CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041022	Klebsiella pneumoniae strain KP1677 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,WYL	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041022_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041022_1

1216592-1216686

Orphan

Consensus_repeat	Method
GTGCAGGAGATTCACCAGGGGGTAGTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041022_1

>merge|NZ_CP041022|1|1216592-1216686|CRISPRCasFinder
GTGCAGGAGATTCACCAGGGGGTAGTGCAAATCGTTCACTACCTGGTGCAGGAGATTCACTACCTGGTGCAGGAGATTCACCAGGGGGTAGTGCA

>NZ_CP041022|1|1|1216592-1216686|CRISPRCasFinder
GTGCAGGAGATTCACCAGGGGGTAGTGCA	AATCGTTCACTACCTGGTGCAGGAGATTCACTACCTG
GTGCAGGAGATTCACCAGGGGGTAGTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041022.1\|WP_023313522.1\|1219857_1220331_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_023313518.1\|1222832_1223300_+\|lysis-protein	unknown	unknown	gnl\|CDD\|281263
NZ_CP041022.1\|WP_020948182.1\|1212502_1212721_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_023313521.1\|1220327_1221110_+\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP041022.1\|WP_004177202.1\|1213305_1213530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_032409529.1\|1216141_1216330_+\|DUF4222-domain-containing-protein	unknown	unknown	gnl\|CDD\|372855
NZ_CP041022.1\|WP_031592550.1\|1212065_1212506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_148865096.1\|1217168_1218062_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181180
NZ_CP041022.1\|WP_023313530.1\|1213712_1214126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_071646927.1\|1215104_1215338_+\|Cro/Cl-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|374243
NZ_CP041022.1\|WP_023313529.1\|1214289_1214964_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|119397
NZ_CP041022.1\|WP_046622147.1\|1212692_1212947_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_023313528.1\|1215339_1216101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_023313519.1\|1222296_1222836_+\|lysozyme	unknown	unknown	gnl\|CDD\|226295
NZ_CP041022.1\|WP_023313524.1\|1219407_1219776_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_CP041022.1\|WP_023304721.1\|1212939_1213305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_004151282.1\|1222045_1222294_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368216
NZ_CP041022.1\|WP_052749781.1\|1221328_1221877_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041022.1\|WP_019705419.1\|1223330_1223546_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NZ_CP041022.1\|WP_012967895.1\|1223727_1223910_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041022.1\|WP_023313519.1\|1222296_1222836_+\|lysozyme	gnl\|CDD\|226295	COG3772, COG3772, Phage-related lysozyme (muraminidase) [General function prediction only].	7.37196e-55
NZ_CP041022.1\|WP_023313518.1\|1222832_1223300_+\|lysis-protein	gnl\|CDD\|281263	pfam03245, Phage_lysis, Bacteriophage Rz lysis protein. This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.	2.2343e-27
NZ_CP041022.1\|WP_023313524.1\|1219407_1219776_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	1.44458e-11
NZ_CP041022.1\|WP_023313521.1\|1220327_1221110_+\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	2.32453e-29
NZ_CP041022.1\|WP_032409529.1\|1216141_1216330_+\|DUF4222-domain-containing-protein	gnl\|CDD\|372855	pfam13973, DUF4222, Domain of unknown function (DUF4222). This short protein is likely to be of phage origin. For example it is found in the Enterobacteria phage YYZ-2008. It is largely found in enteric bacteria. The molecular function of this protein is unknown.	4.90906e-15
NZ_CP041022.1\|WP_019705419.1\|1223330_1223546_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	6.56861e-24
NZ_CP041022.1\|WP_148865096.1\|1217168_1218062_+\|ATP-binding-protein	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	1.8092e-33
NZ_CP041022.1\|WP_004151282.1\|1222045_1222294_+\|hypothetical-protein	gnl\|CDD\|368216	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	3.08705e-28
NZ_CP041022.1\|WP_071646927.1\|1215104_1215338_+\|Cro/Cl-family-transcriptional-regulator	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	4.37042e-11
NZ_CP041022.1\|WP_023313529.1\|1214289_1214964_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	2.28837e-19

>NZ_CP041022.1|WP_032409529.1|1216141_1216330_+|DUF4222-domain-containing-protein
MFPETGGIKALDRLYHDPRGVVVHVTGWDREKQQVYFTRPDYPHECMQPVWKFQQYFTRVLV
>NZ_CP041022.1|WP_023313528.1|1215339_1216101_+|hypothetical-protein
MSQQSTMSRVSQKPFHCINGSRDVVNPDHCPSRLVLLKFGVKGRKVVINSLFIALALAPSKMKAQCIEVKLPLYTNNFSFPQALQFGGKKQLYGVGNRIEFIKPVPGERALIAIPQPKTKGNQSPDEHDQGRVGIEQQNELSPDASHKFWRLLLIQLSVFAAAFPAGVYISMRRNIHRDWRQHIPKGRLPKAPVMGMLSIWFFPRKIKPLSWQVWEQRSWFLDMKIRYGFEIAYRDTWYWKKLSLRGGKREPK
>NZ_CP041022.1|WP_071646927.1|1215104_1215338_+|Cro/Cl-family-transcriptional-regulator
MNEEIRVKLCAITSQRAIAQGLGVTPQAVNQWFAKSVIPARFVLKLCEFVGWAITPHQVRPDLYPSELDGMPRTAEV
>NZ_CP041022.1|WP_023313529.1|1214289_1214964_-|LexA-family-transcriptional-regulator
MATANMIQELLKEKGWSKAELARQLGVSTQTVVYWTKGDTVPRGKRLARLSEISGYPQSWFLGEGQPATFPASAQKGDTDSVKFKVLDIEFSCGDGVSVKSDFIDVVRSIELDPEYARQVVGNRPFKNIEIGNARGDSMSPTIAPGDLLFLDKTITYFDGDGIYAFCFEGECYVKRLQKIGSKIVVLSDNSNYQSWSIEKDALDMLYIQSKVISSVPFNINRFG
>NZ_CP041022.1|WP_023313530.1|1213712_1214126_-|hypothetical-protein
MKTPIQMLEVFVSDIIENTVLLEEIYKKSNENYETDCSINSLIRSMQKTVDNMNGYIKSHINSVKPCIPVAARKDLADDIFDVILTAKKLEAVAQTYSESFFTDEDNDNPACHMSAVIFDYARELCTDLKAIENKIG
>NZ_CP041022.1|WP_004177202.1|1213305_1213530_-|hypothetical-protein
MGMQRRQDIQCVTIKAEQLNFLMQTIFTHHKDFDCHQLDGVLGLAYDLAGEVYSWMEKEEKIVQQNEEHKRRGN
>NZ_CP041022.1|WP_023304721.1|1212939_1213305_-|hypothetical-protein
MSNLITTYRRRILKAALLRHQRKTGSSLLVIKLNKGGISTIELTEILLDGLLRKFERLALGEYGNVEGVKALKGIYSNSVDVNGSGEFLTESGKELIDELISELVEFVKKQKPVTAESGNE
>NZ_CP041022.1|WP_046622147.1|1212692_1212947_-|hypothetical-protein
MNNQQTMLYQGVLFPRPVLNVDLHVLPDFTGRVVVHIENGRVICDRQLFDDEHICTLATFIEMAREMELRFEEVAGGTNSNTHS
>NZ_CP041022.1|WP_020948182.1|1212502_1212721_-|hypothetical-protein
MALTAIRIPERVHLQALQVLLRYRRKRVYARRMRRTGYLSLKVNPRWRLLSKDDGRNWEVMSHETYNREKDK
>NZ_CP041022.1|WP_031592550.1|1212065_1212506_-|hypothetical-protein
MIDNRTASAIDLALQKHHTPVGDLFVAIRHGRMKRCFSRGTAISWLAHFLTSHAFARSGFTQRHPDVQVVHPLKPELTHWQRGAVTLEYFNAHQRTARRLRRILARKREMQKWCEKWDAMHDRYVKEREELQASKPAEVRNASQHA
>NZ_CP041022.1|WP_148865096.1|1217168_1218062_+|ATP-binding-protein
MLNLNQLKEREDLRAQQEKLRDELTFAEEHKLPWGFEGWNSNHTCTISCPEHGDYEQLTLVGKDFRGAEAFKHSRCPACIRAEQTSVKSSLRKLHVASLLNDAGITRRFGDCEFENYLELNPEASRNLAACRRYANNWPDVLDAGKSLVLTGSCGTGKNHLAVSLAKNIIRNHLATVELTDVMRLTRAVKSTWRHNADTTEESVLDHYASLDLLIIDEVGVQFGSPAEMTILHEVINARYESVLPTILISNLPPEQLKEFISDRIFDRVTDGGRNYLVFNWASFRGNNGGMHDTRLA
>NZ_CP041022.1|WP_023313524.1|1219407_1219776_+|RusA-family-crossover-junction-endodeoxyribonuclease
MKIFNITPMGKPRMTRADKWKQREVVMRYRAFCDEVRLKNVAMPEQGGHITFVVPMPKSWSQKKRVTMNGQAHQQKPDADNMIKALMDALFTDDAHIWDFRVTKVWGESGQILISDIGEVST
>NZ_CP041022.1|WP_023313522.1|1219857_1220331_+|hypothetical-protein
MRSNNNEHNKYFSVDAGISSETITKAERLVMERFSHIYANWADEKNLSREAEELRVREIKGFKNILLSPWTLSDVTIEWDYWESVLSHRYKTQNGDGYVQIIWDRRGWLTDLLYVMKPVTRAEALTVCKWLLACDYFEERDSLFDRIILNLVGECEE
>NZ_CP041022.1|WP_023313521.1|1220327_1221110_+|antitermination-protein
MKLEASLKHFSPQGMHITDDVKSTSPNRLNGTDIMTGIGVTSSRARFGLAAFFGKAGISKTDEQLAIQALAQFAIKNAPKNVRKAAGDKLGACMLTLAQFAFAEYSRSAATSATCHSCSGTGFISLHEDVIKHPGIFDADGVVVKAPKIRNELVKRVCRVCGGKKVIHARCRCGGKGEVLDRKATKELGAPVFKTCERCSGNGFSVVPSATVHRAILKRLPDLHQSSWSRNWKPFYEGLVDMLHKGERQAAAEFEKATIY
>NZ_CP041022.1|WP_052749781.1|1221328_1221877_+|hypothetical-protein
MNALPGFGGVFRKNEPTTPSVMSNNVSVITKKINPKGDIKAKYFTYTNPVTFSPYEQECYYNVARMIREHGGEAIYGWVLWESDIMIEGEAHCLYKDLSGNVFDITPRVSGEEKILFIEDSRLNVSLKHIKGARFSMIQHTNPQLFFSTNFFVESKAIPFVFDQNEIRVIKLIDYKGSFLFQ
>NZ_CP041022.1|WP_004151282.1|1222045_1222294_+|hypothetical-protein
MKMPDKIFSAASYCTSGGLICTGLARTYDWFHGLDWNFIALASGVIIGVATYLTNLYFKRRWTKMYQQSLDRGYGGPPPQDE
>NZ_CP041022.1|WP_023313519.1|1222296_1222836_+|lysozyme
MANLKTKLSAAMLALIAAGASAPVLMDEFLNEKEGNSLTSYRDGAGIWTICRGATRVDGRPVTQGMKLTQAKCDQVNAVERNKALAWVDQNIKVPLTPPQKVGIASFCPYNIGPGKCFPSTFYKRINAGDRKGACEAIRWWIKDGGRDCRLTKGKKSGCYGQVERRDQESALACWGIDE
>NZ_CP041022.1|WP_023313518.1|1222832_1223300_+|lysis-protein
MSRLAAINSAVVICLIVSLGWLASHYHDNATEFKRQRDEKVKALNLANETITDMTTRQRDVAALDAKYTKELADAKAENDALQRKLDNGGRVLVKGKCPVSASTQTAGAASMGDDATVELSAVAGRNVLGIRSGIISDQTALRALQDYIHTQCLR
>NZ_CP041022.1|WP_019705419.1|1223330_1223546_-|KTSC-domain-containing-protein
MNRQPVSSSNLHSVGYDHATSTLEIAFHSGGIYQYSRVPSTVYTALMNASSKGQYFDAHIKKAGYPYRKVG
>NZ_CP041022.1|WP_012967895.1|1223727_1223910_-|hypothetical-protein
MKQILFTWFAFTNTYACITASINVNNSLMLNSAVPWIVGVSLGVITNYLLAKKLKESGFL

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Crispr_ID: NZ_CP041022_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041022_2

4312747-4312875

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041022_2

>merge|NZ_CP041022|2|4312747-4312875|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>NZ_CP041022|2|2|4312747-4312875|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041022.1\|WP_002889722.1\|4312913_4313129_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP041022.1\|WP_004177337.1\|4316388_4317627_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
NZ_CP041022.1\|WP_002889696.1\|4320096_4320864_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_CP041022.1\|WP_004145825.1\|4320938_4321520_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP041022.1\|WP_002889716.1\|4314970_4315609_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP041022.1\|WP_004177332.1\|4306138_4306537_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP041022.1\|WP_004177333.1\|4310160_4310613_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP041022.1\|WP_002889699.1\|4319385_4320126_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP041022.1\|WP_004177331.1\|4305360_4306053_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_CP041022.1\|WP_002889795.1\|4303914_4305315_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_CP041022.1\|WP_004177334.1\|4311830_4312691_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_CP041022.1\|WP_004177336.1\|4315601_4316396_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP041022.1\|WP_004177335.1\|4314367_4314964_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP041022.1\|WP_002889720.1\|4313131_4314355_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP041022.1\|WP_002889733.1\|4307944_4308403_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP041022.1\|WP_002889726.1\|4310615_4311671_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP041022.1\|WP_040249722.1\|4306594_4307839_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP041022.1\|WP_004152033.1\|4308660_4310118_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP041022.1\|WP_002889702.1\|4317630_4318974_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP041022.1\|WP_032410124.1\|4302481_4303765_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149

Protein	Function_ID	Function_description	E-value
NZ_CP041022.1\|WP_002889722.1\|4312913_4313129_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_CP041022.1\|WP_004177337.1\|4316388_4317627_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NZ_CP041022.1\|WP_002889696.1\|4320096_4320864_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_CP041022.1\|WP_004145825.1\|4320938_4321520_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_CP041022.1\|WP_002889716.1\|4314970_4315609_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_CP041022.1\|WP_004177332.1\|4306138_4306537_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_CP041022.1\|WP_004177333.1\|4310160_4310613_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.34846e-84
NZ_CP041022.1\|WP_002889699.1\|4319385_4320126_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_CP041022.1\|WP_004177331.1\|4305360_4306053_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
NZ_CP041022.1\|WP_002889795.1\|4303914_4305315_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_CP041022.1\|WP_004177334.1\|4311830_4312691_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
NZ_CP041022.1\|WP_004177336.1\|4315601_4316396_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_CP041022.1\|WP_004177335.1\|4314367_4314964_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_CP041022.1\|WP_002889720.1\|4313131_4314355_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP041022.1\|WP_002889733.1\|4307944_4308403_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_CP041022.1\|WP_002889726.1\|4310615_4311671_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP041022.1\|WP_040249722.1\|4306594_4307839_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP041022.1\|WP_004152033.1\|4308660_4310118_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP041022.1\|WP_002889702.1\|4317630_4318974_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP041022.1\|WP_032410124.1\|4302481_4303765_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0

>NZ_CP041022.1|WP_004177334.1|4311830_4312691_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>NZ_CP041022.1|WP_002889726.1|4310615_4311671_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_CP041022.1|WP_004177333.1|4310160_4310613_-|GNAT-family-N-acetyltransferase
MHILAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_CP041022.1|WP_004152033.1|4308660_4310118_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_CP041022.1|WP_002889733.1|4307944_4308403_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_CP041022.1|WP_040249722.1|4306594_4307839_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTISGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_CP041022.1|WP_004177332.1|4306138_4306537_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_CP041022.1|WP_004177331.1|4305360_4306053_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_CP041022.1|WP_002889795.1|4303914_4305315_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>NZ_CP041022.1|WP_032410124.1|4302481_4303765_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGAEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>NZ_CP041022.1|WP_002889722.1|4312913_4313129_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_CP041022.1|WP_002889720.1|4313131_4314355_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_CP041022.1|WP_004177335.1|4314367_4314964_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_CP041022.1|WP_002889716.1|4314970_4315609_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_CP041022.1|WP_004177336.1|4315601_4316396_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_CP041022.1|WP_004177337.1|4316388_4317627_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRSAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_CP041022.1|WP_002889702.1|4317630_4318974_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_CP041022.1|WP_002889699.1|4319385_4320126_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_CP041022.1|WP_002889696.1|4320096_4320864_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_CP041022.1|WP_004145825.1|4320938_4321520_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041022_1	1.1\|1216621\|37\|NZ_CP041022\|CRISPRCasFinder	1216621-1216657	37	MH178096	Aeromonas phage AsXd-1, complete genome	10850-10886	5	0.865

1. spacer 1.1|1216621|37|NZ_CP041022|CRISPRCasFinder matches to MH178096 (Aeromonas phage AsXd-1, complete genome) position: , mismatch: 5, identity: 0.865

aatcgttcactacctggtgcaggagattcactacctg	CRISPR spacer
aatcgttcactacctggtgcagcagattcaccccgta	Protospacer
********************** ********. * *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

665577 : 703310

Escherichia_phage(28.95%)

plate,portal,capsid,tail,tRNA,holin,head,integrase,lysis,terminase

attL 665450:665464|attR 672999:673013

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
665450:665464	attL	NA	NA	NA	NA
WP_032440347.1\|665577_666579_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-191	98.2
WP_015959031.1\|666578_667154_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	5.2e-60	58.7
WP_001630878.1\|667283_667547_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
WP_047669828.1\|667577_668087_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	7.5e-87	95.3
WP_065876412.1\|668094_668295_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	5.6e-30	93.9
WP_015959029.1\|668258_668597_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	1.6e-53	93.8
WP_032433641.1\|668664_668892_+	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	2.6e-31	97.3
WP_117980290.1\|668891_669113_+	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	1.5e-31	90.4
WP_117980289.1\|669114_671334_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	90.0
WP_117980288.1\|671448_671889_+	DinI family protein	A0A218M4I0	Erwinia_phage	7.0e-57	79.6
WP_077259525.1\|672025_672646_+	hypothetical protein	NA	NA	NA	NA
WP_117980287.1\|672657_673689_+	hypothetical protein	NA	NA	NA	NA
672999:673013	attR	NA	NA	NA	NA
WP_004195876.1\|674129_675173_-\|portal	phage portal protein	M1SV64	Escherichia_phage	6.8e-167	82.4
WP_117980286.1\|675172_676942_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	3.1e-305	87.8
WP_032435918.1\|677107_677962_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	1.6e-126	81.0
WP_023343321.1\|678035_679094_+\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	1.1e-164	83.8
WP_032435917.1\|679097_679841_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.0e-100	80.7
WP_025710538.1\|679937_680444_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	5.4e-61	84.3
WP_019725382.1\|680443_680647_+\|tail	tail protein	S4TTA0	Salmonella_phage	9.5e-25	79.1
WP_019725381.1\|680651_680942_+\|holin	holin	A0A0M5M1H1	Salmonella_phage	5.0e-35	79.6
WP_032435915.1\|680928_681426_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	4.3e-79	86.4
WP_032435914.1\|681422_681854_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.6e-40	64.7
WP_023323002.1\|681949_682417_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	8.2e-64	74.8
WP_032435912.1\|682409_682859_+	phage virion morphogenesis protein	O80313	Escherichia_phage	5.5e-49	68.0
WP_117132908.1\|682927_683569_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	4.1e-90	77.0
WP_040174448.1\|683565_683913_+\|plate	baseplate assembly protein	Q7Y4D7	Escherichia_virus	2.8e-45	78.3
WP_023317715.1\|683917_684826_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.0e-114	71.9
WP_032435909.1\|684818_685421_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-53	58.1
WP_117980283.1\|685422_687741_+	hypothetical protein	NA	NA	NA	NA
WP_135717633.1\|687749_688520_+	hypothetical protein	NA	NA	NA	NA
WP_040227704.1\|688527_688737_+	hypothetical protein	NA	NA	NA	NA
WP_040227705.1\|688742_689816_+\|tail	phage tail protein	Q37842	Escherichia_phage	8.3e-35	50.6
WP_064168934.1\|689925_691107_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	6.0e-196	86.6
WP_014343412.1\|691120_691636_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-69	75.6
WP_004195711.1\|691695_691971_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
WP_015959005.1\|691985_692123_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.2e-17	91.1
WP_117980282.1\|692115_694554_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.8e-288	72.0
WP_117023258.1\|695048_696209_+	phage late control D family protein	Q7Y4C6	Escherichia_virus	2.4e-173	80.4
WP_117980281.1\|696249_696657_-	hypothetical protein	S4TTB4	Salmonella_phage	5.4e-27	44.3
WP_023343301.1\|696750_696969_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	3.2e-34	88.9
WP_002917636.1\|697326_697833_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_004144518.1\|697932_699768_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_004149864.1\|699986_701732_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.6e-75	38.7
WP_001144069.1\|701843_702059_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_004900709.1\|702296_703310_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	59.2

DBSCAN-SWA_2

1184928 : 1293239

113

Enterobacteria_phage(27.45%)

portal,transposase,capsid,tail,tRNA,head,integrase,lysis,terminase,protease

attL 1200307:1200323|attR 1286781:1286797

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213850.1\|1184928_1185852_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_002914261.1\|1186235_1186904_-	molecular chaperone	NA	NA	NA	NA
WP_002914260.1\|1186945_1187494_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_004218900.1\|1187597_1188215_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020803748.1\|1188568_1189417_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_020803766.1\|1189472_1190093_-	hypothetical protein	NA	NA	NA	NA
WP_020803765.1\|1191102_1192035_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_004899997.1\|1192040_1192769_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_012967389.1\|1192769_1194290_-	amino acid ABC transporter permease/ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.2e-17	28.8
WP_020803761.1\|1194320_1195124_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020803746.1\|1195143_1196211_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_020803767.1\|1196207_1197071_-	TIM barrel protein	NA	NA	NA	NA
WP_004145693.1\|1197081_1198032_-	agmatinase	NA	NA	NA	NA
WP_002914199.1\|1198147_1199059_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000888203.1\|1199457_1199937_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_004174783.1\|1200006_1203159_-	multidrug efflux RND transporter permease subunit OqxB5	NA	NA	NA	NA
1200307:1200323	attL	NA	NA	NA	NA
WP_020803752.1\|1203182_1204358_-	multidrug efflux RND transporter periplasmic adaptor subunit OqxA	NA	NA	NA	NA
WP_085783913.1\|1204691_1205054_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004212922.1\|1205064_1205637_-	flavin oxidoreductase	NA	NA	NA	NA
WP_020803747.1\|1205848_1206733_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004180956.1\|1206857_1207658_+	hypothetical protein	NA	NA	NA	NA
WP_032422783.1\|1208127_1209039_+	hypothetical protein	NA	NA	NA	NA
WP_032422782.1\|1209043_1209370_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_046622185.1\|1209415_1210039_+	hypothetical protein	NA	NA	NA	NA
WP_046622135.1\|1210045_1211221_-\|integrase	site-specific integrase	I6PDJ1	Cronobacter_phage	7.1e-205	91.5
WP_046622137.1\|1211175_1211388_-	hypothetical protein	I6PBM8	Cronobacter_phage	1.2e-25	76.1
WP_046622139.1\|1211506_1212025_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	9.7e-90	91.9
WP_031592550.1\|1212065_1212506_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	1.5e-62	83.6
WP_020948182.1\|1212502_1212721_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	3.3e-31	94.4
WP_046622147.1\|1212692_1212947_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.0e-36	88.1
WP_023304721.1\|1212939_1213305_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	5.8e-57	97.5
WP_004177202.1\|1213305_1213530_-	hypothetical protein	NA	NA	NA	NA
WP_023313530.1\|1213712_1214126_-	hypothetical protein	NA	NA	NA	NA
WP_023313529.1\|1214289_1214964_-	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	1.9e-98	78.1
WP_071646927.1\|1215104_1215338_+	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	2.2e-17	63.9
WP_023313528.1\|1215339_1216101_+	hypothetical protein	NA	NA	NA	NA
WP_032409529.1\|1216141_1216330_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_042632475.1\|1216326_1217157_+	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	1.7e-72	63.2
WP_148865096.1\|1217168_1218062_+	ATP-binding protein	Q8W641	Enterobacteria_phage	6.6e-86	63.8
WP_023313524.1\|1219407_1219776_+	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	2.7e-38	60.3
WP_023313522.1\|1219857_1220331_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	7.0e-79	88.5
WP_023313521.1\|1220327_1221110_+	antitermination protein	F1C595	Cronobacter_phage	8.0e-112	76.7
WP_052749781.1\|1221328_1221877_+	hypothetical protein	NA	NA	NA	NA
WP_004151282.1\|1222045_1222294_+	hypothetical protein	NA	NA	NA	NA
WP_023313519.1\|1222296_1222836_+	lysozyme	H6WRZ4	Salmonella_phage	8.0e-87	82.0
WP_023313518.1\|1222832_1223300_+\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.4e-55	72.9
WP_019705419.1\|1223330_1223546_-	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	2.0e-12	54.3
WP_012967895.1\|1223727_1223910_-	hypothetical protein	NA	NA	NA	NA
WP_023313517.1\|1223995_1224289_+	hypothetical protein	G8C7W3	Escherichia_phage	2.2e-30	70.1
WP_023313516.1\|1224637_1224868_+	hypothetical protein	NA	NA	NA	NA
WP_019705415.1\|1224977_1225223_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	2.1e-34	97.5
WP_019705414.1\|1225278_1225620_+	HNH endonuclease	K7P7P4	Enterobacteria_phage	3.0e-47	74.8
WP_004177162.1\|1225802_1226267_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	3.7e-48	61.4
WP_073511340.1\|1226220_1227963_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.0e-139	45.2
WP_046622163.1\|1227962_1229270_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.0e-213	84.8
WP_046622166.1\|1229283_1230138_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	2.7e-137	89.8
WP_019705410.1\|1230148_1231366_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.8e-204	91.1
WP_046622191.1\|1231677_1232004_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	4.7e-42	69.4
WP_046622193.1\|1232015_1232354_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.6e-40	73.2
WP_040088856.1\|1232350_1232800_+	hypothetical protein	Q9MCS9	Enterobacteria_phage	6.1e-64	83.9
WP_046622197.1\|1232796_1233144_+	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	6.4e-29	60.2
WP_046622199.1\|1233200_1233905_+	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	1.6e-79	66.1
WP_148830142.1\|1233935_1234340_+\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	4.2e-32	55.4
WP_065802197.1\|1234342_1234648_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	7.3e-29	65.0
WP_094936090.1\|1234700_1235579_+	hypothetical protein	NA	NA	NA	NA
WP_094936089.1\|1235641_1238992_+\|tail	phage tail tape measure protein	K7PKG1	Enterobacteria_phage	1.4e-226	50.0
WP_004177132.1\|1239013_1239487_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.4e-55	62.1
WP_021441639.1\|1239473_1239950_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.7e-51	65.8
WP_040181864.1\|1239962_1240343_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.5e-58	81.0
WP_065802093.1\|1240339_1243417_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	61.6
WP_085851070.1\|1243492_1246219_+	hypothetical protein	A0A0S1S5D9	Klebsiella_phage	5.4e-240	53.5
WP_148865097.1\|1246227_1247127_+	hypothetical protein	A0A0S1S106	Klebsiella_phage	1.6e-92	64.4
WP_064278116.1\|1247118_1247901_-	hypothetical protein	A0A2H4YHE3	Raoultella_phage	4.6e-19	30.9
WP_094936088.1\|1247890_1250083_-	hypothetical protein	A0A2H4YH15	Raoultella_phage	5.9e-96	40.5
WP_073511357.1\|1250174_1250753_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	2.2e-90	93.4
WP_004892499.1\|1250803_1251226_+	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
WP_023313495.1\|1251633_1251882_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	69.1
WP_002914164.1\|1252658_1253141_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_029497287.1\|1253251_1253728_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_004145682.1\|1253717_1254008_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1254073_1254415_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004174799.1\|1254562_1256224_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1256310_1257189_-	NAD(+) kinase	NA	NA	NA	NA
WP_004174800.1\|1257313_1257904_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004174801.1\|1258023_1259310_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1259329_1260121_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1260284_1261649_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1261908_1262157_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1262175_1262724_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1262755_1263523_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002914145.1\|1263562_1263910_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_004174802.1\|1264029_1264488_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_004174803.1\|1264544_1265915_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_004145671.1\|1265923_1266406_-	OmpA family protein	NA	NA	NA	NA
WP_002914116.1\|1266419_1267643_-	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_004174804.1\|1267635_1268145_-	YfiR family protein	NA	NA	NA	NA
WP_002914114.1\|1268487_1269558_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
WP_004212948.1\|1269567_1270689_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_004174805.1\|1270751_1271624_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_004150975.1\|1271620_1272781_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_100250063.1\|1272881_1272929_-	hypothetical protein	NA	NA	NA	NA
WP_002914111.1\|1273035_1273371_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_032435923.1\|1273641_1274379_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002914110.1\|1274510_1275491_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_004212956.1\|1275487_1276219_+	polyphenol oxidase	NA	NA	NA	NA
WP_004150973.1\|1276348_1278922_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
WP_004144368.1\|1284927_1286226_+	MFS transporter	Q6JIH2	Burkholderia_virus	4.1e-44	31.5
WP_020803929.1\|1286229_1286553_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_004180947.1\|1286594_1287950_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
1286781:1286797	attR	NA	NA	NA	NA
WP_004149373.1\|1288070_1290722_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_002914092.1\|1290756_1291455_-	DTW domain-containing protein	NA	NA	NA	NA
WP_002914091.1\|1291524_1291950_-	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
WP_002914089.1\|1292153_1293239_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1710346 : 1717251

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1710346_1711210_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_004180550.1\|1711220_1711994_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_032410857.1\|1712234_1713128_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1713373_1714735_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1715053_1715776_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_020804258.1\|1715772_1717251_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	27.9

DBSCAN-SWA_4

2802563 : 2813451

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020805006.1\|2802563_2805671_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_032436142.1\|2805725_2806991_+	MFS transporter	NA	NA	NA	NA
WP_020805010.1\|2807021_2808110_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.8e-210	99.7
WP_004176262.1\|2808196_2808457_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_004176269.1\|2808754_2809615_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2809635_2810397_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|2810387_2810621_+	hypothetical protein	NA	NA	NA	NA
WP_032410308.1\|2810658_2811561_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.8e-158	99.3
WP_004183946.1\|2811572_2812838_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.3
WP_002210516.1\|2812830_2813451_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_5

3193734 : 3284976

Klebsiella_phage(52.5%)

portal,transposase,capsid,tail,tRNA,head,integrase,terminase

attL 3186354:3186371|attR 3293241:3293258

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3186354:3186371	attL	NA	NA	NA	NA
WP_002901088.1\|3193734_3194235_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3194351_3194798_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3194781_3195573_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004148041.1\|3195673_3196858_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_020804434.1\|3196889_3197582_-	CTP synthase	NA	NA	NA	NA
WP_004176547.1\|3197727_3198237_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3198223_3198580_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004176548.1\|3198569_3198809_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004176549.1\|3199108_3200122_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.9e-12	29.0
WP_004150782.1\|3200179_3200281_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004213093.1\|3200280_3200355_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3200472_3200598_+	hypothetical protein	NA	NA	NA	NA
WP_004150783.1\|3201049_3201688_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3201777_3202692_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_019705576.1\|3203353_3204397_-	type II asparaginase	NA	NA	NA	NA
WP_004140494.1\|3204699_3205908_+	HD domain-containing protein	NA	NA	NA	NA
WP_004213090.1\|3205980_3207765_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3207771_3208662_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3208782_3210291_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3210601_3211288_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3211685_3211865_-	hypothetical protein	NA	NA	NA	NA
WP_020804935.1\|3211904_3212537_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3213115_3213313_+	hypothetical protein	NA	NA	NA	NA
WP_004183659.1\|3213428_3214439_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140511.1\|3214435_3215842_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3215897_3216785_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3216801_3217308_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004148027.1\|3217334_3217829_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3217919_3218105_-	general stress protein	NA	NA	NA	NA
WP_021462619.1\|3218726_3219920_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3220032_3220260_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004224175.1\|3220286_3220466_-	hypothetical protein	NA	NA	NA	NA
WP_004150797.1\|3220708_3221032_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3221024_3221417_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3221413_3222127_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3222399_3222552_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_014228924.1\|3222872_3223196_-	hypothetical protein	NA	NA	NA	NA
WP_064151296.1\|3223201_3223894_-	EAL domain-containing protein	NA	NA	NA	NA
WP_148830166.1\|3224248_3225307_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-14	31.7
WP_014907806.1\|3225729_3227157_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	3.0e-101	55.5
WP_138920456.1\|3227218_3238435_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.4
WP_014228919.1\|3238497_3239109_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	5.3e-71	72.5
WP_021462612.1\|3239124_3239475_-	hypothetical protein	NA	NA	NA	NA
WP_017880253.1\|3239506_3240217_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	8.5e-137	90.3
WP_023289191.1\|3240218_3240974_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
WP_075917540.1\|3240970_3241309_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	7.0e-57	87.5
WP_094936114.1\|3241308_3244644_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.4
WP_071603425.1\|3244643_3244856_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
WP_014228914.1\|3244876_3245242_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_014228913.1\|3245299_3245761_-\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_094936113.1\|3245792_3246146_-	hypothetical protein	Q6UAX1	Klebsiella_phage	7.9e-51	82.0
WP_017880258.1\|3246142_3246532_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_094936112.1\|3246512_3246851_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	1.2e-53	90.2
WP_032439854.1\|3246847_3247165_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014228908.1\|3247145_3247406_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.6e-21	60.5
WP_014228907.1\|3247464_3248751_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-216	89.3
WP_032439853.1\|3248828_3249749_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.4e-147	87.9
WP_094936111.1\|3249785_3251045_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.4e-222	89.8
WP_094936110.1\|3251044_3251224_-	hypothetical protein	Q6UAX9	Klebsiella_phage	1.7e-09	55.9
WP_094936109.1\|3251217_3252939_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.6e-189	57.2
WP_012542168.1\|3252938_3253373_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_023289184.1\|3253620_3254052_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.1e-41	62.0
WP_023289183.1\|3254048_3254372_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3254323_3254686_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_023289182.1\|3255012_3255237_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3255275_3255713_-	hypothetical protein	NA	NA	NA	NA
WP_085956072.1\|3256539_3257659_+\|transposase	IS3-like element ISKpn34 family transposase	S5WIU1	Leptospira_phage	1.5e-50	43.3
WP_109233370.1\|3257721_3257871_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	1.7e-10	67.4
WP_109233369.1\|3257870_3258791_+	FRG domain-containing protein	NA	NA	NA	NA
WP_004213850.1\|3259077_3260001_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_004213850.1\|3261308_3262232_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_114265703.1\|3262502_3263864_+	nucleotidyltransferase	NA	NA	NA	NA
WP_094936102.1\|3263869_3264451_+	SLATT domain-containing protein	NA	NA	NA	NA
WP_094936101.1\|3264653_3265094_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_017898971.1\|3265107_3265572_-	Replication protein 14	A0A0U2JGJ0	Escherichia_phage	3.1e-63	71.5
WP_094936100.1\|3265564_3266548_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.5e-43	55.2
WP_094936099.1\|3266599_3267154_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|3267156_3267372_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_094936098.1\|3267473_3267863_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.1e-34	60.2
WP_072041890.1\|3268705_3268900_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3268942_3269287_+	transcriptional regulator	NA	NA	NA	NA
WP_094936097.1\|3269428_3271567_+	exonuclease	S4TNL0	Salmonella_phage	4.7e-98	41.9
WP_012542206.1\|3271619_3271865_+	excisionase	NA	NA	NA	NA
WP_040203304.1\|3271845_3272973_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	3.3e-119	58.4
WP_004150800.1\|3273090_3274341_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_004150801.1\|3274581_3275232_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_094936096.1\|3275248_3275707_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3275763_3276870_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004140557.1\|3276924_3277566_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_004176557.1\|3277569_3278940_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	45.3
WP_015958193.1\|3278994_3279357_-	cupin domain-containing protein	NA	NA	NA	NA
WP_032410214.1\|3279440_3280247_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004150807.1\|3280530_3281202_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_004147969.1\|3281201_3282668_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_004176560.1\|3282753_3283875_+	cupin domain-containing protein	NA	NA	NA	NA
WP_004190938.1\|3284484_3284976_-\|transposase	transposase	NA	NA	NA	NA
3293241:3293258	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3534418 : 3543882

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004209699.1\|3534418_3536140_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3536184_3536886_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3537239_3537458_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3537578_3539858_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3539888_3540206_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3540531_3540753_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3540829_3542770_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3542766_3543882_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_7

4020905 : 4074898

Cronobacter_phage(21.28%)

tRNA,head,coat,integrase,lysis,terminase,protease

attL 4016650:4016695|attR 4062145:4062190

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4016650:4016695	attL	NA	NA	NA	NA
WP_148830176.1\|4020905_4023383_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.0e-197	45.4
WP_148830177.1\|4023369_4023765_-	hypothetical protein	F1C5F2	Cronobacter_phage	3.3e-37	56.3
WP_004199076.1\|4023761_4024232_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_016531189.1\|4024231_4024651_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	47.8
WP_148865102.1\|4024750_4028218_-	tape measure protein	Q5G8W8	Enterobacteria_phage	3.6e-156	46.0
WP_148830178.1\|4028284_4028983_-	hypothetical protein	NA	NA	NA	NA
WP_032443148.1\|4029134_4029551_-	toxin YafO type II toxin-antitoxin system family protein	NA	NA	NA	NA
WP_004178856.1\|4029552_4030125_-	hypothetical protein	NA	NA	NA	NA
WP_004178855.1\|4030440_4031124_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.3e-75	59.7
WP_023301680.1\|4031176_4031929_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.7e-42	42.2
WP_040229586.1\|4031997_4032390_-	hypothetical protein	G0ZNE4	Cronobacter_phage	3.9e-35	52.7
WP_004151265.1\|4032386_4032812_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_068987102.1\|4032814_4033177_-	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	9.6e-20	48.3
WP_148830179.1\|4033176_4033350_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_004178849.1\|4033349_4033730_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.4e-29	56.1
WP_029884066.1\|4033732_4033972_-	hypothetical protein	NA	NA	NA	NA
WP_040027496.1\|4034004_4035060_-\|coat	phage coat protein	A0A291AXD4	Shigella_phage	2.2e-101	53.2
WP_016529582.1\|4035056_4035518_-	hypothetical protein	B1GS72	Salmonella_phage	5.0e-29	50.3
WP_023341853.1\|4035517_4036873_-	hypothetical protein	F1C5D9	Cronobacter_phage	2.8e-128	52.6
WP_050584144.1\|4036895_4037240_+	hypothetical protein	NA	NA	NA	NA
WP_148830180.1\|4037240_4038251_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-114	68.7
WP_094819352.1\|4038183_4039653_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.5e-159	62.5
WP_042935444.1\|4039663_4041226_-\|terminase	terminase	G8C7P3	Escherichia_phage	2.0e-303	92.9
WP_148830181.1\|4041222_4041873_-	hypothetical protein	G8C7P2	Escherichia_phage	3.1e-101	88.4
WP_004178838.1\|4042243_4042573_+	hypothetical protein	NA	NA	NA	NA
WP_148830182.1\|4042678_4043143_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.8e-55	73.2
WP_117090884.1\|4043139_4043643_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	3.2e-74	77.8
WP_004146347.1\|4043645_4043960_-	hypothetical protein	H6WRZ3	Salmonella_phage	6.3e-44	86.1
WP_148830183.1\|4045040_4045730_-	antiterminator	I6PDF8	Cronobacter_phage	1.2e-63	56.7
WP_023301665.1\|4045726_4045867_-	YlcG family protein	NA	NA	NA	NA
WP_032442356.1\|4045863_4046502_-	bacteriophage Lambda NinG protein	H6WRY9	Salmonella_phage	2.4e-74	68.9
WP_148830184.1\|4046494_4046665_-	NinE family protein	G8C7V4	Escherichia_phage	8.2e-14	69.6
WP_064151812.1\|4046670_4047267_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-56	53.8
WP_109026969.1\|4047424_4047628_-	hypothetical protein	NA	NA	NA	NA
WP_148830185.1\|4048592_4048973_-	HNH endonuclease	K7P7B7	Enterobacteria_phage	2.3e-64	94.4
WP_148830186.1\|4049449_4049725_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.0e-29	76.8
WP_148830187.1\|4049721_4050132_-	hypothetical protein	R9TME7	Aeromonas_phage	1.9e-16	44.5
WP_004218528.1\|4050128_4050431_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_023304896.1\|4050430_4051207_-	hypothetical protein	A0A193GYX1	Enterobacter_phage	2.3e-95	65.4
WP_065520981.1\|4051203_4051932_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	4.2e-38	72.6
WP_001548453.1\|4052065_4052287_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_016831912.1\|4052326_4052554_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	3.3e-18	61.2
WP_040227061.1\|4052622_4053345_+	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	5.5e-75	63.2
WP_004178801.1\|4053367_4053487_+	hypothetical protein	NA	NA	NA	NA
WP_032434121.1\|4053685_4054402_+	hypothetical protein	NA	NA	NA	NA
WP_032434120.1\|4054392_4054938_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_008807814.1\|4055449_4055656_+	phage encoded cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
WP_148830188.1\|4055736_4056708_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	2.3e-39	77.7
WP_032431540.1\|4056715_4057000_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.5e-39	79.8
WP_008807812.1\|4057016_4057763_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	3.1e-65	67.7
WP_008807811.1\|4057759_4058383_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	9.0e-58	59.7
WP_148830189.1\|4058411_4058939_+	phage N-6-adenine-methyltransferase	G8EYI1	Enterobacteria_phage	4.2e-56	61.6
WP_148830190.1\|4058935_4059157_+	hypothetical protein	NA	NA	NA	NA
WP_148830191.1\|4059042_4059660_+	HNH endonuclease	A0A1W6DY33	Salmonella_phage	6.0e-38	47.0
WP_040173672.1\|4059656_4059848_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	3.5e-13	62.7
WP_085858690.1\|4059844_4060066_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	1.4e-13	51.4
WP_115656171.1\|4060103_4060727_+	AP2/ERF family transcription factor	A0A2I7R856	Vibrio_phage	1.1e-36	48.6
WP_004151317.1\|4060754_4061090_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_021441323.1\|4060966_4062130_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.9e-203	87.1
WP_004143017.1\|4062560_4063427_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4062145:4062190	attR	NA	NA	NA	NA
WP_004143016.1\|4063428_4063641_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_020803895.1\|4063686_4065072_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004151319.1\|4065247_4065742_+	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_004893764.1\|4065745_4066468_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_020803889.1\|4066575_4066914_+	hypothetical protein	NA	NA	NA	NA
WP_004893772.1\|4067010_4067520_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_004143002.1\|4067516_4068584_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_004151323.1\|4068695_4069772_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_004142997.1\|4069879_4071025_-	porin	NA	NA	NA	NA
WP_004177220.1\|4071206_4073621_-	ABC transporter permease	NA	NA	NA	NA
WP_004151324.1\|4073617_4074304_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-31	35.7
WP_002892267.1\|4074271_4074898_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041022

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection