CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043005	Aggregatibacter actinomycetemcomitans strain PN_696 chromosome, complete genome	1 crisprs	cas3,PD-DExK,cas2,DEDDh,DinG,cas8f,cas5f,cas7f,cas6f,cas1,cas7	0	3	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043005_1

1149251-1149459

Orphan

I-F

Consensus_repeat	Method
TTTTCTAAGCTGCCTATTCGGCAGTGAAG	CRISPRCasFinder
GTTTTCTAAGCTGCCTATTCGGCAGTGAAG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP043005_1

>merge|NZ_CP043005|1|1149251-1149459|CRISPRCasFinder,PILER-CR
TTTGAAGAGTTGCATATTCGGCAGTGAAGCGTGGCGAACGGGGTTAAATTTAACGATAGATTTTCTAAGCTGCCTATTCGGCAGTGAAGTAACGCGCCCACAACTCCCTGCCCGTCCTCGTTTTCTAAGCTGCCTATTCGGCAGTGAAGACAAAGAATGACAAGGGATTTGCGTATCAAGTTTTCTAAGCTGCATATTCGGCAGTGAAG

>NZ_CP043005|1|1|1149251-1149459|CRISPRCasFinder
TTTGAAGAGTTGCATATTCGGCAGTGAAG	CGTGGCGAACGGGGTTAAATTTAACGATAGA
TTTTCTAAGCTGCCTATTCGGCAGTGAAG	TAACGCGCCCACAACTCCCTGCCCGTCCTCG
TTTTCTAAGCTGCCTATTCGGCAGTGAAG	ACAAAGAATGACAAGGGATTTGCGTATCAAG
TTTTCTAAGCTGCATATTCGGCAGTGAAG

>NZ_CP043005|1|1|1149311-1149459|PILER-CR
TTTTCTAAGCTGCCTATTCGGCAGTGAAGT	AACGCGCCCACAACTCCCTGCCCGTCCTCG
TTTTCTAAGCTGCCTATTCGGCAGTGAAGA	CAAAGAATGACAAGGGATTTGCGTATCAAG
TTTTCTAAGCTGCATATTCGGCAGTGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043005.1\|WP_148363355.1\|1141252_1142080_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP043005.1\|WP_148325555.1\|1144291_1145395_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP043005.1\|WP_148325557.1\|1142194_1142515_-\|DUF440-family-protein	unknown	unknown	gnl\|CDD\|179934
NZ_CP043005.1\|WP_148325560.1\|1139197_1140166_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	unknown	unknown	gnl\|CDD\|182659
NZ_CP043005.1\|WP_148325561.1\|1138519_1139143_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NZ_CP043005.1\|WP_148325553.1\|1146284_1147271_-\|catabolite-repressor/activator	unknown	unknown	gnl\|CDD\|236897
NZ_CP043005.1\|WP_148363357.1\|1155582_1156275_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP043005.1\|WP_148325554.1\|1145587_1146301_+\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP043005.1\|WP_005566749.1\|1157155_1157659_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043005.1\|WP_148325556.1\|1142987_1143986_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP043005.1\|WP_148325550.1\|1153164_1154886_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP043005.1\|WP_148325546.1\|1157658_1158312_+\|cobalt-transporter-CbiM	unknown	unknown	gnl\|CDD\|235760
NZ_CP043005.1\|WP_148325551.1\|1151202_1152231_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP043005.1\|WP_005538329.1\|1152468_1153152_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NZ_CP043005.1\|WP_148325866.1\|1137321_1138446_+\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NZ_CP043005.1\|WP_005573686.1\|1152223_1152385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043005.1\|WP_148325552.1\|1149638_1151147_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP043005.1\|WP_148325549.1\|1154894_1155566_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP043005.1\|WP_148363353.1\|1140196_1141168_+\|HTH-type-transcriptional-regulator-CysB	unknown	unknown	gnl\|CDD\|183678
NZ_CP043005.1\|WP_148325547.1\|1156453_1157149_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591

Protein	Function_ID	Function_description	E-value
NZ_CP043005.1\|WP_148363355.1\|1141252_1142080_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP043005.1\|WP_148325555.1\|1144291_1145395_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP043005.1\|WP_148325557.1\|1142194_1142515_-\|DUF440-family-protein	gnl\|CDD\|179934	PRK05094, PRK05094, dsDNA-mimic protein; Reviewed.	6.41366e-52
NZ_CP043005.1\|WP_148325560.1\|1139197_1140166_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	gnl\|CDD\|182659	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB.	5.02582e-166
NZ_CP043005.1\|WP_148325561.1\|1138519_1139143_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	5.98823e-124
NZ_CP043005.1\|WP_148325553.1\|1146284_1147271_-\|catabolite-repressor/activator	gnl\|CDD\|236897	PRK11303, PRK11303, catabolite repressor/activator.	0
NZ_CP043005.1\|WP_148363357.1\|1155582_1156275_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	5.31411e-129
NZ_CP043005.1\|WP_148325554.1\|1145587_1146301_+\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.06387e-99
NZ_CP043005.1\|WP_148325556.1\|1142987_1143986_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP043005.1\|WP_148325550.1\|1153164_1154886_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP043005.1\|WP_148325546.1\|1157658_1158312_+\|cobalt-transporter-CbiM	gnl\|CDD\|235760	PRK06265, PRK06265, cobalt transporter CbiM.	1.39148e-66
NZ_CP043005.1\|WP_148325551.1\|1151202_1152231_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP043005.1\|WP_005538329.1\|1152468_1153152_+\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	3.29369e-98
NZ_CP043005.1\|WP_148325866.1\|1137321_1138446_+\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NZ_CP043005.1\|WP_148325552.1\|1149638_1151147_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP043005.1\|WP_148325549.1\|1154894_1155566_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.41674e-37
NZ_CP043005.1\|WP_148363353.1\|1140196_1141168_+\|HTH-type-transcriptional-regulator-CysB	gnl\|CDD\|183678	PRK12681, cysB, HTH-type transcriptional regulator CysB.	0
NZ_CP043005.1\|WP_148325547.1\|1156453_1157149_+\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	7.39315e-42

>NZ_CP043005.1|WP_148325553.1|1146284_1147271_-|catabolite-repressor/activator
MKLDEIAKLAGVSCTTVSYVVNGKAKQYRVSDSTIEKVQALIKQYDFKPNAMAASLRVGKSKTIGLVIPDFENISYAKIANNLENRLREKGYQLLIACSNDKVENEQDCVKHLLQRQVDALLVSSALPPDTDFYQNASVPIIGFDRRISSPKVVNALTDDEGDTYRLTKELLKIPHQKRILFFGALPDLPTSREREEGFRSALRYRKASAEYLYGDMFRKNEAAQCFAQWLENNPLPTAIFTTSFTLLEGVLLVLLQKLGQVPKDLVIATFGHVEMLELLENRVLCSVQDYDKVSQSLLTLTFDAMSKKHKNRVNTTPLTRSIIKYHC
>NZ_CP043005.1|WP_148325554.1|1145587_1146301_+|DUF218-domain-containing-protein
MKLNLKEKLQAYLTATQIKRIGRYFALFFAGFALLLIVVDQIIGYYVRKDIYYDIDKVPNRPYGLVLGTSKYFSNNTLNLFYYNRLLAAQRLFEARKVDYLLLSGDNRTLQYNEPRTMLQDLKKMGVPQDFIYLDFAGFRTLDSVIRADQVFKAHSLTIISQKFHCERALFIAKFHNIDAICFAADYPQVYSFVRVREFFARLQAVWDLLVEREPHFLGAPEPLPPPVTIPDVNSDI
>NZ_CP043005.1|WP_148325555.1|1144291_1145395_-|homoserine-O-acetyltransferase
MTIKKTTVFTHQPLHLVLGGQLQQIDVAYQTYGELNADKNNAVLICHALTGDAEPYFDKSTNQEGWWQNFMGDGLALDTSRYFFICSNVLGGCKGTTGPSSINPQTNRPYGSEFPAVIVQDIIKVQRALLDFLEIPHLHAIIGGSFGGMQATQWAIDYPDFVSNVVNLCSSLSLSAEAIGFNHVMRQAVMNDPNFNNGDYYDGERPDKGLAIARMLGMLTYRTDVQLSKAFGRATKAEGHLQGDYFQVESYLSYQGQKFLTRFDANSYLHLLRALDLYDPSIGYADLKTALSRIKARYTLVSVDNDQLFKLPELRKSKQLLEQYGVNLNYYEFNSDYGHDAFLVDYAFFENKIRNGLAGGNQDLTKK
>NZ_CP043005.1|WP_148325556.1|1142987_1143986_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKMAGVSTTTVSHVINKTRFVAAETKQQVLQAIKDLNYSPSAVARSLKVNTTKSIGMIVTTSEAPYFAEIIHAVEEHCYRQGYSLFLCNTQNNAEKIKNHLVMLAKKRVDGILVMCSEYLQDPQDLLTAFSSIPMVVMDWGPNAHTNIIQDNSFDGGYLATKHLIENGHKNIGIIAGELNKTTAKTRYEGFVHAMQEAGLAINPNWVMEGFFEPEDGYECMNKILRQETLPTAVFCCNDVMALGAISAIGEKGLCVPDDISIIGYDNIHASRFYSPPLTTIHQSKSRLSVQAVNLLFERINHKSDQRKTIEIHPELVIRKSVKKL
>NZ_CP043005.1|WP_148325557.1|1142194_1142515_-|DUF440-family-protein
MTELTRLDPDKAIDIAYDIFLEIAPENLDPADIMLFNLQFEEHGAVEFVETADNWEEQIGILIDPQEYAEVWIGLVNKQDEMDNIFAKFLISHREEDRQYHIIWKA
>NZ_CP043005.1|WP_148363355.1|1141252_1142080_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSNLQQLIENAFEKRTEITPKTIDVQTRAAVEEVIEGLDSGKYRVAEKIDGEWVTHQWLKKAVLLSFRINDNQLVEGAETKYYDKVPLKFADYTEERFQQEGFRVVPSATVRKGAYIAKNCVLMPSYVNIGAHVGEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIGDNCFIGARSEVVEGVIVEDGCVISMGVFVGQSTKIYDRETGEVYYGRVPAGSVVVSGSLPSKDGKYSLYCAVIVKKVDAKTLGKVGINELLRSIEE
>NZ_CP043005.1|WP_148363353.1|1140196_1141168_+|HTH-type-transcriptional-regulator-CysB
MKFQQLRYVVEIVNQNYNVTEAAHALYTSQPGISKQVRLLENELGLEIFDRHGKHIKGLTPAGKKIVGISRELMVKMQAIRSVSDEYTKPDHGVLRIATTNTQARYMLPHVVERFAKRYPDVSLHIHQGSPMQIYDVLLSGEVDLAITTEAQYLLDGVVLLPCYIWNRSVIVKSDHPLAKCELLTIEELGKYPLITYTFGFTGVSDLDYAFNGAGILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTPADVDLVALKSDHLFRASMTQIAFKHGAFLRNYMYDFINYFSPHLTRENVERAERMHDNNAVKRLFDDVRLQTL
>NZ_CP043005.1|WP_148325560.1|1139197_1140166_+|23S-rRNA-pseudouridine(2605)-synthase-RluB
MKPTTKRTQNRPHFSSNKDKNATAKPRPISSASKTSAAEGEKLQKVLARAGQGSRREIEAIIAENRVSVDGKIATLGDRINVHAGVKVRIDGHLINLTQAQKEVCRVLMYYKPEGELCTRHDPEGRATVFDRLPRLTGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDDAMLNRLKKGVQLEDGPANFKEIKVVGGVGMNQWFDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKTLPRGGWQEMELADVNYLRELVGLPPETETKLGANKTRHKPKFGRIRKAVKRYSELNKRYKK
>NZ_CP043005.1|WP_148325561.1|1138519_1139143_+|threonylcarbamoyl-AMP-synthase
MSQFFYIHPENPQVRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELSTYSLVTNSAYRLIKNNTPGRYTFILTATKELPRRLMTSKRKTIGIRVPDNQIALDLLKALGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHKVDLIIHGGYLGQEPTTVVDLTGDTPVILREGSGAVTPFI
>NZ_CP043005.1|WP_148325866.1|1137321_1138446_+|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MERLAELREQIDSLDQELLQLLAKRQQVVYKVGEVKQQHGLPIYAPQREAEMLQRKREAAEQMGLSPNLIEDVLRRIMRESYVSENQFGFKTVNPQIRKIVIVGGRGKLGSLFCRYLQGSDYQVKCLERDGWARADQILQHADVVIVSVPIANTLAVIERIKPYLTENMLLVDFTSVKRTPLEKMLEVHQGAVVGLHSMFGPDVVSMAKQVVVCCDGRFSERYQWLLQQIQIWGAKIYQVDAAEHDHHMTYIQALRHFSTFVYGLYLSQQTVDLEKLLALSSPIYRLELAMVGRLFAQDAALYADIIGHKPENLAVIEHFKDSYETGLAFFKHHDRQGFIEQFNQIRDWFGGYSEQFLQESRQLLQQANDSRNV
>NZ_CP043005.1|WP_148325552.1|1149638_1151147_-|lysine--tRNA-ligase
MSEQEVKELDLNGEMLVRREKLAALRAKGNAFPNQFRRDALAQDLHDKYDAEEGEALKEKHIEVAVAGRIMTRRAMGKATFVTIQDMSGKIQLYVARDNLPEGVYKDDVGHWDLGDIVGIKGSLFKTKTDELTVKATEVQLLTKALRSLPDKFHGLTDQEVRYRQRYLDLISNEESRRTFIIRSKVVAGIREYFLSKGFMEVETPMLQVIPGGATARPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMLEYYQAYADYHDLMDNTEELLRKLAIDILGTTIVKYGDLEFDFGKPFERITLHDATIKYGAEKGIVKEDLYDFNRAKATAERLGIEVQKSWGLGSIVNAIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQNDRFDAQVTAKEAGDDEAMFKDEDFVIALEHGLPPTAGEGLGIDRLAMLYANAPSIRDVILFPAMRQK
>NZ_CP043005.1|WP_148325551.1|1151202_1152231_-|peptide-chain-release-factor-2
MFDFDAKVERLEEVNAELEQPDVWNDAEKAQALGKERVSLELVVNTIKNLEQGLEDVDGLLELAVEAGDEDTFNEAIAELNELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIAVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKAGL
>NZ_CP043005.1|WP_005573686.1|1152223_1152385_-|hypothetical-protein
MEFRSLYPIPAKSLIIPHLIYLFTTFIIMFEINPIKNKIADLTDRTSVLRGYL
>NZ_CP043005.1|WP_005538329.1|1152468_1153152_+|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKKIITTLSLLAISMSVTANDAALKSKLEKLGVKDIDIQTSPIKGLKTVVSDQGIFYASEDGEYLLQGKIYKLTDKGISNVTNKVLLDKLNALKNEMIVYPAKNEKHVITVFMDITCHYCHLLHQQVKEYNDLGITVRYLAFPRAGMESQTAGQMEAIFTAKDPTFALNEAEKGNLPKELKTPNVVRKHYLLGAQFGVNGTPTIITSEGEVIGGYLKPADLLAALEG
>NZ_CP043005.1|WP_148325550.1|1153164_1154886_+|single-stranded-DNA-specific-exonuclease-RecJ
MQKQILRREVPAGNKLCDDPLLDRLYRSRHIKNACQLDRTLAAIHNPNLMSGLDDAVALLLEAYEKQQKIVIVGDFDADGATSTALAVLALRQLGFVNVAYLVPNRFEQGYGLSVAVAQEALALDVELLITVDNGVSSHEGVAFLKERGVNVIVTDHHLPPESLPSADAIINPNLAHCGFPSKNLAGVGVAFYLMLALRAKFRELGMFDAKNQPNFTELLDLVALGTVSDVVPLDQNNRILVYQGLARIKAQRCRFGIRALAEVAKRDLAGFSASDLGFSIAPRLNAAGRLDNMSVGVELLLAEDMENARALALELDSLNQARKEIEQGMKLEALKICQNLTALENQLPHSIVLYQADWHQGVLGIVASRIKDQFHRPVIAFAQEQDGILKGSVRSIPGLHIRDALERVYSQHPDLILKFGGHAMAAGLSINENYFADFQRIFNETVSELLAQEQLQGSIWTDGELSVNELNLNTAERLKSAGPWGQAFPEPLFDGEFKILQQRLVGEKHLKMMVESKLGGPLMDAIAFNVDTRYYPDLSIKTAKLVYKLDINEFRGNRDIQLLIDYIEPLEN
>NZ_CP043005.1|WP_148325549.1|1154894_1155566_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MLRVGLFIMLLCVGGFAAAQAGDESVAPDPAVLLDEESPEFEDGKDYFSYEYPIAMPARNDHRVIIQFFFDYDCRVCSSAQDILELYTQINRDRVVLEEFPVATNKARFTAGVFFSLQALNAEHLSSALLFETSERQRYIKLSRIENLVYWLQKQGIERDSFLEMYHSDQIHQKVNDAVLMTEEYGVFTFPYVIINGKYVLTASTLYNDDYALAVLDFLVNRK
>NZ_CP043005.1|WP_148363357.1|1155582_1156275_+|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MKIGIVGAMAQEVEILVGLMSDKNVTKLASGTIYEGKIHGKNIALLQSGIGKVAAAMGTTALLQLAKPNLVINTGSAGGVAEGLHVGDVIVSTETQYHDADVTAFGYAKGQLPTCPVTFVSDARLVKLAERTAKQLGQRVKRGLICSGDSFIQGGERLAQIKQDFPNVIAVEMEATAIAQVCHAFNVPFVVVRAISDAGDGKANMSFEEFLPLAAKQSSDMVVAMLAELN
>NZ_CP043005.1|WP_148325547.1|1156453_1157149_+|DUF4198-domain-containing-protein
MKFKKTTAILTALFAASVANAHNVWLEPVKEANSTGQYVVKFGHEQTEIYPEHKLKTVKLLDNNGNLTNATHQFKQGEAYLNAENASQVFIRFDNGVWSKLPSGKYVEKTKQQEPTAEFAVNPVKFGKAILHWDAQALKAHGMEYELVPQEKAQAGKLLPILVLHNGKPVKDIKVGLGEDAPFNLTNEKGIAEFTPQKGNNKVWAEFSENVKGNPDYDRRSVEYMLTFEAE
>NZ_CP043005.1|WP_005566749.1|1157155_1157659_+|hypothetical-protein
MKKTPYFLTALLGLCVAPHAWTHALYVFAQYDGQTVTGKSYYSDMTPAVETYVEVLRQGENQPLLTGKTDNGGYFHLPLKADPNMALKVVVEGEEGHRATVVADRITANAGATTRAGDESLLLLRGDIAQLRDKIYLHDILGGIGYIVGIAGIAAWLKARKLRKGHQ
>NZ_CP043005.1|WP_148325546.1|1157658_1158312_+|cobalt-transporter-CbiM
MHLSEGVLHTPVLLAGVALTVVGVAVGLRRLDNERLPLTALFAAAFFVAGTIHVPVGIGSVHLILNGMARLFLGWAVFPAFLIALLLQVLFFSFGGFAVLGVNLCVMALPAVAAHYLLRGYLHPDMGKMAKLFAGVGVGVIGVGGAGALASLVLELDGGKHYQDLIVLLLLSHLPVFVLDSIISYGVISLLGKMYPVALQPVALSQKTMSYSKRCAQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043005_1	1.1\|1149280\|31\|NZ_CP043005\|CRISPRCasFinder	1149280-1149310	31	GQ866233	Aggregatibacter phage S1249, complete sequence	28212-28242	2	0.935
NZ_CP043005_1	1.1\|1149280\|31\|NZ_CP043005\|CRISPRCasFinder	1149280-1149310	31	AJ560763	Bacteriophage Aaphi23 complete genome	14851-14881	2	0.935
NZ_CP043005_1	1.1\|1149280\|31\|NZ_CP043005\|CRISPRCasFinder	1149280-1149310	31	NC_004827	Bacteriophage Aaphi23, complete genome	14851-14881	2	0.935
NZ_CP043005_1	1.4\|1149341\|30\|NZ_CP043005\|PILER-CR	1149341-1149370	30	MH744418	Streptomyces phage JustBecause, complete genome	79391-79420	7	0.767
NZ_CP043005_1	1.4\|1149341\|30\|NZ_CP043005\|PILER-CR	1149341-1149370	30	MT310898	Streptomyces phage Kela, complete genome	79271-79300	7	0.767
NZ_CP043005_1	1.2\|1149340\|31\|NZ_CP043005\|CRISPRCasFinder	1149340-1149370	31	MH744418	Streptomyces phage JustBecause, complete genome	79390-79420	8	0.742
NZ_CP043005_1	1.2\|1149340\|31\|NZ_CP043005\|CRISPRCasFinder	1149340-1149370	31	MT310898	Streptomyces phage Kela, complete genome	79270-79300	8	0.742

1. spacer 1.1|1149280|31|NZ_CP043005|CRISPRCasFinder matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 2, identity: 0.935

cgtggcgaacggggttaaatttaacgataga	CRISPR spacer
cgtagcgaacggggttaaatttaacgacaga	Protospacer
***.***********************.***

2. spacer 1.1|1149280|31|NZ_CP043005|CRISPRCasFinder matches to AJ560763 (Bacteriophage Aaphi23 complete genome) position: , mismatch: 2, identity: 0.935

cgtggcgaacggggttaaatttaacgataga	CRISPR spacer
cgtagcgaacggggttaaatttaacgacaga	Protospacer
***.***********************.***

3. spacer 1.1|1149280|31|NZ_CP043005|CRISPRCasFinder matches to NC_004827 (Bacteriophage Aaphi23, complete genome) position: , mismatch: 2, identity: 0.935

cgtggcgaacggggttaaatttaacgataga	CRISPR spacer
cgtagcgaacggggttaaatttaacgacaga	Protospacer
***.***********************.***

4. spacer 1.4|1149341|30|NZ_CP043005|PILER-CR matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 7, identity: 0.767

taacgcgcccacaactccctgcccgtcctc	CRISPR spacer
gacaacgcccacaactccctgccggaccgc	Protospacer
 *  .****************** * ** *

5. spacer 1.4|1149341|30|NZ_CP043005|PILER-CR matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 7, identity: 0.767

taacgcgcccacaactccctgcccgtcctc	CRISPR spacer
gacaacgcccacaactccctgccggaccgc	Protospacer
 *  .****************** * ** *

6. spacer 1.2|1149340|31|NZ_CP043005|CRISPRCasFinder matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.742

taacgcgcccacaactccctgcccgtcctcg	CRISPR spacer
gacaacgcccacaactccctgccggaccgcc	Protospacer
 *  .****************** * ** *

7. spacer 1.2|1149340|31|NZ_CP043005|CRISPRCasFinder matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.742

taacgcgcccacaactccctgcccgtcctcg	CRISPR spacer
gacaacgcccacaactccctgccggaccgcc	Protospacer
 *  .****************** * ** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44832 : 73199

Paenibacillus_phage(50.0%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148363040.1\|44832_45600_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_005543732.1\|45689_46334_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.4e-53	53.1
WP_148363041.1\|46477_48742_-	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_148363042.1\|49595_50363_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148363043.1\|50820_51909_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_148363044.1\|52397_53435_+	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_148323199.1\|53488_55105_+	hypothetical protein	NA	NA	NA	NA
WP_148363045.1\|55280_57908_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_148363046.1\|57918_59658_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	2.8e-40	32.9
WP_148323203.1\|59845_60181_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148325801.1\|61242_62304_-	hypothetical protein	NA	NA	NA	NA
WP_148363047.1\|64560_65328_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.4e-13	39.2
WP_148363048.1\|66685_67144_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-27	48.0
WP_148323207.1\|67182_67683_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_148363049.1\|67839_69081_+	HAAAP family serine/threonine permease	NA	NA	NA	NA
WP_148323211.1\|69173_70538_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_148363050.1\|70717_71767_-	L-asparaginase 2	NA	NA	NA	NA
WP_148323215.1\|72104_73199_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA

DBSCAN-SWA_2

248882 : 314177

Paenibacillus_phage(33.33%)

tRNA,integrase,transposase

attL 284949:285008|attR 320147:321045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148363639.1\|248882_249866_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_148323424.1\|250182_251067_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_148323426.1\|251641_253078_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_148323428.1\|253074_253347_-	DUF997 family protein	NA	NA	NA	NA
WP_148363640.1\|253370_254759_-	DUF560 domain-containing protein	NA	NA	NA	NA
WP_148363093.1\|254877_255642_-	transferrin-binding protein-like solute binding protein	NA	NA	NA	NA
WP_148363094.1\|255704_256472_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148323432.1\|256827_258174_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_148363095.1\|258216_258663_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_005577222.1\|258786_259263_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_148323438.1\|259361_260363_-	o-succinylbenzoate synthase	NA	NA	NA	NA
WP_005540730.1\|260343_260673_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_148363096.1\|260654_261074_-	nucleotidyltransferase	NA	NA	NA	NA
WP_148323442.1\|261113_261971_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_005577219.1\|262081_262849_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_005540737.1\|263021_263465_+	hypothetical protein	NA	NA	NA	NA
WP_148323444.1\|263538_264906_-	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_148323446.1\|264925_265360_-	DUF2489 domain-containing protein	NA	NA	NA	NA
WP_148323447.1\|265372_265933_-	Der GTPase-activating protein YihI	NA	NA	NA	NA
WP_148363097.1\|266455_267478_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_148363098.1\|267613_268273_-\|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA	NA	NA	NA
WP_148323450.1\|268653_269343_+	nicotinamide riboside transporter PnuC	U5J9C5	Bacillus_phage	9.7e-37	36.8
WP_148323451.1\|269418_270126_-	methyltransferase	NA	NA	NA	NA
WP_148363099.1\|270215_271547_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	2.6e-46	31.7
WP_148323453.1\|273162_273399_-	hypothetical protein	NA	NA	NA	NA
WP_005566621.1\|274951_275236_+	hypothetical protein	NA	NA	NA	NA
WP_148329247.1\|277434_278388_+	transaldolase	A0A1D7SEQ4	Cyanophage	5.3e-09	31.4
WP_148323455.1\|278519_280517_+	transketolase	NA	NA	NA	NA
WP_148323457.1\|280587_280977_-	RidA family protein	NA	NA	NA	NA
WP_148363100.1\|281053_281512_-	recombination regulator RecX	NA	NA	NA	NA
WP_148363101.1\|281593_282649_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.4e-114	63.3
WP_148363102.1\|282793_284719_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.2e-72	31.5
284949:285008	attL	NA	NA	NA	NA
WP_148363065.1\|285045_285813_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323467.1\|288834_289065_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_148363103.1\|290210_290579_+	hypothetical protein	NA	NA	NA	NA
WP_148336955.1\|290672_291035_-	hypothetical protein	NA	NA	NA	NA
WP_148336953.1\|291037_291475_-	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	5.0e-31	47.9
WP_148363641.1\|291928_292114_+	hypothetical protein	NA	NA	NA	NA
WP_148363104.1\|292711_293212_+\|integrase	integrase	NA	NA	NA	NA
WP_148363105.1\|293261_293525_-	hypothetical protein	NA	NA	NA	NA
WP_148323473.1\|294751_295258_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_148363106.1\|295470_295956_-	DedA family protein	NA	NA	NA	NA
WP_148323477.1\|295958_296564_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_148323479.1\|296563_297166_-	beta-phosphoglucomutase family hydrolase	NA	NA	NA	NA
WP_148323481.1\|297293_297674_+	PRD domain-containing protein	NA	NA	NA	NA
WP_148363107.1\|298189_300205_-	DNA helicase Rep	A7KV33	Bacillus_phage	3.9e-118	38.4
WP_148323485.1\|300214_300445_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_005548103.1\|300548_301112_-	porin family protein	NA	NA	NA	NA
WP_148363108.1\|301328_304130_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	7.6e-80	34.5
WP_148323488.1\|304144_304246_+	oxygenase	NA	NA	NA	NA
WP_148363065.1\|304587_305355_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148323490.1\|305523_307944_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	3.5e-222	49.0
WP_148329303.1\|308569_309409_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_148363042.1\|309453_310221_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148329228.1\|310345_310960_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.7e-21	34.6
WP_148323494.1\|310973_311183_+	ferredoxin	NA	NA	NA	NA
WP_148323496.1\|311324_312233_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_148325807.1\|312282_312543_+	hypothetical protein	NA	NA	NA	NA
WP_148363065.1\|313409_314177_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
320147:321045	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1272910 : 1355806

Paenibacillus_phage(28.57%)

tRNA,integrase,protease,transposase

attL 1284987:1285046|attR 1355779:1356671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148325862.1\|1272910_1274854_+\|protease	ATP-dependent zinc metalloprotease FtsH	M4QMW8	Micromonas_pusilla_virus	1.7e-115	42.1
WP_148325465.1\|1275612_1276671_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.3e-27	31.8
WP_148363398.1\|1279478_1280480_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_148325462.1\|1280853_1282104_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_148363400.1\|1282100_1284083_+	histidine kinase	NA	NA	NA	NA
1284987:1285046	attL	NA	NA	NA	NA
WP_148363065.1\|1285018_1285786_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148363402.1\|1286261_1287101_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	2.2e-38	37.5
WP_148325460.1\|1287109_1287892_-	DUF2310 family Zn-ribbon-containing protein	NA	NA	NA	NA
WP_005551602.1\|1287998_1288313_+	YqcC family protein	NA	NA	NA	NA
WP_148363403.1\|1288309_1289023_+\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
WP_148325458.1\|1289077_1289242_+	YoaH family protein	NA	NA	NA	NA
WP_148325457.1\|1289431_1289641_+	cold shock domain-containing protein CspD	A0A1J0GVA5	Vibrio_phage	4.2e-12	53.1
WP_148325456.1\|1289706_1290153_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_148325455.1\|1290299_1292084_+	AAA family ATPase	NA	NA	NA	NA
WP_005548745.1\|1292225_1292756_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_005574416.1\|1293180_1293537_+	hypothetical protein	NA	NA	NA	NA
WP_148325454.1\|1293607_1297273_+	exodeoxyribonuclease V subunit beta	NA	NA	NA	NA
WP_148325453.1\|1297272_1299249_+	exodeoxyribonuclease V subunit alpha	A0A1P8DII4	Virus_Rctr197k	2.9e-17	24.6
WP_148363405.1\|1299261_1299858_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_005546126.1\|1300101_1300530_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_005542159.1\|1300546_1300939_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_148363406.1\|1301101_1301887_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_019518289.1\|1301899_1302184_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.7e-16	47.9
WP_005574425.1\|1302180_1302435_-	plasmid stabilization protein	NA	NA	NA	NA
WP_148325451.1\|1302651_1304109_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_148325450.1\|1304335_1305115_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_148363408.1\|1305185_1307753_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_148363410.1\|1307812_1308913_-	nitrate reductase	NA	NA	NA	NA
WP_148363412.1\|1309226_1310684_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_148325446.1\|1310767_1311472_-	dipeptidase PepE	NA	NA	NA	NA
WP_148363042.1\|1312681_1313449_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148363651.1\|1314258_1315260_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LRG1	Mannheimia_phage	2.8e-93	53.9
WP_148363042.1\|1315777_1316545_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325860.1\|1316687_1317074_+	AcrR family transcriptional regulator	NA	NA	NA	NA
WP_148363414.1\|1317124_1318315_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_148363416.1\|1318735_1321345_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.0e-17	23.4
WP_148363418.1\|1321417_1322437_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_148363420.1\|1322450_1323287_+	PHP domain-containing protein	NA	NA	NA	NA
WP_148363422.1\|1323696_1326303_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	2.0e-90	34.8
WP_148363424.1\|1327349_1328282_-	universal stress protein UspE	NA	NA	NA	NA
WP_005544709.1\|1328399_1329173_-	FNR family transcription factor	NA	NA	NA	NA
WP_148327535.1\|1329512_1330010_-	non-heme ferritin	NA	NA	NA	NA
WP_005544704.1\|1330026_1330512_-	non-heme ferritin	NA	NA	NA	NA
WP_148325861.1\|1331338_1332487_-	type II secretion system protein GspD	NA	NA	NA	NA
WP_148363426.1\|1332470_1333601_-	hypothetical protein	NA	NA	NA	NA
WP_005566786.1\|1333608_1333914_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_148325432.1\|1333921_1334221_-	hypothetical protein	NA	NA	NA	NA
WP_148363429.1\|1334509_1335937_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_148325434.1\|1335948_1336902_-	EamA family transporter	NA	NA	NA	NA
WP_148325435.1\|1336978_1341469_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_148325436.1\|1341468_1342209_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_148325437.1\|1345870_1347199_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_148325438.1\|1347375_1348257_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_148325439.1\|1348404_1349013_-	lipoprotein HlpB	NA	NA	NA	NA
WP_005538860.1\|1349160_1349448_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_005538859.1\|1349661_1350267_+	DedA family protein	NA	NA	NA	NA
WP_148363431.1\|1350385_1352851_-	glycogen/starch/alpha-glucan family phosphorylase	A0A140XAG6	Dickeya_phage	2.8e-17	50.6
WP_148325440.1\|1352973_1354413_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_148363065.1\|1355038_1355806_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
1355779:1356671	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1359959 : 1421453

Paenibacillus_phage(29.41%)

tRNA,protease,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148325443.1\|1359959_1360652_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_148325444.1\|1360651_1361062_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_148323191.1\|1361241_1362009_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148363437.1\|1363281_1366026_+	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	1.9e-19	28.6
WP_148363439.1\|1366027_1367155_+	ABC transporter permease	NA	NA	NA	NA
WP_148325422.1\|1367174_1368593_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_148325421.1\|1369280_1369769_-	endopeptidase	NA	NA	NA	NA
WP_148325420.1\|1369820_1370117_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.7e-12	38.9
WP_148363441.1\|1370120_1372511_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_148363442.1\|1372530_1373520_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.6e-32	36.8
WP_148325417.1\|1373781_1374657_-\|protease	protease HtpX	NA	NA	NA	NA
WP_148325416.1\|1375520_1376456_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.4e-40	35.1
WP_148325415.1\|1377174_1378722_+	anthranilate synthase component 1	NA	NA	NA	NA
WP_148325414.1\|1378732_1379323_+	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	7.8e-35	42.8
WP_148363443.1\|1379396_1379789_+	tautomerase family protein	NA	NA	NA	NA
WP_148328922.1\|1379800_1380802_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.2e-48	35.7
WP_148325412.1\|1380865_1382296_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.2e-30	37.9
WP_005557001.1\|1382737_1383013_+	hydrogenase maturation factor HybG	NA	NA	NA	NA
WP_148363444.1\|1383133_1383511_-	hypothetical protein	NA	NA	NA	NA
WP_148325410.1\|1383485_1383677_-	hypothetical protein	NA	NA	NA	NA
WP_148363445.1\|1383803_1384571_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148363446.1\|1384935_1385202_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA
WP_148363447.1\|1385217_1387014_+	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA
WP_148363448.1\|1387024_1388329_+	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA
WP_148325406.1\|1391685_1391898_-	hypothetical protein	NA	NA	NA	NA
WP_148363449.1\|1391842_1392607_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_005544313.1\|1392616_1393810_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_148327521.1\|1393812_1394619_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_148363450.1\|1394894_1396580_+	ribonucleoside-diphosphate reductase subunit alpha	Q2XUY0	environmental_halophage	2.4e-198	58.5
WP_148325403.1\|1396710_1397700_+	ribonucleotide-diphosphate reductase subunit beta	A0A1X9I9V4	Staphylococcus_phage	1.0e-95	52.6
WP_148325402.1\|1397945_1399391_+	pyruvate kinase	NA	NA	NA	NA
WP_148325401.1\|1399494_1399797_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_148363451.1\|1399864_1400632_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.2e-13	34.2
WP_005572053.1\|1400717_1401596_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_148363452.1\|1401619_1402618_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_148325399.1\|1402741_1403746_-	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
WP_148363453.1\|1404801_1406319_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	1.9e-21	29.1
WP_148363065.1\|1406408_1407176_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325396.1\|1412240_1412969_-	dethiobiotin synthase	NA	NA	NA	NA
WP_148325395.1\|1413044_1414274_-	ROK family protein	NA	NA	NA	NA
WP_148325394.1\|1414469_1415873_+\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	8.2e-83	37.8
WP_148325393.1\|1416037_1416499_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.2e-27	56.9
WP_005537572.1\|1416510_1417152_-	stringent starvation protein A	NA	NA	NA	NA
WP_148325392.1\|1417351_1417807_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_148325391.1\|1417807_1418053_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_148327593.1\|1418052_1418535_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_148325389.1\|1418587_1419601_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_148323354.1\|1420685_1421453_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2

DBSCAN-SWA_5

1930620 : 1984373

Haemophilus_phage(22.73%)

tRNA,integrase,transposase,plate

attL 1936643:1936662|attR 1978840:1978859

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148363382.1\|1930620_1931388_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148326971.1\|1931498_1931888_+	DoxX family membrane protein	NA	NA	NA	NA
WP_148363569.1\|1932326_1935218_-	ribonuclease E	NA	NA	NA	NA
WP_148363570.1\|1935268_1935574_+	hypothetical protein	NA	NA	NA	NA
WP_148324867.1\|1935683_1936643_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
1936643:1936662	attL	NA	NA	NA	NA
WP_148324864.1\|1936842_1937166_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.9e-20	52.8
WP_148324861.1\|1937265_1938261_-	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	3.0e-63	43.3
WP_148324859.1\|1938284_1939394_-	methionine biosynthesis PLP-dependent protein	A0A1V0SL56	Klosneuvirus	8.1e-17	25.6
WP_148326974.1\|1939894_1940101_-	hypothetical protein	NA	NA	NA	NA
WP_148324857.1\|1940400_1940643_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_148325840.1\|1943392_1943608_-	hypothetical protein	NA	NA	NA	NA
WP_148324855.1\|1943920_1944721_-	inositol-1-monophosphatase	NA	NA	NA	NA
WP_148324853.1\|1944871_1945597_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_005542255.1\|1945674_1946148_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
WP_148324851.1\|1946201_1947416_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
WP_005542252.1\|1947475_1947859_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	9.1e-53	78.2
WP_148363065.1\|1947948_1948716_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_005542247.1\|1948877_1949201_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	6.8e-25	47.7
WP_148324850.1\|1949212_1949734_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA
WP_148333806.1\|1949754_1951614_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	4.7e-110	40.6
WP_005542241.1\|1951625_1951967_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005703940.1\|1951966_1952161_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_148324845.1\|1952294_1954358_-\|tRNA	methionine--tRNA ligase	A0A1V0S905	Catovirus	2.1e-26	24.2
WP_148324843.1\|1954531_1955644_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_148324842.1\|1955924_1956122_+	hypothetical protein	NA	NA	NA	NA
WP_148327395.1\|1960435_1960834_+	hypothetical protein	NA	NA	NA	NA
WP_148325832.1\|1961066_1961594_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_148324382.1\|1961917_1962769_-	thymidylate synthase	H9EB68	Vibrio_phage	4.0e-133	77.4
WP_148324379.1\|1962765_1963563_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_148324376.1\|1963571_1964369_-	TSUP family transporter	NA	NA	NA	NA
WP_148324373.1\|1964371_1964971_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_148324370.1\|1965190_1965610_+	D-ribose pyranase	NA	NA	NA	NA
WP_148363571.1\|1968655_1969555_-	phage repressor protein/antirepressor Ant	D0UIK6	Aggregatibacter_phage	1.9e-101	66.0
WP_148324361.1\|1969861_1971013_-	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.4e-35	28.7
WP_148324358.1\|1971266_1971449_+	addiction module toxin, HicA family	A0A2H4JDU5	uncultured_Caudovirales_phage	1.2e-05	44.1
WP_148324355.1\|1971500_1971920_+	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	1.1e-27	44.6
WP_005545972.1\|1971945_1972305_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	5.2e-66	100.0
WP_148324351.1\|1972301_1972946_-\|plate	baseplate protein	D0UIH7	Aggregatibacter_phage	2.0e-116	97.2
WP_060828809.1\|1973180_1973363_+	hypothetical protein	Q776W8	Haemophilus_phage	5.0e-25	98.3
WP_148324348.1\|1973396_1973822_+	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	6.2e-26	78.7
WP_015971210.1\|1974130_1974445_+	hypothetical protein	Q7Y5X5	Haemophilus_phage	4.2e-56	100.0
WP_099308953.1\|1974460_1974808_+	helix-turn-helix domain-containing protein	Q7Y5X6	Haemophilus_phage	1.9e-57	99.1
WP_148363657.1\|1974696_1975728_+\|integrase	tyrosine-type recombinase/integrase	Q7Y5X7	Haemophilus_phage	4.5e-195	97.7
WP_005558509.1\|1975905_1977351_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_148324345.1\|1978037_1978826_+	glycosyl transferase	NA	NA	NA	NA
WP_148363572.1\|1978938_1980315_+	argininosuccinate lyase	NA	NA	NA	NA
1978840:1978859	attR	NA	NA	NA	NA
WP_148363573.1\|1980510_1981860_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_005547635.1\|1982350_1983805_+	catalase	A0A2K9L572	Tupanvirus	1.0e-96	38.4
WP_148325830.1\|1984307_1984373_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2072353 : 2127607

Paenibacillus_phage(33.33%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148363589.1\|2072353_2073670_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-96	54.3
WP_148363065.1\|2073775_2074543_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.9e-13	34.2
WP_148325629.1\|2076969_2078310_-	AAA family ATPase	G3MBE0	Bacillus_virus	1.7e-82	42.5
WP_148325630.1\|2078322_2078940_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_148363590.1\|2079032_2081777_-	cell division protein FtsK	A0A218M9A2	Mycobacterium_phage	1.0e-84	48.4
WP_148325632.1\|2081780_2082260_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_148325633.1\|2082985_2083990_-	biotin synthase BioB	NA	NA	NA	NA
WP_148328537.1\|2084034_2084682_-	thiamine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-25	37.4
WP_148327173.1\|2084665_2086294_-	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_148325636.1\|2086302_2087307_-	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_148363591.1\|2089676_2090543_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_148325638.1\|2092224_2092887_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	4.2e-29	49.4
WP_014702540.1\|2092972_2093302_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_148327175.1\|2093398_2094280_+	iron ABC transporter substrate-binding protein AfeA	NA	NA	NA	NA
WP_148363592.1\|2094279_2095170_+	ironABC transporter ATP-binding protein AfeB	G9BWD6	Planktothrix_phage	9.0e-11	25.5
WP_148363593.1\|2095169_2096027_+	iron ABC transporter permease subunit AfeC	NA	NA	NA	NA
WP_005540335.1\|2096023_2096872_+	iron ABC transporter permease subunit AfeD	NA	NA	NA	NA
WP_005540337.1\|2096846_2097119_-	acylphosphatase	NA	NA	NA	NA
WP_148325641.1\|2097263_2097944_+	DUF2057 domain-containing protein	NA	NA	NA	NA
WP_148363594.1\|2098006_2098465_+	methylglyoxal synthase	NA	NA	NA	NA
WP_148363595.1\|2098464_2098938_+	YccF domain-containing protein	NA	NA	NA	NA
WP_148363596.1\|2098946_2101088_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_148327181.1\|2101084_2101588_-	endonuclease SmrB	NA	NA	NA	NA
WP_148363597.1\|2101650_2102601_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_148327183.1\|2102767_2103712_-	transketolase family protein	NA	NA	NA	NA
WP_148325647.1\|2103701_2104526_-	transketolase	NA	NA	NA	NA
WP_148363598.1\|2104535_2105891_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_148325649.1\|2105907_2106177_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_005560918.1\|2106249_2106555_+	hypothetical protein	NA	NA	NA	NA
WP_148325650.1\|2106735_2107311_-	hypothetical protein	NA	NA	NA	NA
WP_148325870.1\|2107586_2107862_-	hypothetical protein	Q2NPA7	Xanthomonas_phage	3.2e-07	36.6
WP_148363660.1\|2108857_2109478_-	hypothetical protein	NA	NA	NA	NA
WP_148363042.1\|2109546_2110314_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325651.1\|2110417_2110672_-	hypothetical protein	NA	NA	NA	NA
WP_148363599.1\|2110690_2110933_-	hypothetical protein	NA	NA	NA	NA
WP_148363600.1\|2112448_2113609_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.8e-12	38.4
WP_148363601.1\|2113503_2114103_-	hypothetical protein	NA	NA	NA	NA
WP_148363602.1\|2114914_2115680_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.4e-14	35.1
WP_148325653.1\|2115789_2118147_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_148363603.1\|2118295_2119063_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.5e-14	35.1
WP_148325655.1\|2119154_2120171_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA
WP_148363604.1\|2120336_2126108_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA
WP_148325657.1\|2126158_2127607_-\|protease	metalloprotease TldD	NA	NA	NA	NA

DBSCAN-SWA_7

2163466 : 2215887

Paenibacillus_phage(25.0%)