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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041997 Escherichia coli strain AR Bank #0349 plasmid pAR349, complete sequence 0 crisprs csa3 0 0 4 0
NZ_CP041996 Escherichia coli strain AR Bank #0349 chromosome, complete genome 2 crisprs cas3,csa3,PD-DExK,c2c9_V-U4,DEDDh,DinG 0 4 9 0

Results visualization

1. NZ_CP041997
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7170 : 45277 31 Salmonella_phage(30.77%) transposase,integrase NA
DBSCAN-SWA_2 99547 : 145093 51 Escherichia_phage(23.08%) transposase,integrase,protease attL 94496:94509|attR 107013:107026
DBSCAN-SWA_3 148431 : 189020 43 Escherichia_phage(53.85%) transposase,protease NA
DBSCAN-SWA_4 257155 : 268636 14 Macacine_betaherpesvirus(33.33%) transposase,integrase,protease attL 245087:245103|attR 275952:275968
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP041996
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041996_1 3543150-3543263 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041996_2 4055658-4055790 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041996_1 1.2|3543220|25|NZ_CP041996|PILER-CR 3543220-3543244 25 NC_049946 Escherichia virus Lambda_4A7 genome assembly, chromosome: 1 37604-37628 0 1.0
NZ_CP041996_1 1.2|3543220|25|NZ_CP041996|PILER-CR 3543220-3543244 25 LR595861 Escherichia virus Lambda_4C10 genome assembly, chromosome: 1 37887-37911 0 1.0
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 NC_049946 Escherichia virus Lambda_4A7 genome assembly, chromosome: 1 37652-37675 1 0.958
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 LR595861 Escherichia virus Lambda_4C10 genome assembly, chromosome: 1 37935-37958 1 0.958
NZ_CP041996_1 1.2|3543220|25|NZ_CP041996|PILER-CR 3543220-3543244 25 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 44524-44548 1 0.96
NZ_CP041996_2 2.1|4055675|42|NZ_CP041996|PILER-CR 4055675-4055716 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 1 0.976
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 44572-44595 2 0.917
NZ_CP041996_2 2.2|4055734|40|NZ_CP041996|PILER-CR 4055734-4055773 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 2 0.95
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 NC_049946 Escherichia virus Lambda_4A7 genome assembly, chromosome: 1 37675-37698 3 0.875
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 LR595861 Escherichia virus Lambda_4C10 genome assembly, chromosome: 1 37958-37981 3 0.875
NZ_CP041996_1 1.1|3543173|24|NZ_CP041996|PILER-CR 3543173-3543196 24 MT661596 Proteus phage 10, complete genome 116931-116954 3 0.875
NZ_CP041996_1 1.2|3543220|25|NZ_CP041996|PILER-CR 3543220-3543244 25 NZ_CP015341 Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence 35661-35685 4 0.84

1. spacer 1.2|3543220|25|NZ_CP041996|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

2. spacer 1.2|3543220|25|NZ_CP041996|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

3. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.958

cgtctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
**.*********************

4. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 1, identity: 0.958

cgtctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
**.*********************

5. spacer 1.2|3543220|25|NZ_CP041996|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

6. spacer 2.1|4055675|42|NZ_CP041996|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

7. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 2, identity: 0.917

cgtctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.*.*********************

8. spacer 2.2|4055734|40|NZ_CP041996|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

9. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtgtttacctgattcgggtaaac	Protospacer
.** ***********.********

10. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtgtttacctgattcgggtaaac	Protospacer
.** ***********.********

11. spacer 1.1|3543173|24|NZ_CP041996|PILER-CR matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 3, identity: 0.875

cgtctttacctgatttgggtaaac	CRISPR spacer
tgtctgtacctgaattgggtaaac	Protospacer
.**** ******* **********

12. spacer 1.2|3543220|25|NZ_CP041996|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 98903 : 103557 7 Stx2-converting_phage(50.0%) transposase NA
DBSCAN-SWA_2 1109704 : 1199913 102 Burkholderia_virus(37.5%) tail,plate,tRNA,head,transposase,integrase attL 1112359:1112374|attR 1161188:1161203
DBSCAN-SWA_3 1576789 : 1589717 6 Escherichia_phage(83.33%) integrase attL 1571750:1571763|attR 1578889:1578902
DBSCAN-SWA_4 2886921 : 2932324 45 Ralstonia_phage(20.0%) transposase,integrase,plate attL 2900847:2900861|attR 2911382:2911396
DBSCAN-SWA_5 2958069 : 2968727 11 uncultured_Caudovirales_phage(33.33%) transposase,integrase attL 2957826:2957885|attR 2975138:2975219
DBSCAN-SWA_6 3015859 : 3027117 10 Acanthocystis_turfacea_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_7 3139257 : 3148699 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_8 3503509 : 3551752 67 Enterobacteria_phage(50.0%) tail,protease,lysis,terminase,head,capsid,integrase,holin,portal attL 3503041:3503087|attR 3551766:3551812
DBSCAN-SWA_9 4547499 : 4592888 46 Burkholderia_phage(31.58%) tRNA,tail,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage