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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042983 Histophilus somni strain UOC-KLM-ATR-01 chromosome, complete genome 4 crisprs cas14j,DEDDh,DinG,cas3 0 0 145 0

Results visualization

1. NZ_CP042983
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042983_1 353049-353136 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042983_2 734185-734273 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042983_3 1472019-1472117 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042983_4 1683388-1683483 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 29832 30 Streptococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_2 41062 : 45355 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 48867 : 52226 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 60034 : 60415 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 74744 : 77814 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 80883 : 87696 7 Prochlorococcus_phage(33.33%) protease NA
DBSCAN-SWA_7 103974 : 104904 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 123363 : 129949 6 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_9 138564 : 143201 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 150248 : 151169 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_11 162310 : 174593 5 Chrysochromulina_ericina_virus(33.33%) NA NA
DBSCAN-SWA_12 178114 : 193263 15 uncultured_Caudovirales_phage(28.57%) protease NA
DBSCAN-SWA_13 204072 : 205518 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_14 208835 : 213822 4 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_15 217944 : 224004 5 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_16 228151 : 236370 8 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_17 245509 : 311708 69 Haemophilus_phage(35.9%) head,plate,tRNA,tail NA
DBSCAN-SWA_18 314885 : 319576 3 Vibrio_phage(66.67%) NA NA
DBSCAN-SWA_19 324692 : 327850 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_20 346352 : 350966 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_21 362234 : 363341 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_22 388301 : 397853 8 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_23 405608 : 407612 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_24 424383 : 431132 5 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_25 434471 : 437273 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_26 443321 : 445178 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_27 450904 : 454680 4 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_28 465183 : 466647 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_29 471165 : 475481 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_30 481857 : 482121 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_31 488090 : 491609 3 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_32 500631 : 501929 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_33 506173 : 508138 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_34 511160 : 511643 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_35 522399 : 529671 6 Tupanvirus(16.67%) transposase NA
DBSCAN-SWA_36 541526 : 545152 2 Enterococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_37 548812 : 549580 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_38 557336 : 558845 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_39 567285 : 568293 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_40 575385 : 584919 8 Tupanvirus(20.0%) NA NA
DBSCAN-SWA_41 610402 : 620104 8 Enterobacteria_phage(16.67%) tRNA NA
DBSCAN-SWA_42 627723 : 629238 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 635321 : 636615 2 Bradyrhizobium_phage(50.0%) NA NA
DBSCAN-SWA_44 641825 : 650023 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_45 658994 : 662851 4 Synechococcus_phage(66.67%) NA NA
DBSCAN-SWA_46 667299 : 671757 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_47 675437 : 679173 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_48 683665 : 685645 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 693568 : 697557 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_50 703102 : 704527 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_51 727070 : 737345 9 Organic_Lake_phycodnavirus(40.0%) NA NA
DBSCAN-SWA_52 742021 : 745496 2 EBPR_podovirus(50.0%) NA NA
DBSCAN-SWA_53 756217 : 762481 5 Vibrio_phage(40.0%) tRNA NA
DBSCAN-SWA_54 781037 : 781685 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_55 816500 : 820582 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_56 832948 : 838024 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_57 844423 : 858555 10 Ostreococcus_tauri_virus(20.0%) holin,tRNA,protease NA
DBSCAN-SWA_58 863373 : 864219 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_59 876199 : 878131 2 Pseudomonas_phage(50.0%) tRNA,protease NA
DBSCAN-SWA_60 884638 : 886156 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_61 890567 : 892058 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_62 902496 : 903546 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_63 912775 : 913792 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_64 936516 : 940803 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_65 948101 : 955559 5 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_66 966136 : 968605 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_67 974513 : 979337 5 Orpheovirus(33.33%) NA NA
DBSCAN-SWA_68 983154 : 985650 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_69 992450 : 992792 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_70 996450 : 996924 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_71 1007452 : 1010542 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_72 1015682 : 1035125 19 Tupanvirus(12.5%) tRNA,protease NA
DBSCAN-SWA_73 1043848 : 1046743 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_74 1053765 : 1054185 1 Sphingomonas_phage(100.0%) NA NA
DBSCAN-SWA_75 1057200 : 1057743 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_76 1064256 : 1069434 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_77 1079642 : 1090905 4 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_78 1104499 : 1118163 13 Cellulophaga_phage(14.29%) NA NA
DBSCAN-SWA_79 1122477 : 1124502 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_80 1136658 : 1152255 16 Escherichia_phage(14.29%) tRNA NA
DBSCAN-SWA_81 1160297 : 1167454 8 Pseudomonas_phage(40.0%) lysis NA
DBSCAN-SWA_82 1173424 : 1173709 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_83 1182668 : 1183394 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_84 1190785 : 1194700 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_85 1198733 : 1199681 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_86 1204248 : 1205688 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_87 1214033 : 1214678 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_88 1238468 : 1242420 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_89 1245935 : 1247782 2 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_90 1252572 : 1258617 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_91 1262878 : 1263529 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1270092 : 1272289 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_93 1299029 : 1305288 5 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_94 1311363 : 1314441 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_95 1330980 : 1332943 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_96 1339307 : 1341953 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_97 1347885 : 1354227 7 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_98 1368452 : 1369754 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_99 1373834 : 1384177 8 Staphylococcus_phage(42.86%) integrase attL 1374891:1374913|attR 1380319:1380341
DBSCAN-SWA_100 1391184 : 1404177 5 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_101 1415902 : 1420086 5 Burkholderia_phage(40.0%) NA NA
DBSCAN-SWA_102 1424305 : 1430880 5 Escherichia_phage(66.67%) integrase attL 1418828:1418842|attR 1426709:1426723
DBSCAN-SWA_103 1438237 : 1438807 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_104 1443801 : 1444458 1 Acaryochloris_phage(100.0%) NA NA
DBSCAN-SWA_105 1447532 : 1449713 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_106 1457185 : 1459597 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_107 1464871 : 1469296 7 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_108 1481436 : 1484148 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_109 1488005 : 1506767 16 Ostreococcus_lucimarinus_virus(12.5%) transposase,tRNA NA
DBSCAN-SWA_110 1510081 : 1511488 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_111 1520344 : 1521679 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_112 1546729 : 1550603 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_113 1558071 : 1567384 9 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_114 1574539 : 1581944 6 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_115 1587681 : 1649455 60 Escherichia_phage(14.29%) transposase,tRNA,integrase,protease attL 1599801:1599817|attR 1642717:1642733
DBSCAN-SWA_116 1663995 : 1666599 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_117 1675821 : 1676457 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_118 1680046 : 1683230 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_119 1687421 : 1688313 2 Mannheimia_phage(50.0%) NA NA
DBSCAN-SWA_120 1694081 : 1747801 59 Mannheimia_phage(40.0%) terminase,protease,transposase,integrase,capsid attL 1714127:1714143|attR 1743637:1743653
DBSCAN-SWA_121 1757382 : 1759071 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_122 1763084 : 1769919 7 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_123 1775884 : 1777721 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_124 1807307 : 1811894 5 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_125 1823725 : 1824733 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_126 1842350 : 1843088 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_127 1847699 : 1850966 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_128 1860922 : 1862443 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_129 1871796 : 1878748 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_130 1885707 : 1886457 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_131 1899358 : 1899619 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_132 1904807 : 1905761 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_133 1910048 : 1929417 14 Enterobacteria_phage(11.11%) tRNA NA
DBSCAN-SWA_134 1942657 : 1943917 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_135 1948078 : 1948309 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_136 1961069 : 1974713 16 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_137 1980326 : 1988313 10 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_138 2007850 : 2012661 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_139 2035262 : 2036771 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_140 2048917 : 2050457 2 Synechococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_141 2053904 : 2055670 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_142 2059292 : 2060783 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_143 2073000 : 2074035 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_144 2077978 : 2091109 13 Escherichia_phage(57.14%) NA NA
DBSCAN-SWA_145 2106695 : 2108570 1 Catovirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage