CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP043008	Citrobacter portucalensis strain WCHCP085039 plasmid pKPC2_085039, complete sequence	0 crisprs	NA	0
NZ_CP043009	Citrobacter portucalensis strain WCHCP085039 chromosome, complete genome	3 crisprs	RT,cas3,WYL,csa3,DEDDh,DinG	6
NZ_CP043007	Citrobacter portucalensis strain WCHCP085039 plasmid p1_085039, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043009_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043009_1

226914-227037

Orphan

Consensus_repeat	Method
TGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043009_1

>merge|NZ_CP043009|1|226914-227037|CRISPRCasFinder
TGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGCCATCAGGCAAAACATCACGCTATAACAGACACTGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGC

>NZ_CP043009|1|1|226914-227037|CRISPRCasFinder
TGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGC	CATCAGGCAAAACATCACGCTATAACAGACAC
TGCCGGATGCGGCGCAAGCGCCTTATCCGGCCTACAGGCGAAGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043009.1\|WP_003827403.1\|221852_222422_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|182401
NZ_CP043009.1\|WP_003827420.1\|233517_234720_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226350
NZ_CP043009.1\|WP_003827412.1\|224947_226642_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	unknown	unknown	gnl\|CDD\|183198
NZ_CP043009.1\|WP_003024315.1\|230443_231346_+\|dipeptide-ABC-transporter-permease-DppC	unknown	unknown	gnl\|CDD\|182833
NZ_CP043009.1\|WP_148361338.1\|215386_216325_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP043009.1\|WP_003827423.1\|234755_236054_-\|transporter	unknown	unknown	gnl\|CDD\|273283
NZ_CP043009.1\|WP_003827418.1\|232336_233341_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	unknown	unknown	gnl\|CDD\|236898
NZ_CP043009.1\|WP_148361343.1\|236171_237368_-\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|168478
NZ_CP043009.1\|WP_148361344.1\|237794_237902_+\|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein	unknown	unknown	gnl\|CDD\|372829
NZ_CP043009.1\|WP_003827401.1\|221422_221863_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NZ_CP043009.1\|WP_148361342.1\|222581_223283_+\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|227858
NZ_CP043009.1\|WP_122973901.1\|229248_229452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043009.1\|WP_003827415.1\|229414_230434_+\|dipeptide-ABC-transporter-permease-DppB	unknown	unknown	gnl\|CDD\|182834
NZ_CP043009.1\|WP_003827397.1\|218298_218961_-\|OmpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|182507
NZ_CP043009.1\|WP_063941883.1\|223534_224737_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273323
NZ_CP043009.1\|WP_003024317.1\|231356_232340_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182906
NZ_CP043009.1\|WP_148361341.1\|219120_221454_+\|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase	unknown	unknown	gnl\|CDD\|273110
NZ_CP043009.1\|WP_148361339.1\|216328_217078_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|366542
NZ_CP043009.1\|WP_148361340.1\|217177_218194_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380506
NZ_CP043009.1\|WP_003827414.1\|227640_229248_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858

Protein	Function_ID	Function_description	E-value
NZ_CP043009.1\|WP_003827403.1\|221852_222422_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|182401	PRK10353, PRK10353, DNA-3-methyladenine glycosylase I.	1.14254e-141
NZ_CP043009.1\|WP_003827420.1\|233517_234720_+\|AAA-family-ATPase	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	4.23163e-131
NZ_CP043009.1\|WP_003827412.1\|224947_226642_+\|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase	gnl\|CDD\|183198	PRK11560, PRK11560, kdo(2)-lipid A phosphoethanolamine 7''-transferase.	0
NZ_CP043009.1\|WP_003024315.1\|230443_231346_+\|dipeptide-ABC-transporter-permease-DppC	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	0
NZ_CP043009.1\|WP_148361338.1\|215386_216325_-\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.69018e-103
NZ_CP043009.1\|WP_003827423.1\|234755_236054_-\|transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.42033e-149
NZ_CP043009.1\|WP_003827418.1\|232336_233341_+\|dipeptide-ABC-transporter-ATP-binding-subunit-DppF	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP043009.1\|WP_148361343.1\|236171_237368_-\|methionine-gamma-lyase	gnl\|CDD\|168478	PRK06234, PRK06234, methionine gamma-lyase; Provisional.	0
NZ_CP043009.1\|WP_148361344.1\|237794_237902_+\|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein	gnl\|CDD\|372829	pfam13940, Ldr_toxin, Toxin Ldr, type I toxin-antitoxin system. This family includes the Ldr (long direct repeat) toxins. In Escherichia coli there are four Ldr toxins, LdrA, LdrB, LdrC and LdrD. These toxins inhibit cell growth, decrease cell viability and cause nucleoid condensation. LdrD expression is inhibited by the antisense RNA RdlD, which functions as an antitoxin.	2.71308e-08
NZ_CP043009.1\|WP_003827401.1\|221422_221863_-\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	2.997e-94
NZ_CP043009.1\|WP_148361342.1\|222581_223283_+\|autotransporter-domain-containing-protein	gnl\|CDD\|227858	COG5571, COG5571, Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion].	1.16286e-90
NZ_CP043009.1\|WP_003827415.1\|229414_230434_+\|dipeptide-ABC-transporter-permease-DppB	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	0
NZ_CP043009.1\|WP_003827397.1\|218298_218961_-\|OmpA-family-lipoprotein	gnl\|CDD\|182507	PRK10510, PRK10510, OmpA family lipoprotein.	1.98526e-133
NZ_CP043009.1\|WP_063941883.1\|223534_224737_+\|MFS-transporter	gnl\|CDD\|273323	TIGR00890, Uncharacterized_MFS-type_transporter_YhjX, oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	8.26298e-140
NZ_CP043009.1\|WP_003024317.1\|231356_232340_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182906	PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional.	0
NZ_CP043009.1\|WP_148361341.1\|219120_221454_+\|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase	gnl\|CDD\|273110	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.	0
NZ_CP043009.1\|WP_148361339.1\|216328_217078_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	0.00209108
NZ_CP043009.1\|WP_148361340.1\|217177_218194_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380506	cd06283, PBP1_RegR_EndR_KdgR-like, ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	9.93458e-109
NZ_CP043009.1\|WP_003827414.1\|227640_229248_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0

>NZ_CP043009.1|WP_003827412.1|224947_226642_+|kdo(2)-lipid-A-phosphoethanolamine-7''-transferase
MRYIKSMTQQKLSFLLAIYIGLFMNCAVFFRRFSGYAHEFTVWKGLSAVVELAGTVLVTFFLLRLLSLFGRRAWRVLTTLVVLCSAGASYYMTFLNVVIGYGIIASVMTTDIDLSKEVVGWHFVVWLVSVSILPLVLIWSNRCRYTLMKQIRTPGMRWRSVAVVLLAGLMVWAPIRLLSMQQRSVERATGIDLPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDNKSLMNPAKKFTYVAPKNLDDTYVVFIIGETTRWDHMGIFGYERNTTPRLAQEKNLAAFRGYSCDTATKLSLRCMFVREGGAEENPQRTLKEQNVFSVLGQLGFKTDLYAMQSEMWFYSNTMAENIAYREQIGAEPRNRGKNVDDMLLITEMQQSLQNNEDGGKHLIILHTKGSHFNYTQRYTREYAQWKPECVNVDSGCSKAQMINSFDNSVTYVDHFITKVFDQLRDKKAIVFYAADHGESINEREHLHGTPRKMAPPEQFRVPMMVWMSDKYLEDPDHAKAFAHLKQEADMKVPRRHVELYDTILGCLGYTSPNGGINENNNWCRIPDANKATAQ
>NZ_CP043009.1|WP_063941883.1|223534_224737_+|MFS-transporter
MKTSDYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSSKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGVGFFLTAHSDSLIMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDSQLLSTVGLEKTFMIWGAIVLVMIVFGSTLMKDAPNQEVKTKNGVVENDYTLAQSMRKPQYWMLAVMFLTACMSGLYVIGVAKDIAQSLAHMDVATAANAVTVISIANLSGRLVLGILSDKISRIRVITIGQVVSLVGMAALLFAPLNDVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASLFGGFYVTFCVIFALLIISLALSTTIRQPQRSVYTEAHA
>NZ_CP043009.1|WP_148361342.1|222581_223283_+|autotransporter-domain-containing-protein
MIIRNSSGRQRLTLASVVVCALSINTAYGWQQEYIVDAMSGHTAERYTWDSDHQPRYNDILEERIRSTQNVAGPVVNLADETPMDATSGMSMGWNFPLSRQVTTGPVAALHYDGSTTSTYNEFGDSATSVTQNDPLWHASVSSLGWRVNLQFGDVRPWAQISYNQQFGENIWKAQSGLSRMSAAGQDGNWVDVTVGADMLLNPHMAAYAALSQAENSTNNSDYMYTMGVSAKF
>NZ_CP043009.1|WP_003827403.1|221852_222422_-|DNA-3-methyladenine-glycosylase-I
MQRCGWVSQDPLYIAYHDKEWGVPETDGNKLFEMICLEGQQAGLSWITVLKKRENYRHAFHHFDPEKVAAMTEEDVERLVLDAGIIRHRGKIQAIIGNARAFLTMAQNGESFSEFVWSFVDNQPQVTRAANLSDIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVTSCICYPGEQHDS
>NZ_CP043009.1|WP_003827401.1|221422_221863_-|N-acetyltransferase
MIRESKAEDLPSILALWMESTIHAHPFIEERYWRESESVVRDVYLPAAQTWVWEEEGELKGFASVIDDRFLGALFVAPAAIRSGIGKALVQHVQQRFSILSLEVYQKNQSAVNFYHALGFRIEDGAWQEETHHPTWIMGWQADQTP
>NZ_CP043009.1|WP_148361341.1|219120_221454_+|molybdopterin-guanine-dinucleotide-containing-S/N-oxide-reductase
MANSPAHYSVLTAAHWGPILVDTDGETVFSSRGAQPTAHPNSLQTVVRDQVHSKTRVRFPMVRKGFLASPENPQGVRGQDEFVRVSWDDALNLIHTQHKRIRDSYGPASIFAGSYGWRSNGVLHKAATLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGNEVYQQQTSWPVVLENSEVVVLWSANPLNTLKIAWNASDEQGLAYFEALRDSGKRLICIDPMRSESVDFFGDKMEWIAPHMGTDVALMLGIAHTLVENGWHDEDFLARCTTGYDRFADYLLGKSDDVAKTAEWAADICGIPAAKIRELAAIFHQNTTMLMAGWGMQRQQYGEQKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRAAVLASMQGSVKGGTDAVDKIPVARIVEALENPGGFYQHNGMDRHFPDIRMLWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPQDEARNDFDVFAELSERWEKGGYERFTEGKSELAWLETFYNIAGQRGASQQVTLPPFAEFWQRNALIEMPENAASAQFIRFADFRRDPQAHPLKTDSGKIEIYSARIAGYGYADCGGHPMWLEPDEWFGNAEPDQLQLLSAHPAHRLHSQLNYSALREQYAVADREPITIHPQDAHARGIADGDTVRVWNQRGQVLAGAVVTAGIKPGVICIHEGAWPDLDLAVNGICKNGAVNVLTKDLPSSKLGNGCAGNTALAWLEKYSGPMLALTAFDPPASP
>NZ_CP043009.1|WP_003827397.1|218298_218961_-|OmpA-family-lipoprotein
MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSLVGAGIGALSSSKKDRGKGALIGAAAGAAVGGGIGYYMDVQEAKLREKMQGTGVSVTRSGDNIILNMPNNVTFDSSSANLKPAGANTLTGVAMVLKEYNKTAVNVLGFTDSTGSQDLNMRLSQQRADSVASALITQGVAANRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSPIQ
>NZ_CP043009.1|WP_148361340.1|217177_218194_-|substrate-binding-domain-containing-protein
MSKSTRATISDVAKAAKTGKTSISRYLNGEKHLLSDALLARIEQAIADLDYRPSLMARGLKHGRTRLIGLIIADITNPYSVNVLSGIEAACRDKGFTPLVCNTNNEVDQELHYLDLLRSYQVEGIVVNAVGMREEGLNRLQQSALPMVLIDRKIPDFACDMVGLDNTQAATVATEHLVEQGFEAILFLSEPLGMVNTRRERLSAFRATLAQYPGVIAQNAEVPLTDNTQLDDTLRQFHQQHRGMRKAVISANGAFTLQVARALKRIGLNWGSDIGLLGFDELEWAELAGVGITTLKQPTWQIGYTAVEQVVRRIDGGSAAIQEQVFSGELIVRGSTAR
>NZ_CP043009.1|WP_148361339.1|216328_217078_-|sugar-phosphate-isomerase/epimerase
MKRKIMVVTAAYGHDQVRAAGGQTAMLPIIAEAGADGVEIRRELLTEAELKTLSTMASAIEIFGLLACYSAPEPLFLEDGNLNPRLPELLEEAQALQALWLKVSLGHFSHTEQFNVLRQWLDNSGMELVVENDQTDCGRLQPMQRFNEACQAQNLPISLTFDMGNWLWVGDSPEQAAQNLASTVGYIHVKAAVAHRDSYRAVPPDAADPRWLALLKTLPNDVPRGIEFPLEGQDLTAVTRRYVELLREE
>NZ_CP043009.1|WP_148361338.1|215386_216325_-|sugar-kinase
MKNSLDVVTIGEAMAMFVATQTGELADVEQFIKRVAGAELNVATGLARLGLKVGWVSRVGNDSFGRFIVKSLEKEGIDAQGVTQDGRYATGFQLKSKVENGTDPIVEYFRKGSAASHLSIEDYHEDYFASARHLHLSGVAAALSASSYELLAHTARTMKAQGKTISFDPNLRPVLWKSEAEMVEKLNRLAFQADWVLPGLKEGMILTGQQTAEAIADFYLRHGVKAVIVKTGADGAWYKTASGEQGCVAPVKVDNVVDTVGAGDGFAVGVISALLEGRSLHQAVTRGNKIGALAIQVQGDSEGLPTREQLGE
>NZ_CP043009.1|WP_003827414.1|227640_229248_+|ABC-transporter-substrate-binding-protein
MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWEISEDGKTYTFHLRQGVKWQDNKEFKPTRDFNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDDKTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGSPEKVDLNPIGTGPFQLQQYQKDSRILYKAFEGYWGTKPQIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLMEQAGLNVGYLSFNTEKKPFDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTMWGYNDDVKDYTYDPEKAKALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMVQADWAKIGVQAKIVTYEWGEYLKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDGSNYSRWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIVAHSTVYEPVRKEVKGYVVDPLGKHHFENVSVE
>NZ_CP043009.1|WP_122973901.1|229248_229452_-|hypothetical-protein
MTSPKRRRMNCNITRILSNDARPGTVSLYCSQILSHANCIAGKALRRRALRLSGLHITGAQRFLNCF
>NZ_CP043009.1|WP_003827415.1|229414_230434_+|dipeptide-ABC-transporter-permease-DppB
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRLPVWEEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
>NZ_CP043009.1|WP_003024315.1|230443_231346_+|dipeptide-ABC-transporter-permease-DppC
MSQVTENKVIAAPVPMTPLQEFWHYFKRNKGAVVGLVYVVVMILIAVFANVLAPYNPADQFRDTLLAPPAWQEGGTMAHLFGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLLMGVVLGLIAGYFGGIVDNVIMRVVDIMLALPSLLLALVLVAVFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
>NZ_CP043009.1|WP_003024317.1|231356_232340_+|dipeptide-ABC-transporter-ATP-binding-protein
MALLNVDKLSVHFGDVGSEFRAVDRISYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAENLEFNGRDLKRISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGYQIMEAIKVHQGGNKKTRIQRAIDLLTLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGAAQDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPSGCLLNPRCPYATDKCRAEEPELNLLEGGRQSKCHYPLDDAGRPGL
>NZ_CP043009.1|WP_003827418.1|232336_233341_+|dipeptide-ABC-transporter-ATP-binding-subunit-DppF
MSTQKAALPQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIEVPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINSTLSKEERREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQQ
>NZ_CP043009.1|WP_003827420.1|233517_234720_+|AAA-family-ATPase
MVTIRWDIKTIDRLSMVEDVLKEFSCCDINIISMKVTPGRILIKSWCRQLQDISCVQSCLSQRADIINVAYLCEEISELSTPEPERPRYFSDIICSSQSMHALIEKAIKIADSKYTVLIRGDTGTGKELLARAIHNSGQRRFYPFIPVNCSALPESLMESEFFGYEKGAFSGADCKGKKGLFEMADKGTLFLDEFGEMSLSLQAKLLRVLQDGGIRRVGGAHIIPVNVRIIVATNANLEEMVEQRLLRADLYYRINVLSLTIPPLRERPQDISLLIRHFVQKYAKEFQRRIILDKACFDALHHHTWPGNVRELENTIIRLMLMAESDVITREELGMVNLPAVERGATERPFKEQVLCAERQLIEQMVEDNVSSRHIAKALGVSHTTVLNKIRGYQLESVG
>NZ_CP043009.1|WP_003827423.1|234755_236054_-|transporter
MQDNTLQLSNNTATAVPFSKKIPFTKYDFGWVLLCIGMAIGAGTVLMPVQIGLTGIWVFIVAFIIAYPATYIVQDIYLKTLSESETCNDYTDIISHYLGKNWGVFLGVIYFLMIIHGIFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAIASGGEKLLFKISGPMVVVKVGIIIVFGFAMVPHWNFANISAFPEASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKRVTDRVLATRMAIRTHRISYITLIAVILFFSFSFTFSISHEEAVSAFEQNISALALAAQVIPGQIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNVLSRVIDVEKINPLVLTLGICTFIVITLVIWVSFRVSVLVFFQLGSPLYGIVSCIIPFFLIYKVTQLEKLRGLKTWLILLYGILLCLSPLLKLIE
>NZ_CP043009.1|WP_148361343.1|236171_237368_-|methionine-gamma-lyase
MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIACFLEGHPSITRVYYPGLTSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF
>NZ_CP043009.1|WP_148361344.1|237794_237902_+|type-I-toxin-antitoxin-system-toxin-Ldr-family-protein
MTLAQLGVAFWHDFAAPIIAGIIASLIVSWLRNRK

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Crispr_ID: NZ_CP043009_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043009_2

670375-670497

Orphan

Consensus_repeat	Method
CGTAGGCCTGATAAGCGCAGCGCATCAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043009_2

>merge|NZ_CP043009|2|670375-670497|CRISPRCasFinder
CGTAGGCCTGATAAGCGCAGCGCATCAGGCACGGCGCACATTGCCGGATGGCGGCGCAAACACCTTATCCGGCCTACAAAGATTTGTACTCCGTAGGCCGGATAAGCGCAGCGCATCAGGCAC

>NZ_CP043009|2|2|670375-670497|CRISPRCasFinder
CGTAGGCCTGATAAGCGCAGCGCATCAGGCAC	GGCGCACATTGCCGGATGGCGGCGCAAACACCTTATCCGGCCTACAAAGATTTGTACTC
CGTAGGCCGGATAAGCGCAGCGCATCAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043009.1\|WP_148361440.1\|658231_661324_-\|beta-galactosidase-subunit-alpha	unknown	unknown	gnl\|CDD\|236673
NZ_CP043009.1\|WP_148361442.1\|667434_668208_+\|SIP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225250
NZ_CP043009.1\|WP_063941807.1\|664944_666465_+\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP043009.1\|WP_003828498.1\|680989_681418_+\|diol-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|376756
NZ_CP043009.1\|WP_003828536.1\|657785_658235_-\|beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
NZ_CP043009.1\|WP_048225651.1\|666518_667196_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP043009.1\|WP_148361443.1\|670504_672163_-\|glycerone-kinase	unknown	unknown	gnl\|CDD\|274097
NZ_CP043009.1\|WP_003024745.1\|672724_673822_+\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_CP043009.1\|WP_148361441.1\|663134_664625_-\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_CP043009.1\|WP_003828500.1\|680402_680987_+\|propanediol/glycerol-family-dehydratase-medium-subunit	unknown	unknown	gnl\|CDD\|237886
NZ_CP043009.1\|WP_003828512.1\|673912_675838_+\|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR	unknown	unknown	gnl\|CDD\|183114
NZ_CP043009.1\|WP_003828529.1\|662724_663057_+\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP043009.1\|WP_003828504.1\|677902_678331_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_CP043009.1\|WP_003828509.1\|675815_676346_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NZ_CP043009.1\|WP_032945068.1\|661531_662515_-\|transcriptional-regulator-EbgR	unknown	unknown	gnl\|CDD\|182389
NZ_CP043009.1\|WP_003828507.1\|676346_676700_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376757
NZ_CP043009.1\|WP_148361444.1\|676716_677880_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_CP043009.1\|WP_032934180.1\|669124_670279_+\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP043009.1\|WP_003828520.1\|668208_669057_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP043009.1\|WP_003828502.1\|678723_680391_+\|propanediol/glycerol-family-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|376755

Protein	Function_ID	Function_description	E-value
NZ_CP043009.1\|WP_148361440.1\|658231_661324_-\|beta-galactosidase-subunit-alpha	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_CP043009.1\|WP_148361442.1\|667434_668208_+\|SIP-domain-containing-protein	gnl\|CDD\|225250	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism].	3.21326e-81
NZ_CP043009.1\|WP_063941807.1\|664944_666465_+\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.23895e-72
NZ_CP043009.1\|WP_003828498.1\|680989_681418_+\|diol-dehydratase-small-subunit	gnl\|CDD\|376756	pfam02287, Dehydratase_SU, Dehydratase small subunit. This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	2.29163e-76
NZ_CP043009.1\|WP_003828536.1\|657785_658235_-\|beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	4.95079e-92
NZ_CP043009.1\|WP_048225651.1\|666518_667196_-\|transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.05515e-27
NZ_CP043009.1\|WP_148361443.1\|670504_672163_-\|glycerone-kinase	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NZ_CP043009.1\|WP_003024745.1\|672724_673822_+\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_CP043009.1\|WP_148361441.1\|663134_664625_-\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_CP043009.1\|WP_003828500.1\|680402_680987_+\|propanediol/glycerol-family-dehydratase-medium-subunit	gnl\|CDD\|237886	PRK15042, pduD, propanediol/glycerol family dehydratase medium subunit.	6.5463e-117
NZ_CP043009.1\|WP_003828512.1\|673912_675838_+\|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR	gnl\|CDD\|183114	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional.	0
NZ_CP043009.1\|WP_003828529.1\|662724_663057_+\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.60726e-46
NZ_CP043009.1\|WP_003828504.1\|677902_678331_-\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	9.08254e-40
NZ_CP043009.1\|WP_003828509.1\|675815_676346_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	1.78281e-71
NZ_CP043009.1\|WP_032945068.1\|661531_662515_-\|transcriptional-regulator-EbgR	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
NZ_CP043009.1\|WP_003828507.1\|676346_676700_-\|hypothetical-protein	gnl\|CDD\|376757	pfam02288, Dehydratase_MU, Dehydratase medium subunit. This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	1.83135e-26
NZ_CP043009.1\|WP_148361444.1\|676716_677880_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_CP043009.1\|WP_032934180.1\|669124_670279_+\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP043009.1\|WP_003828520.1\|668208_669057_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.00031e-27
NZ_CP043009.1\|WP_003828502.1\|678723_680391_+\|propanediol/glycerol-family-dehydratase-large-subunit	gnl\|CDD\|376755	pfam02286, Dehydratase_LU, Dehydratase large subunit. This family contains the large subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	0

>NZ_CP043009.1|WP_032934180.1|669124_670279_+|cyclopropane-fatty-acyl-phospholipid-synthase
MNSLCSDAVIVNETNDNWTRMGKELLSQADIRINGSRAWDIQLHHTGFFKRVLQQGSLGLGESYMEGWWDCERLDILFCKILRAKLDQQMPGNLKDILRIASARLFNLQSRSRAWIVGKEHYDIGNDLFALMLDPHMQYSCGYWKDATTLDDAQNAKLKMICEKLQLKPGMRLLDIGCGWGGLAEYAARHYGVAVEGVTISKEQQKMAQQRCEGLDVNILLQDYRDLDKHYDRIVSVGMFEHVGPKNYDTYFSIADRCLKPDGLFLLHTIGSNKKGMSVDPWINKYIFPNGCLPAISHIAEASESRFVMEDWHNFGSDYDKTLMAWHERFNQAWPELSSRYSATFRRMFNYYLCACAGAFRARDIELWQVLFSRGVEGGIRVYR
>NZ_CP043009.1|WP_003828520.1|668208_669057_-|AraC-family-transcriptional-regulator
MIRGQDLSSSGHTIGSIDDSFMETLAQKQWNSFPDNSMTELPQDVFFRSYVLEANHHVPQHSHSFMQFHFARKGSMRIDVAGKCWIIPAHYGIWIPNNTEHAVWALDDVYLENLDIKPGFLEESINECKVVAISDFAREFIHYATNSISGHYDSQSKEGKLVSVLVDIILQLPEVAFVLPWPQDRELTKVCRTIQESPALEHSVEYWAQHLGMSARTFSRHFKKETGLPFSVWKQKMRILESVLMLKKNKSVTAVALDVGYSSTAAFSYAFRQAFGVPPSNY
>NZ_CP043009.1|WP_148361442.1|667434_668208_+|SIP-domain-containing-protein
MTKNTSRYPQRVRNELRFRELTVLRVERISAGFQRIVLGGDALDGFSSRGFDDHTKVFFPEPGSHFVPPVVTDEGIVWADGVRPLSRDYTPLYDETRHELALDFYIHDGGVASTWAMNAREGDKLTIGGPRGSLVVPEDYAYQVYVCDESGMPALRRRLESICRLAVRPHVTALVSVQDAAYQDYFAHLDGFTLQWFIGHDEQAVNEHLSRLSVPADDYFIWITGEGKVVKNLSARFETEAFDQQRVRAAAYWHQRR
>NZ_CP043009.1|WP_048225651.1|666518_667196_-|transcriptional-regulator
MQNHHEGCCKHTEHQHEGCCKGEGHHHEGRHNEHHAGCCKGEEHRHEGCNKEHHHEQGCGHRHGRGGGGGRRQRFFGHGELRLVILDILTRDASHGYELIKAIETLTQGNYTPSPGVIYPTLDFLQDQALITVSDEEGGRKQIAITTQGQQWLDENREHLEHIHERIKARCVGFELRKNPQMKRALENFKAVLDLRVNHGDTSDAQIKKIIGIIDRAALDITQLD
>NZ_CP043009.1|WP_063941807.1|664944_666465_+|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MSSHPYVSQQNTPLDDDITLMSTTDLQSYITHANDTFVQVSGYQLNELLDKPHNQVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPMVREGRVTGYMSIRTRATDEEIAAVEPLYKALNEGRCNRRIHKGLVVRKGWLGKLPAMPIRWRVRSVMAFMFVLLAATLQQMGAEWPLLLMSALVMVLGTAIFEWQIVRPIENVTRQALKVATGERNSVSHLNRSDELGLMLRAVGQLGLMCRWLIHDVSSQVSCVRSDSETLAKGSDDLNKHTQQTVENVQETVTTMNQMAASVKQNSETAAAADKLSIAASSAATHGGEAMDTVIKTMDDIANSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSASAANDIRKLIDASADKVQSGSDQVHAAGRTMDDIVAQVQNVTQLIAQISHSTLEQSDGLSSLTRAVNELSNITQKNAELVEESAQISAMVKHRAGRLEDAVTVLH
>NZ_CP043009.1|WP_148361441.1|663134_664625_-|putrescine-aminotransferase
MRCFLVFIPIFAKRAGMAQSLQYLNQYHVIRELREHILNRLPSSASALACSAHALNLIEKRTLDHEEMKSLNKEVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFVDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALAPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGDINAMRTMLSECKKTGDDVAAVILEPIQGEGGVILPPQGYLTAVRKLCDEFDALMILDEVQTGMGRTGKMFACEHENVQPDIMCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVHDVRGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCDLVLRSTRKALAALRVSVEQM
>NZ_CP043009.1|WP_003828529.1|662724_663057_+|tRNA-binding-protein
MDTVAFADFARMEIRVGKIAQVKRHDNADKLYIVQVDVGERTLQTVTSLVPYYREEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERLMPAGVRIV
>NZ_CP043009.1|WP_032945068.1|661531_662515_-|transcriptional-regulator-EbgR
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKNQTSALGPQHILALYSYQQDLEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPESKHITGILIVGKPSPALREAATALTDNICFIDFHESGSEYDAVDIDLARISKESIDFFIAQGVTRIGFIGGEDQPGKADIREAAFVEYGRLQQVVSEQDIYRGGFSSSSGYELAKEMLAKPDYPSALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLFEKARDGRALPLLVFVPSKLKLRGTTR
>NZ_CP043009.1|WP_148361440.1|658231_661324_-|beta-galactosidase-subunit-alpha
MNRWENIQLTHENRLAPRAYFFSYDSVAQARSFARETSSLFQLLSGQWNFQFFEHPLLVPEAFTSQFMSDWGSITVPGMWQMEGHGKLQYTDEGFPFPIDIPYVPTNNPTGAYQRIFTLSEGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAVVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKQATHIQDFTVRTEFDDDYRDATLSCDIALENLASTPAIASLEYTLFDGEKALHSGVINTLKVDKQTQTAFHFKVSAPQQWSAESPYLYHLVMTLKDASGNILEVVPQRVGFRDIKVRDGLFYINNRYVMLHGVNRHDNDHLKGRAVGMDRVEKDLLLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANIGDISRITDDPLWENVYVERIVRHVHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLIHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYQHDCIQGHYVWEWCDHGIQAKDDDGNVWYKYGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKVCAQDLARGELRVENKLWFTTLDDYTLHIEVRAEGDTLSVQQIKLRDVPPNSDALLQCALPELDAREAFLNVTVTKDSRTSYSEAGHHIATYQFPLKARTAAAVPFSLQNANPLTLEDSRQSCTVRGYNFHLTFSKLTGKPIAWNVNGEELITREPKINFFKPTIDNHKQEFEGLWQPNHLQIMQEHLREFTLEQTDDALLITSQTIIAPPVFDFGMRCTYRWRIAADGQLNVELSGQPYGEYRDIIPCIGFTMGINGDLGQVAYYGRGPGENYADSQQANIIDIWRSSVDEMFENYPFPQNNGNRQDVRWAMLTNRHGNGLLVVPQRPVNLSAWRYTQENIFAAQHCNALQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFTSFSYGFTLLPVSGSESGAQTTANRAFGTGFFSTNMHSENTK
>NZ_CP043009.1|WP_003828536.1|657785_658235_-|beta-galactosidase-subunit-beta
MRIIDNLEQFQQRYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLSYRVETDSATDALFTGHRRYFEIHYYLQGQQKIEYAAKEDLQVVEYYRDETDREYLKGCGKTVEVHEGQMVICDNHEAYRFICNNAVKKVVLKVTIEDGYFHNK
>NZ_CP043009.1|WP_148361443.1|670504_672163_-|glycerone-kinase
MSQFFFNQRPHLVSDVIDGTIIASPWNNLARLESDPAIRIVVRRDLNKNNVAVISGGGSGHEPAHVGFIGKGMLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKHPRGIAGTILVHKIAGYFAERGYNLATVLREAQYAANNTFSLGVALSSCHLPQETDAAPRHHLGHAELGMGIHGEPGASVIDTQNSAQVVSLMVDKLLAALPETGRLAVMINNLGGVSVAEMAIITRELASSPLHPRIDWLIGPASLVTALDMKGFSLTAIVLEESIEKALLTEVETSNWPTPVPPREISCVPSSQRSARVEFQPSANALVAGIVELVTTTLSDLETHLNALDAKVGDGDTGSTFAAGAREIASLLHRQQLPLDNLATLFALIGERLTVVMGGSSGVLMSIFFTAAGQKLEQGANVAEALNTGLAQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAERTCLSSKANAGRASYLSSESLLGNMDPGAHAVAMVFKALAESELG
>NZ_CP043009.1|WP_003024745.1|672724_673822_+|glycerol-dehydrogenase
MLKVIQSPAKYLQGPDASTLFGQYAKNLADSFFVIADDFVMKLAGEKVLNGLHSHDISCHAERFNGECSHVEINRLIAILKQHGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIASTDAPTSALSVIYTEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVAGMGDALSTWFEAKACYDARATSMAGGQSTVAALSLARLCYDTLLAEGEKARFAAQAGVVTDALERIVEANTYLSGIGFESSGLAGAHAIHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPMEEIETVLNFCQKVGLPVTLAEMGVKEDVDGKIMAVAKATCAEGETIHNMPFPVTPESVHAAILTADLLGQQWLAR
>NZ_CP043009.1|WP_003828512.1|673912_675838_+|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR
MTAHTHSIGKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAALEDAWEFMDGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSLATMPGQPTKTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHECVSDLSLTLAIAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDAQASQGKNIHDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFILLLHPVEQMRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVGKELLSQAIHNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGNDFELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRKHLD
>NZ_CP043009.1|WP_003828509.1|675815_676346_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MYRIYTRTGDKGTTALFGGSRIDKDDIRVEAYGTVDELISQLGVCYASTHQAELRQDLHDMQKMLFVLGAELASDEKGLARLQQRIGDEDIQALEQLIDRNMAQSGPLKEFVIPGKNLPSAQLHVARTLARRLERVLIAMSRTLTLRDEPRRYINRLSDALFSMARIEETSPDACA
>NZ_CP043009.1|WP_003828507.1|676346_676700_-|hypothetical-protein
MSLSSPGVHLFYHSRWQDTRVLDELCWGLEEQGVPCRAICCDEHDCALALSKLAAKSSTLRVGLGLNATGDIALTHAQLPEDRALIRGHIRAGAAQLRVLGANAGQLVKVLPFSEIN
>NZ_CP043009.1|WP_148361444.1|676716_677880_-|iron-containing-alcohol-dehydrogenase
MSYRMFDYLVPNVNFFGPNAISVVGERCKLLGGKKALLVTDKGLRAIKDGAVDKTLAHLREAGIDVVVFDSVEPNPKDTNVRDGLEVFRKEHCDIIVTVGGGSPHDCGKGIGIAATHEGDLYSYAGIETLTNPLPPIVAVNTTAGTASEVTRHCVLTNTKTKVKFVIVSWRNLPSVSINDPLLMLGKPAPLTAATGMDALTHAVEAYISKDANPVTDAAAIQAIRLIARNLRQAVALGSNLKARENMAYASLLAGMAFNNANLGYVHAMAHQLGGLYDMPHGVANAVLLPHVARYNLIANPEKFADIAEFMGENTDGLSTMDAAELAIHAIARLSADIGIPQHLRDLGVKEADFPYMAEMALKDGNAFSNPRKGNEKEIAEIFRQAF
>NZ_CP043009.1|WP_003828504.1|677902_678331_-|heme-binding-protein
MNKSQQIATITLAAAKKMAQAVEAKALEINVPVVFSVVDHGGNTLLMQRMDDAFVTSCDISLNKAYTACCLRQGTHEITDAVQPGASLYGLQLTNQQRIVIFGGGLPVILNGKLIGAVGVSGGTVEQDRLLAETALNCFSEL
>NZ_CP043009.1|WP_003828502.1|678723_680391_+|propanediol/glycerol-family-dehydratase-large-subunit
MRRSKRFEVLAKRPVNQDGLIGEWPEEGLIAMESPYDPASSVKVENGRIIELDGKSRAEFDMIDRFIADYAINVAEAERAMQLDALEIARMLVDIHVSREEIIAITTAITPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYAPFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTESVFTDGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIFITKGAGVQGLQNGAVSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDNMFAGSNFDAEDFDDYNILQRDLMVDGGLRPVTEEETIAIRNKAARAIQAVFRELGLPLISDEEVEAATYAHGSKDMPARNVVEDLAAVEEMMKRNITGLDIVGALSCSGFEDIASNILNMLRQRVTGDYLQTSAILDRQFDVVSAVNDINDYQGPGTGYRISAERWAEIKNIAGVVQPGSIE
>NZ_CP043009.1|WP_003828500.1|680402_680987_+|propanediol/glycerol-family-dehydratase-medium-subunit
MECTTERKPVFTLQVSEGEAANADERVDEVVIGVGPAFAKYQHKTLIDMPHNAILKELVAGIEEEGLHARVVRILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAALFHIKETKHVVQDAAPVTLHIALVRE
>NZ_CP043009.1|WP_003828498.1|680989_681418_+|diol-dehydratase-small-subunit
MNDNIMTAQDYPLATRCPEKIQTPTGKPLTDITLENVLAGRVGPQDVRISQQTLEYQAQIAEQMQRHAVARNFRRAAELIAIPDARILEIYNALRPFRSSFAELQAIADELEHTWHARVNAGFVRESAEVYQQRNKLRKGSQ

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Crispr_ID: NZ_CP043009_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043009_3

1023390-1023489

Orphan

Consensus_repeat	Method
CTACGGTAAACAGCGAAACCTGTAGGCCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043009_3

>merge|NZ_CP043009|3|1023390-1023489|CRISPRCasFinder
CTACGGTAAACAGCGAAACCTGTAGGCCGGAGAAGGCGTTTACTGACCGATGCACGACGCTTATCGGCTCTACGGTAAACAGTGAAACCTGTAGGCCGGA

>NZ_CP043009|3|3|1023390-1023489|CRISPRCasFinder
CTACGGTAAACAGCGAAACCTGTAGGCCGGA	GAAGGCGTTTACTGACCGATGCACGACGCTTATCGGCT
CTACGGTAAACAGTGAAACCTGTAGGCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043009.1\|WP_148361522.1\|1016135_1016465_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|225640
NZ_CP043009.1\|WP_003825665.1\|1014040_1014889_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP043009.1\|WP_126317476.1\|1023518_1026275_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP043009.1\|WP_126317480.1\|1037015_1038572_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP043009.1\|WP_126317475.1\|1022197_1023340_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP043009.1\|WP_126317473.1\|1019413_1020754_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP043009.1\|WP_003825668.1\|1014957_1015503_+\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|235324
NZ_CP043009.1\|WP_003034127.1\|1031112_1032750_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP043009.1\|WP_008785690.1\|1017266_1017716_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP043009.1\|WP_003825690.1\|1027731_1029966_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP043009.1\|WP_148361525.1\|1036025_1036850_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224651
NZ_CP043009.1\|WP_003034076.1\|1012562_1013927_-\|nucleotide-5'-monophosphate-nucleosidase	unknown	unknown	gnl\|CDD\|378752
NZ_CP043009.1\|WP_148361524.1\|1035447_1035795_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043009.1\|WP_008785684.1\|1026332_1027631_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP043009.1\|WP_003034111.1\|1020774_1022115_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP043009.1\|WP_003825693.1\|1030096_1030888_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP043009.1\|WP_126317471.1\|1016464_1017247_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP043009.1\|WP_003034129.1\|1032837_1034136_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP043009.1\|WP_148361523.1\|1018058_1019411_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP043009.1\|WP_126317479.1\|1034331_1034646_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP043009.1\|WP_148361522.1\|1016135_1016465_+\|YqcC-family-protein	gnl\|CDD\|225640	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown].	3.00115e-50
NZ_CP043009.1\|WP_003825665.1\|1014040_1014889_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP043009.1\|WP_126317476.1\|1023518_1026275_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP043009.1\|WP_126317480.1\|1037015_1038572_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP043009.1\|WP_126317475.1\|1022197_1023340_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP043009.1\|WP_126317473.1\|1019413_1020754_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP043009.1\|WP_003825668.1\|1014957_1015503_+\|SecY-interacting-protein	gnl\|CDD\|235324	PRK04968, PRK04968, SecY interacting protein Syd; Provisional.	2.47058e-114
NZ_CP043009.1\|WP_003034127.1\|1031112_1032750_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP043009.1\|WP_008785690.1\|1017266_1017716_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	9.1023e-107
NZ_CP043009.1\|WP_003825690.1\|1027731_1029966_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP043009.1\|WP_148361525.1\|1036025_1036850_-\|SIS-domain-containing-protein	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.04431e-67
NZ_CP043009.1\|WP_003034076.1\|1012562_1013927_-\|nucleotide-5'-monophosphate-nucleosidase	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	8.36777e-85
NZ_CP043009.1\|WP_008785684.1\|1026332_1027631_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP043009.1\|WP_003034111.1\|1020774_1022115_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP043009.1\|WP_003825693.1\|1030096_1030888_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.47941e-158
NZ_CP043009.1\|WP_126317471.1\|1016464_1017247_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	0
NZ_CP043009.1\|WP_003034129.1\|1032837_1034136_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP043009.1\|WP_148361523.1\|1018058_1019411_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.03627e-159

>NZ_CP043009.1|WP_126317475.1|1022197_1023340_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYVKIPVADGGEGTVEAMVAATQGHLVHVDVTGPLGNTIQAFYGLSGDERSAFIEMAAASGLEQVPVGLRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGAKLLDAQNNEIAQGGIGLESLSRIDISQLDSRLAGCRIEVACDVTNPLTGKKGASAVFGPQKGATPEMITRLDRALTHYAQLIARDLDVNVLDLAGGGAAGGMGAALYAFCGAQLRCGIEIVTDALHLDACVADADLVVTGEGRIDSQTIHGKVPVGVAKVAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYSICTLDEALKNASDNVRMTARNVAATLKAGQQLR
>NZ_CP043009.1|WP_003034111.1|1020774_1022115_+|glucarate-dehydratase
MSAQFSTPLVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLNAVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVELDMDQVMKAHELYQQHGLGARDDAMGMQYLIPNWTFDNKRPCMVR
>NZ_CP043009.1|WP_126317473.1|1019413_1020754_+|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGNTGVGEAPGGEVIYQTLVDAIPQVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGKALNVPVCELLGPGKQRDAVTVLGYLFYVGDRTKTDLPYLESTPGNHEWYHLRHQQAMNSEAVVRLAQASQDRYGFKDFKLKGGVLPGEQEIDTARALKKCFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNSVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKKPLEIKNGKIAVPDAPGLGVELDWDQVQKAHEAYKALPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NZ_CP043009.1|WP_148361523.1|1018058_1019411_+|MFS-transporter
MSSLRQAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDAVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVAIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFVWLKVIHEPNQHPGVNQKELEYIAEGGALINMDQAAAKTKVPFSVKWGQIKQLLGSRMMIGIYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAICGFAGGVLGGIISDWLMRRTGSLNIARKTPIVLGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVVSYLVLVGDIKRIELKPVAGQ
>NZ_CP043009.1|WP_008785690.1|1017266_1017716_+|flavodoxin
MAEIGIFVGTMYGNALLVAEEAEAILTAQGHKATVFEDPELSDWQAYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDNLGFQPNLHYGVIALGDSSYVNFCNGGKQFDALLQEQSAHRVGEMLLIDASEHPEPESESNPWVENWGTLLK
>NZ_CP043009.1|WP_126317471.1|1016464_1017247_+|tRNA-pseudouridine(65)-synthase-TruC
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLSQQFEHHQIQKRYHAIVRGWLMDDAVLDYPLVEELDKIADKFARDDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELDPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFGCQRLMLHASQLALTHPFTGEPLVIRAGLDDVWMQALSQFGWRGLLSENERVEFSGLSGQDEQIDS
>NZ_CP043009.1|WP_148361522.1|1016135_1016465_+|YqcC-family-protein
MTTHDRVRQQLHALEALLREHHHWRMDEPAEHLFTSTQPFCMDTMEPVEWLQWVLIPRMHTLIDNAQPLPQAFAVAPYYEMALAADHPQRDILLAALQELDALFTSDNT
>NZ_CP043009.1|WP_003825668.1|1014957_1015503_+|SecY-interacting-protein
MDELTAQALIAFTTRYCDAWHEKNNSWPLSEELYGVPSPCIISSTDDAVFWRPQPFVGENNLNAVERAFDIVVQPAVHAFYTTQFAGDMHAQFADEKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLSPTLFIATQDNELDVISVCNLSGEVCKETLGTRKRTVLAASLAEFLTQLKPVL
>NZ_CP043009.1|WP_003825665.1|1014040_1014889_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MSSYENHQALNGLTLGKSTDYRDNYDASLLQGVPRSLNRDPLDLKADNLPFHGADIWTLYELSWLNANGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQTRFDSWDAVRQTLENDLRACAQGDVSVALYRLDELEGQPIAHFNGTCIDNQDIVIDNYQFSTAYLENAVSGEKAVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRKIDREKLLRYLVSFRHHNEFHEQCVERIFNDILRFCQPEKLSVYARYTRRGGLDINPWRTNTDFTPATGRLVRQ
>NZ_CP043009.1|WP_003034076.1|1012562_1013927_-|nucleotide-5'-monophosphate-nucleosidase
MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFESFDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLRDILFVNGQIHNAGRFQHLDLESSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSINENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPANKDQVLPLILTGPKESADYFRVLDEFIVHTLGEDARRHYRIIIDDAAEVARLMKKAMPLVKENRRDTGDAYSFNWSIRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAFSGIVAGNVKEVGIRAIEEFGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGTAYIPCYEICA
>NZ_CP043009.1|WP_126317476.1|1023518_1026275_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSEMQLATGSPFPRKLSVTRHGDIMILRTPIISESYSPDESAVSDAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHISLDLNPNVLVDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEVIYSPSFSGLPKDHYDILLLGIPVTLREPLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHSADPLLLDESKIAMTVMAVDDNPANLKLIGALLEDKVQHVVLCDSGHQAVDRARQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEDKLHNLLLRYKPGASTSLRALTAEPLEPVVNPNTTLDWQLALRQAAGKNDLARDMLQMLIDFLPEVRNKIEEQLVGENPEGLVDMIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEELEPEFLELLDEMDNVAREAKKLLG
>NZ_CP043009.1|WP_008785684.1|1026332_1027631_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPELLPQESAEVVITEDKKQFARAQVKRRLNDSPQREVPRCPHFGVCGGCQQQHASISLQQRSKSAALSRLMKCEVSDVIADAPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDIIDVKQCPILVPQLEALLPHLRACLESLQGLRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLECFSHSQGLSLFLAPQSEILESISEESPWYDSNGLRLTFSPRDFIQVNEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENALNNGLHNVTFFHENLEEDVTRQPWAKNGFDKVLLDPARAGAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHTGHLESMVLFERL
>NZ_CP043009.1|WP_003825690.1|1027731_1029966_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSMLSMDIDTLRAAMLFPLADANVVSEDILRESVGKSIVHLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIDEFVGHLRSEMKTEGVKAEVYGRPKHIYSIWRKMQKKQLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTIEIQIRTKQMHEDAELGVAAHWKYKEGTASGAARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYSFNELDELLAAIGGGDIRLNQMVNFLQAQFNKPSAAEQDAAALKQLQQKTQAPQSRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NZ_CP043009.1|WP_003825693.1|1030096_1030888_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLGIMQRLRDPENGCPWDKEQTFSTIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFNFDDICAAISDKLERRHPHVFADVSASNSTEVLTRWEKIKSEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWKTLGPVVDKVYEEIDEVMFEAKQAVVDQAKLEEEMGDLLFATVNMARHLGTKAETALQKANEKFERRFREVERIVASRGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP043009.1|WP_003034127.1|1031112_1032750_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTMMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKGLDAILIPGGFGYRGVEGKIATARFARENNIPYLGICLGMQVALIEFARNVVGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRTEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRIAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP043009.1|WP_003034129.1|1032837_1034136_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFMGKGVLKAVAAVNGPIAQALLGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGLPLYAHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTLKEAVRMGSEVFHNLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIVNSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEQAPYNGRKEIKGQA
>NZ_CP043009.1|WP_126317479.1|1034331_1034646_+|hypothetical-protein
MNNELEDILAKAGMKKKDAAILIKLAKLKNISLSWAFFLYAWTYYAWSAALLLAVIFASFSEGIEFFIVNVFFCMAVALVSLFFTPFVINLIWSIKIQYKLLGK
>NZ_CP043009.1|WP_148361524.1|1035447_1035795_+|hypothetical-protein
MLFKTYDQNDKSLTERIKLAGLSEYKAQKLIRFANEKKVNIQKAYLLTDASVIRGDIIMAFVMSFFIFSIGQEDFSELRALFLIFGLLFFVIELTCRFHKNYFKVWGIYIKLRGI
>NZ_CP043009.1|WP_148361525.1|1036025_1036850_-|SIS-domain-containing-protein
MSENENLLLRLRQGVDGYSRTQQKLGKFVLSDPAKVVYLTITELARESDTSEASVTRLCRALGCKGYNEFKMALALDLQQGQPVEHSGDEIDNVVNESVQALQDTAKLLDRTLLESAALALHQAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKDTLVVAISSSGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALNAKVGVMLLVELLTTSLIALDEKYSDVSQQTASATLPLLL
>NZ_CP043009.1|WP_126317480.1|1037015_1038572_+|PTS-transporter-subunit-EIIC
MMQMFSGASSGAWFEKAQRFGKSFMLPIAVLPAAGLLLGIGGALSNPNTLTAYPFLDVDWLQAIFTIMTSAGSIVFANLSVLFAVGVAVGLAKTDKGTAGLAALLAFLVMNATINALLTLNGTLAHENPGTVGQGMTLGIQTLETGVFGGVVIGLVTCALHSRFNKVSLPQFLGFFSGSRFVPIISSLAAIVVGAVMTVVWPHFQKLIFGLGGLVDATGHLGTLLYGFILRMLGPLGLHHIFYLPFWTTALGGSEIVNGQLVEGTQRIFFAQLADPNTQQFYAGTSRFMSGRFITMMFGLLGACLAMYHTARPENRKLVAGLLLSAALTSFLTGITEPIEFSFLFVAPVLYVIHAFFDGLAFMMAHILHITIGQTFSGGLIDFLLFGVLQGEAKTNWMYVPMVGIPWFFLYYFTFRYLINRFNWLTPGRENAAPTESGLPQSERAAAVIAGLGGKENLEEVDCCATRLRVTVKESSKVDEAALKATGARGVIIRGNGVQVIYGPHVTIIKNEVEEILS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1773826 : 1782245

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148361753.1\|1773826_1774774_+	ATP-binding cassette domain-containing protein	F2Y1V5	Organic_Lake_phycodnavirus	1.0e-07	26.1
WP_128316781.1\|1774757_1775489_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|1775469_1775577_-	protein YohO	NA	NA	NA	NA
WP_048224569.1\|1775628_1776360_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.3e-105	93.0
WP_003834458.1\|1776585_1778271_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
WP_003840155.1\|1778267_1778987_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003834454.1\|1779033_1779504_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-63	77.4
WP_032943976.1\|1779547_1780006_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-52	69.9
WP_003834451.1\|1780211_1782245_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	5.2e-54	27.6

DBSCAN-SWA_2

1833322 : 1842891

Bacillus_phage(28.57%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048215946.1\|1833322_1835269_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.4e-40	41.8
WP_003036813.1\|1835343_1835568_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_003036810.1\|1835891_1836212_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036804.1\|1836242_1838519_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
WP_003834280.1\|1838787_1840149_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-204	92.9
WP_003834279.1\|1840308_1840641_-	YegP family protein	NA	NA	NA	NA
WP_121367814.1\|1840768_1841491_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	7.1e-30	32.7
WP_003834277.1\|1841487_1842891_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	2.3e-32	29.2

DBSCAN-SWA_3

1884748 : 1891049

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148361782.1\|1884748_1886143_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.1e-22	34.6
WP_003841818.1\|1886308_1887202_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	4.3e-45	39.9
WP_148361783.1\|1887574_1888660_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.4e-100	53.4
WP_148361784.1\|1888659_1889559_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.1e-29	35.3
WP_148361785.1\|1889609_1890488_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.3e-106	63.8
WP_148361786.1\|1890491_1891049_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.8e-49	55.6

DBSCAN-SWA_4

2721408 : 2731416

Brazilian_cedratvirus(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003832594.1\|2721408_2722188_+	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	3.2e-12	27.8
WP_148362061.1\|2722184_2723627_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.0e-51	35.3
WP_063941497.1\|2723688_2724402_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003836644.1\|2724720_2725185_-	lipoprotein nlpC	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_003030567.1\|2725262_2726012_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_148362062.1\|2726011_2726563_-	glutathione peroxidase	NA	NA	NA	NA
WP_148362063.1\|2726623_2727604_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	25.1
WP_003030571.1\|2727725_2728025_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_079933930.1\|2728029_2730417_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003832580.1\|2730432_2731416_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5

DBSCAN-SWA_5

2899255 : 2904293

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148362116.1\|2899255_2900212_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.4e-17	28.1
WP_148362117.1\|2900212_2900980_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	W6JKT0	Anomala_cuprea_entomopoxvirus	5.4e-12	26.6
WP_048211256.1\|2901416_2902115_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	5.0e-89	68.5
WP_047041444.1\|2902200_2902521_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	7.7e-21	43.8
WP_148362118.1\|2902565_2903855_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	4.9e-167	70.2
WP_148362119.1\|2903867_2904293_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	5.6e-51	71.4

DBSCAN-SWA_6

3778352 : 3788358

Enterobacteria_phage(100.0%)

integrase,capsid

attL 3778057:3778070|attR 3788527:3788540

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3778057:3778070	attL	NA	NA	NA	NA
WP_148362401.1\|3778352_3780686_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5
WP_148362402.1\|3780697_3781018_-	DUF5375 family protein	NA	NA	NA	NA
WP_148362696.1\|3781014_3781242_-	hypothetical protein	NA	NA	NA	NA
WP_148362403.1\|3781346_3781796_-	hypothetical protein	Q7M298	Enterobacteria_phage	5.3e-44	66.4
WP_148362404.1\|3781788_3782088_-	Derepression protein	Q7M2A0	Enterobacteria_phage	1.7e-30	65.7
WP_148362405.1\|3782080_3782680_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	6.7e-42	70.1
WP_101701361.1\|3782676_3782943_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.3e-23	63.6
WP_114675941.1\|3783495_3784299_+\|capsid	capsid protein	Q7M2A2	Enterobacteria_phage	8.7e-13	25.8
WP_000984214.1\|3784295_3784538_+	hypothetical protein	Q7M294	Enterobacteria_phage	1.4e-19	58.0
WP_148362406.1\|3784554_3785130_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.6e-38	50.8
WP_148362407.1\|3785173_3785359_+	hypothetical protein	NA	NA	NA	NA
WP_148362408.1\|3785399_3787166_-	ATP-binding protein	NA	NA	NA	NA
WP_148362409.1\|3787176_3788358_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	9.5e-141	61.1
3788527:3788540	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP043007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2263 : 29608

Escherichia_phage(35.71%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000331736.1\|2263_2989_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.4e-40	42.2
WP_000750474.1\|3088_3499_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000208727.1\|3601_4561_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000633445.1\|4706_5795_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	9.7e-124	61.7
WP_001067852.1\|5857_6562_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.0e-139	99.6
WP_000557466.1\|6825_7899_-	hypothetical protein	NA	NA	NA	NA
WP_000534857.1\|8433_8673_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	2.0e-18	54.4
WP_000323025.1\|8672_8960_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_004192759.1\|8843_9191_-	hypothetical protein	NA	NA	NA	NA
WP_001531258.1\|9263_10046_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_000627495.1\|10042_11065_-\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-174	85.3
WP_085950818.1\|13280_14401_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_004193081.1\|14413_14782_+	hypothetical protein	NA	NA	NA	NA
WP_000600827.1\|14829_15807_-\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	1.1e-06	34.9
WP_000480968.1\|17755_18592_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|18591_19395_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000134999.1\|19808_20450_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_029404405.1\|21410_21947_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.9e-44	85.2
WP_000454193.1\|22072_22423_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845054.1\|22625_23639_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
WP_001083725.1\|23783_24281_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|24392_24683_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|24688_25480_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|25643_25991_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|25984_26824_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_001993321.1\|26753_26933_-	hypothetical protein	NA	NA	NA	NA
WP_000376623.1\|26951_27452_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001381192.1\|27420_28413_-	AAA family ATPase	NA	NA	NA	NA
WP_001067855.1\|28903_29608_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043009

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP043007

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection