPVPPLQLAEADQ
>NZ_CP043003.1|WP_148325081.1|1283807_1284107_-|preprotein-translocase-subunit-YajC
METQQGSPMSMLFIFVIFGLIFYFMIYRPQAKRNKEHKKLMSELAKGTEVLTAGGIIGKIIKMVENSDNIVIALNDSTEVTINRNYIAAVLPKGTIKTL
>NZ_CP043003.1|WP_148325079.1|1281926_1283777_-|protein-translocase-subunit-SecD
MLNRYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGTRGQEANSAVLSDVQSVLKDNNLATKSIVLENGSILVRFNNTDTQLLAKDKITEKLGTNYSVALNLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKYQYSAIKSIDNFSTGVTLTNPEQLSDVQRYLRKQHPNLDVRATSENTLSLGLSDSVLNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAVLSGEHITNASSGVDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEEVINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYRKFGIIANIALIANIVLLVGLMSLLPGATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI
>NZ_CP043003.1|WP_148325096.1|1292941_1293703_-|DNA-polymerase-III-subunit-epsilon
MSIQINPNRQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVHGITDEMLADKPDFSQVANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLVTDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAITGGQTSLFDESEPEIIQHAGEQQVQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWERQSQEETLH
>NZ_CP043003.1|WP_148325098.1|1293770_1294238_+|ribonuclease-HI
MRKQIEIFTDGSCLGNPGAGGIGILLRYKQHEKKLSKGFFLTTNNRMELLAVVEALNSLKEPCDIHLYSDSQYMKNGITQWIFNWKKNHWKASSGKPVKNQDLWMALDQAIVRHKVDWRWVKGHAGHRENEICDQLAKQGAENPTLNDEGYQAEA
>NZ_CP043003.1|WP_148325100.1|1294325_1295657_-|3-phosphoshikimate-1-carboxyvinyltransferase
MQQAISITLNPIARVEGAINLPGSKSLSNRALLLAALAHGTTKVTNLLDSDDIRHMLNALKQLGVQYTLSEDKSVCEVLGLGGAFQWHDGLALFLGNAGTAMRPLAATLCLARAVNSAQNEVILTGEPRMKERPIQHLVDALLQAGADIRYLENEGYPPIAIRNTGLRGGLIKIDGSISSQFLTALLMAAPLAEGDSEIEIIGELVSKPYIDITLNMMKIFGVSVENQHYQRFIVKGKQSYQSPGAFLVEGDASSASYFLAAGAIKGKVKVTGIGKNSIQGDRLFADVLEKMGTRITWGEDFIQAEQAPLHGMDMDMNHIPDAAMTIATTALFAEGETVIRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLKPTEFKAAEIETYNDHRMAMCFALIALSDTPVTILDPNCTAKTFPTFFKEFLAIAQQPTGEAN
>NZ_CP043003.1|WP_148325102.1|1295667_1296765_-|histidinol-phosphate-transaminase
MQYIDRANEGVKTLLPYQAGKPIEELERELGIENIIKLASNENPFGLPPSAKKAIQAQLDNLNLYPDSNGFYFKQAVAEKFGLQPEQITLGNGSNDLIELIAHTFASEQDEVIYSQYGFIVYPLISQALNAKRVEIPAKNYGNDLKEFLNAITPKTKLIYIANPNNPTGSFANAAEIADFLAQVPPQVIVALDEAYVEFTEPSEQVDSFGLLAKYPNLIVCRTLSKAYGLAGLRIGYAASSVEIAGLLNRVRQPFNCNSLALAAATAAIKDDEFVAKVAENNRIGLQLLQNFFDEKGLRYVPSKGNFVMLDLQQPAAPIYQALLRKGVIVRPLAGYGLPNHLRISIGLPEENQRFLTALSEILGL
>NZ_CP043003.1|WP_148325104.1|1296839_1297922_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MANVFNFSAGPAMMPQAVLERAQQELLNWQGQGTSVMEVSHRGKLFMELIIQSQADFRKLYNVPENYQILFLQGGARGQFAAIPMNLLRENGKALYLNSGHWSATAAKEARSFGEIDEINILEPGDELKVKPLDFSDIAEQYDYVHYCSNETISGVEIFDVPNVGNGVLVGDFSSTILSRKVDVSKFGLIYAGAQKNLGPAGITIVIVRDDLIGKARKATPSIWNYEIQKNSDSMINTPPTFAWYLCALVFKHLSAIGGLPEIEKRNLAKAQLLYDYLNGSDFYRNNVAKANRSLMNVTFTTGDDELNAKFIAEATATGLQALKGHKVLGGMRASIYNAMPIEGVQALIAFMQKFAEENA
>NZ_CP043003.1|WP_005540112.1|1298117_1298450_+|DUF496-family-protein
MDNVNKSFQDVLEYVRMYRLKNKLLRDMDDNNRKIRDNQKRVLLLQNLDQYIRDDMSIRDVRTIIENMRDDYENRVDDYVIRNAELSKQRREISSKMKSQQKSHGESAKK
>NZ_CP043003.1|WP_148325107.1|1298604_1300194_-|L-lactate-permease
MALFLSVFPIILLIYLMVNRNALPSYIALPWIAAVVFIIQLVFFGTDITIVSANIASALVAVQTPVTVIFGAILFNRFSEISGATNTLRKWLGNINPNPVAQIMIIGWSFTFMIEGASGFGTPAAIAAPILVGLGFPALKVAMLTLVMNSVPVSFGAVGTPTWFGFGPLNLTENQILEIGSMSALIHSIAALIIPLIALRFIVSSKEIIKNIRYIYLSIFSCTVPYFLLAQVNYEFPALVGGAIGLFISIFLADRGIGLEKTENALNGPVVNFPNVVKALFPTGLLIIILIITRLQQLPFKSIMNDTTSWFSVQLGSLGTFDISRGLILSLKDIFSTQISASYKLLYVPALLPFIVTVLIAIPIFSITKTQAKDIFASSFKQTKNPFFALVGALIMVNLMLVGGDNSMVKIIGKSFAEATGQYWTIFSSYLGAVGAFFSGSNTVSNLTFGSVQLSTAELTGLSSTLILALQSVGGSMGNMVCINNIVAVSSVLNINNVEGVIIKRTVLPMIIYGIIAAIVAITIVPLIY
>NZ_CP043003.1|WP_148325109.1|1300436_1301582_-|FMN-dependent-L-lactate-dehydrogenase-LldD
MIISSANDYREAARRKVPPFMFHYADGGSYAEQTLKRNVNDLENIALRQRVLKDMSQLDTQIKLFGEKLSIPAILAPVGALGMYARRGEVQAAKAAASRNIPFTLSTVSICSIEEVAPKIDRPMWFQLYVLKDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDMHSGMSGPYKEIRRIIQGITHPFWAWDVGVKGKPHTLGNVSHYMGKQIGLDDYIGWLTENFDPSISWKDLEWIREFWDGPMIIKGILDPKDAKDAVLFGADGIVVSNHGGRQLDGVLSSARALPPIAEAVKGEIKILADSGIRNGLDIVRMIALGADACMIGRSFVYALGAAGQLGVENMLDIFKKEMHVAMTLTSNQKISDITKDALVDLSKL
>NZ_CP043003.1|WP_005540120.1|1302210_1303161_-|ribose-phosphate-pyrophosphokinase
MPDIKLFAGNATPELAKRISENLFTKLGDATVGRFSDGEVQVQINENVRGSDVFIIQSTCAPTNDNLMELLVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSGVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLLDDIRKKTDLTNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPRANVSKVMHIIGDVADRDCILVDDMIDTGGTLCKAAEALKERGARRVFAYATHAVFSGSAAKNIASDALDEVVVTDTIPLSPEIRVLGKVRTLTLSGMLAEAIRRISNEESISAMFNE
>NZ_CP043003.1|WP_148325110.1|1303205_1304117_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKTYQFSTALFTPETLQSEQGVRFPCPAKLNLFLYINGKRADGYHELQTLFQFVDFGDWLHIKARSDGKIRLTPAIANLKSEDNLIYRAAKLLQQHTSCTLGAEFILDKILPIGGGVGGGSSNAATTLVALNHLWKTGLSTGQLAELGLTLGADVPIFVHGKAAFTEGIGEKITYCEPPEKWYLVLKPNVSISTAVVFSDPHLPRNTPKKSLAQLLAGKYANDCEKVVRDHYSEVEESLNWLVKYAPARLTGTGACVFAEFDDKKSAQSVLQAKPKNCFGFVAKGLNHSPLHEMLKNVPDSTN

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Crispr_ID: NZ_CP043003_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043003_2

1922674-1922884

Orphan

I-F

Consensus_repeat	Method
CCACTTCACTGCCGAATAGGCAGCTTAGAAA	PILER-CR
CTTCACTGCCGAATAGGCAGCTTAGAAA	CRISPRCasFinder
CTTCACTGCCGAATAGGCAGCTTAGAAA	CRT

3 spacers

The CRISPR arrays of NZ_CP043003_2

>merge|NZ_CP043003|2|1922674-1922884|PILER-CR,CRISPRCasFinder,CRT
CCACTTCACTGCCGAATAGGCAGCTTAGAAAGCCGCGATGTTGCAAATCTTGTTAGGGCTCCGCTTCACTGCCGAATAGGCAGCTTAGAAATACATGTTCATGTGTACCATAAATCGGTGCAACTTCACTGCCGAATAGGCAGCTTAGAAAATCTATCGTTAAATTTAACCCCGTTCGCCACGCTTCACTGCCGAATATGCAACTCTTCAA

>NZ_CP043003|2|1|1922674-1922824|PILER-CR
CCACTTCACTGCCGAATAGGCAGCTTAGAAA	GCCGCGATGTTGCAAATCTTGTTAGGGCT
CCGCTTCACTGCCGAATAGGCAGCTTAGAAA	TACATGTTCATGTGTACCATAAATCGGTG
CAACTTCACTGCCGAATAGGCAGCTTAGAAA

>NZ_CP043003|2|2|1922677-1922884|CRISPRCasFinder
CTTCACTGCCGAATAGGCAGCTTAGAAA	GCCGCGATGTTGCAAATCTTGTTAGGGCTCCG
CTTCACTGCCGAATAGGCAGCTTAGAAA	TACATGTTCATGTGTACCATAAATCGGTGCAA
CTTCACTGCCGAATAGGCAGCTTAGAAA	ATCTATCGTTAAATTTAACCCCGTTCGCCACG
CTTCACTGCCGAATATGCAACTCTTCAA

>NZ_CP043003|2|1|1922677-1922884|CRT
CTTCACTGCCGAATAGGCAGCTTAGAAA	GCCGCGATGTTGCAAATCTTGTTAGGGCTCCG
CTTCACTGCCGAATAGGCAGCTTAGAAA	TACATGTTCATGTGTACCATAAATCGGTGCAA
CTTCACTGCCGAATAGGCAGCTTAGAAA	ATCTATCGTTAAATTTAACCCCGTTCGCCACG
CTTCACTGCCGAATATGCAACTCTTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043003.1\|WP_148325557.1\|1930756_1931077_+\|DUF440-family-protein	unknown	unknown	gnl\|CDD\|179934
NZ_CP043003.1\|WP_148325553.1\|1926000_1926987_+\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NZ_CP043003.1\|WP_148325558.1\|1931191_1932019_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP043003.1\|WP_148325551.1\|1919904_1920933_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP043003.1\|WP_005566749.1\|1914476_1914980_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043003.1\|WP_148325547.1\|1914986_1915682_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP043003.1\|WP_148325546.1\|1913823_1914477_-\|cobalt-transporter-CbiM	unknown	unknown	gnl\|CDD\|235760
NZ_CP043003.1\|WP_005538329.1\|1918983_1919667_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NZ_CP043003.1\|WP_148325549.1\|1916569_1917241_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP043003.1\|WP_148325550.1\|1917249_1918971_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP043003.1\|WP_148325560.1\|1933105_1934074_-\|23S-rRNA-pseudouridine(2605)-synthase-RluB	unknown	unknown	gnl\|CDD\|182659
NZ_CP043003.1\|WP_148325552.1\|1920988_1922497_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP043003.1\|WP_148325554.1\|1926970_1927684_-\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP043003.1\|WP_148325561.1\|1934128_1934752_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NZ_CP043003.1\|WP_148325559.1\|1932103_1933075_-\|HTH-type-transcriptional-regulator-CysB	unknown	unknown	gnl\|CDD\|183678
NZ_CP043003.1\|WP_148325556.1\|1929285_1930284_+\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP043003.1\|WP_148325866.1\|1934825_1935950_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NZ_CP043003.1\|WP_005573686.1\|1919750_1919912_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043003.1\|WP_148325555.1\|1927876_1928980_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP043003.1\|WP_148325548.1\|1915860_1916553_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148

Protein	Function_ID	Function_description	E-value
NZ_CP043003.1\|WP_148325557.1\|1930756_1931077_+\|DUF440-family-protein	gnl\|CDD\|179934	PRK05094, PRK05094, dsDNA-mimic protein; Reviewed.	6.41366e-52
NZ_CP043003.1\|WP_148325553.1\|1926000_1926987_+\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NZ_CP043003.1\|WP_148325558.1\|1931191_1932019_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP043003.1\|WP_148325551.1\|1919904_1920933_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP043003.1\|WP_148325547.1\|1914986_1915682_-\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	7.39315e-42
NZ_CP043003.1\|WP_148325546.1\|1913823_1914477_-\|cobalt-transporter-CbiM	gnl\|CDD\|235760	PRK06265, PRK06265, cobalt transporter CbiM.	1.39148e-66
NZ_CP043003.1\|WP_005538329.1\|1918983_1919667_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	3.29369e-98
NZ_CP043003.1\|WP_148325549.1\|1916569_1917241_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.41674e-37
NZ_CP043003.1\|WP_148325550.1\|1917249_1918971_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP043003.1\|WP_148325560.1\|1933105_1934074_-\|23S-rRNA-pseudouridine(2605)-synthase-RluB	gnl\|CDD\|182659	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB.	5.02582e-166
NZ_CP043003.1\|WP_148325552.1\|1920988_1922497_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP043003.1\|WP_148325554.1\|1926970_1927684_-\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.06387e-99
NZ_CP043003.1\|WP_148325561.1\|1934128_1934752_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	5.98823e-124
NZ_CP043003.1\|WP_148325559.1\|1932103_1933075_-\|HTH-type-transcriptional-regulator-CysB	gnl\|CDD\|183678	PRK12681, cysB, HTH-type transcriptional regulator CysB.	0
NZ_CP043003.1\|WP_148325556.1\|1929285_1930284_+\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP043003.1\|WP_148325866.1\|1934825_1935950_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NZ_CP043003.1\|WP_148325555.1\|1927876_1928980_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP043003.1\|WP_148325548.1\|1915860_1916553_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	2.6076e-129

>NZ_CP043003.1|WP_148325552.1|1920988_1922497_+|lysine--tRNA-ligase
MSEQEVKELDLNGEMLVRREKLAALRAKGNAFPNQFRRDALAQDLHDKYDAEEGEALKEKHIEVAVAGRIMTRRAMGKATFVTIQDMSGKIQLYVARDNLPEGVYKDDVGHWDLGDIVGIKGSLFKTKTDELTVKATEVQLLTKALRSLPDKFHGLTDQEVRYRQRYLDLISNEESRRTFIIRSKVVAGIREYFLSKGFMEVETPMLQVIPGGATARPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMLEYYQAYADYHDLMDNTEELLRKLAIDILGTTIVKYGDLEFDFGKPFERITLHDATIKYGAEKGIVKEDLYDFNRAKATAERLGIEVQKSWGLGSIVNAIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQNDRFDAQVTAKEAGDDEAMFKDEDFVIALEHGLPPTAGEGLGIDRLAMLYANAPSIRDVILFPAMRQK
>NZ_CP043003.1|WP_148325551.1|1919904_1920933_+|peptide-chain-release-factor-2
MFDFDAKVERLEEVNAELEQPDVWNDAEKAQALGKERVSLELVVNTIKNLEQGLEDVDGLLELAVEAGDEDTFNEAIAELNELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIAVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKAGL
>NZ_CP043003.1|WP_005573686.1|1919750_1919912_+|hypothetical-protein
MEFRSLYPIPAKSLIIPHLIYLFTTFIIMFEINPIKNKIADLTDRTSVLRGYL
>NZ_CP043003.1|WP_005538329.1|1918983_1919667_-|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKKIITTLSLLAISMSVTANDAALKSKLEKLGVKDIDIQTSPIKGLKTVVSDQGIFYASEDGEYLLQGKIYKLTDKGISNVTNKVLLDKLNALKNEMIVYPAKNEKHVITVFMDITCHYCHLLHQQVKEYNDLGITVRYLAFPRAGMESQTAGQMEAIFTAKDPTFALNEAEKGNLPKELKTPNVVRKHYLLGAQFGVNGTPTIITSEGEVIGGYLKPADLLAALEG
>NZ_CP043003.1|WP_148325550.1|1917249_1918971_-|single-stranded-DNA-specific-exonuclease-RecJ
MQKQILRREVPAGNKLCDDPLLDRLYRSRHIKNACQLDRTLAAIHNPNLMSGLDDAVALLLEAYEKQQKIVIVGDFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDNGVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYLMLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRCRFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALALELDSLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQFHRPVIAFAQEQDGILKGSVRSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINENYFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLFDGEFKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSIKTAKLVYKLDINEFRGNRDIQLLIDYIEPLEN
>NZ_CP043003.1|WP_148325549.1|1916569_1917241_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MLRVGLFIMLLCVGGFAAAQAGDESVAPDPAVLLDEESPEFEDGKDYFSYEYPIAMPARNDHRVIIQFFFDYDCRVCSSAQDILELYTQINRDRVVLEEFPVATNKARFTAGVFFSLQALNAEHLSSALLFETSERQRYIKLSRIENLVYWLQKQGIERDSFLEMYHSDQIHQKVNDAVLMTEEYGVFTFPYVIINGKYVLTASTLYNDDYALAVLDFLVNRK
>NZ_CP043003.1|WP_148325548.1|1915860_1916553_-|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MKIGIVGAMAQEVEILVGLMSDKNVTKLASGTIYEGKIHGKNIALLQSGIGKVAAAMGTTALLQLAKPNLVINTGSAGGVAEGLHVGDVIVSTETQYHDADVTAFGYAKGQLPTCPVTFVSDARLVELAERTAKQLGQRVKRGLICSGDSFIQGGERLAQIKQDFPNVIAVEMEATAIAQVCHAFNVPFVVVRAISDAGDGKANMSFEEFLPLAAKQSSDMVVAMLAELN
>NZ_CP043003.1|WP_148325547.1|1914986_1915682_-|DUF4198-domain-containing-protein
MKFKKTTAILTALFAASVANAHNVWLEPVKEANSTGQYVVKFGHEQTEIYPEHKLKTVKLLDNNGNLTNATHQFKQGEAYLNAENASQVFIRFDNGVWSKLPSGKYVEKTKQQEPTAEFAVNPVKFGKAILHWDAQALKAHGMEYELVPQEKAQAGKLLPILVLHNGKPVKDIKVGLGEDAPFNLTNEKGIAEFTPQKGNNKVWAEFSENVKGNPDYDRRSVEYMLTFEAE
>NZ_CP043003.1|WP_005566749.1|1914476_1914980_-|hypothetical-protein
MKKTPYFLTALLGLCVAPHAWTHALYVFAQYDGQTVTGKSYYSDMTPAVETYVEVLRQGENQPLLTGKTDNGGYFHLPLKADPNMALKVVVEGEEGHRATVVADRITANAGATTRAGDESLLLLRGDIAQLRDKIYLHDILGGIGYIVGIAGIAAWLKARKLRKGHQ
>NZ_CP043003.1|WP_148325546.1|1913823_1914477_-|cobalt-transporter-CbiM
MHLSEGVLHTPVLLAGVALTVVGVAVGLRRLDNERLPLTALFAAAFFVAGTIHVPVGIGSVHLILNGMARLFLGWAVFPAFLIALLLQVLFFSFGGFAVLGVNLCVMALPAVAAHYLLRGYLHPDMGKMAKLFAGVGVGVIGVGGAGALASLVLELDGGKHYQDLIVLLLLSHLPVFVLDSIISYGVISLLGKMYPVALQPVALSQKTMSYSKRCAQ
>NZ_CP043003.1|WP_148325553.1|1926000_1926987_+|catabolite-repressor/activator
MKLDEIAKLAGVSCTTVSYVVNGKAKQYRVSDSTIEKVQALIKQYDFKPNAMAASLRVGKSKTIGLVIPDFENISYAKIANNLENRLREKGYQLLIACSNDKVENEQDCVKHLLQRQVDALLVSSALPPDTDFYQNASVPIIGFDRRISSPKVVNALTDDEGDTYRLTKELLKIPHQKRILFFGALPDLPTSREREEGFRSALRYRKASAEYLYGDMFRKNEAAQCFAQWLENNPLPTAIFTTSFTLLEGVLLVLLQKLGQVPKDLVIATFGHVEMLELLENRVLCSVQDYDKVSQSLLTLTFDAMSKKHKNRVNTTPLTRSIIKYHC
>NZ_CP043003.1|WP_148325554.1|1926970_1927684_-|DUF218-domain-containing-protein
MKLNLKEKLQAYLTATQIKRIGRYFALFFAGFALLLIVVDQIIGYYVRKDIYYDIDKVPNRPYGLVLGTSKYFSNNTLNLFYYNRLLAAQRLFEARKVDYLLLSGDNRTLQYNEPRTMLQDLKKMGVPQDFIYLDFAGFRTLDSVIRADQVFKAHSLTIISQKFHCERALFIAKFHNIDAICFAADYPQVYSFVRVREFFARLQAVWDLLVEREPHFLGAPEPLPPPVTIPDVNSDI
>NZ_CP043003.1|WP_148325555.1|1927876_1928980_+|homoserine-O-acetyltransferase
MTIKKTTVFTHQPLHLVLGGQLQQIDVAYQTYGELNADKNNAVLICHALTGDAEPYFDKSTNQEGWWQNFMGDGLALDTSRYFFICSNVLGGCKGTTGPSSINPQTNRPYGSEFPAVIVQDIIKVQRALLDFLEIPHLHAIIGGSFGGMQATQWAIDYPDFVSNVVNLCSSLSLSAEAIGFNHVMRQAVMNDPNFNNGDYYDGERPDKGLAIARMLGMLTYRTDVQLSKAFGRATKAEGHLQGDYFQVESYLSYQGQKFLTRFDANSYLHLLRALDLYDPSIGYADLKTALSRIKARYTLVSVDNDQLFKLPELRKSKQLLEQYGVNLNYYEFNSDYGHDAFLVDYAFFENKIRNGLAGGNQDLTKK
>NZ_CP043003.1|WP_148325556.1|1929285_1930284_+|HTH-type-transcriptional-repressor-PurR
MATIKDVAKMAGVSTTTVSHVINKTRFVAAETKQQVLQAIKDLNYSPSAVARSLKVNTTKSIGMIVTTSEAPYFAEIIHAVEEHCYRQGYSLFLCNTQNNAEKIKNHLVMLAKKRVDGILVMCSEYLQDPQDLLTAFSSIPMVVMDWGPNAHTNIIQDNSFDGGYLATKHLIENGHKNIGIIAGELNKTTAKTRYEGFVHAMQEAGLAINPNWVMEGFFEPEDGYECMNKILRQETLPTAVFCCNDVMALGAISAIGEKGLCVPDDISIIGYDNIHASRFYSPPLTTIHQSKSRLSVQAVNLLFERINHKSDQRKTIEIHPELVIRKSVKKL
>NZ_CP043003.1|WP_148325557.1|1930756_1931077_+|DUF440-family-protein
MTELTRLDPDKAIDIAYDIFLEIAPENLDPADIMLFNLQFEEHGAVEFVETADNWEEQIGILIDPQEYAEVWIGLVNKQDEMDNIFAKFLISHREEDRQYHIIWKA
>NZ_CP043003.1|WP_148325558.1|1931191_1932019_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSNLQQLIENAFEKRTEITPKTIDVQTRAAVEEVIEGLDSGKYRVAEKIDGEWVTHQWLKKAVLLSFRINDNQLVEGAETKYYDKVPLKFADYTEERFQQEGFRVVPSATVRKGAYIAKNCVLMPSYVNIGAHVGEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIGDNCFIGARSEVVEGVIVEDGCVISMGVFIGQSTKIYDRETGEVYYGRVPAGSVVVSGSLPSKDGKYSLYCAVIVKKVDAKTLGKVGINELLRSIEE
>NZ_CP043003.1|WP_148325559.1|1932103_1933075_-|HTH-type-transcriptional-regulator-CysB
MKFQQLRYVVEIVNQNYNVTEAAHALYTSQPGISKQVRLLENELGLEIFDRHGKHIKGLTPAGKKIVGISRELMVKMQAIRSVSDEYTKPDHGVLRIATTNTQARYMLPHVVERFAKRYPDVSLHIHQGSPMQIYDVLLSGEVDLAITTEAQYLLDGVVLLPCYIWNRSVIVKSDHPLAKCELLTIEELGKYPLITYTFGFTGVSDLDYAFNGAGILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTPADVDLVALKSDHLFRASMTQIAFKHGAFLRNYMYDFINYFSPHLTRENVERAERMHDNNAVKRLFDDVRLKTL
>NZ_CP043003.1|WP_148325560.1|1933105_1934074_-|23S-rRNA-pseudouridine(2605)-synthase-RluB
MKPTTKRTQNRPHFSSNKDKNATAKPRPISSASKTSAAEGEKLQKVLARAGQGSRREIEAIIAENRVSVDGKIATLGDRINVHAGVKVRIDGHLINLTQAQKEVCRVLMYYKPEGELCTRHDPEGRATVFDRLPRLTGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDDAMLNRLKKGVQLEDGPANFKEIKVVGGVGMNQWFDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKTLPRGGWQEMELADVNYLRELVGLPPETETKLGANKTRHKPKFGRIRKAVKRYSELNKRYKK
>NZ_CP043003.1|WP_148325561.1|1934128_1934752_-|threonylcarbamoyl-AMP-synthase
MSQFFYIHPENPQVRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELSTYSLVTNSAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGIRVPDNQIALDLLKALGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHKVDLIIHGGYLGQEPTTVVDLTGDTPVILREGSGAVTPFI
>NZ_CP043003.1|WP_148325866.1|1934825_1935950_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MERLAELREQIDSLDQELLQLLAKRQQVVYKVGEVKQQHGLPIYAPQREAEMLQRKREAAEQMGLSPNLIEDVLRRIMRESYVSENQFGFKTVNPQIRKIVIVGGRGKLGSLFCRYLQGSDYQVKCLERDGWARADQILQHADVVIVSVPIANTLAVIERIKPYLTENMLLVDFTSVKRTPLEKMLEVHQGAVVGLHSMFGPDVVSMAKQVVVCCDGRFSERYQWLLQQIQIWGAKIYQVDAAEHDHHMTYIQALRHFSTFVYGLYLSQQTVDLEKLLALSSPIYRLELAMVGRLFAQDAALYADIIGHKPENLAVIEHFKDSYETGLAFFKHHDRQGFIEQFNQIRDWFGGYSEQFLQESRQLLQQANDSRNV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043003_2	2.5\|1922825\|32\|NZ_CP043003\|CRISPRCasFinder,CRT	1922825-1922856	32	AJ560763	Bacteriophage Aaphi23 complete genome	14851-14882	2	0.938
NZ_CP043003_2	2.5\|1922825\|32\|NZ_CP043003\|CRISPRCasFinder,CRT	1922825-1922856	32	NC_004827	Bacteriophage Aaphi23, complete genome	14851-14882	2	0.938
NZ_CP043003_2	2.5\|1922825\|32\|NZ_CP043003\|CRISPRCasFinder,CRT	1922825-1922856	32	GQ866233	Aggregatibacter phage S1249, complete sequence	28211-28242	2	0.938
NZ_CP043003_2	2.2\|1922765\|29\|NZ_CP043003\|PILER-CR	1922765-1922793	29	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	78403-78431	6	0.793
NZ_CP043003_2	2.2\|1922765\|29\|NZ_CP043003\|PILER-CR	1922765-1922793	29	NZ_CP047088	Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence	6932-6960	6	0.793
NZ_CP043003_2	2.4\|1922765\|32\|NZ_CP043003\|CRISPRCasFinder,CRT	1922765-1922796	32	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	78403-78434	7	0.781
NZ_CP043003_2	2.4\|1922765\|32\|NZ_CP043003\|CRISPRCasFinder,CRT	1922765-1922796	32	NZ_CP047088	Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence	6929-6960	7	0.781

1. spacer 2.5|1922825|32|NZ_CP043003|CRISPRCasFinder,CRT matches to AJ560763 (Bacteriophage Aaphi23 complete genome) position: , mismatch: 2, identity: 0.938

atctatcgttaaatttaaccccgttcgccacg	CRISPR spacer
atctgtcgttaaatttaaccccgttcgctacg	Protospacer
****.***********************.***

2. spacer 2.5|1922825|32|NZ_CP043003|CRISPRCasFinder,CRT matches to NC_004827 (Bacteriophage Aaphi23, complete genome) position: , mismatch: 2, identity: 0.938

atctatcgttaaatttaaccccgttcgccacg	CRISPR spacer
atctgtcgttaaatttaaccccgttcgctacg	Protospacer
****.***********************.***

3. spacer 2.5|1922825|32|NZ_CP043003|CRISPRCasFinder,CRT matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 2, identity: 0.938

atctatcgttaaatttaaccccgttcgccacg	CRISPR spacer
atctgtcgttaaatttaaccccgttcgctacg	Protospacer
****.***********************.***

4. spacer 2.2|1922765|29|NZ_CP043003|PILER-CR matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 6, identity: 0.793

tacatgttcatgtgtaccataaatcggtg	CRISPR spacer
ttcatgttcatatgaaccataaatctttt	Protospacer
* *********.** **********  *

5. spacer 2.2|1922765|29|NZ_CP043003|PILER-CR matches to NZ_CP047088 (Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence) position: , mismatch: 6, identity: 0.793

tacatgttcatgtgtaccataaatcggtg	CRISPR spacer
ttcatgttcatatgaaccataaatctttt	Protospacer
* *********.** **********  *

6. spacer 2.4|1922765|32|NZ_CP043003|CRISPRCasFinder,CRT matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 7, identity: 0.781

tacatgttcatgtgtaccataaatcggtgcaa	CRISPR spacer
ttcatgttcatatgaaccataaatcttttcat	Protospacer
* *********.** **********  * **

7. spacer 2.4|1922765|32|NZ_CP043003|CRISPRCasFinder,CRT matches to NZ_CP047088 (Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence) position: , mismatch: 7, identity: 0.781

tacatgttcatgtgtaccataaatcggtgcaa	CRISPR spacer
ttcatgttcatatgaaccataaatcttttcat	Protospacer
* *********.** **********  * **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

181721 : 231364

uncultured_virus(20.0%)

transposase,integrase,protease

attL 194296:194313|attR 239231:239248

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148323351.1\|181721_181970_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_148323353.1\|182907_183813_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_005564600.1\|183863_184364_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_148323354.1\|184502_185270_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323356.1\|186878_187412_-	ribosome-associated protein	NA	NA	NA	NA
WP_148323358.1\|187528_188890_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_148323360.1\|189128_189668_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.1e-14	32.4
WP_148323362.1\|189738_190878_-	glycerate kinase	W6LM47	Streptococcus_phage	3.7e-49	42.0
WP_148323364.1\|193422_193644_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.3e-14	54.5
194296:194313	attL	NA	NA	NA	NA
WP_148323366.1\|194331_196134_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.1e-52	33.2
WP_148323368.1\|196245_197148_-	lipoprotein NlpI	NA	NA	NA	NA
WP_148323370.1\|197232_199362_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_148323372.1\|199654_200125_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_148323374.1\|200598_201153_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A0F6R5Z1	Sinorhizobium_phage	4.5e-08	30.5
WP_148323376.1\|201274_201727_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_148323378.1\|202540_202747_-	hypothetical protein	NA	NA	NA	NA
WP_025298394.1\|202795_202996_-	hypothetical protein	NA	NA	NA	NA
WP_148323380.1\|203187_203448_-	hypothetical protein	A0A125RN39	Pseudomonas_phage	1.0e-07	48.3
WP_032996596.1\|203637_203850_+	transcriptional regulator	A0A0C4UQU0	Shigella_phage	3.0e-13	53.0
WP_148323382.1\|205151_205562_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_005547787.1\|205563_206115_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA
WP_148323384.1\|206271_206700_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_148323386.1\|206704_207394_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_148323388.1\|207750_208242_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_005702046.1\|208293_208665_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_148323390.1\|208936_212965_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	1.8e-21	26.2
WP_148323392.1\|213067_217336_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	2.4e-69	27.0
WP_148323394.1\|217583_217838_-	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	9.1e-25	65.3
WP_148323396.1\|219060_219447_-	MerR family DNA-binding protein	NA	NA	NA	NA
WP_005547502.1\|219541_219754_+	heavy-metal-associated domain-containing protein	A0A218MNH0	uncultured_virus	7.9e-14	60.6
WP_148323398.1\|219840_222000_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.7e-202	52.9
WP_148323400.1\|222707_223058_+	hypothetical protein	NA	NA	NA	NA
WP_148323402.1\|223050_223374_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_148323404.1\|223436_224669_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.1e-127	55.9
WP_148323406.1\|224678_225260_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.4e-59	60.8
WP_148323408.1\|225501_227103_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_148323410.1\|227334_229608_+	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA
WP_148323412.1\|229684_230221_+	hypothetical protein	NA	NA	NA	NA
WP_079254132.1\|230519_230621_+\|transposase	transposase	NA	NA	NA	NA
WP_148325802.1\|230956_231100_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_148323298.1\|231148_231364_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
239231:239248	attR	NA	NA	NA	NA

DBSCAN-SWA_2

244787 : 308879

Paenibacillus_phage(37.5%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148323354.1\|244787_245555_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323432.1\|245910_247257_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_148323434.1\|247299_247767_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_148323436.1\|247890_248367_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_148323438.1\|248465_249467_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_005540730.1\|249447_249777_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_148323440.1\|249758_250178_-	nucleotidyltransferase	NA	NA	NA	NA
WP_148323442.1\|250217_251075_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_005577219.1\|251185_251953_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_005540737.1\|252125_252569_+	hypothetical protein	NA	NA	NA	NA
WP_148323444.1\|252642_254010_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_148323446.1\|254029_254464_-	DUF2489 domain-containing protein	NA	NA	NA	NA
WP_148323447.1\|254476_255037_-	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_148323448.1\|255535_256303_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-13	34.2
WP_148323449.1\|256447_257470_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_005575896.1\|257605_258265_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_148323450.1\|258645_259335_+	nicotinamide riboside transporter PnuC	U5J9C5	Bacillus_phage	9.7e-37	36.8
WP_148323451.1\|259410_260118_-	methyltransferase	NA	NA	NA	NA
WP_148323452.1\|260207_261539_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	4.5e-46	31.7
WP_148323453.1\|263154_263391_-	hypothetical protein	NA	NA	NA	NA
WP_005566621.1\|264944_265229_+	hypothetical protein	NA	NA	NA	NA
WP_148323454.1\|267432_268386_+	transaldolase	A0A127KNC6	Cyanophage	5.3e-09	31.4
WP_148323455.1\|268517_270515_+	transketolase	NA	NA	NA	NA
WP_148323457.1\|270585_270975_-	RidA family protein	NA	NA	NA	NA
WP_148323459.1\|271051_271510_-	recombination regulator RecX	NA	NA	NA	NA
WP_148323461.1\|271591_272650_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.4e-114	63.3
WP_148323463.1\|272794_274720_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	6.8e-72	31.5
WP_148323465.1\|276399_278094_+	hypothetical protein	NA	NA	NA	NA
WP_148323467.1\|278090_278321_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_005640244.1\|279813_280122_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_032995054.1\|280118_280457_-	toxin	NA	NA	NA	NA
WP_148323469.1\|280621_280888_-	hypothetical protein	NA	NA	NA	NA
WP_148323471.1\|281161_281938_-	hypothetical protein	NA	NA	NA	NA
WP_005594651.1\|281947_282619_-	hypothetical protein	NA	NA	NA	NA
WP_148323473.1\|282807_283314_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_148323475.1\|283526_284012_-	DedA family protein	NA	NA	NA	NA
WP_148323477.1\|284014_284620_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_148323479.1\|284619_285222_-	beta-phosphoglucomutase family hydrolase	NA	NA	NA	NA
WP_148323481.1\|285349_285730_+	PRD domain-containing protein	NA	NA	NA	NA
WP_148323483.1\|286114_288130_-	DNA helicase Rep	A7KV33	Bacillus_phage	1.3e-118	38.4
WP_148323485.1\|288139_288370_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_005548103.1\|288473_289037_-	porin family protein	NA	NA	NA	NA
WP_148323486.1\|289253_292055_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	7.6e-80	34.5
WP_148323488.1\|292069_292171_+	oxygenase	NA	NA	NA	NA
WP_148323354.1\|292488_293256_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323490.1\|293424_295845_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	3.5e-222	49.0
WP_148323354.1\|297350_298118_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323492.1\|298215_298830_+	Tat proofreading chaperone DmsD	NA	NA	NA	NA
WP_148323494.1\|298843_299053_+	ferredoxin	NA	NA	NA	NA
WP_148323496.1\|299194_300103_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_148325807.1\|300152_300413_+	hypothetical protein	NA	NA	NA	NA
WP_005568623.1\|300579_300870_+	nucleotidyltransferase	NA	NA	NA	NA
WP_148323354.1\|301278_302046_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325808.1\|302151_302553_+	hypothetical protein	R9TNR7	Vibrio_phage	5.5e-32	51.2
WP_148323498.1\|302633_304700_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_148323500.1\|304766_306401_-	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.9e-155	51.1
WP_148323502.1\|306538_307930_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
WP_148323354.1\|308111_308879_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2

DBSCAN-SWA_3

467388 : 527714

Paenibacillus_phage(30.77%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148323191.1\|467388_468156_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148323706.1\|468869_469541_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_148323170.1\|470802_471255_-	hypothetical protein	NA	NA	NA	NA
WP_148323354.1\|473465_474233_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323708.1\|474402_475176_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_148323710.1\|475252_475780_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	6.9e-59	64.5
WP_005561313.1\|475942_477187_+	tryptophan permease	NA	NA	NA	NA
WP_005538649.1\|477465_477783_+	DUF4298 domain-containing protein	NA	NA	NA	NA
WP_005538650.1\|478164_478872_-	acid phosphatase AphA	NA	NA	NA	NA
WP_148323712.1\|479086_479614_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_005538655.1\|479634_480966_+	HslU--HslV peptidase ATPase subunit	A0A2H5BJT2	Erwinia_phage	5.4e-44	30.4
WP_148323714.1\|481031_482615_+	nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA	NA	NA	NA
WP_032996149.1\|482713_483457_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_005538674.1\|483474_483969_+	YfbU family protein	NA	NA	NA	NA
WP_148323716.1\|485398_486067_+	hypothetical protein	NA	NA	NA	NA
WP_148323718.1\|486136_486991_-	DEAD/DEAH box helicase family protein	J7FAE2	Agrobacterium_phage	4.4e-15	28.3
WP_109422798.1\|487058_487265_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_109422797.1\|487337_487802_+	hypothetical protein	NA	NA	NA	NA
WP_148323720.1\|488400_489162_+	transcriptional regulator	NA	NA	NA	NA
WP_033001569.1\|490353_490671_+	hypothetical protein	NA	NA	NA	NA
WP_148323722.1\|491019_491505_-	type 3 dihydrofolate reductase	A0A076GDN3	Bacillus_phage	3.4e-36	45.3
WP_148323724.1\|491544_492009_-	threonine/serine exporter	NA	NA	NA	NA
WP_148323726.1\|492010_492796_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_148323354.1\|493049_493817_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323728.1\|493855_494614_-	TonB family protein	NA	NA	NA	NA
WP_148323730.1\|494623_495070_-	TonB system transport protein ExbD	NA	NA	NA	NA
WP_005538526.1\|495073_495544_-	TonB-system energizer ExbB	NA	NA	NA	NA
WP_014167584.1\|495718_496981_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_148323732.1\|497055_497850_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_148323734.1\|498003_499383_+	signal recognition particle protein	NA	NA	NA	NA
WP_148323736.1\|499533_499767_-	hypothetical protein	NA	NA	NA	NA
WP_148323738.1\|500881_502006_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	NA	NA	NA
WP_148323740.1\|502144_502552_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_148323742.1\|502665_503415_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_148323744.1\|503395_503668_-	hypothetical protein	NA	NA	NA	NA
WP_148325813.1\|503636_505004_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.9e-111	46.6
WP_148323746.1\|505027_505639_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_148323748.1\|505751_506162_+	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_005539986.1\|506300_506837_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_148325814.1\|506909_507836_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_148323750.1\|507914_508778_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_148323752.1\|508793_509621_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	1.9e-07	41.5
WP_148325815.1\|509711_510131_+	nucleotidyltransferase	NA	NA	NA	NA
WP_148323754.1\|510114_510408_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_148323755.1\|510426_511068_+	diadenosine tetraphosphatase	NA	NA	NA	NA
WP_148323757.1\|511188_513777_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	7.0e-189	43.0
WP_148323759.1\|513918_514422_+	hypothetical protein	NA	NA	NA	NA
WP_148323761.1\|514421_515456_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_005544584.1\|515947_516352_-	8-oxo-dGTP diphosphatase MutT	NA	NA	NA	NA
WP_148323763.1\|516428_519128_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_005561253.1\|519200_519518_-	DUF2547 family protein	NA	NA	NA	NA
WP_005561250.1\|519609_519921_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_148323766.1\|520041_520452_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_148323768.1\|520520_523352_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	56.9
WP_042889788.1\|523522_524008_+	single-stranded DNA-binding protein	I3PUY5	Vibrio_phage	3.0e-40	57.9
WP_148323770.1\|524329_525262_+	nucleotidyltransferase	NA	NA	NA	NA
WP_148323772.1\|525263_526886_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA
WP_148323191.1\|526946_527714_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1

DBSCAN-SWA_4

822724 : 898195

Haemophilus_phage(20.0%)

plate,transposase,tRNA,integrase

attL 840615:840634|attR 895775:895794

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148324318.1\|822724_824104_-\|tRNA	cysteine--tRNA ligase	H2EDD6	Moumouvirus	4.6e-46	35.3
WP_005543917.1\|824203_824716_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_148324321.1\|824758_825550_+	TatD family deoxyribonuclease	NA	NA	NA	NA
WP_005547651.1\|825576_826044_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	A0A2D0YLR2	Vibrio_phage	3.2e-52	58.9
WP_148324324.1\|826498_828625_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.2e-258	63.0
WP_148324328.1\|828878_834779_-	collagen-binding adhesin autotransporter EmaA	NA	NA	NA	NA
WP_148324331.1\|835123_836911_-	AMP-binding protein	A0A1V0SBX8	Catovirus	4.7e-43	26.4
WP_148324334.1\|837109_840586_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.1e-204	37.4
840615:840634	attL	NA	NA	NA	NA
WP_148325830.1\|841136_841202_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_148324337.1\|841704_843159_-	catalase	A0A2K9L572	Tupanvirus	3.9e-96	38.4
WP_148324340.1\|843649_844999_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_148324343.1\|845194_846571_-	argininosuccinate lyase	NA	NA	NA	NA
WP_148324345.1\|846683_847472_-	glycosyl transferase	NA	NA	NA	NA
WP_005558509.1\|848055_849501_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_148325831.1\|849678_850710_-\|integrase	tyrosine-type recombinase/integrase	Q7Y5X7	Haemophilus_phage	2.0e-195	98.0
WP_099308953.1\|850598_850946_-	helix-turn-helix domain-containing protein	Q7Y5X6	Haemophilus_phage	1.9e-57	99.1
WP_015971210.1\|850961_851276_-	hypothetical protein	Q7Y5X5	Haemophilus_phage	4.2e-56	100.0
WP_148324348.1\|851584_852010_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	6.2e-26	78.7
WP_060828809.1\|852043_852226_-	hypothetical protein	Q776W8	Haemophilus_phage	5.0e-25	98.3
WP_148324351.1\|852460_853105_+\|plate	baseplate protein	D0UIH7	Aggregatibacter_phage	2.0e-116	97.2
WP_005545972.1\|853101_853461_+	hypothetical protein	Q7Y5S5	Haemophilus_phage	5.2e-66	100.0
WP_148324355.1\|853486_853906_-	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-27	44.6
WP_148324358.1\|853957_854140_-	addiction module toxin, HicA family	A0A2H4JDU5	uncultured_Caudovirales_phage	1.2e-05	44.1
WP_148324361.1\|854393_855545_+	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.4e-35	28.7
WP_148324364.1\|855851_856751_+	phage repressor protein/antirepressor Ant	D0UIK6	Aggregatibacter_phage	1.9e-101	65.9
WP_148324367.1\|857652_859800_-	ribose ABC transporter ATP-binding protein RbsA	A0A2K9L0W2	Tupanvirus	4.9e-18	22.1
WP_148324370.1\|859810_860230_-	D-ribose pyranase	NA	NA	NA	NA
WP_148324373.1\|860449_861049_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_148324376.1\|861051_861849_+	TSUP family transporter	NA	NA	NA	NA
WP_148324379.1\|861857_862655_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_148324382.1\|862651_863503_+	thymidylate synthase	H9EB68	Vibrio_phage	4.0e-133	77.4
WP_148324385.1\|863557_863824_-	hypothetical protein	NA	NA	NA	NA
WP_148325832.1\|863826_864354_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_148324388.1\|864585_864984_-	hypothetical protein	NA	NA	NA	NA
WP_148324391.1\|866465_868580_-	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA
WP_148324394.1\|868611_868884_-	hypothetical protein	NA	NA	NA	NA
WP_005542522.1\|869114_869798_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_148324397.1\|870103_871762_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.7e-77	34.3
WP_148324400.1\|871970_873230_+	murein hydrolase activator EnvC	A0A7K9	Microcystis_virus	5.9e-08	38.7
WP_148324403.1\|873278_874055_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_148324406.1\|874066_874771_-	AAA domain-containing protein	NA	NA	NA	NA
WP_148324409.1\|874905_875568_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_148324412.1\|877479_878373_+	AAA family ATPase	NA	NA	NA	NA
WP_148324415.1\|878330_879449_+	TniQ family protein	NA	NA	NA	NA
WP_148324418.1\|879409_880861_+	hypothetical protein	NA	NA	NA	NA
WP_148324421.1\|880984_881203_+\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
WP_148324424.1\|881687_883268_+	recombinase family protein	NA	NA	NA	NA
WP_148324427.1\|883209_884058_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_148324429.1\|884050_884905_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_148324432.1\|885144_885912_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148324435.1\|885929_886196_-	hypothetical protein	NA	NA	NA	NA
WP_148324438.1\|886824_887286_+	hypothetical protein	NA	NA	NA	NA
WP_148324440.1\|887319_887754_+	hypothetical protein	NA	NA	NA	NA
WP_148324443.1\|887988_888276_+	hypothetical protein	NA	NA	NA	NA
WP_148324446.1\|888896_889124_-	hypothetical protein	NA	NA	NA	NA
WP_005559226.1\|889387_889903_-	hypothetical protein	NA	NA	NA	NA
WP_148324449.1\|889906_895846_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	5.3e-22	25.3
895775:895794	attR	NA	NA	NA	NA
WP_148324451.1\|896117_896777_+	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	1.1e-40	39.4
WP_148324454.1\|897427_898195_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1

DBSCAN-SWA_5

929699 : 966693

Paenibacillus_phage(50.0%)

transposase,tRNA,integrase

attL 929210:929227|attR 972390:972407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
929210:929227	attL	NA	NA	NA	NA
WP_148324523.1\|929699_930686_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_148324527.1\|930688_932086_-	chloride channel protein	A0A1X9I5Z9	Streptococcus_phage	9.5e-07	26.2
WP_148324530.1\|932328_933333_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_005550982.1\|933342_934275_+	carbamate kinase	NA	NA	NA	NA
WP_148324532.1\|934391_935921_+	YfcC family protein	NA	NA	NA	NA
WP_148324535.1\|936011_936479_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148324538.1\|936576_937716_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_148324541.1\|937733_939077_-	TIGR00366 family protein	NA	NA	NA	NA
WP_148324544.1\|939079_939730_-	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_148324547.1\|939741_940395_-	acetate CoA-transferase subunit alpha	NA	NA	NA	NA
WP_148323191.1\|940577_941345_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_001181005.1\|942706_943018_+	30S ribosomal protein S10	NA	NA	NA	NA
WP_005539427.1\|943034_943661_+	50S ribosomal protein L3	NA	NA	NA	NA
WP_005556240.1\|943676_944279_+	50S ribosomal protein L4	NA	NA	NA	NA
WP_148324549.1\|944275_944578_+	50S ribosomal protein L23	NA	NA	NA	NA
WP_005545487.1\|944598_945420_+	50S ribosomal protein L2	NA	NA	NA	NA
WP_005539416.1\|945444_945720_+	30S ribosomal protein S19	NA	NA	NA	NA
WP_005539363.1\|945730_946063_+	50S ribosomal protein L22	NA	NA	NA	NA
WP_148324552.1\|946079_946787_+	30S ribosomal protein S3	NA	NA	NA	NA
WP_005539359.1\|946800_947211_+	50S ribosomal protein L16	NA	NA	NA	NA
WP_148324555.1\|947210_947402_+	50S ribosomal protein L29	NA	NA	NA	NA
WP_005539352.1\|947401_947659_+	30S ribosomal protein S17	NA	NA	NA	NA
WP_148323299.1\|948195_948501_-\|transposase	transposase	Q716C2	Shigella_phage	1.2e-20	50.5
WP_148323298.1\|948497_948713_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_148325802.1\|948761_948905_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_079254132.1\|949240_949342_-\|transposase	transposase	NA	NA	NA	NA
WP_061866575.1\|950120_951698_-	pilus assembly protein TadG	NA	NA	NA	NA
WP_014702429.1\|951714_952293_-	pilus assembly protein TadF	NA	NA	NA	NA
WP_014702430.1\|952358_952934_-	pilus assembly protein	NA	NA	NA	NA
WP_148324558.1\|952947_953709_-	NrfG protein	NA	NA	NA	NA
WP_014702432.1\|953698_954565_-	type II secretion system F family protein	NA	NA	NA	NA
WP_014702433.1\|954561_955449_-	type II secretion system F family protein	NA	NA	NA	NA
WP_014702434.1\|955448_956729_-	CpaF family protein	NA	NA	NA	NA
WP_014702435.1\|956742_957867_-	flp operon protein D	NA	NA	NA	NA
WP_014702436.1\|957882_958386_-	RcpB protein	NA	NA	NA	NA
WP_061866573.1\|958382_959765_-	type II and III secretion system protein family protein	NA	NA	NA	NA
WP_041160765.1\|959766_960591_-	hypothetical protein	NA	NA	NA	NA
WP_041160766.1\|960642_961071_-	type 4 prepilin peptidase 1	NA	NA	NA	NA
WP_041160767.1\|961086_961317_-	Flp family type IVb pilin	NA	NA	NA	NA
WP_014702441.1\|961408_961636_-	Flp family type IVb pilin	NA	NA	NA	NA
WP_014702442.1\|962155_962404_+	hypothetical protein	NA	NA	NA	NA
WP_041160768.1\|962391_962856_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_014702445.1\|963017_963719_+	hypothetical protein	NA	NA	NA	NA
WP_061866572.1\|963722_965648_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_148323354.1\|965925_966693_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
972390:972407	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1317372 : 1382527

Paenibacillus_phage(28.57%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014167741.1\|1317372_1318719_-\|tRNA	tRNA lysidine(34) synthetase TilS	R4TVK3	Phaeocystis_globosa_virus	5.9e-06	19.8
WP_005539240.1\|1318750_1319608_-	pyridoxal kinase PdxY	NA	NA	NA	NA
WP_005545962.1\|1319670_1320624_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_032996591.1\|1321799_1322213_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_148325130.1\|1322406_1323357_+	hypothetical protein	NA	NA	NA	NA
WP_148325132.1\|1323749_1325309_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_005539226.1\|1325340_1325607_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_005539223.1\|1325618_1325891_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_005545992.1\|1325930_1326116_-	hypothetical protein	NA	NA	NA	NA
WP_148325134.1\|1326145_1327498_-	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_005552670.1\|1327873_1328047_-	hypothetical protein	NA	NA	NA	NA
WP_005544187.1\|1328388_1328523_+	hypothetical protein	NA	NA	NA	NA
WP_005551806.1\|1328553_1328748_+\|transposase	transposase	A0A1B1P773	Bacillus_phage	4.7e-05	45.7
WP_005552667.1\|1328881_1329364_-	redoxin family protein	NA	NA	NA	NA
WP_005546457.1\|1329378_1330020_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_148325136.1\|1330023_1331094_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_148325138.1\|1331309_1332017_+	carbonate dehydratase	NA	NA	NA	NA
WP_148325140.1\|1332106_1332694_-	divisome-associated lipoprotein YraP	NA	NA	NA	NA
WP_005546449.1\|1332758_1333343_-	SIS domain-containing protein	NA	NA	NA	NA
WP_005563545.1\|1333355_1333715_-	YraN family protein	NA	NA	NA	NA
WP_148325142.1\|1333724_1335443_-	penicillin-binding protein activator	NA	NA	NA	NA
WP_148325145.1\|1335519_1336368_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.2e-50	44.0
WP_148325147.1\|1336637_1338227_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_148325149.1\|1338404_1339742_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_148325151.1\|1339844_1340435_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_148323448.1\|1340699_1341467_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-13	34.2
WP_148325153.1\|1341516_1342575_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.0e-20	31.0
WP_148325155.1\|1342764_1343589_+	OmpA family protein	NA	NA	NA	NA
WP_148325157.1\|1343653_1344265_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_148325159.1\|1344539_1346795_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	2.8e-85	34.1
WP_148325161.1\|1346802_1347012_-	hypothetical protein	NA	NA	NA	NA
WP_005566521.1\|1347386_1349285_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.3e-93	35.6
WP_148323354.1\|1349514_1350282_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325163.1\|1350675_1351563_+	hypothetical protein	Q9LA60	Enterobacterial_phage	2.1e-15	65.7
WP_148325165.1\|1351666_1353337_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	7.1e-41	26.9
WP_148325167.1\|1353715_1354381_+	zinc transporter binding subunit ZevA	NA	NA	NA	NA
WP_148325169.1\|1354395_1355427_+	zinc transporter permease subunit ZevB	NA	NA	NA	NA
WP_148325171.1\|1356038_1358081_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_148325173.1\|1358307_1359378_+	porin OmpA	NA	NA	NA	NA
WP_148325175.1\|1359568_1360951_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.8e-26	32.7
WP_005540203.1\|1361141_1361552_-	YhcB family protein	NA	NA	NA	NA
WP_148325177.1\|1361719_1363483_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_148325179.1\|1363578_1364784_-	mannose-6-phosphate isomerase, class I	NA	NA	NA	NA
WP_005540212.1\|1364959_1365298_+	YegP family protein	NA	NA	NA	NA
WP_005565455.1\|1365489_1366983_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_148325181.1\|1367040_1367739_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_148325182.1\|1367759_1368461_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_148325184.1\|1368650_1369955_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_005542066.1\|1370016_1371240_+	ROK family transcriptional regulator	NA	NA	NA	NA
WP_148325186.1\|1371957_1372137_-	restriction endonuclease subunit R	NA	NA	NA	NA
WP_148323191.1\|1373146_1373914_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325188.1\|1374750_1374996_-	glycoside hydrolase family 19	NA	NA	NA	NA
WP_148325846.1\|1375228_1375861_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_148325847.1\|1376059_1376317_-	DUF3380 domain-containing protein	NA	NA	NA	NA
WP_148325190.1\|1377995_1378262_-	hypothetical protein	NA	NA	NA	NA
WP_148325192.1\|1378306_1378711_-	hypothetical protein	A0A2H5BJW2	Erwinia_phage	5.7e-05	36.3
WP_148325194.1\|1378982_1379207_+	hypothetical protein	NA	NA	NA	NA
WP_148323354.1\|1381759_1382527_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2

DBSCAN-SWA_7

1536388 : 1544647

Acinetobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148325315.1\|1536388_1536955_+	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.2e-26	34.7
WP_148325316.1\|1537110_1538055_+	2-hydroxyacid dehydrogenase	M1I636	Acanthocystis_turfacea_Chlorella_virus	7.3e-27	31.8
WP_148325317.1\|1538218_1538548_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_148325318.1\|1538815_1539691_-	phosphotransferase	NA	NA	NA	NA
WP_148325319.1\|1539706_1539895_-	hypothetical protein	NA	NA	NA	NA
WP_148325320.1\|1539930_1541862_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-130	37.4
WP_148325321.1\|1542112_1542571_+	type III restriction endonuclease subunit M	Q1MVP0	Enterobacteria_phage	4.0e-47	64.9
WP_005546421.1\|1542597_1542897_+	hypothetical protein	Q71TG1	Escherichia_phage	2.0e-26	62.8
WP_148325322.1\|1543013_1543793_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_071805301.1\|1544104_1544647_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.1e-14	34.5

DBSCAN-SWA_8

1637894 : 1772547

Paenibacillus_phage(30.77%)

integrase,lysis,protease,transposase,tRNA

attL 1700051:1700072|attR 1768472:1768493

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148325383.1\|1637894_1638824_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.8e-124	83.9
WP_005565728.1\|1639000_1639417_+	DoxX family protein	NA	NA	NA	NA
WP_148325384.1\|1639506_1641519_-	TonB-dependent receptor	NA	NA	NA	NA
WP_148325858.1\|1641520_1642150_-	chemotaxis protein	NA	NA	NA	NA
WP_148325385.1\|1642228_1643230_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_148325386.1\|1643229_1644261_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005543485.1\|1645094_1645304_-	molybdenum-pterin-binding protein	NA	NA	NA	NA
WP_148325387.1\|1645385_1646420_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_148325859.1\|1646432_1647221_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.5e-14	32.1
WP_148325388.1\|1648513_1648711_-	hypothetical protein	NA	NA	NA	NA
WP_148323191.1\|1648838_1649606_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325389.1\|1650690_1651704_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_148325390.1\|1651756_1652239_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_148325391.1\|1652238_1652484_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_148325392.1\|1652484_1652940_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_005537572.1\|1653139_1653781_+	stringent starvation protein A	NA	NA	NA	NA
WP_148325393.1\|1653792_1654254_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.2e-27	56.9
WP_148325394.1\|1654418_1655822_-\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	8.2e-83	37.8
WP_148325395.1\|1656017_1657247_+	ROK family protein	NA	NA	NA	NA
WP_148325396.1\|1657322_1658051_+	dethiobiotin synthase	NA	NA	NA	NA
WP_148324391.1\|1660288_1662403_+	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein	NA	NA	NA	NA
WP_148325397.1\|1665311_1666277_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_148324432.1\|1666551_1667319_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325398.1\|1667408_1668926_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	1.9e-21	29.1
WP_148325399.1\|1669980_1670985_+	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
WP_032995981.1\|1671108_1672107_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_148325400.1\|1672130_1673009_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_148323191.1\|1673094_1673862_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325401.1\|1673929_1674232_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_148325402.1\|1674335_1675781_-	pyruvate kinase	NA	NA	NA	NA
WP_148325403.1\|1676026_1677016_-	ribonucleotide-diphosphate reductase subunit beta	A0A1X9I9V4	Staphylococcus_phage	1.0e-95	52.6
WP_005544317.1\|1677146_1678832_-	ribonucleoside-diphosphate reductase subunit alpha	Q2XUY0	environmental_halophage	1.4e-198	58.5
WP_148325404.1\|1679107_1679914_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_005544313.1\|1679916_1681110_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_148325405.1\|1681119_1681887_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_148325406.1\|1681831_1682044_+	hypothetical protein	NA	NA	NA	NA
WP_148325407.1\|1685398_1686703_-	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_148325408.1\|1686713_1688510_-	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_148325409.1\|1688525_1688792_-	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA
WP_148323191.1\|1689156_1689924_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325410.1\|1690050_1690242_+	hypothetical protein	NA	NA	NA	NA
WP_148325411.1\|1690216_1690594_+	hypothetical protein	NA	NA	NA	NA
WP_005557001.1\|1690714_1690990_-	hydrogenase maturation factor HybG	NA	NA	NA	NA
WP_148325412.1\|1691431_1692862_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.2e-30	37.9
WP_148325413.1\|1692925_1693927_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.6e-48	35.4
WP_005543439.1\|1693938_1694331_-	tautomerase family protein	NA	NA	NA	NA
WP_148325414.1\|1694404_1694995_-	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	7.8e-35	42.8
WP_148325415.1\|1695005_1696553_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_148325416.1\|1697271_1698207_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.4e-40	35.1
WP_148325417.1\|1699070_1699946_+\|protease	protease HtpX	NA	NA	NA	NA
1700051:1700072	attL	NA	NA	NA	NA
WP_148325418.1\|1700207_1701197_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.6e-32	38.0
WP_148325419.1\|1701216_1703607_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_148325420.1\|1703610_1703907_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.7e-12	38.9
WP_148325421.1\|1703958_1704447_+	endopeptidase	NA	NA	NA	NA
WP_148325422.1\|1705134_1706553_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_148325423.1\|1706572_1707700_-	ABC transporter permease	NA	NA	NA	NA
WP_148323354.1\|1711711_1712479_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325860.1\|1712621_1713008_+	AcrR family transcriptional regulator	NA	NA	NA	NA
WP_148325424.1\|1713058_1714249_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_148325425.1\|1714669_1717279_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.9e-17	23.6
WP_148325426.1\|1717351_1718371_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_148325427.1\|1718384_1719227_+	PHP domain-containing protein	NA	NA	NA	NA
WP_148325428.1\|1719636_1722243_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	2.0e-90	34.8
WP_148325429.1\|1723289_1724222_-	universal stress protein UspE	NA	NA	NA	NA
WP_005544709.1\|1724339_1725113_-	FNR family transcription factor	NA	NA	NA	NA
WP_148325430.1\|1725452_1725950_-	non-heme ferritin	NA	NA	NA	NA
WP_005544704.1\|1725966_1726452_-	non-heme ferritin	NA	NA	NA	NA
WP_148325861.1\|1727279_1728428_-	type II secretion system protein GspD	NA	NA	NA	NA
WP_148325431.1\|1728411_1729542_-	hypothetical protein	NA	NA	NA	NA
WP_005566786.1\|1729549_1729855_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_148325432.1\|1729862_1730162_-	hypothetical protein	NA	NA	NA	NA
WP_148325433.1\|1730450_1731878_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_148325434.1\|1731889_1732843_-	EamA family transporter	NA	NA	NA	NA
WP_148325435.1\|1732919_1737410_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_148325436.1\|1737409_1738150_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_148325437.1\|1741811_1743140_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_148325438.1\|1743316_1744198_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_148325439.1\|1744345_1744954_-	lipoprotein HlpB	NA	NA	NA	NA
WP_005538860.1\|1745101_1745389_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_005538859.1\|1745602_1746208_+	DedA family protein	NA	NA	NA	NA
WP_148325440.1\|1748915_1750355_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_148323191.1\|1750992_1751760_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325441.1\|1753924_1754227_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.9e-17	47.9
WP_005556438.1\|1754228_1754522_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_148325442.1\|1754558_1755911_-	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_148325443.1\|1755912_1756605_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_148325444.1\|1756604_1757015_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_148325049.1\|1757193_1757961_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.7e-13	34.2
WP_148325445.1\|1758478_1759480_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LRG1	Mannheimia_phage	8.1e-93	53.6
WP_148323191.1\|1760289_1761057_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325446.1\|1762266_1762971_+	dipeptidase PepE	NA	NA	NA	NA
WP_148325447.1\|1763054_1764512_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_148325448.1\|1764823_1765924_+	nitrate reductase	NA	NA	NA	NA
WP_148325449.1\|1765983_1768464_+	trimethylamine-N-oxide reductase TorA	NA	NA	NA	NA
WP_148325450.1\|1768533_1769313_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
1768472:1768493	attR	NA	NA	NA	NA
WP_148325451.1\|1769539_1770997_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_005574425.1\|1771213_1771468_+	plasmid stabilization protein	NA	NA	NA	NA
WP_019518289.1\|1771464_1771749_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.7e-16	47.9
WP_005574423.1\|1771761_1772547_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_9

2193260 : 2233104

Paenibacillus_phage(36.36%)

transposase,tRNA,integrase

attL 2193169:2193228|attR 2222689:2223580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2193169:2193228	attL	NA	NA	NA	NA
WP_148323354.1\|2193260_2194028_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325714.1\|2194024_2195215_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_005577714.1\|2195180_2196137_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_148325715.1\|2197997_2198645_-	glutaredoxin 2	NA	NA	NA	NA
WP_005541111.1\|2198748_2200224_-	ribonuclease G	NA	NA	NA	NA
WP_148325716.1\|2200362_2201883_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_148325717.1\|2201896_2202862_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_148325718.1\|2202956_2204255_+	adenylosuccinate synthase	W5S5V7	Pithovirus	1.3e-69	35.8
WP_148325719.1\|2204319_2204610_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_148325720.1\|2204632_2205640_-	DnaJ domain-containing protein	A0A1V0SIM1	Klosneuvirus	6.0e-11	55.0
WP_148323191.1\|2205678_2206446_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325721.1\|2206523_2208056_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_148323191.1\|2208401_2209169_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325722.1\|2209281_2210478_-	sugar transporter	NA	NA	NA	NA
WP_148325723.1\|2210479_2211682_-	hypothetical protein	NA	NA	NA	NA
WP_005541091.1\|2211681_2212266_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.9e-27	39.5
WP_148325724.1\|2212274_2212925_-	uridine kinase	A0A1V0SAA3	Catovirus	6.6e-35	38.6
WP_148325725.1\|2213233_2214274_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_148325726.1\|2214435_2215479_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_148325727.1\|2215506_2217564_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_005541082.1\|2217579_2218626_+	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-33	38.5
WP_148325728.1\|2218904_2221016_+	DUF945 domain-containing protein	NA	NA	NA	NA
WP_148323354.1\|2221888_2222656_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325729.1\|2224699_2225506_+	hypothetical protein	NA	NA	NA	NA
2222689:2223580	attR	NA	NA	NA	NA
WP_148325730.1\|2225768_2226776_-	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.5e-73	44.8
WP_148325731.1\|2226933_2228307_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_148325732.1\|2228684_2229803_+	murein transglycosylase A	NA	NA	NA	NA
WP_148325733.1\|2229787_2230573_+\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	9.7e-17	29.3
WP_148325734.1\|2230672_2231692_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_148325735.1\|2231819_2232632_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_079254135.1\|2232903_2233104_+\|transposase	IS3 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection