CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	14 crisprs	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	8	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042813_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_1

342239-342328

Orphan

Consensus_repeat	Method
TTTTGACACGGACGTCAAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_1

>merge|NZ_CP042813|1|342239-342328|CRISPRCasFinder
TTTTGACACGGACGTCAAAAACTCAGAACCGCCACGGATGGCGGTGGTTCCAAGCAGACGGTTTAGTTTTTGACACGGACGTCAAAAACT

>NZ_CP042813|1|1|342239-342328|CRISPRCasFinder
TTTTGACACGGACGTCAAAAACT	CAGAACCGCCACGGATGGCGGTGGTTCCAAGCAGACGGTTTAGT
TTTTGACACGGACGTCAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024753001.1\|332832_333051_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP042813.1\|WP_024752213.1\|352685_353924_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP042813.1\|WP_024752996.1\|339044_339812_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|349976
NZ_CP042813.1\|WP_148878587.1\|359343_359856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024753000.1\|333204_333567_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224648
NZ_CP042813.1\|WP_148878581.1\|332296_332827_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|236757
NZ_CP042813.1\|WP_002698061.1\|356477_357482_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP042813.1\|WP_024752997.1\|337421_338429_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|273196
NZ_CP042813.1\|WP_148878582.1\|333595_334960_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP042813.1\|WP_024752995.1\|339815_341222_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP042813.1\|WP_044634937.1\|347064_348795_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_148878585.1\|344708_345311_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP042813.1\|WP_002695411.1\|331613_332300_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|239786
NZ_CP042813.1\|WP_148878583.1\|335035_335551_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214644
NZ_CP042813.1\|WP_148878584.1\|342381_343887_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|180842
NZ_CP042813.1\|WP_044634938.1\|345349_347065_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_148883881.1\|354688_355441_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP042813.1\|WP_024752998.1\|335553_337422_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP042813.1\|WP_148883880.1\|352247_352433_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752211.1\|355437_356481_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024753001.1\|332832_333051_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	3.03039e-44
NZ_CP042813.1\|WP_024752213.1\|352685_353924_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	4.04346e-35
NZ_CP042813.1\|WP_024752996.1\|339044_339812_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.81608e-67
NZ_CP042813.1\|WP_024753000.1\|333204_333567_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|224648	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms].	4.61103e-26
NZ_CP042813.1\|WP_148878581.1\|332296_332827_+\|DnaJ-domain-containing-protein	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	3.8876e-39
NZ_CP042813.1\|WP_002698061.1\|356477_357482_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	5.71106e-121
NZ_CP042813.1\|WP_024752997.1\|337421_338429_-\|phosphate-acetyltransferase	gnl\|CDD\|273196	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase. Alternate name: phosphotransacetylase Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases [Central intermediary metabolism, Other, Energy metabolism, Fermentation].	1.41088e-135
NZ_CP042813.1\|WP_148878582.1\|333595_334960_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.98583e-48
NZ_CP042813.1\|WP_024752995.1\|339815_341222_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	3.56862e-92
NZ_CP042813.1\|WP_044634937.1\|347064_348795_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.22429e-130
NZ_CP042813.1\|WP_148878585.1\|344708_345311_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.44605e-12
NZ_CP042813.1\|WP_002695411.1\|331613_332300_+\|UMP-kinase	gnl\|CDD\|239786	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.37909e-87
NZ_CP042813.1\|WP_148878583.1\|335035_335551_-\|hypothetical-protein	gnl\|CDD\|214644	smart00388, HisKA, His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.	2.65541e-11
NZ_CP042813.1\|WP_148878584.1\|342381_343887_-\|IMP-dehydrogenase	gnl\|CDD\|180842	PRK07107, PRK07107, IMP dehydrogenase.	0
NZ_CP042813.1\|WP_044634938.1\|345349_347065_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.58967e-134
NZ_CP042813.1\|WP_148883881.1\|354688_355441_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.89214e-128
NZ_CP042813.1\|WP_024752998.1\|335553_337422_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.30432e-18
NZ_CP042813.1\|WP_024752211.1\|355437_356481_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.68345e-98

>NZ_CP042813.1|WP_024752995.1|339815_341222_-|MBL-fold-metallo-hydrolase
MSIKMYSLGAAQEVTGSKHMLEVDDELYLIDCGAFQGRRAEADKKNRDFNVPADKLTAVILTHGHYDHCGLLPLLSIHGFKGNIYATPATRDIANLILMDSARIQARDAEFLSKQAKKKGERFDWQPLFDEEDVVNTVNQFVTVSYHRATWLSSKVLLEFYDAGHILGSAMALLTVRDSSGKEVKIAYTGDLGRKNKPIIRDPDTIPPVDYIVLESTYGNRRHEDLDNALHILARTAKELVRSCGKMIIPAFAVERTQELVYYFHLLVDKQIIPEIPIYVDSPMAVNATSIFQVHPECYDKETQEAFVKHHKNPFGFNALKFITSVGESKELNTIDGPMIIISADGMCEFGRVTHHLSNNIENPTTKILLVGFMAENTLGRRLQNRETEVKIFGEWHQVRAEIVQINAFSAHADYAESTEWLQSLDTSRLQKIYLVHGEPDAQKFLQDYLAERDFSAHIVKYGEVFDL
>NZ_CP042813.1|WP_024752996.1|339044_339812_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MIIISGFHSIEERLRASTAEERSGITLYYAKSGPRVKKIIAQAGQLGVRCIQSSDAQLDSMASSLPESLRAHRGILLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHNIGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEGFWVYGADASGEPIGKLSFPQKILLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVSVAAGILLYEIRRSLGV
>NZ_CP042813.1|WP_024752997.1|337421_338429_-|phosphate-acetyltransferase
MNFNERMRATAKEYKNKLVLPEACEERTLKAARLIVDEKMVSALYLIGEEAAVNEAAKKNGVSLDGITVVNPKTSEWLDGFASAFYEKRKHKGITLEQAKTDIEDPLRFAAMMLVQNKADAMVAGAQNSTANVLRAGLTVIGTLPGMKTASSCFVIDTKKPKQGANGVFIFSDCAVIPNPSAEQLADIAVSAAQSCKTFTGESAVAALLSYSTKGSGGNKDESILKVQEAVSLLKERKPDFLFDGEIQLDAALVPSITEKKAPGSPITGKVNTLVFPNLDAGNIGYKLVQRLAEADAYGPFLQGFAKPLSDLSRGCSVEDIVVVSAVTLVQAGKK
>NZ_CP042813.1|WP_024752998.1|335553_337422_-|tetratricopeptide-repeat-protein
MSTTAARIAEAVEAGKARNYPQAIKILEDLAAQGIADSKEGVFSTTNKNHPEIYLYLSRAWHAEKNYARAVVYGNAYTRRKPQDPAGWFFLGRTFLSLQNYEKAIYALTKSLAINEASLEAKALLGLAYLRAKKASQARAVFEEALQKAPKNTRLNTGYLNALFIEAVQILRKGDADTARQMLTFVINNNIDGVAPRLYLAHAFRALKAFPEALTQYKAALAFAPDDPALQWYPAAMLAQMGDIEGASEILSKAGINVKGDELSDQFLAIGTVRKHLEEGLWARAAGAARVYIKNFGSSAEVHLLMAEAQRNMGRFSAALNHCARAAKLEPDNPFVHYCIMLCLQQAGRWEELAQEIPRAEAAGCDSDDMYYYRVVTAAHIDNPPEQVLPHLQALAQQGKADTLLFTALGRTYVRLDMAELAIPWYQKTLEIDPDNEEAKIGLIACYEALCQNEEIHTSYQDYFSRWADNTVLRKDFIEFLQKQERWEEAADNIEILASQISGANFAPQLALNRRKAGQYRKAAILYRSLLRQKPEEKILLHNLVYCLDKMGQTKSALNLLVAARKTFGENPDTMLIEGIFYLRDKKAEDAIKTFQYILEKNPQNERAAEFLKKAYAGLKRK
>NZ_CP042813.1|WP_148878583.1|335035_335551_-|hypothetical-protein
MTLFDNKVKDYLSHSSFACMIVTANGIPLAWNRAAENLLPQYFGTGNAKQKSIFDFFNECGITNIFQKLTESTDVPIVIEWMSPSNKDFKATLEKQQDNNYFIILNDITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTKLDQEQKEYIR
>NZ_CP042813.1|WP_148878582.1|333595_334960_-|response-regulator
MQFENIPFDLVSLMESSIDFIAIEGHKKGLEILLNMSPALNPYFIGDPGRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGKAMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEIGVKDNKPHGSIFWFKLPMTQAKKQECNHTILLKNTTKILIVDDNLNVHKYLSKLADYIRFSNVFFAKSGKEALKLLRESAKSDPFQICFIDMIMPRMDGWRLGAEIHNDPEISSCLLFLMIPEGVLRADAKMKLLTWFSGYLYKPLKKETLLRSLNTAAALLSDTATEPLEELESVEDYEEDTSVYFFGLKILVVEDHPVNRQLIKALLEKSGCIVTAVEDGKKAVEIACTKPFDLIFMDIQLPFLNGYEATAKIRELGIKTVIIACTASAQENEEDSYLACGMNDVLTKPFNRETLIKLLKKYFPNM
>NZ_CP042813.1|WP_024753000.1|333204_333567_+|TraR/DksA-family-transcriptional-regulator
MKKEFIDEMKEVLQNNKIELLKTLAAHNEDFNAIIEGVDPKDFGDIAADDTDRKMLESMGAKGVKQLQQIDSALARIEQGKYGKCIKCNKEIPEDRLRALPYALMCIECQSASEQKKKRN
>NZ_CP042813.1|WP_024753001.1|332832_333051_-|translation-initiation-factor-IF-1
MAKEEAIEVEGVVKEALPNTTFKVELKNGHEILAYLSGKMRKHYIRIVPGDTVKVALSPYDLNRGRIMFRER
>NZ_CP042813.1|WP_148878581.1|332296_332827_+|DnaJ-domain-containing-protein
MNMNDYYKILGVSATASDDEIKKAFRNKALKYHPDKNPNNPRAEEEFKKINEAYSVLSDENKRAAYDSQRNFSYQWGESQWSENAHSQRDYSPFGTYWYEKHYTNTYRNDSSNKNDSSYSKKDAFSFLAQGIFFVILAVLSLKFTIIFGFFGLLLSISFFTKGIKSLGTGLSLLFK
>NZ_CP042813.1|WP_002695411.1|331613_332300_+|UMP-kinase
MVTVLSVGGSIVAPETPDSEFIDKFATTIITWLKEDFSRKIIMVVGGGGPARIYQKAYKNVVKEKVVDADADWIGIMATRLNAQLLKAVFGQLCPNSVVTDPTAVEIFSGQVLIAAGWKPGFSTDNDAVLLAERFSATRVINLSNIAKVYTDDPKTNPEAKPIDQISWDDFIKIVGTEWVPGKSTPFDPVASLRAKKSGIQVICAAGRDLENIEKILNGEPFIGTVIG
>NZ_CP042813.1|WP_148878584.1|342381_343887_-|IMP-dehydrogenase
MAFYYTEPSHTFNEYLLIPRYSSKEHSPQNVSLRTPLVRMKNGEEPQFTLNIPLVSAIMQSVSNDKTAIALAKEGGLSFIFGSQAIEKQAEMVSAVKNYKAGFVESDSNILPRQTLQDILDLKIKTGHTTVAVTEDGSAHGKLLGVVTGRDYRPSRMDRSLLVSEFMTPISKLTVGKEGISLAEANDLIWEYKLNSLPIVNEKGELVAFVFRKDYESKKENPNELLDEKKRYIVGAGINTRDYKERVPALIEAGADILCIDSSDGFSEWQKETIQFVKKQYNGRVPVGAGNIVDKDGFDFLADAGADFIKVGIGGGSICITRETKGIGRGQATALIEVAKARNEYYERTGVYIPICSDGGIVYDHHITLALAMGADFCMLGRYFARFDESPTNKVLVNGTYMKEYWGEGSARARNWQRYDSGGDAKLAFEEGVDSYVPYAGPLHDNVQESMHKVKATMCNCGTLTIPELQKHAKLTLVSSASITEGGAHDVILKDIHANRT
>NZ_CP042813.1|WP_148878585.1|344708_345311_+|TetR-family-transcriptional-regulator
MCAKKRLPAEVRKKEIRDAAKKVFLQKGFSNTSMEDVIAEVGMSKGGVYRHYKSTAEMLHDLMTDGNHNRYNLIDDFLAKEKNISEPDVAIEVSLMKLLDKNDYKSLYAMFLMEAEKNPDLKKLKNKIFNEGKKEFLRVVTQRDLKELECFISDEWVAFTNAIIVATEILDVRKVFCNHKDFFKDIIRQYMEKSQNKNNF
>NZ_CP042813.1|WP_044634938.1|345349_347065_+|ABC-transporter-ATP-binding-protein
MNLIKRYVQKNKGKYIASIFFAVVGVIMDLAAYIILSKIIAALITGSTDAGFYGKNILYILLILVLKEIFAGTSTTISHTATFKSLKEIRKEIARKLFKMPLGDILNQSSGKLKNIIVDQVDHMETTLAHVIPEATANIVGPAILLIYMFILDWRLALLSLIPLIIGMLAIMSVMNESYKKNYKESVELGQNMNNAIVEYVGGVEVIKTFNQSETSYKKYSDAVYDNARFYYNWMKGCMMQVSIGRFISPMGLLTILPFGVFFYIRGTIALTALIQLIILSFGTVSGILKVMNFMDDLARVGTITGEIESILNARELSHSEESVSINNHTIEFTDVNFSYEKDKKVIDNLNLKINEGDVTAFVGPSGGGKSTIAKLIAGFWDTDAGEITIGGANLKEIPLSQLSDLISYVSQDNFLFDMSVLENIRIGNPNASDSEVKEIAKKSGCEKFILELENGYDTLVGEGGGHLSGGERQRISIARAMLKNAPIVILDEATSYIDPENESIMQEAIGNLVQNKTLIIIAHRLRTITDADKIFVIQGGHIESSGTHQELLEKSSLYSDMWNAAIKGDE
>NZ_CP042813.1|WP_044634937.1|347064_348795_+|ABC-transporter-ATP-binding-protein
MLTIFKKIWNFSKQEQSNIKFSLFFGFLNAVFNALQFAAIYYMLIKILQNEIAVIDIGIVSAIMLTSAVGKVLTQNKSQLQQTHAGYFMAAHKRISIGEKLKKVPMGFFSDFSLGKITTLATTSLSQIEIWVPLLLVLVLGGILNTVVFVLSLFFLNVTITAAAVVGIIGFFIVTSLMERKSRRNAHHVQEVQTALTKEVLSTVQGMQVIKSYNLDGENNKELDDSFERTHVLLLKLEKLMIPFTVIQRIVIGLTITCMLYLAVTMYISGTLTLAKTIMSMIASFIIFEGLLAAGSSMAVLRIAENAIDSLDYVNTIPDMEEGKDEKEISNSNIEFKNVSFSYDKKKILDDVSCVIKENTMTALVGPSGSGKTTFSQLIARFWDVNAGKITIGGKDIREYTLPNLMSNISYVFQNVYLFNDTIENNIKFGSPDASREEVIAAAKKACCHDFITALPNQYETIVGEGGAALSGGEKQRISIARAMLKNAPIIIFDEATANVDPENEDKLQTAIEALTKNKTVIMIAHRLKTVRNANQIIVLNDGKIEELGTHNQLMQKEGTYKKFIEARQSASSWKI
>NZ_CP042813.1|WP_148883880.1|352247_352433_+|hypothetical-protein
MPRTPVVPNSSDVLKQDCLQSFKTRRFNFAMDGKIMPCGGSTQQRCFKSTNFFQVLLKLVV
>NZ_CP042813.1|WP_024752213.1|352685_353924_-|OmpA-family-protein
MRICFKKILAVLLLVLNTAVMQAEIFRFKFKDGESYRINSLVIEDVFVNNFFSHTAEITNRITVDISDVKPESAENRLSALHTCTFMTSERNLHKTFRWGRNYESVFRRDDLGVYTIEPKYFMPVVRNVPVFPEKDLKPGDTWEFEGEEAHDLRDGFDIQTPFRVPFTVAYTYKGEIEKGGKKYHHIIAEYNLLYNVPPQLIAKNQHKLPTLYPVRTIGYSKQDLYWDNEAGNLPKYTETFKIQLMLNSGRTLTYEGTASAEITETKKLDKAAVAEDLTQKIEELGIENTTISQTDEGITISIENIQFEADSARLLSSEKEKLQKIGRLLQDFPDKELLISGHTALRGTAAERQKLSEERADSVARYLEEIGIRDTQHLYTRGFGARRPLAPNTNEENRARNRRVEITILEK
>NZ_CP042813.1|WP_148883881.1|354688_355441_-|ATP-binding-cassette-domain-containing-protein
MIEVKNAKKKYSKEVQIGPLTINIPEAGITSLVGPNGAGKSTMLLMIGRLLGLDEGQILVADLDTVSANSEALAKVLAVLRQENLFVTRLTVRQLVGFGRFPYTKGRLNKVDEKIISKYIDFLGLTDLENRYLDELSGGQRQRAYVAMVLCQDTDYLLLDEPLNNLDVSRSVQMLTHLRHAADEFGKTIVMVLHDINFAARYSDRICCMKEGRIVEFGTPAEVMQGEKLSKIFETKIEIIQGPYGPIAIY
>NZ_CP042813.1|WP_024752211.1|355437_356481_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTNNNLTQTCLHNGKRSAKAFRSAKEQRHYFYILFAFFALGLLASYGLLVYKNPVPVSSPSFLPVVKRRMIAVTAMIIAATCHGLSTVAFQSVTNNRIITPSLLGFEALYSAIHTSTIFFFGITGLMQFTGIYAFIIQIVIMVGVCLLLYGFLLSGKYGDLQLMLLVGVILGTGLRSISAFMRRLLAPSEFDILQARLFGSVNNADPVYFPVAIPLVLVTSILLLFYSKKLNALSLGRDVCTNLGIPHKRCVIYTLILVSILMSVSTALVGPITFLGFLVAALTYQIAPTYDHRYVFPMVLAVSYTVLTGAYFLMYHVFSAQGVVSLIIELFGGLAFLIVILRKGKL
>NZ_CP042813.1|WP_002698061.1|356477_357482_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTTQPTVEAEKPQRFDRKLWTPAFFIAVVVIIALGVASLFTGVYDIHGQKDGWQMFFITRVPRTISLMLTGAAMAMSGIVMQLLTQNKFVEPTTTGTIEWAGLGLIFVYVTIPGPTLMQRMTGAIIFSFVGTMIFFLFLRKVRLRSSLIVPIIGIMLGAVVSALSTFIGLVFSMTQSLEVWFAGSFASVQRGRYEYLWIIIAITVVVFIFADRLTVAGLGEDIATNLGLNYNRIILFGTVLISLAVGIVAAVIGHLPFLGLVVPNIVSMFRGDDLRSNLPWVCVLGMGTITLCDIIARTIIMPFEVPVSLILGTIGAAVFIGLLLKQRRRKIKR
>NZ_CP042813.1|WP_148878587.1|359343_359856_-|hypothetical-protein
MFPAHSSQAKGRVERLWQTLQSRLPVEFARRGITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNNLFKIEQNKFAAGAMVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG

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Crispr_ID: NZ_CP042813_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_2

352331-352480

Orphan

Consensus_repeat	Method
TTTTGCCATGGACGGCAAAATTATGCCGTGCGGTGGTTCCACGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_2

>merge|NZ_CP042813|2|352331-352480|CRISPRCasFinder
TTTTGCCATGGACGGCAAAATTATGCCGTGCGGTGGTTCCACGCAGCAGCGATGTTTTAAAAGCACAAATTTTTTCCAAGTGCTCTTAAAACTCGTGGTTTAGTTTTTGCCATGGACGGCAAAATTATACCGTGCGGTGGTTCCACGCAG

>NZ_CP042813|2|2|352331-352480|CRISPRCasFinder
TTTTGCCATGGACGGCAAAATTATGCCGTGCGGTGGTTCCACGCAG	CAGCGATGTTTTAAAAGCACAAATTTTTTCCAAGTGCTCTTAAAACTCGTGGTTTAGT
TTTTGCCATGGACGGCAAAATTATACCGTGCGGTGGTTCCACGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024752213.1\|352685_353924_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP042813.1\|WP_024752996.1\|339044_339812_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|349976
NZ_CP042813.1\|WP_002696680.1\|366582_367941_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP042813.1\|WP_148878587.1\|359343_359856_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002698061.1\|356477_357482_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP042813.1\|WP_024752997.1\|337421_338429_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|273196
NZ_CP042813.1\|WP_148878582.1\|333595_334960_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP042813.1\|WP_024752995.1\|339815_341222_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP042813.1\|WP_044634937.1\|347064_348795_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_148878585.1\|344708_345311_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP042813.1\|WP_024752208.1\|360967_362773_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP042813.1\|WP_148878583.1\|335035_335551_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214644
NZ_CP042813.1\|WP_148879198.1\|359864_360590_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379256
NZ_CP042813.1\|WP_148878584.1\|342381_343887_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|180842
NZ_CP042813.1\|WP_044634938.1\|345349_347065_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_148883881.1\|354688_355441_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP042813.1\|WP_024752998.1\|335553_337422_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP042813.1\|WP_024752207.1\|362786_364493_-\|serine-protease	unknown	unknown	gnl\|CDD\|223343
NZ_CP042813.1\|WP_024752206.1\|364479_366516_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752211.1\|355437_356481_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024752213.1\|352685_353924_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	4.04346e-35
NZ_CP042813.1\|WP_024752996.1\|339044_339812_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.81608e-67
NZ_CP042813.1\|WP_002696680.1\|366582_367941_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	2.27199e-70
NZ_CP042813.1\|WP_002698061.1\|356477_357482_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	5.71106e-121
NZ_CP042813.1\|WP_024752997.1\|337421_338429_-\|phosphate-acetyltransferase	gnl\|CDD\|273196	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase. Alternate name: phosphotransacetylase Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases [Central intermediary metabolism, Other, Energy metabolism, Fermentation].	1.41088e-135
NZ_CP042813.1\|WP_148878582.1\|333595_334960_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	6.98583e-48
NZ_CP042813.1\|WP_024752995.1\|339815_341222_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	3.56862e-92
NZ_CP042813.1\|WP_044634937.1\|347064_348795_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.22429e-130
NZ_CP042813.1\|WP_148878585.1\|344708_345311_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.44605e-12
NZ_CP042813.1\|WP_024752208.1\|360967_362773_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP042813.1\|WP_148878583.1\|335035_335551_-\|hypothetical-protein	gnl\|CDD\|214644	smart00388, HisKA, His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.	2.65541e-11
NZ_CP042813.1\|WP_148879198.1\|359864_360590_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.05522e-08
NZ_CP042813.1\|WP_148878584.1\|342381_343887_-\|IMP-dehydrogenase	gnl\|CDD\|180842	PRK07107, PRK07107, IMP dehydrogenase.	0
NZ_CP042813.1\|WP_044634938.1\|345349_347065_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.58967e-134
NZ_CP042813.1\|WP_148883881.1\|354688_355441_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.89214e-128
NZ_CP042813.1\|WP_024752998.1\|335553_337422_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.30432e-18
NZ_CP042813.1\|WP_024752207.1\|362786_364493_-\|serine-protease	gnl\|CDD\|223343	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones].	4.44345e-52
NZ_CP042813.1\|WP_024752211.1\|355437_356481_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.68345e-98

>NZ_CP042813.1|WP_044634937.1|347064_348795_+|ABC-transporter-ATP-binding-protein
MLTIFKKIWNFSKQEQSNIKFSLFFGFLNAVFNALQFAAIYYMLIKILQNEIAVIDIGIVSAIMLTSAVGKVLTQNKSQLQQTHAGYFMAAHKRISIGEKLKKVPMGFFSDFSLGKITTLATTSLSQIEIWVPLLLVLVLGGILNTVVFVLSLFFLNVTITAAAVVGIIGFFIVTSLMERKSRRNAHHVQEVQTALTKEVLSTVQGMQVIKSYNLDGENNKELDDSFERTHVLLLKLEKLMIPFTVIQRIVIGLTITCMLYLAVTMYISGTLTLAKTIMSMIASFIIFEGLLAAGSSMAVLRIAENAIDSLDYVNTIPDMEEGKDEKEISNSNIEFKNVSFSYDKKKILDDVSCVIKENTMTALVGPSGSGKTTFSQLIARFWDVNAGKITIGGKDIREYTLPNLMSNISYVFQNVYLFNDTIENNIKFGSPDASREEVIAAAKKACCHDFITALPNQYETIVGEGGAALSGGEKQRISIARAMLKNAPIIIFDEATANVDPENEDKLQTAIEALTKNKTVIMIAHRLKTVRNANQIIVLNDGKIEELGTHNQLMQKEGTYKKFIEARQSASSWKI
>NZ_CP042813.1|WP_044634938.1|345349_347065_+|ABC-transporter-ATP-binding-protein
MNLIKRYVQKNKGKYIASIFFAVVGVIMDLAAYIILSKIIAALITGSTDAGFYGKNILYILLILVLKEIFAGTSTTISHTATFKSLKEIRKEIARKLFKMPLGDILNQSSGKLKNIIVDQVDHMETTLAHVIPEATANIVGPAILLIYMFILDWRLALLSLIPLIIGMLAIMSVMNESYKKNYKESVELGQNMNNAIVEYVGGVEVIKTFNQSETSYKKYSDAVYDNARFYYNWMKGCMMQVSIGRFISPMGLLTILPFGVFFYIRGTIALTALIQLIILSFGTVSGILKVMNFMDDLARVGTITGEIESILNARELSHSEESVSINNHTIEFTDVNFSYEKDKKVIDNLNLKINEGDVTAFVGPSGGGKSTIAKLIAGFWDTDAGEITIGGANLKEIPLSQLSDLISYVSQDNFLFDMSVLENIRIGNPNASDSEVKEIAKKSGCEKFILELENGYDTLVGEGGGHLSGGERQRISIARAMLKNAPIVILDEATSYIDPENESIMQEAIGNLVQNKTLIIIAHRLRTITDADKIFVIQGGHIESSGTHQELLEKSSLYSDMWNAAIKGDE
>NZ_CP042813.1|WP_148878585.1|344708_345311_+|TetR-family-transcriptional-regulator
MCAKKRLPAEVRKKEIRDAAKKVFLQKGFSNTSMEDVIAEVGMSKGGVYRHYKSTAEMLHDLMTDGNHNRYNLIDDFLAKEKNISEPDVAIEVSLMKLLDKNDYKSLYAMFLMEAEKNPDLKKLKNKIFNEGKKEFLRVVTQRDLKELECFISDEWVAFTNAIIVATEILDVRKVFCNHKDFFKDIIRQYMEKSQNKNNF
>NZ_CP042813.1|WP_148878584.1|342381_343887_-|IMP-dehydrogenase
MAFYYTEPSHTFNEYLLIPRYSSKEHSPQNVSLRTPLVRMKNGEEPQFTLNIPLVSAIMQSVSNDKTAIALAKEGGLSFIFGSQAIEKQAEMVSAVKNYKAGFVESDSNILPRQTLQDILDLKIKTGHTTVAVTEDGSAHGKLLGVVTGRDYRPSRMDRSLLVSEFMTPISKLTVGKEGISLAEANDLIWEYKLNSLPIVNEKGELVAFVFRKDYESKKENPNELLDEKKRYIVGAGINTRDYKERVPALIEAGADILCIDSSDGFSEWQKETIQFVKKQYNGRVPVGAGNIVDKDGFDFLADAGADFIKVGIGGGSICITRETKGIGRGQATALIEVAKARNEYYERTGVYIPICSDGGIVYDHHITLALAMGADFCMLGRYFARFDESPTNKVLVNGTYMKEYWGEGSARARNWQRYDSGGDAKLAFEEGVDSYVPYAGPLHDNVQESMHKVKATMCNCGTLTIPELQKHAKLTLVSSASITEGGAHDVILKDIHANRT
>NZ_CP042813.1|WP_024752995.1|339815_341222_-|MBL-fold-metallo-hydrolase
MSIKMYSLGAAQEVTGSKHMLEVDDELYLIDCGAFQGRRAEADKKNRDFNVPADKLTAVILTHGHYDHCGLLPLLSIHGFKGNIYATPATRDIANLILMDSARIQARDAEFLSKQAKKKGERFDWQPLFDEEDVVNTVNQFVTVSYHRATWLSSKVLLEFYDAGHILGSAMALLTVRDSSGKEVKIAYTGDLGRKNKPIIRDPDTIPPVDYIVLESTYGNRRHEDLDNALHILARTAKELVRSCGKMIIPAFAVERTQELVYYFHLLVDKQIIPEIPIYVDSPMAVNATSIFQVHPECYDKETQEAFVKHHKNPFGFNALKFITSVGESKELNTIDGPMIIISADGMCEFGRVTHHLSNNIENPTTKILLVGFMAENTLGRRLQNRETEVKIFGEWHQVRAEIVQINAFSAHADYAESTEWLQSLDTSRLQKIYLVHGEPDAQKFLQDYLAERDFSAHIVKYGEVFDL
>NZ_CP042813.1|WP_024752996.1|339044_339812_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MIIISGFHSIEERLRASTAEERSGITLYYAKSGPRVKKIIAQAGQLGVRCIQSSDAQLDSMASSLPESLRAHRGILLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHNIGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEGFWVYGADASGEPIGKLSFPQKILLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVSVAAGILLYEIRRSLGV
>NZ_CP042813.1|WP_024752997.1|337421_338429_-|phosphate-acetyltransferase
MNFNERMRATAKEYKNKLVLPEACEERTLKAARLIVDEKMVSALYLIGEEAAVNEAAKKNGVSLDGITVVNPKTSEWLDGFASAFYEKRKHKGITLEQAKTDIEDPLRFAAMMLVQNKADAMVAGAQNSTANVLRAGLTVIGTLPGMKTASSCFVIDTKKPKQGANGVFIFSDCAVIPNPSAEQLADIAVSAAQSCKTFTGESAVAALLSYSTKGSGGNKDESILKVQEAVSLLKERKPDFLFDGEIQLDAALVPSITEKKAPGSPITGKVNTLVFPNLDAGNIGYKLVQRLAEADAYGPFLQGFAKPLSDLSRGCSVEDIVVVSAVTLVQAGKK
>NZ_CP042813.1|WP_024752998.1|335553_337422_-|tetratricopeptide-repeat-protein
MSTTAARIAEAVEAGKARNYPQAIKILEDLAAQGIADSKEGVFSTTNKNHPEIYLYLSRAWHAEKNYARAVVYGNAYTRRKPQDPAGWFFLGRTFLSLQNYEKAIYALTKSLAINEASLEAKALLGLAYLRAKKASQARAVFEEALQKAPKNTRLNTGYLNALFIEAVQILRKGDADTARQMLTFVINNNIDGVAPRLYLAHAFRALKAFPEALTQYKAALAFAPDDPALQWYPAAMLAQMGDIEGASEILSKAGINVKGDELSDQFLAIGTVRKHLEEGLWARAAGAARVYIKNFGSSAEVHLLMAEAQRNMGRFSAALNHCARAAKLEPDNPFVHYCIMLCLQQAGRWEELAQEIPRAEAAGCDSDDMYYYRVVTAAHIDNPPEQVLPHLQALAQQGKADTLLFTALGRTYVRLDMAELAIPWYQKTLEIDPDNEEAKIGLIACYEALCQNEEIHTSYQDYFSRWADNTVLRKDFIEFLQKQERWEEAADNIEILASQISGANFAPQLALNRRKAGQYRKAAILYRSLLRQKPEEKILLHNLVYCLDKMGQTKSALNLLVAARKTFGENPDTMLIEGIFYLRDKKAEDAIKTFQYILEKNPQNERAAEFLKKAYAGLKRK
>NZ_CP042813.1|WP_148878583.1|335035_335551_-|hypothetical-protein
MTLFDNKVKDYLSHSSFACMIVTANGIPLAWNRAAENLLPQYFGTGNAKQKSIFDFFNECGITNIFQKLTESTDVPIVIEWMSPSNKDFKATLEKQQDNNYFIILNDITQQKQHDKLVQSEKEETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTKLDQEQKEYIR
>NZ_CP042813.1|WP_148878582.1|333595_334960_-|response-regulator
MQFENIPFDLVSLMESSIDFIAIEGHKKGLEILLNMSPALNPYFIGDPGRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGKAMPALYFEIADTGIGITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEIGVKDNKPHGSIFWFKLPMTQAKKQECNHTILLKNTTKILIVDDNLNVHKYLSKLADYIRFSNVFFAKSGKEALKLLRESAKSDPFQICFIDMIMPRMDGWRLGAEIHNDPEISSCLLFLMIPEGVLRADAKMKLLTWFSGYLYKPLKKETLLRSLNTAAALLSDTATEPLEELESVEDYEEDTSVYFFGLKILVVEDHPVNRQLIKALLEKSGCIVTAVEDGKKAVEIACTKPFDLIFMDIQLPFLNGYEATAKIRELGIKTVIIACTASAQENEEDSYLACGMNDVLTKPFNRETLIKLLKKYFPNM
>NZ_CP042813.1|WP_024752213.1|352685_353924_-|OmpA-family-protein
MRICFKKILAVLLLVLNTAVMQAEIFRFKFKDGESYRINSLVIEDVFVNNFFSHTAEITNRITVDISDVKPESAENRLSALHTCTFMTSERNLHKTFRWGRNYESVFRRDDLGVYTIEPKYFMPVVRNVPVFPEKDLKPGDTWEFEGEEAHDLRDGFDIQTPFRVPFTVAYTYKGEIEKGGKKYHHIIAEYNLLYNVPPQLIAKNQHKLPTLYPVRTIGYSKQDLYWDNEAGNLPKYTETFKIQLMLNSGRTLTYEGTASAEITETKKLDKAAVAEDLTQKIEELGIENTTISQTDEGITISIENIQFEADSARLLSSEKEKLQKIGRLLQDFPDKELLISGHTALRGTAAERQKLSEERADSVARYLEEIGIRDTQHLYTRGFGARRPLAPNTNEENRARNRRVEITILEK
>NZ_CP042813.1|WP_148883881.1|354688_355441_-|ATP-binding-cassette-domain-containing-protein
MIEVKNAKKKYSKEVQIGPLTINIPEAGITSLVGPNGAGKSTMLLMIGRLLGLDEGQILVADLDTVSANSEALAKVLAVLRQENLFVTRLTVRQLVGFGRFPYTKGRLNKVDEKIISKYIDFLGLTDLENRYLDELSGGQRQRAYVAMVLCQDTDYLLLDEPLNNLDVSRSVQMLTHLRHAADEFGKTIVMVLHDINFAARYSDRICCMKEGRIVEFGTPAEVMQGEKLSKIFETKIEIIQGPYGPIAIY
>NZ_CP042813.1|WP_024752211.1|355437_356481_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTNNNLTQTCLHNGKRSAKAFRSAKEQRHYFYILFAFFALGLLASYGLLVYKNPVPVSSPSFLPVVKRRMIAVTAMIIAATCHGLSTVAFQSVTNNRIITPSLLGFEALYSAIHTSTIFFFGITGLMQFTGIYAFIIQIVIMVGVCLLLYGFLLSGKYGDLQLMLLVGVILGTGLRSISAFMRRLLAPSEFDILQARLFGSVNNADPVYFPVAIPLVLVTSILLLFYSKKLNALSLGRDVCTNLGIPHKRCVIYTLILVSILMSVSTALVGPITFLGFLVAALTYQIAPTYDHRYVFPMVLAVSYTVLTGAYFLMYHVFSAQGVVSLIIELFGGLAFLIVILRKGKL
>NZ_CP042813.1|WP_002698061.1|356477_357482_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTTQPTVEAEKPQRFDRKLWTPAFFIAVVVIIALGVASLFTGVYDIHGQKDGWQMFFITRVPRTISLMLTGAAMAMSGIVMQLLTQNKFVEPTTTGTIEWAGLGLIFVYVTIPGPTLMQRMTGAIIFSFVGTMIFFLFLRKVRLRSSLIVPIIGIMLGAVVSALSTFIGLVFSMTQSLEVWFAGSFASVQRGRYEYLWIIIAITVVVFIFADRLTVAGLGEDIATNLGLNYNRIILFGTVLISLAVGIVAAVIGHLPFLGLVVPNIVSMFRGDDLRSNLPWVCVLGMGTITLCDIIARTIIMPFEVPVSLILGTIGAAVFIGLLLKQRRRKIKR
>NZ_CP042813.1|WP_148878587.1|359343_359856_-|hypothetical-protein
MFPAHSSQAKGRVERLWQTLQSRLPVEFARRGITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNNLFKIEQNKFAAGAMVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042813.1|WP_148879198.1|359864_360590_-|helix-turn-helix-domain-containing-protein
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGLAAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGIYSPKKRRTRKKVHKTRERRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTKEHNSAKLSST
>NZ_CP042813.1|WP_024752208.1|360967_362773_-|elongation-factor-4
MFNPDNIRNFCIVAHIDHGKSTLADRLIEKTKAVSERAQRAQMTDDMDIERERGITIKSHAVRIPYTAQDGKAYILNFVDTPGHVDFTYEVSRAIASCEGAILIVDASQGVESQTLSNMYLALEHNLEILPVINKIDLPAANIPEVLHQIDHDLGLDSEQAVPVSAKTGQNIDALFEAIVTHFPPPTGSDNNPLQALIFDCNYDPYRGVIIHVRVFEGVLKPGMTIRFMNNKAEYKIEETGVFVFALVATECLHAGEVGYIIAGIKTVSDVGVGDTITDANAPCAEPLAGFKEIKPVVFSSVYPVDTNDYEELRESFEKLKLNDASLSWEKDSSLALGHGFRCGFLGLLHLEIVQERLEREFDQSVIFTAPSVRYQIHLRSGETIICDNPADYPDETKIASADEPYIKAMVITPTEYLGNIMSLCMEKRGVQAGMNYLDEKRVEMIYEMPLAEVLFDFYDRLKSVSRGYASFDYELIEMRPTDLVKIDILINGKSVDALAQLAYRPNAYKKASHVCAQLKEEITRQQFKIAIQGAIGNQIISRETVNALRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKMIGDVELPQSAFLSVLKTNTD
>NZ_CP042813.1|WP_024752207.1|362786_364493_-|serine-protease
MTKYKRNILSVFFCTVLIISCKNFDTVQSTGDFSKTASINYEISLARKNFADKPLQGLCRAKVLLQNTSDNADVLNLYRDAVQNAQKAFLSAAEKKDWYTALIFYQSLQSLGEAPQNWTEEKIRTAQKATWKELHRDILLEIFEDTKATPQDEAPSIQTVAKMIKGTTTVWVDKGIRVEKGRGFSDKILGSGFFIDKRGYFITNYHVIQSEVDPEYEGYSRVYIKPSANKNVKIPAKVIGWDSIFDLALLKTEIEPEVVFKLGSSEGLSIGSKIYAIGSPAGLDKTLTSGIVSAKNRKLFSLGDALQIDASVNPGSSGGPIVDEKGNVQAIVFAGLESLEGLNFAIPVEFLKLILPDLYRGGKVEHSWLGAFGQVLAPRALSNTKGVKLLYTIPGCPAALAIVPEQSIITAINDTPIDTIEKLQQELLHYSPDTIIKISGYALQDKNKPDTIDSYVKKDWFVQTAARPEFPVKLIYEKDLSYRAFTPLFGFEFGSTGKKNTYRVERIVSGTFADENEFTQGDVIEIQRVRINEENKVVIADVYAKRRKAGYFDSFMQFGQYLDNPLFF
>NZ_CP042813.1|WP_024752206.1|364479_366516_-|hypothetical-protein
MKRLLRSVFVVFFILGISFVSAQDSAQAVNAAAALKHLQSAAENCAQQKWQEALFQAQLGSVYDAKLADLPYIEALCYTELGYTRAAAIERAELASSLGMIWRLYDATAINILLAKLYTETLRYDEALAVLADIPYPSADSDFYTAVALYGLKRFSQAEDAIVSSLNRWAFDSRFPKLFFLQEKDRTPSAKAKRIASDIISKLYVWQDSDPEVLLYAVDFEPNTKEAVRKLKIYLNMYAQNNSTQEPYAQAFSILAALKYGIINEKTAVERFFNLTLPFKFADSQETPYRFFFTDLLVDFCKLIGDSNLRKQMAADLSTFNGVLVTDDNRDGIISSKILYTSGRPQLAEFDTDQDGIAEYTIDASYGTPTKIIGKAGAYEVDYDTYPWINTVKTKKGVYTLRPVSFAWKPVEQRSLNINLFSLTKKYTDFFTLKTKNVSGLSERELIFAAAYYEYSDDMIEGAITKTYFDKGVPISSETRINEIPYSVLYYVNGRPSQKKIDRDGDGYFETIEKYSPKGKLQIVLTDINKNKLYEYSEEYLTNGDITKKWDNDEDGTPEIVYTQFKSGNAQCRWTHPVTRQKVIVEYKQTIPAKLTANDKAEAIIKDTKFPLYWIRKPPVFSETITKKILEVFNETKAPVVSYFVEVNTVPFFAVRSGGYIFVEQLEEMQNEPDNDKI
>NZ_CP042813.1|WP_002696680.1|366582_367941_-|tRNA-lysidine(34)-synthetase-TilS
MADSLLDAVLQNLSSILKVKKTYRLLIAVSGGADSLALLTALHTINTDFNHRLFVVTVNHNIREKNETKADADFVSSFCAHLQPPVPCIVKTIPAGSVKELASIRKTGTEDAARILRYRAFEEAAIEVSADFILTAHNKNDMYETILMRLFQGGSPKSIAGIPLVRGKYLRPLLTVERASIEAFLRQRNIFWREDKTNFEQVYLRNKIRHTLIPVLHSVFVGWQSGLDTAIARIKADSDYCDTLLEKKQKKANKFWQKYRDASLSLDYAFFTSFPLPLRIRLIQQACNLLEIHKRIPFASIQRLALYSGKKTVQTSGIKLFREKDLLIFSKADTHIAHSQKMGYLLWIEKTGNYKSPIGIFEIRKKSTGIFIFLNPDYEGIGPFPLPLCIRSWLEGDMLTIKGGKKSIKKLFTEWTVSLAHKENMPIIEVRGTVRAIYGKPFGYKNRFSENN

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Crispr_ID: NZ_CP042813_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_3

645787-645896

Orphan

Consensus_repeat	Method
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_3

>merge|NZ_CP042813|3|645787-645896|CRISPRCasFinder
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATTGACCTTTCAAAATGCACCGAACTTAATTCCATTGGTGATGAGGCTTTTAGTTCCTGCCATAGTTTAAAAAGTATT

>NZ_CP042813|3|3|645787-645896|CRISPRCasFinder
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	GACCTTTCAAAATGCACCGAACTTAATTCCATTGGTGATG
AGGCTTTTAGTTCCTGCCATAGTTTAAAAAGTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024751837.1\|642577_643345_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP042813.1\|WP_002700233.1\|653033_654923_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP042813.1\|WP_148878686.1\|643506_643998_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP042813.1\|WP_148878688.1\|652551_652797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024751841.1\|647352_648108_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP042813.1\|WP_082048243.1\|658481_658706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024751830.1\|631281_631836_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP042813.1\|WP_024751833.1\|634392_635772_-\|tryptophanase	unknown	unknown	gnl\|CDD\|237314
NZ_CP042813.1\|WP_148878684.1\|632961_634284_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP042813.1\|WP_024751846.1\|657019_658228_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|225224
NZ_CP042813.1\|WP_002700690.1\|630134_630809_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP042813.1\|WP_148879405.1\|638487_641652_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226115
NZ_CP042813.1\|WP_024751843.1\|649973_652298_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP042813.1\|WP_148878685.1\|636276_636504_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197304
NZ_CP042813.1\|WP_081718609.1\|649335_649539_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002700688.1\|632117_632849_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP042813.1\|WP_044634443.1\|636565_638464_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP042813.1\|WP_044634924.1\|656357_656888_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP042813.1\|WP_024751842.1\|648169_649312_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP042813.1\|WP_002700226.1\|656002_656233_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024751837.1\|642577_643345_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.59368e-72
NZ_CP042813.1\|WP_002700233.1\|653033_654923_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP042813.1\|WP_148878686.1\|643506_643998_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.32818e-21
NZ_CP042813.1\|WP_044634924.1\|656357_656888_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.40276e-06
NZ_CP042813.1\|WP_024751841.1\|647352_648108_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.46525e-67
NZ_CP042813.1\|WP_024751830.1\|631281_631836_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	1.94376e-56
NZ_CP042813.1\|WP_024751833.1\|634392_635772_-\|tryptophanase	gnl\|CDD\|237314	PRK13238, tnaA, tryptophanase.	0
NZ_CP042813.1\|WP_148878684.1\|632961_634284_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	2.49171e-149
NZ_CP042813.1\|WP_002700690.1\|630134_630809_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	8.97316e-110
NZ_CP042813.1\|WP_148879405.1\|638487_641652_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226115	COG3587, COG3587, Restriction endonuclease [Defense mechanisms].	0
NZ_CP042813.1\|WP_024751843.1\|649973_652298_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP042813.1\|WP_148878685.1\|636276_636504_+\|hypothetical-protein	gnl\|CDD\|197304	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	0.00294722
NZ_CP042813.1\|WP_024751846.1\|657019_658228_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.69586e-53
NZ_CP042813.1\|WP_002700688.1\|632117_632849_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	8.49683e-106
NZ_CP042813.1\|WP_044634443.1\|636565_638464_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	2.58438e-37
NZ_CP042813.1\|WP_024751842.1\|648169_649312_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	5.81395e-127

>NZ_CP042813.1|WP_148878686.1|643506_643998_+|DDE-type-integrase/transposase/recombinase
MADTRQQWIDEKTIKGARHGATASLWNFYLWFVYEFCLLTLEYQAKHRLESALQRGRLRAAEALLHSDQGTTYTSHAYREKLTELGMIQSMSRRGNCWDNACIENFFGTIKCESGYYDTLKNGLLTYKQMEELIGKYIEFFNNERIQKKLGWKSPVDFRTQVA
>NZ_CP042813.1|WP_024751837.1|642577_643345_-|IclR-family-transcriptional-regulator
MVEEKIQSIERVFKILEAFKHFSDGAGLTELSEYVDLHKSTVHRFLSTLIVLGYVKKDENNKYNLTLKLYTLARHKTTDLDLITICHKHLKEFSKTINEVIHLVMQDDIYAVYIDKIDSTNAITLQSKVGRRALLVSTSVGKAMLSNCSYDEIREIWDRSSQVKTTENRITDFNVFCKELEKIRQTRIAVDNEENELGVYCVGTAIYGATGEVKGAISITGPTFRMKEKINDELYAKLLHTADIISKELGYAIDS
>NZ_CP042813.1|WP_148879405.1|638487_641652_+|DEAD/DEAH-box-helicase-family-protein
MKFQFKTQKFQTEAVESVVRVFAGQPNSGMSKYRFDLGKREGQGVHDSQKYRQPILVFENEDERRRHLTELYHKANLQISEEDMEFIEAAYRNTDIKLSDEELLKNIQTLQKENNIKYSNNLVKELGTVSIDVEMETGTGKTYCYIKTMFELHKNYGWSKFIVVVPSIAIREGVKKSFEITQEHFMELYGLKARFFIYDSDNLHQLEEFSQSSGINVMIINMQAFNTKKNKRIIYDKRDRFNSRRPIDLIKANRPIIILDEPQKMQGAATQEALKKNFNPLFSINYSATHKKSHNLVYVLDALDAFKKKLVKKIEVKGFDVKNIGGSECYLYLSSIDISPKKPPRARLELKVKRANEIKRETYFFNVGDSLYIKSNNLEQYKNISIAEISPIRSLVTFSNGEELAVGEASGDISEDYIRRIQIRETIASHFEKEEALFTQGIKCLSLFFIDKVDKYRQYNKEGEAVLGDYGKIFEEEYEAALKNVLDDKNLSPDYAKYLRRINVQSTHCGYFSIDKKTGRSVDSKIKRGDSFSNDDSAYDLILKNKERLLSFEEDARFIFSHSALREGWDNPNVFQICALKHSNSDTTRRQEVGRGLRLCVNIEGERQDAEVLGEALVHSVNKLTVVANESYNKFIDGLQKDIEEALYERPRTLSIDYFERRSLYLPDGETFTFEAAEATAAYNYFVRNEYIDDNGKVTDVYRDASETGNFAPLPEKLAPVADSIHNLVQGIYAPSGLEGLMSNGHCAKVKENSINNDNWEKFKELWEQINKRYAYTVDFESAELIQKSIEAINKELFVPKPMYTRTTGEQEGEVFKTQATQTIILDRVAGNFVEYDLIGKIAEHTTLTRKTVAAILKGITREKLNLFAYNPEIFISKISDIINSQKAAVVIEHISYKISGEDPYSQDIFNTSRSSDEFKKAFTAKRSIQNYVFVDGSVKDSVEGKFASALDNADEVIVYAKLPKGPRGFYIPTPVGNYSPDWAISFKKGTVKHIFFIAETKGSMDSLQLRPIEQTKIFCAKKLFNELKLEESKVRYHEVDSYDTLLEVMGKIK
>NZ_CP042813.1|WP_044634443.1|636565_638464_+|site-specific-DNA-methyltransferase
MRTENIADANFAALSRMFPNAVTETIDENGEKIRAIDADKLAQEINIRVISGMEERYQFTWPDKRKSVVLANMPIAAALRPCREESVDFDNTENLYIEGDNLDVLKLLRETYLNRVKMIYIDPPYNTGKEFVYEDDFTESAADYVARSGDYDEQGNRLVKNTEANGRFHTDWLNMIYPRLRLAKDLLSDDGVIFISIDDNEVHNLRKVCDEIFGERNFVGCCIRRTINSGKNDVKTISVFHEYLFIYSKNMDKIRLRQKEKSEEERIRLYKESDDYIESRGRFYLTQLNKNSIQYSDSLNYPILGPDGVEIWPGEGFHDKKWCWRWSSKKVQWGISQGMIVFKATRSGKYKVYTKSYELMDNDGNTISRQNPYNSLEFTGKEYANFNATPELSVLFDGEKIFNFPKSETFIREILRLGSLSSNSLILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQIQELTNEKSEATKAGYKNICEIGKERIRRAAEKIRKENPDAKFDGGFRVLKLDSSNMKEVYYTPDEYTQQDFNLDGLTDNIKEDRSDEDLLFQVMLDLGIPLSAKITRDNNLLCVNDNYLIACFERVDIALITKIAKRKPHYAVFRDGSFTNDAVLSNFEQVFKTHSPNTIRRIL
>NZ_CP042813.1|WP_148878685.1|636276_636504_+|hypothetical-protein
MDMLIHAIILMQESFKQHVRRVSHIMQILDNANKTVKDDLAATLSNGDKFYMAAATHKMNLFKKIKNLKIDLEEI
>NZ_CP042813.1|WP_024751833.1|634392_635772_-|tryptophanase
MKKYVAEPFRIKMVETIKMTSKAERKKKLEKAFYNVFNLRGEDVYIDLLTDSGTNAMSADQWAGVMHGDEAYAGARSYYHLIDAGKDIFGYEFIQPVHQGRAAEKVVFPLILGKGKIAISNMFFDTTRAHVELAGARAVDCVVEEAKHPQVQSPFKGNMDVKKLEEKINEYGKENVGLIVMTITNNSAGGQPVSIENMRQVAAIAKKYGIPLDIDAARYAENAYFIKQREEEFKKSSIKAIIKEMFSYADMFTMSAKKDAIVNMGGLIGIKRDAELYQKIKGNCISYEGFITYGGLSGRDLEALAIGLYEGLEEDYLKYRIGQMEYLAGLLDDAKIAYQSPVGGHGVFIDAKALLPHIPYHQFPGQALALELYLEAGIRACDIGSYMLGNDPDTGKQLQADFEFTRLAIPRRVYTQSHLDIIAEALITIKKHADKVPGYKITWEPPVLRHFQAHLEPMK
>NZ_CP042813.1|WP_148878684.1|632961_634284_-|sodium-dependent-transporter
MKKQEDRELFGSDFGFIIACIGSAVGMGNIWLFPFRAGQLGGAAFLIPYIIFVVLIGYVGIVEEMSFGRAMQTGPLGAFKKATAMHGNNSGEFIGWIPVIGSLGIAIGYAIVVGWILKFTIGSFTGSMIGAENSGAYFGAIAGKFGSLGWHVMGLAITFIIMIAGISSGIEFVNKFMMPAFFVMFIILAIRAATLHGAGSGYAFLTQPDWTKLADPKTWVYALGQAFFSLSLAGSGTVVYGSYLSDKESTTKSAKYVAIFDTIAAILAALVIIPSVFAYGIEPTAGPPLMFITMPMVFKEMPFGAIFAAIFFVAVLFAGVSSLINLFETPVEALQNKFKLSRLASVSIILGLALLVGVFLESGDNLGKWMDVVSIYVIPLGALLSAIMFFWVAGKDLVLKEIAKPQLEPAHSSFYIMGKYVFCGATLIVYILGIFYGGIG
>NZ_CP042813.1|WP_002700688.1|632117_632849_+|endonuclease-III
MVINRFYPYRESKIIACLIVLSYSIKPLTVRLLDKKAIYEVFKRWQSNNPEPKGELYWKNTFTLLVAVVLSAQATDVGVNKATKVLFEVASSPEEILKLGEENLKEYIKTINLYPTKAKRIIGLSEQILREFGGKVPCSREALESLPGVGRKTANVVLNIGFGMPAIAVDTHILRTAPRIGLSDGKTPREVEEDLLRITPEEFLPNAHHWILLHGRYICQARKPKCAECFLEDICCKNGVEAI
>NZ_CP042813.1|WP_024751830.1|631281_631836_+|DJ-1/PfpI-family-protein
MKKAYVFIANGFEEVEAITPIDYLRRANIETVVVGVGTRQVKSPRNVTIICDTELNEVLEKTDETLLVVLPGGLDNSKSLGESEAVENFVKAVHKNGGIIAAICAAPVLTLGKWGMLDGKKFTCYPGMGEDLATKPLQGERVVRDGNIITGCGAGAAEEFSFALIEAVSGKTALQELKKSIVAR
>NZ_CP042813.1|WP_002700690.1|630134_630809_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MANLYLVGTPIGNLGDITMRALETFKAVDVIACEDTRHTLKLLTHFGIRKPLVSCRARNEEEAAKKIVALLDEGKNIAYASDAGTPGISDPGAVLVQFARKAEHTIIPIPGVSAFTALVSVSGSRDKTLIFEGFLSPKAGRRKTRLTELFSANAGFVLYESPYRIVKLLQDIAEIDKERRITVGRELTKLHEELISGSAEEVLNEMAARTAIKGEIAVFVSGRS
>NZ_CP042813.1|WP_024751841.1|647352_648108_+|NADPH-dependent-oxidoreductase
MNEVIKLLQTHSSIRKFDASYVIPEKDLQEIIKASKQAPSWMNGQPYSIIVFNDAKIKEDFAVNVVGAHDKAAKNMNSIKACSVFLLYCIDFYKFTVCGDFSLSDSAEPLMIASVDIGLAMQNAAVATESLRLGCVCIGGIRNQQAHIIEALKLPKFVYPLVGLAIGKPDENTQVKPRLPDSVNVFYNRYDAAQVQEKDLQAYNQTMKDFAVQSGYTTEDWINKFLEFYTKPHYAKNTDEMLAKHGLIKKN
>NZ_CP042813.1|WP_024751842.1|648169_649312_+|cysteine-desulfurase
MNVYLDWAATAIPEQEIIEEAVREAGKYFANPSARHALGKAAAERLETARKTAAECLQVQPEQLIFTSGGTEANHIVLLSMLNRSESLNIAAGAIEHAAISEQVKMLKKNGRKVREIPVNKRGFITPEAVLQTIDANTTLVTVMAVNNETGAIQPIREIGQAVSEFCKGKRKIHFHVDAVQAFGKIPFELANLPISSAAMSGHKIGAPRGIGFLYLAQTLEAFLCGGGQEGGMRAGTENLAGIIALAGCLQKTIPAVAKTYAHVQELSDYLIQKLLCIPGISIIPETRMEDCNNFSPYIIQCTNENIPGEVLQRCLSDMGVYVSTGSACSSKKRSRPILEAMGIGAKQQLNTIRISLGKSTTKEELNQALCCLQTCIEKL
>NZ_CP042813.1|WP_081718609.1|649335_649539_-|hypothetical-protein
MVPNRIEFENYHSYINRSFQTYRFHFDTDGKMKPLCRALFIIWISKCKINLSLRFFCKFYCILPAGF
>NZ_CP042813.1|WP_024751843.1|649973_652298_+|methionine--tRNA-ligase
MKRKLITSALPYVNNIPHLGNLLQVLSADVFARFCRLKGYKTLYICGTDEYGTATETKALQEGKTPQQLCDYYHAIHSDIYNWFNIAFDYFGRTSTPQQTEITQQIFLDLEKNGFITEHEMQQLYCPQCRRFLADRYVRGTCPHCSYEDARGDQCEQCGKLLDPTELKNPQCATCGGTPEPQTTKHLYINLPAIISQYQPWMEEASKNGEWSNNALQMTKSWIRDGLQERAITRDLQWGIPVPKAGYEKKVFYVWFDAPIGYISITKSFTDITGGDWKSWWLDQKDVELFQFIGKDNIPFHTVIFPCSLIGSGQNWTKLFHMSSTEYLNYESGKFSKSKGVGVFGSDAKESGIPADMWRFYLFYNRPEKNDTQFTWKDFQERVNSELIGNFCNLVNRTFSFISRYYNGCIPEVDGTQSSRADVAEPIKQLRKAVESYKKSITDLMDWANLRDGFHQIFELSSIANKAFQDGEPWKNRDADPEKTEALLSELCYFIKDLLILIHPFMPEYASQAASFLGIKIWSGNVFNEQKPDYTIPKSALSWSNIGERKGLKTVQNVVIIYKTLDDKTINAYRERYAGNQQERKKSKEPAAPAKETLPADAIFSQKIALKTAKVIRVERHPEADKLYIETLDDGSGEERVILSGLVPYMEAEEILGKTIIIADNLKPRKMRGIESRGMLLAADYFEGETRKVELLEAPWAAPGTPVLLEGEIENANAEAVAEHYQKRPHSIDADVFFSVPIQVTDYSVTIAGKKLTVDGKPITTAKTQNGTVG
>NZ_CP042813.1|WP_148878688.1|652551_652797_+|hypothetical-protein
MSNSFYNRSFKTRRFGFDTDVKNSEPPRMAVALNRIEFENYHSYINRSFQTHRFHFDTDVKMKPLCRTLFYKTFYVFAKMY
>NZ_CP042813.1|WP_002700233.1|653033_654923_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MNFRYSDYDVIVVGGGHAGIEAALAAARMGEQTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDALGGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQKAKHALELQKNLHIYQDTVVDVLSSGTSETGTVESGAVQAILTARGRTISAKAVVLSTGTFMEGKIYIGEYEAAEGRLGEKAAIGLGSALAQKGFTLGRLKTGTPCRVLRKSVDLSKMEIQEADAIMRPFSFAAAEVHRPQATCYIAYTNEHTHRIIRENFHRSPLFSGKIQATGARYCPSVEDKVKKFPERNRHQIYIEPEGLDTEELYINGLSSSLPEDVQDAMIRTIEGFESVVITRPGYAVDYAYVSPLQLGADLQTHRIKGLFTAGQTNGTSGYEEAGGQGIIAGINAALYSRAQKTQKPYEPFVLGRDEAYIGVMIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQTDSAVHRVRDKIKERSGIIAHWQTLRITSTQAEANPELQSHIGKTFAQTLQDPTVPLSLIVNLDVQAAEHNEEILHAAELEIRYEHYIIAQNKRIEKMRKMENTKIPPNFSYANISGLSTESRTRLEKVRPETIGQAARIQGIRPSDIMLLMVQLR
>NZ_CP042813.1|WP_002700226.1|656002_656233_-|hypothetical-protein
MAKSKISKVNKKIEEKLFGAHEKIKDVVVGAYQKIEDKFVDQYLTKDGESIEDAKKRLKAENLKLEKEHKENESFE
>NZ_CP042813.1|WP_044634924.1|656357_656888_+|TetR/AcrR-family-transcriptional-regulator
MNIKNNKRKRASIEKIEKIFAQLLQKKEINKISVTEICKKAGINRTTFYANYLDIFDLAEKIGKKAIDDFNELYEEEVKSQYNSNDFLKLFSHIKENQLLYKTYFKLGIDSNFKIRRYDTKLAEKYYSNKYIDYHIEYFRAGITAIIKMWLNNNCDLEPEEVFQIIKEEYKNKFPS
>NZ_CP042813.1|WP_024751846.1|657019_658228_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MKEDIINSNAGEGLTVKEIQEKTDLYEPMSFLQSRFWADFKSEYGWAYKQFSVTADSSKFILTVLLRNIRPFGKLAYFPMAPETLLSEDSCDYETAKKQGDLLVRLTEALRAKLPKDVFLFRFDPPWSTRIDNAKGTLENTEPTNVSGAKIPARAKNIAQAFPLLPQSSGGYRIIDAPYDVQPPDTVCLDLSQTEEFLSENLKSKWRYNIRLAEKKGILIERKEGEEAAAAGIDIFYALYQQTAERDAIAIHRKEYYAKLCRKSCPEARIFVYIAEYEKKTLASIITIFTKKEAVYLYGASSNENRNLMPTYLLQWRAILDAKEHGCLRYDFYGIPPTDDPSHPMYGLYRFKTGFGGSILHRVGSLDVPVKPLRYVCYTAAEKLRAFWFKKIKKMLRRGGGS
>NZ_CP042813.1|WP_082048243.1|658481_658706_+|hypothetical-protein
MSNNVLKQGSLQSFKTRKVWFCHGRQNSERARTPVVPNRIEFENYHSYINRSFQTHRFHFATDGKMKPLCRTLY

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Crispr_ID: NZ_CP042813_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_4

717632-717726

Unclear

Consensus_repeat	Method
TGTCAAAAACTAAACCACGAGTTT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP042813_4

>merge|NZ_CP042813|4|717632-717726|CRISPRCasFinder
TGTCAAAAACTAAACCACGAGTTTGAAAACTCCCTGTTGTAAAAGGAGCCCCGGTTTAGTTTTGACGTTCATGTCAAAAACTAAACCACGAGTTT

>NZ_CP042813|4|4|717632-717726|CRISPRCasFinder
TGTCAAAAACTAAACCACGAGTTT	GAAAACTCCCTGTTGTAAAAGGAGCCCCGGTTTAGTTTTGACGTTCA
TGTCAAAAACTAAACCACGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024752910.1\|726639_728391_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_CP042813.1\|WP_148878715.1\|714657_716208_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP042813.1\|WP_052335669.1\|719008_720262_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP042813.1\|WP_044634932.1\|721670_723560_+\|2',3'-cyclic-nucleotide-2'-phosphodiesterase	unknown	unknown	gnl\|CDD\|236505
NZ_CP042813.1\|WP_148878710.1\|707068_707647_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878713.1\|713005_713299_+\|DUF4325-domain-containing-protein	unknown	unknown	gnl\|CDD\|379507
NZ_CP042813.1\|WP_024752911.1\|724515_726570_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP042813.1\|WP_081718619.1\|717832_718048_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002700175.1\|713295_713736_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002698451.1\|730206_730674_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224585
NZ_CP042813.1\|WP_148878711.1\|710070_711372_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP042813.1\|WP_024752692.1\|728978_730235_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225971
NZ_CP042813.1\|WP_148878714.1\|713803_714652_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP042813.1\|WP_148878718.1\|723612_723819_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878712.1\|712038_712872_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_CP042813.1\|WP_148878716.1\|718154_718793_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP042813.1\|WP_044634928.1\|716211_717342_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP042813.1\|WP_148879403.1\|707764_710041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878717.1\|720420_721563_+\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NZ_CP042813.1\|WP_024751798.1\|711375_711930_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024752910.1\|726639_728391_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP042813.1\|WP_002698451.1\|730206_730674_-\|hypothetical-protein	gnl\|CDD\|224585	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown].	7.89671e-50
NZ_CP042813.1\|WP_052335669.1\|719008_720262_-\|ISNCY-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.61056e-09
NZ_CP042813.1\|WP_044634932.1\|721670_723560_+\|2',3'-cyclic-nucleotide-2'-phosphodiesterase	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	1.02511e-105
NZ_CP042813.1\|WP_148878713.1\|713005_713299_+\|DUF4325-domain-containing-protein	gnl\|CDD\|379507	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 99 and 341 amino acids in length. This domain is distantly related to the STAS domain.	3.12031e-07
NZ_CP042813.1\|WP_024752911.1\|724515_726570_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP042813.1\|WP_148878715.1\|714657_716208_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	5.52671e-09
NZ_CP042813.1\|WP_148878711.1\|710070_711372_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00166097
NZ_CP042813.1\|WP_024752692.1\|728978_730235_+\|HD-domain-containing-protein	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	5.60552e-55
NZ_CP042813.1\|WP_148878714.1\|713803_714652_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	9.29931e-80
NZ_CP042813.1\|WP_148878712.1\|712038_712872_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.22038e-42
NZ_CP042813.1\|WP_148878716.1\|718154_718793_-\|CBS-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	5.86855e-55
NZ_CP042813.1\|WP_044634928.1\|716211_717342_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP042813.1\|WP_148878717.1\|720420_721563_+\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	1.02604e-80

>NZ_CP042813.1|WP_044634928.1|716211_717342_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKIRKIFTECHKDAHTAARTGVIALPHGDLRTPAFMPVGTAGTVKGMTKDDLEEIGFEIILANTYHLFLRPGVEVIKAAGGLHGFTQWKRNFLTDSGGFQVFSLANLRRLSDEGVSFQSHLDGSSFFLSPELVVQLQAGFNSDIQMQLDICSNYGISKEQTEKELGLTSAWVKRAFSEWLKTPDEYQGSLFPIIQGGFYKDLRLRSIETVCELNPNGLAIGGLSVGEPTELYAEMLAFTAEHLPKNKPVYIMGIGTPHYILEAVKNGIDLFDCVLPSRNARNGSLFTRKGPISIKKKEFEYDFNPIDSQCNCKVCRTYSRAYLRHLFRSKEILYSMLGTYHNLAFLYTMVQEIRQAIEEDRFAEYYKNFLAEYTGG
>NZ_CP042813.1|WP_148878715.1|714657_716208_-|HEAT-repeat-domain-containing-protein
MYMKKIFCVFCMVFFTLFFVATEEKTAGSKSNSVQTDTADTTDTELDLESEDAAEASAEEQIEEDPETKKQLDTIRYGLEGEVLTLIEELKKNEDTTLNAALQELFAKTKSTAVRDALFDLFSAQKNDSIKDFALEVLKDPVEYKPSTVRNSIKYLVAIEEKEAAPLVRELMKDNSEYADDCISAFGKIGSADDALFLIDYFKNELDDDQKTTLIKRQNLMVALEQLHLPETAAFLEEVARDSGENAVIRGSAAIGLAQIGDDATVSILSDLYEDSDPILRIAAVKGLGFFTTTEAEEILLQGFKDSYYKVRMQSLEAAAEKKPIAAFPYILHRAKTDPVDAVKYAAIKSVGAYNTEEGNLWLKETFLDKSKSNTLRVKAAEALMNNNLDFFYADLEQIMIEVAEDETKKKLRYELGKIFAKVQTELGDSIALAYLTSKDAQTIALGLDMFKQNRYAQSAVRVSEIAEDSNFGSLQRRAKTILADFEQQETPAEEKTEALPEPEDEASPDSDTDSQ
>NZ_CP042813.1|WP_148878714.1|713803_714652_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYRHGFHAGNRADVFKHSVLVAFLKLYTKKQKPFTAFDTHAGGGVYQLTSEYALQTGEAAEGIIPLVSAFEKKLLPQPIPESLEAYLNLSLRYYRKDCSYAGSPEIIKNFLRQDDELILCDLHPAEGAALRALYKNEKRIHVHIRNGYEAVCALTPPKSGRGFVLIDPSYEVDSDYENVITTVQKLHKRWRAASFIIWYPILKRREYETAELKKALSALKGSESFYVENPVRPDFLRPVTPPPAPPAGEYGLQGSGMFVINPPWGMQEAATTIAEWLRKV
>NZ_CP042813.1|WP_002700175.1|713295_713736_+|hypothetical-protein
MTIFLSLVSGLVGAMVGAGIQIFYNNKIEKQRLLHDYKKICFAEWLHLNEELLILLREPQKENNTVFRQAIKQKTELLSFIAAVSKKHEKAVSKLKKHIVDIDERISLSDFAEEAVNIGKVQGNKTKLIREVSTLITEVLDKLAKL
>NZ_CP042813.1|WP_148878713.1|713005_713299_+|DUF4325-domain-containing-protein
MPNLVINFAKPRVKLQPDSGEEFRDEYLIPWLKNNNNASELCVDFEGTVLFTPSFLEESFGGAIRKGFEIVRKIQFKNIPPDVKQQLAKYINKAKKQ
>NZ_CP042813.1|WP_148878712.1|712038_712872_+|DNA-adenine-methylase
MKTPISYYGGKQQLAKKIVSLIPEHKIYCEPFCGGAAVLFAKEPSQAEVINDTNAEIINFYQVVQEDFPALQKEIMKTLHSREMHRHARVIYENPDMFDTVKRAWAVWVQANMSFGNSIGTGFAYEKKNESTTKNIVNKIDEFTDKISNRIRMLQIENCDALKVIASRDTADTFHYIDPPYVGTHQGHYDGYTQQDFDNLLGMLQNIQGKFLLSSFRNKALMEFTKKNNWYCIELKMASSLSAKGKAKRMTKIEVLTANYPIGIVDGEVKKTLKYFL
>NZ_CP042813.1|WP_024751798.1|711375_711930_-|hypothetical-protein
MFAIAALVGCRDNTQAGSGVDTGSTNSGANNSGKTQPSGTQSGKLETVGFVSKRWFDDKTKRPEFTIKNYKVTFNDAPAFDEITWMTYIYTETVGFTNCAGGDTVYPDDYTCWDIYLYPAKPENDFAETWLAKDSLDFSKRIKIPVTKVEVLDNQYFDPASGHPFKLKVSIKGYPDMIIAGSKK
>NZ_CP042813.1|WP_148878711.1|710070_711372_+|hypothetical-protein
MEKIRIRKLFNADLTKENSENFVQKEKITNIIPNKVYYVEHSIYFSNTMEVYEDDTMQKPLVLETDYNFAEIDSIASEMSNIDCYKALTFNQRFEKVFIRYHSYGDLLSAEDINCIADGVNTLSEINEKQTQEFNTLVRNFEEHITNGKAHNATETVTGNSIAYRTEDGRLKAADAKENEDLVNLKSQTQAIQTSEERTQNKITEAKNELISDIETLTKKVKAENPTLTLQDFLPAGIDESSATDEQKQSAEQKLDERTAELNPYHNVIRNKNSSIEVPDAQTEAEAVNKKALDVVEVNVANLRTGLGEISNRVEELENKPAPGGDIYKFDGFETETNKIWRTDKTNWNGVVVKRVSIPIYFLKKGLGKPLDLKPLNIDTITSIEGVVTIGKETYPLAYAAAKNMIALNTTKAQLLFSAISTNCSAYIVLEYF
>NZ_CP042813.1|WP_148879403.1|707764_710041_+|hypothetical-protein
MPESIKIFAPNTQTGSVPDQIVYPYLYHIEQRLFIDEEINYRVFPEPYNIHRDNRIHQVKRQPYSHIGYIGKKADHSGSVTDCIKLYLPNTDTKKITIRTNPDRIIKEATVIAKTKNDTEITRYTITNNTRNEIVFPLKAENVGILELHVTKHTANKRIWIVSFYPGFEFFVTEKDVVKIKQQKKKTENKEGSIGRLYINSLEIELNNITRMYDDKNSESPIAGFFNANAIVSVALILNTRKNQKPFILNFGNFFVTDIDTNEQKISVTVKAQDYIGVRKNDYLNLGIGDKTNAYECFAKIANAINLSAIKVDEQLKRVALNRIPLNGNIGSLLNKLCVLTNAFCACDETGSALIATPMLSRHGAIRYPLRYFLLHEYKSQGGGQTKTLSPNIINLSYATYEYDGEYHAGKKQSYIYNERIPKREFPQDKIRIPLHERELGAGAEPSATFTILLPDNFEALEFSDPLIPKALEYETIYEYGAQEKPIRAIVKVWNFIDRDEGEQFTIIQMIREKPYNTILKTENFIVPKMPRTYIIPEKDPSLNSADAEAVESRNAHNKPEVFKIDLKDAASFDLIKIENIFKQTQFEFLYRITNEGIEVKAWNYFKENPQTLTVKIYGSRLTPSQFKKTITARNEDDIQVNGEIVKNIEVGALASDDIARDVLQSMSYYYRHFAKDFSVQAWSDPRLMLYDLIAFKSLRGYGFMQGIIDEMEYTYNGALAQKIKIKQTKKHTRDSRALKSFALKDRPVLAKREAGYA
>NZ_CP042813.1|WP_148878710.1|707068_707647_+|hypothetical-protein
MGLKSKLDEQLLELQKNLPSTLNADDALTNKNWNCVVTSIKAIYEALQAAASTPPSIPPIGFLYTRFPGMPLPWEQFTDTAPVEWKNLHEKYPGTFLRLAGGNASAFSGSGSVSYDSGVRGNGGGQIDAMQRHTHSYTYEGSNGVGSTKGVDAQYQWQQENKSSTTGSASGRETEETRPKNITVEMYLFVGQ
>NZ_CP042813.1|WP_081718619.1|717832_718048_-|hypothetical-protein
MSKSERARTPVVPRRNDVLKQSSLQSFKTRRCNFAMDGKITPTRRRSESQNVNTSPLLLCRAFQAYASPRF
>NZ_CP042813.1|WP_148878716.1|718154_718793_-|CBS-domain-containing-protein
MTTRTDIIAVEHDVSIDEIIQKFRESRFSRLPVYDKTNDSIIGIIHYKDVLFYKTAKKHDSIISLIRETTFVPETSNVFSVIKAMKNSKHNMAIVIDEHGGTAGLITMDDIIAAVFGTIQDEYGGASVNYGLRLIGKSRLHFSGEMPIAKLNEILHAQLSSEYYDTMGGLLLEAFEQLPAPNSSITINGILFTVKKVMNRQITSIIADIPQN
>NZ_CP042813.1|WP_052335669.1|719008_720262_-|ISNCY-family-transposase
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGAVAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGICSPKKRRTRKKVHKTRNRRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTKEQVTQFGKIIKYLGIDMFPAHSSQAKGRVERLWQTLQSRLPVEFARRHITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNHLFKIEQNKFGAGTMVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042813.1|WP_148878717.1|720420_721563_+|YibE/F-family-protein
MLSMYRKIFMPAVILISAALLLIMPRVWMPIRPASIFTQDFVQGRVEKVLSEDLTPDPILQNRFRGTQQLEVRLLDGVYKGQVHEVYNTLSSLHHTRAVAGMKALFTVRTENGKQHVWLYNQKRDGYLYILAGIFCGLLLLLGRWQGFRSIVALLFTGAVIVTVLIPCLFAGFSPVPISILLAGLITAVSFLLIGGFSRKTTAAIIGTIFGIGLAGAISLVTGYAAQLSGINMSGGEQLLNIARDYRLRLDGLLFTSILIASLGAVMDVSMSIASAMQEIYAADKSVSKKALFLSGLAVSKDVTGTMSNTLILAFTGSSLPTIMMIWGYGMSYRQFTNIPLIVIELMHGLAGSIGIIAAAPFTAAVAVFLLTEKTSVQKP
>NZ_CP042813.1|WP_044634932.1|721670_723560_+|2',3'-cyclic-nucleotide-2'-phosphodiesterase
MNHRKKLPFFAALLSAILFIACLGSNAGIQPDGRTARAKGKQFDTVQLEHKLITKGEAGADEVRLVFGATADVHGRLYPYDYAITEEDPDAGYSKTYTIVKEMRAKYPNMVLMDVGDTVQDNSAELFNDLETHPMIQAMNYMDYDIWVLGNHEFNFEKEFLVRNIKNFKGAVVTANIYNTADNSSFVLPYQLLNIEGVRVAVVGLVPPHIPMWEASSPSHFKGLSFEEPLTAVRKTVDSLKGQYDVLVGAFHLGRSPEYGSQGSAFSIAEAIPEFDLIFGGHEHARYVTEVAGKNGDKTWVLEPGCYGWALAVGEITVKKQNDTWKVVSVKAENKETEKIESDSELEKEFRFVHDESLADANTVIGNVTEDFIKRVDYITGKEEVTTMPTIQLEDTALIDFINEVQLKVAKADVASVAAFRADINLKKGSFKKKDVAFIYKYNNTLMGVNMSGENLLKYMEWSARYYNTTKEGDVTISFDPNIRAYNYDMFDGITYNIDISKPAGSRIVDAKINGAPIDPKKIYKVAVNNYRFGTLQKLGLATPEDVYFDSYETMQDAGRIRDLIVQHVKQKKNISPKVNNNWKLIGFNDRVEGREAVLEKIRKGEITIPRSKDGRTPNVKSINIKDIH
>NZ_CP042813.1|WP_148878718.1|723612_723819_-|hypothetical-protein
MVPSRIEFENYHSYINRSFQTHRFGFATDGKTKPLCRIDAVRYFQKIFTQYTADWAPEKAGPSHAEVL
>NZ_CP042813.1|WP_024752911.1|724515_726570_+|ATP-dependent-DNA-helicase-RecG
MRVAEIQVPVSHLPGAGAVTVTQLSRLGVQTVGDILLLWPRTWEDRTRVDFLADYDSVQKLQVRVKVVGQEWFGFGRMRTLKLIIQDECGSFAELACFNRNFLENAFPVGAEAVVYGSFYYKYGKLQSSAFEIEKPESAEQKILPVYPLTHGLGQAKLRKLIQTALRQYARGIDSELPAEVMEKYGLPTKQQILFFMHSPQTVQETEQARHALIFEEFFIFQTELGKRSIQRRGKLPYFSETESEFASSKPRQPVLTQLQQQLLKRLPFALTADQRTVTAEVNEDLEGTEPMARLIQGDVGSGKTLTAFLACLNVIEKGGQAAFLAPTELLARQHAENAAKLLEPLGVRLAFLTGNVKAKGRSHLLAALADGSIDLVLGTHALFSSGVSYKNLRLAVVDEQHRFGVLQRSAIIQKGVEGSKEKKPPHFLMMSATPIPRTLALSVFGDLDISVIKTMPEGRKPVITYVASQAKAEKVYTFIGKEIAAGRQAYFVYPLIEDSESLSLKSAEQMYQYLQQGFPRHKVALIHSKIPENEQKEIMEEFKAGKIHILAATSVIEVGVDVPNATCMVIEHSERFGLSALHQLRGRVGRGGEQAYCFLMYGKNITNDGKTRLSIMKETTDGFVIAEEDLKLRGPGDIGGIEQSGYLGFNLADPMRDYTLLQKARQAAFAILEKTMQKESEPL
>NZ_CP042813.1|WP_024752910.1|726639_728391_-|threonine--tRNA-ligase
MIQKKSERLDMIRHSTAHVMAAAVTKLFKGTKVAIGPAIDYGFYYDFELPRPITDEDLLHIEKEMRKIVNGNHDFTKEVVTRDAALALFKDQPFKTELINELPADEEISIYRSGDFVDLCRGPHVQNTKEINAQSFKLTKIAGAYWRGDEKRPMLTRIYGTAWEKPADLKEYLAMLEDAEKRDHRKLGKSLGLFHLDEENPGQIFWHPNGWALYLLVQNYVREKIKADGYLEVKTPFVMPQSLWERSGHWAKYRENMFITESEKRLFALKPMNCPGHIEIFKQGIKSYRDLPLRLAEFGSCTRNEPSGSLHGILRVRGFVQDDAHIFCTEAQISSEVKKFCALLKNMYADFGFAEDSILVKFSTRPEKRVGDDATWDRAEKALADACKDAGLEYEVAEGEGAFYGPKLEFTLIDSLGREWQCGTIQVDYQLPSKERLNAEYIGEDNQKHNPVMLHRAALGSLERFIGILIEHYAGAFPPWLSPLQAVVIPVAPTFNDYAEKTAKDLAAQGLRVKADIDTDRMNAKIRKYQEQRIPYQLIVGEKEAANGSLAVRIHHGDQKTMTTEAFVNFIKEKIATHAITAM
>NZ_CP042813.1|WP_024752692.1|728978_730235_+|HD-domain-containing-protein
MQVMKKKSLKKHKETLLSIIETETMLHSISDVDILLEQILTESRKVVQADAGSIYIAEDNQLFIHYAQNDTLQKNLPKGEKLPFVFFNFPINESTIAGYVASTKKAINEPDVYNIDPEKPYKFGKGSDETTKYRTVSILTIPLLAVSGRVLGVLQVLNAKDKKGNIRAFSTEDETYLNRFATNAGVALERAYLTRSMIMRMNKMAELRDPLETGMHVNRVANYSVEIYDRWAFLHNIPEDERNQYRDKLKIAALLHDVGKIAVSDAILKKNGKLSEEEYAQMQTHTWLGAKLFNPIETEIDKLSQDIALRHHENWNGSGYPGHICIETGKVLKTNPTTGKAQGLIGEEIPLGGRIVALADVYDALSSKRSYKEPWKEEDILALIKKERGLKFDPALVDAFFDVHSHILAIKARFVDVE
>NZ_CP042813.1|WP_002698451.1|730206_730674_-|hypothetical-protein
MRLLVDSDSCPAKIRSIICKTAKRLKVEAVFVANRPIPVANNPFCSFIQTGTESQAADIHILNTALSGDIVITRDIPLAKALIDKNILVINDRGTVYTKENINERLSIRNFMYKLQEYGLTPEKTKTFGKKEISDFAQALDRETTKLIRHQQNEL

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Crispr_ID: NZ_CP042813_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_5

1219871-1220005

Orphan

Consensus_repeat	Method
GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_5

>merge|NZ_CP042813|5|1219871-1220005|CRISPRCasFinder
GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTTTGCCTGTTTACGCTGGAGTACAGGCAAAACATCGTTTGGAATTGAGCAGGGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT

>NZ_CP042813|5|5|1219871-1220005|CRISPRCasFinder
GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT	TGCCTGTTTACGCTGGAGTACAGGCAAAACATCGTTTGGAATTGAGCAG
GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024752449.1\|1225160_1225664_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP042813.1\|WP_148878828.1\|1229798_1230770_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631
NZ_CP042813.1\|WP_024752439.1\|1210042_1210354_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752452.1\|1229013_1229817_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP042813.1\|WP_039915057.1\|1219434_1219674_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP042813.1\|WP_148878823.1\|1213760_1214582_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP042813.1\|WP_024752454.1\|1230766_1233172_+\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP042813.1\|WP_002698959.1\|1226982_1227399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878824.1\|1214610_1215639_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP042813.1\|WP_148879821.1\|1213563_1213752_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002698961.1\|1227991_1228519_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372644
NZ_CP042813.1\|WP_148879822.1\|1212105_1213314_-\|ZinT/AdcA-family-metal-binding-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878826.1\|1216224_1219050_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP042813.1\|WP_148878827.1\|1224192_1225161_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|223301
NZ_CP042813.1\|WP_148879823.1\|1210788_1211988_-\|ZinT/AdcA-family-metal-binding-protein	unknown	unknown	gnl\|CDD\|370371
NZ_CP042813.1\|WP_148883906.1\|1220305_1223860_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP042813.1\|WP_148878825.1\|1215635_1216172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002698960.1\|1227401_1227995_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP042813.1\|WP_002698949.1\|1219046_1219277_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP042813.1\|WP_002698955.1\|1225761_1225971_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_002698961.1\|1227991_1228519_-\|hypothetical-protein	gnl\|CDD\|372644	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies).	3.41865e-08
NZ_CP042813.1\|WP_148878828.1\|1229798_1230770_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	8.19321e-95
NZ_CP042813.1\|WP_024752452.1\|1229013_1229817_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	3.69613e-72
NZ_CP042813.1\|WP_039915057.1\|1219434_1219674_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	7.30117e-12
NZ_CP042813.1\|WP_024752449.1\|1225160_1225664_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	7.9898e-71
NZ_CP042813.1\|WP_148883906.1\|1220305_1223860_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP042813.1\|WP_024752454.1\|1230766_1233172_+\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP042813.1\|WP_148878824.1\|1214610_1215639_-\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	4.95849e-47
NZ_CP042813.1\|WP_148878827.1\|1224192_1225161_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|223301	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis].	1.06375e-119
NZ_CP042813.1\|WP_148879823.1\|1210788_1211988_-\|ZinT/AdcA-family-metal-binding-protein	gnl\|CDD\|370371	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment. ZinT plays a critical role in recruiting periplasmic zinc to the bacterial zinc-uptake complex ZnuABC, consisting of families pfam01297,pfam00950, pfam00005, regulated by the transcription-regulator FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), pfam01297. Members of this family of prokaryotic domains were first identified as part of the response of bacteria to a challenge with the toxic heavy metal cadmium. They are able to bind to cadmium, and ensure its subsequent elimination.	3.63479e-08
NZ_CP042813.1\|WP_002698949.1\|1219046_1219277_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	6.54277e-19
NZ_CP042813.1\|WP_148878823.1\|1213760_1214582_-\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	2.19476e-50
NZ_CP042813.1\|WP_002698960.1\|1227401_1227995_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	6.7097e-21
NZ_CP042813.1\|WP_148878826.1\|1216224_1219050_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	7.99389e-141
NZ_CP042813.1\|WP_002698955.1\|1225761_1225971_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.08952e-13

>NZ_CP042813.1|WP_039915057.1|1219434_1219674_-|ferrous-iron-transport-protein-A
MEFTLIPLIVLKTGEKASVLKFDGTGAEFTRLRSLGIDVNTELTVVTSQADKKGPMLLLVNGAKYAIDYNLASKIFVLI
>NZ_CP042813.1|WP_002698949.1|1219046_1219277_-|ferrous-iron-transport-protein-A
MTLDELEQGKNAVIENLEITGSTLQRLISLGFTPGAEVSVVRKAPFLDPFDISICGSLVAVRRDEAKRIIIRELAE
>NZ_CP042813.1|WP_148878826.1|1216224_1219050_-|ferrous-iron-transport-protein-B
MKQDQIHIAFAGQPNSGKSTLFNMMTGARQHVANYPGITVEKKTGNYQAFGQSVLITDLPGTYSLTSYSPEERVSRNFILFEKPNLLVNITDASNLERHLYLTFQLLEMQCPVIMYLNKTDIATYQGLKIDIDKLSQTLGIPIIAGSAKRKEHAQELKQCIAETTGHTQNPYMLSYGKDMEACLAAIVERLQKAQKNAEDAVPLRWLAIKLCENDSAVRNEQKEKFEEFDSILQYISELEAQHKEKHKHSFEIEIALARAGAAKKIIADCVTKVAADKKTVERVRLKRRIFEGLSALTLFFVTFQILDAVLVMFPGVFQHNSVRLCINLLLSGIFTGGAAFIYVKGGENAVNATDRVDKVLCHRVFGILILVELVLVFYWITVILGYKMTDKVFPVFKFFRSIVSQLIPAQGLISEGLLRGLFLNGIIDGAIMILNYVPIFFCLFALIAFLEDVGYMARLAFIMDRILRKFGLHGQSTLPMILSGVIMGGCVVPGVMSTRTIRDNKSRLVTILILPLLNCMAKIPFYVLITGIFFVRYQWLVLGGISFITLLVALIVAKYFSLYVVQGTPEPFVLELPAYSLPTVRGVLTRTFERLWSFIKKVATTVVAVSVVIWAGVSFPAMGEKEQAVFNTEKDTYIHNFVRSLNNSYAPYFASEKGFLDYQNLTERMYLLETLTSFGGEKAVARSMNRLFLENPEMTKIALRGKLELGDTIHAFKDYFTRYAAAEKDFINAYAQTPDFQKPIMKSAFYGYWQRMNPFFFAIVRTGSISISGTSVVDRDAAAMTRSLRTAFADLKLISVHHHRETLEHSALGYLGKGMEPVTKYAGFDWKINIAILGSFAAKEALVSTLGTIYSVESASEDSGKLLEARIQDKETGMTPLDGLTIMILIALFPPCIATMIATKTETQSIGWTAFSVIYPVVLSSLVAVFVFQFGRLLGF
>NZ_CP042813.1|WP_148878825.1|1215635_1216172_-|hypothetical-protein
MKKTYLLLVLIISAPVLFAHTPLLTVEDNGDGTIYVQGGFSNGASAAGVKLYLTDKNTGEKLWDGEFPAVGEIDLEIPAVPYTVTFDAGPGHVVVKDGPLYERGADDAPAQKDATENGGTVTAGSVAAPSASWVPMDTVSAMPSIGPSFTAIAALCLAILNLVLILFLFRKIKNRSSL
>NZ_CP042813.1|WP_148878824.1|1214610_1215639_-|DUF4198-domain-containing-protein
MKKLVLTAFLFTSAFFLFAHFQMIYTPSSIIEQNAKSADFILTFTHPFESGLTMDIGKNEQGEIKGLKEFYSIHKGKKLDLLSMIKESEFTSAENKASAYTFTLDKDSGFRGGGDWVLVAVPHPYYEASEEGYIQQITKVFINKAGLATDWQTACVKGYPEILPLVKPYDIWKGSIFRAVVLDSNGKPVPFAEIEFAHINYDVDMQAKAFTGKAKLEQAGGGIILADATGVFEFIPPCAGYWGFSALGVGKEKEFSGKALSQDAVIWIEINKDETEPPAASNENEEKTAASEETSASEKDREPRKDDFSPAALIIVILLFAVMFAWPPIFKKMSEKSEKKDS
>NZ_CP042813.1|WP_148878823.1|1213760_1214582_-|DUF4198-domain-containing-protein
MMKKNIGILLLLCAIGATVFAHHQMIYTPASIIESNEVNFKITFTHPFVSGHTMDIGKNEQGEIKGFEKFFSVHKGKIQDLLPSLKKTSFSSAENSALAFDLVLDKTNGFRGGGDWALIGVPYPYFEEAEDGYIQQITKVFINKAGLATDWKNRCAEGYPEILPLVKPYDVWVGGVFRGVVVDANGKPAPNIEIEIAYINYDVNMEKSAFEKTPKTSRGDAIILTDSNGAFSFVPTESGYWGFSALGAGNKKEFSGKALSQDAVLWIEASLPK
>NZ_CP042813.1|WP_148879821.1|1213563_1213752_-|hypothetical-protein
MVEKIIIGVAVLAIILLFVRKYYRIFTGKASACSCGEKNDMKNGCGCCCSACHDTKEKREEV
>NZ_CP042813.1|WP_148879822.1|1212105_1213314_-|ZinT/AdcA-family-metal-binding-protein
MVKKIIGIKRMSFFIFITVFFIACQSAPKSKTETIAAGNEMAAWKGEWVSLDTIKTDAALEDSYTEAAKNMAHYTVEGFKAAVADMYQTPVLKMKFDGTNTVILTVQNNKEAIVEVPCEYVYKGKVAVLGEKNRFWYTFQAAKDIRELKNAKYLIALPPEQDDSGILHWHARISSHDINWLVNGKKTWPTYVAESTPQEKKIQNLKESIRTLPARLPEKPFEQYADNGKWINRPAVFDNTSKEVSAAYEKIIKEFAGKNPKGGDFTKEEIIAEIKKNDKTLNTLDDFTHLSFLTEGKKNELIIYKGEKIVFQSEYKRVAQSTSRPYITMRAEKKDAGKFSLISFVVVHGAPMYHFHLWYGRNETDLENQEGVPTCFSTTKISNETLANYIEKTCRRTLTAEN
>NZ_CP042813.1|WP_148879823.1|1210788_1211988_-|ZinT/AdcA-family-metal-binding-protein
MSKKRIGTLLVPVFMALAVFFTACQSAPDAESGATPKTGELAGWKGEWISFGDTKDDPSLEAAYKETAEKMPNYTVEGFKAAFAAMYKTPVVKAKFDGSNKVKFTVRDADGKEEEIACEYKYIGKIPVPGYEGSSWEAFEAVKDVRGLSQAKYMVLFPPHSHDGGMLHWHARFGARSAEAIAKDTSFWWPTFVSASMSKEDLLKEAKEGIKAMGSMFDKSPFESYAAQGRWMNSSLIYDNTSKEVSNAFDKIIKEFAGKNPKGGDFSKADIIAEMKKAYGTTDDFSHIEFVTKKGKNELVLYKDGKEVYKAAYKRVADNPSKPGMLAVATDKGGKFKTISLTGAHGTPMHFHLWYGASDIDLTQFTTKPTCIPENTSNADIAARVEKSCRSVLNSILMK
>NZ_CP042813.1|WP_024752439.1|1210042_1210354_-|hypothetical-protein
MKKRNVILICLLAFGAAFLIAHTPLLLCYDNGDGTITCEGGFSDGSSAKGVEIRVVDNKNKVLIKGKLDKNSEFTFKRPKGNFSVIFDAGPGHVVKVKSEDIE
>NZ_CP042813.1|WP_148883906.1|1220305_1223860_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MSEKNLVMIDGNTAAGYVAHALSEVIAIYPITPSSPMGELADEYSAQGRKNIWGTVPSVVELQSEGGASGAVHGALTTGALSSTFTASQGLLLMIPNMYKIAGELTSTVFHVAARALATSALSIFGDHQDVMSCRQTGWAMLASNSVQEVMDSAVIAHAATLEARVPFLHFFDGFRTSHEIQKVEEVSYEVMQKMVNNTLVREHRTRGLTPEKPMIRGTAQNPDVYFQSREVVNKYYQATPAIVQKTMDKFAELTGRQYHLFDYYGAPDAEKVIILMGSGADTVEETVDALNEKGEKCGLVKVRLYRPFDASAFVKALPSTVTAIAVLDRTKEPGALGEPLYEDVRTAIGEMQFKKECPFTHYPLILGGRYGLGSKEFTPAMVKGVFDNLSGKKIANFSVGITDDVTHTSLDYDPSFHLDDKDMHQAMFYGLGADGTVGANKNSIKIIGEATDNNAQAYFAYDSKKSGGFTISHLRFGKNKIRKPYLITQSDFMACHKFTYLETFDMLKTLKKGGTFLLNAPYGKDEIWQKIPVEVQKQIIEKEAKFYVIDAMSIAEKAGMGTRINVIMQTAFFKIFGILPEDEAVGLIKKFTEKTYGKKGAEIVQKNITTIDMALAGLEKVEYPKTADSKVTRHSAMTADAPEFVQNVLGEMALNKGDELKVSQLPVDGTFPTGTTQYEKRSIAEHVPIWDSEVCIQCGQCVMVCPHAVIRMKAYDKKELDKAPKEFKSCAYKGKEFENAAFTIQVSPEDCTGCALCVEQCPAKNKADPTRKAINMESFVEHREVESKNWKFFVNLLDPDARKLNLSVPKGVSMKRPLFEFSGACPGCGETPYIRLMSQIAGDRAIIANATGCSSIYGGNLPTTPYAKRADGRGPAWSNSLFEDAAEFGYGMRLTSDKLAEYAREVAGQLKDKNIAADVIAKILANTQEEDSAVEDQRAFVADLRKELEKSSDPLAKEMLSLTDHLVRRSVWIFGGDGWAYDIGYGGLDHVLASGKNIKVLVLDTEVYSNTGGQMSKATPIGAVAKFAAAGKTTSKKDLGMMAMSYGYVYVARIAMGANMSQTIKAFREAESYDGPAIIIAYSHCISHGINMTKGMSHQKEAVSSGLWPLYRYDPRLVAAGKNPFQLDSKEPDFKLADFMYKEVRFKTLKNANPERAEMLLKAAEEKTRRQWQEYKYLADRPF
>NZ_CP042813.1|WP_148878827.1|1224192_1225161_-|methionyl-tRNA-formyltransferase
MLKILFAGTPECAVPVLHAIAQKHHIVGILTRPPAAVGRSKKLIPSAVALATEVLKSEKRISPAAPLFTPEKLNKDVREAIAAVSPDVMVCFAYGKIFGQSMLDLFPLDAINIHPSLLPRWRGSTPVPAAILAGDTKTGVTVQQMALEMDAGDILAQCTIPLDGSETAESLLNLCAQKSADLTLSVLQKITDKTLSPMPQDHSAATFCGMLTKEMGLINWHNSAEEIDRRHRAFVPWPGTFTYKNNEKLSIQALAIATSENTQNAEPGTILTADKKNGILVQTGKGIISLIQLQRTGKKSLYWKDFLNGSAEFLTGKFNASL
>NZ_CP042813.1|WP_024752449.1|1225160_1225664_-|peptide-deformylase
MEILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRLFVTGVNNEQRVFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTLQATGLLARVIQHENDHLDGVLFIDRIDEKLREEAIKLFEKKKKPIKKKAAV
>NZ_CP042813.1|WP_002698955.1|1225761_1225971_-|30S-ribosomal-protein-S21
MAYITVDDSENLEKAIKRFKRQVEKEGIIREWKKREYYEKPSTILNRKKKALQRKLMKKNRKTYDSKAY
>NZ_CP042813.1|WP_002698959.1|1226982_1227399_-|hypothetical-protein
MNTECFYAIVLPGNLLSVLYEEQRLFQTLIESQFRKMPPFLKYEKRYDQSVLKISAPELRDGYLIRQCSMQGEKLSECFVLGFGGVHAEKLIKTMPELKAQSKVQNIFLPLQCSNWRLAKVELTHYGTYGICWKLREL
>NZ_CP042813.1|WP_002698960.1|1227401_1227995_-|MBL-fold-metallo-hydrolase
MKIYFHYSIGSFTNSYLVGNEKTSEAIMVDPGRITTEIIHNIEKNNFSLRAVFITHCHATYYDHGLQTIMNVYQPEVFAADTEVDTIKTSVLRGDGLIERAGFTIEYFSVPGYSPDSYMFKIQNVLFTGDSLSAGMIGETANIYAGKNLLKNLHTKILCQDENIILFHGHGPPSSLKSELLYNDELHYPYVSLQPQG
>NZ_CP042813.1|WP_002698961.1|1227991_1228519_-|hypothetical-protein
MFSTNCVLTKDVFLKEYGAEKNINSVNVSDQVFENIDFSEKILTGTCFSNSVFKNCIFDGIRMRMSFFEFCQFQNSSFKNSDIQFSSFSGSSFEKVSFKNSVLLHNNFNGIRADETVFDDSDLYNSRFIAAKLKLTGFNNCNIRKTRFFKNTYDAVSFKSSNTREAFFGKGENPE
>NZ_CP042813.1|WP_024752452.1|1229013_1229817_+|glutamate-racemase
MTKKNEQYQYAFIDSGTGGLPYLQYLHELEPDASMVYVADNAHFPYGKKTKEEVIAFASETVEKLIARFNPEIIIVACNTMSVMALDSLRKKFTLPFVGTVPGIKLAVKQSRNKRIGILATERTVCDPYTERLIEEFGSGCYFEKRADQELIAQIEDGLITDSYEEKLKAIQPALEQFKKANTDSIILACTHFLHIEDVFESAAGSDMQIIDTRSGVIHQALRIAPCKKNPDAPPNSCYATAALDTHIEEQYRMYSKLFQLRWGGAL
>NZ_CP042813.1|WP_148878828.1|1229798_1230770_+|ribosome-small-subunit-dependent-GTPase-A
MGGGSLIRGKVLCGANNFFDVSCEDGTVRYCSIRGKKLEDPVGYYNPLAPGDFVLVDEDTHDKEKGQIVSLEKRKNHFVRWNQKTDKPQILACNIDLLVCVTSPANPPFRPRFIDRVLVQAEAEQIPVLIVINKTDLDTTDEVRLRINDWERIGYETLKLSALNNTGVERFAKRIEGLTVAIIGQSGVGKSTLLNSLDPTLNLRTAEISSKYDRGIHTTTQGILLKATHRFRDGTESKTEVIDTPGIRHFAIWGMKPDELALYFPEMQKLLGTCTFGLSCSHTHEEGCAILHALENGGIHPDRYESWRLISEELEALTAEDYS
>NZ_CP042813.1|WP_024752454.1|1230766_1233172_+|endonuclease-MutS2
MTEHTLEVLEFNKICAAIAAYCVTEEGRAACLQKKPLTDKEKITAEKKLGSDFLSLLQTGAEPPVKKRPPLIEFLQSLGKEGSALSIEGIYSIGISAKHCNELHAWADAFEKANANKTPQQDVLQFIRTFPNLLEVYKAVFSFIDEDGDLKDIPELRSIKNKIAAIESDIEKTMRSYFTDEHTRDLLQTNIPVLRNGRQVLSVRSNFKGRIKGIIHEYSQSGQSFYLEPEEIVFKNNELLSAHAEYDRELQRLLKELTAKIAAYAPALEELSEKLIALDCVSASAKWAKNFHCVFAAQPQKDTAAFFLHQARHPLLGKTAVPIDLKLVANDRLLIITGPNTGGKTVSLKTAALFALMNQTGWPVPAGAQTCLPYFNFIACDIGDEQSLEQSLSTFSAHMQNIAEILRSADKESLIILDELASGTDPLEGGAIAMAVLDELAKRDALVFVTTHHGSLKNYGYTKQNCVNASVEFNESTLSPTYKIIMGVPGESHAIDIAERNGMPQHIIAQARAYIQDNRADVSALIQSLVQKHADLNKFEEEKQIEQQALRSDRRRIDLKELQLKQKELELRKQGYKRLDNLFSDKRRELENLIREIKEGELTSEKTKKVKQWFDNFESELAEEKTGMREENAELTALIKKRSDKNKHQTPQTPFTEGMTVYVSSFRRKGTLIRKEKKDTWLVSFDTVKMVVFENDLQPLESEQQKKQPVQIITEISSDKRPQFELRLLGLRIEAAEKALQDQLDLSAMHGIKEFAVIHGKGSGILQTMVHEKLKQTTFVQNFYFARPEDGGTGKTIVHLE

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Crispr_ID: NZ_CP042813_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_6

1712552-1712662

Orphan

Consensus_repeat	Method
GAGTTTAAAAACTTCCTGTTATAAAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_6

>merge|NZ_CP042813|6|1712552-1712662|CRISPRCasFinder
GAGTTTAAAAACTTCCTGTTATAAAAAGAGCTTGACACAACACAACGGCGAGTAAACTTACCATAGGCAAAAACTAAACCCGAGAGTTTAAAAACTCCCTGTTATAAAAAG

>NZ_CP042813|6|6|1712552-1712662|CRISPRCasFinder
GAGTTTAAAAACTTCCTGTTATAAAAAG	AGCTTGACACAACACAACGGCGAGTAAACTTACCATAGGCAAAAACTAAACCCGA
GAGTTTAAAAACTCCCTGTTATAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_002694935.1\|1715313_1715697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381097
NZ_CP042813.1\|WP_044634558.1\|1709572_1710739_+\|amino-acid-racemase	unknown	unknown	gnl\|CDD\|143486
NZ_CP042813.1\|WP_148878945.1\|1718132_1718933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878942.1\|1712241_1712427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878941.1\|1708213_1708405_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878940.1\|1705648_1706026_+\|DUF2620-family-protein	unknown	unknown	gnl\|CDD\|378513
NZ_CP042813.1\|WP_148879427.1\|1704244_1705603_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|179620
NZ_CP042813.1\|WP_002694939.1\|1717248_1718127_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP042813.1\|WP_024752608.1\|1718944_1720228_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP042813.1\|WP_024752615.1\|1708477_1709572_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|99742
NZ_CP042813.1\|WP_148878944.1\|1714188_1715317_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP042813.1\|WP_024752616.1\|1707329_1708217_+\|hydrolase	unknown	unknown	gnl\|CDD\|182128
NZ_CP042813.1\|WP_024752613.1\|1710732_1711947_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|237085
NZ_CP042813.1\|WP_024752610.1\|1715680_1717252_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148878943.1\|1712718_1712934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752607.1\|1720897_1722244_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP042813.1\|WP_024752617.1\|1706022_1707333_+\|membrane-protein	unknown	unknown	gnl\|CDD\|378495
NZ_CP042813.1\|WP_002694945.1\|1720220_1720901_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP042813.1\|WP_148878942.1\|1712023_1712209_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_081718740.1\|1712864_1713443_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_044634558.1\|1709572_1710739_+\|amino-acid-racemase	gnl\|CDD\|143486	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	8.03611e-180
NZ_CP042813.1\|WP_148879427.1\|1704244_1705603_+\|serine-hydrolase	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	4.61797e-82
NZ_CP042813.1\|WP_002694939.1\|1717248_1718127_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	8.72968e-116
NZ_CP042813.1\|WP_148878940.1\|1705648_1706026_+\|DUF2620-family-protein	gnl\|CDD\|378513	pfam10941, DUF2620, Protein of unknown function DUF2620. This is a bacterial family of proteins with unknown function.	3.72514e-52
NZ_CP042813.1\|WP_002694935.1\|1715313_1715697_+\|hypothetical-protein	gnl\|CDD\|381097	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY. The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.01278e-05
NZ_CP042813.1\|WP_024752608.1\|1718944_1720228_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.3888e-79
NZ_CP042813.1\|WP_024752615.1\|1708477_1709572_+\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|99742	cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).	9.8039e-05
NZ_CP042813.1\|WP_024752616.1\|1707329_1708217_+\|hydrolase	gnl\|CDD\|182128	PRK09875, PRK09875, phosphotriesterase-related protein.	4.0369e-95
NZ_CP042813.1\|WP_024752613.1\|1710732_1711947_+\|phosphopentomutase	gnl\|CDD\|237085	PRK12383, PRK12383, putative mutase; Provisional.	0
NZ_CP042813.1\|WP_024752607.1\|1720897_1722244_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.23858e-73
NZ_CP042813.1\|WP_024752617.1\|1706022_1707333_+\|membrane-protein	gnl\|CDD\|378495	pfam10797, YhfT, Protein of unknown function. This family is conserved in Firmicutes and Proteobacteria. The function is not known but several members are annotated as being homologs of E coli YhfT, a protein thought to be involved in fatty acid oxidation.	0
NZ_CP042813.1\|WP_002694945.1\|1720220_1720901_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.92004e-98
NZ_CP042813.1\|WP_148878944.1\|1714188_1715317_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP042813.1\|WP_081718740.1\|1712864_1713443_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.29182e-15

>NZ_CP042813.1|WP_148878942.1|1712241_1712427_-|hypothetical-protein
MPRTAKSERARTPVVPRRNDVLKQSNLQSFKTRGLVFATDGKIRTGTDARGSTQKRCFKAK
>NZ_CP042813.1|WP_148878942.1|1712023_1712209_-|hypothetical-protein
MPRTAKSERARTPVVPRRNDVLKQSNLQSFKTRGLVFATDGKIRTGTDARGSTQKRCFKAK
>NZ_CP042813.1|WP_024752613.1|1710732_1711947_+|phosphopentomutase
MVKRFVVIVLDGFGVGAMDDAPMVRPGDERANTLRSIINDNPDLKLPNLEALGLMNAYGRESNSMKFYPTANYGKINLMHYGADTFMGHQEIMGSLPKKPDIHPFQEKVDEVAAYLVSKGHTINVIEQEGLRFLLCDSYVTIADNLEADLGMCYNVTAPLDYISFDNEYEIGKLVRDVVTVGRVIVFGGTGNTMQDLWNAQEIKNGKFIGIASAKSKSYEQGYRCLHLGYGVDKNVQTPTILGRAGIPVTLIGKVADIVANDQGRSISCVPTEDCMRHTISEFKNMDTGFICTNIQETDLAGHSMSSKTYKEILEISDRSIGELLKFFKEDDILLVMADHGNDPNIGHSKHTRECVPLLVYKKEVHGKKLGTRNTLSDVGASICEYFKVEVPENGISFMQLLNT
>NZ_CP042813.1|WP_044634558.1|1709572_1710739_+|amino-acid-racemase
MFLNQIEKRNRQLVKTAFLLHQNQEILPDSYIVDVDVFLENAELILKSANEKNIKLYFMLKQVGRNPYLASELMKLGYSGAVTVDFREALVMMRHKIPIGNVGHLVQVPQAMIKEIVAYKPEVITVYSKEKIQAIEDAAKELRIKQGIMLRVYGDNDTLYSGQMAGIHLHELKETVLWIKSNCLHVEIKGITSFPCYLYSEKDKDILPTANLGTVQFANEILKTCGVTAQIINTPASTCCRTLNQMLKYGGNCGEPGHGLSGTTIMHADFELEERPAVVYVSEISHNFGGNAYCYGGGYYRRSHVKNVLVGISYEERRRLLVIPPTHESIDYHLGISDECKIGDTALMAFRFQIFSTRSDVVLVKGIQHGKYEIVGIYDSHGRKKEEL
>NZ_CP042813.1|WP_024752615.1|1708477_1709572_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MRTYPLRSLSLNEAIRLQFKVVDCITREFEGHTFLNRGDLGVVEGFNKPVTTAKAEKVIASIFDAEACILLRGAGTGAIRFGLHSMFNCGDKVLVHAAPIYSTSKTSFDMLGLIPIEADFNEIDEIKKALKNNSDVKGVLIQHTRQKPDDRYDMHTVIETIKTMRDIPILTDDNYAVMKVKDIGVQCGADVSCFSSFKLLGPEGVGVIVGEKLYIDRLISESYSGGMQVQGHESIDVLRGLTYAPVSLAIQAQVNEECVGRLKSGEIPLVKDAFIANAQSKVILVEFSDTIAERVLIEAEKLGAAPNPVGAESKYEITPMFYRVSGTFLKVDPTLKDRMIRINPMRAGADTILNILRESVERAR
>NZ_CP042813.1|WP_148878941.1|1708213_1708405_-|hypothetical-protein
MISSINFLIHLIRTINNFIKESSTRRNGGQFTIGMLNLQVIIGNTLIIIQGVNYRISYSSRII
>NZ_CP042813.1|WP_024752616.1|1707329_1708217_+|hydrolase
MKLLNGYTLMHEHVTIDLSGVKKDYDCRLDCFDETVKEFKTLYEYGVRNILEVTNIGMGRDVNYIRRVADATGINIIVSTGFYKEPFLPDCVRSNSVKELADIVIKELTIGIEDTGIRADVIGEFGTSKDEMTLMEQKVFDAMAIAAVKTKALVTTHTTLGSIGDKQADYLIAHGVDPKKIIIGHMDLSQDMEYMISVLKKGVTIGVDTIGKLNYCPDTFRVDALKRIKDEGMLSQVVLSMDITRKSSLKYRGGIGYTYIFEEFLPMLKKSGFTKNDIDELLLSNPKRIVSQCGI
>NZ_CP042813.1|WP_024752617.1|1706022_1707333_+|membrane-protein
MSYLVIALIGAFASVLSNQGIAVFNDGFRPIVGQYFNKEISRKELAAMSFAISFGLVIGFGIPTSIAASIILIHCLLLTTDIIGSFCPDTKLGMILSAVIGAGYGLGILLGLEFVVNLFAQMPYNFTKELGSVSAYVTVAFAVFPAISVAEQHGFKKGAITAAVSVLVYYLIKKFGVFSISGKPVRLNAEGMAMLIGMLLMIFYAAQKKGTDANNEALTIGFEGNVARIRKNWPFLMVMGGLIAVGTSMSMIAGDPVSLALLGKGEYTNAALTALARAIGFVPLVFTTAIVTGVYGAAGCTFVFVAGLLLHGNPIAAFLVGVVIMLAEIALINLFAKGMDRFPGVKDMGEYVRTSMNKVLEVSLLAGGIVSAEKMAGAASGYSGIGALFVIGAFLLNKKSKKPIVDMAIGPVACIIFGILLNVLTIIGLIVAPEVK
>NZ_CP042813.1|WP_148878940.1|1705648_1706026_+|DUF2620-family-protein
MMRIVIGGQIDKDGIASIVKAQLKDRAEVTIEGDLNAVIAMKAGKYDYYIGACNTGGGGALAMALAILGRSKCATISMPGQIKSDAEIEQEVQAGKVAFGFTAQHKEAVLPILLNAFVTKEEERV
>NZ_CP042813.1|WP_148879427.1|1704244_1705603_+|serine-hydrolase
MKKLKAVLVLSVIIVISAFLVSCGKTLEKTVTTQDKKIQEDMHLPKELDASLDTKIDGIVQKYIENGTITGGVILASKDGKIVFEKAYGYAHLYELTDVRDLANPKAKRLKTPQTTELNTLYDLASCTKVMATTQSIMKLYFEGKLTVTDKVAKYLPEFAQNGKENVTIEQLLTHTSGLPQWKPTFLYVNKDRNAELQLIEQLPLIFKPGEVKYSDFGFMTLGFIVEKITGMGMDAYVETEIYKPLGMTNTMYKPLDKGIPKNRIAATSWGNPFEYRMVDEERFPDFGYDCTEDKEAFKKFKGWRTEVLTGQTNDGNTAMANDGVAGHAGVFSTAEDLAILGQLMLNGGTYNSITLYDQKTIDLFSANHLGENNRGYGFEMKKKYMGKMATDKMFGHNGFTGTHVTFDKENNMQIIVLTNKQNLGLTKAGKYHSTFDLAAEVADVFVEKLTK
>NZ_CP042813.1|WP_148878943.1|1712718_1712934_-|hypothetical-protein
MPEDFFVLPFSAYNTLLGAFVGVFLPMVSLLTVAKFQTMFCLRFYCKQAKLRTGTDARGSKQKRCFKARQL
>NZ_CP042813.1|WP_081718740.1|1712864_1713443_+|DDE-type-integrase/transposase/recombinase
MRRRKHPKEYYKQKKEERKNLPANILNREFVATAFLSKLVTDISYFRVKDGWLYLSAILDLYNREIVAYVCSRHVDAKLAVDTVTHLAEKYSLKEVLLHSDQGATYTSHAYRIIRWHNTNEQFTVKEYYVRKRRKYFDIWIRKDGSGLKAIFIKDIIYLLYKTKVIEEYCKVNSSSLIEYEISKGLYLNPTS
>NZ_CP042813.1|WP_148878944.1|1714188_1715317_+|peptide-chain-release-factor-2
MLLEEYKSKISELRAQVAEIWRHLDSDTIYEKIKEKEDFSASEGFWNDTAKAEKVMSELKVLRSRVEPWRELQTDIEDLQALYDLAEEAEDEQMTDEIDSVYQKLSERFEKLNVLHLLSGEVDANDAFLTIHAGAGGTEACDWAQMLTRMYLRWAERNDYKTETLDMLEADGGIKSITLKVSGEYAFGFLKGENGIHRLVRISPFDSNARRHTSFTSVYVFPVLDDTIEVEIRPEDLRVDTYRAGGAGGQHVNKTDSAVRLTHLPTGIVVACQNERSQISNRATAMAILKARLYEYYREEKEKDNQKFAAEKKDISWGNQIRSYVFQPYTMVKDHRTKYETGNIQAVMDGDIDGFMEEYLQKNVLEASADEDDFI
>NZ_CP042813.1|WP_002694935.1|1715313_1715697_+|hypothetical-protein
MICIVCTSAYLGNRMADALRRRGEQVCTYTENIRKKSGLLQNMTRAFSCDWLMQMLQTEEVSRVYFDCAYFTDSATFRKISPHTKFIALSSLFEEARINMALCCGAKDFLMQPFSTDDFDEVYERTK
>NZ_CP042813.1|WP_024752610.1|1715680_1717252_+|hypothetical-protein
MKEQNKWRTLVLILFLFSTLPFFGQEKKDDNWVLAATEFSIQDLPELYKEYAITVPKMVLLYLDTDMRRTVPMDEKKARSLLETGQKKLKLIKERAALIKEKDTLFLSVESKAAKKKQLKKLEKDIKKKEQEIERAKENIKIADARQFSKEDIKTVSLWKTGSDLFNTEKHTNLAEKLQEQKISALVSGTLKDIAGYLSVSVSITTGLANMPQYHFSDAGKYEDIQEIVKNLSEQMQMVIQNAKPVTVYFDIEPKTASVYIQDKKIEDFSKPIILYKGSYTVSASATGFISATQDVQIKDDTLYSLKIALKKMTAKTVTFYIPKGQADIFFDTKYFGLTPFDVQLYGDKNLLDISHNGVRTFVLVNSKKIKDIRGSVPITASLNKITTKDKIEKQRKVLYWSLGAFYIALPIDMILRGVLADKRNAYESGRLPQTDKNASSIKALSISSNVMQGVTICLGVNYFIQLIRYLVAADQSLPKEAIPTENVPVQRKKTSSALVEKSDLQTDAKQDLSQQPSGGKTQ
>NZ_CP042813.1|WP_002694939.1|1717248_1718127_+|signal-recognition-particle-docking-protein-FtsY
MTKRRFSEGLKRLFGMHINLDDSFFENLTDSLVEGDVGAKTAFDIETLLRQECKKQKAETKDDIIRILTGILTPLIKTVTFMPEEKKTSVYLILGVNGVGKTTSIAKIANYYNKILTMPIVLAAADTFRAAAIEQLQYHGKALGLRVVAHQHGGDPGAVVFDAAEAIKAQGGGLVLADTAGRLHTKENLIRELGKIDKIAESKADTGCYKKILVLDATTGQNAFRQAEAFHEAISIDAIMLTKYDSTAKGGNAITISKELNIPMLFIGTGEQYSDIAPFDTKEFIKEFIGRD
>NZ_CP042813.1|WP_148878945.1|1718132_1718933_+|hypothetical-protein
MQIRIAIFCFLFIISSIFLSADEKQSNANSRSSQSENNTTAKESDNQQKNEAETLDTAKKESDTEADQTSKKNELPTESDKNTSEKKEALKTNKLSGFSSIEDTGLTLADNDTWYYEEFDSLGRPSLAVLYSGANLAEKTEWKYESESLYPYSQTVTKDKQHVMTKYSAAGFLILKEVYNADKGLEQKIENTYNAKNELVSREETKGDVLYRREWTYEKGKKKSEIVYRNTVLQARIYFFDSYKMVHVYENDKEILKLKEALKEDR
>NZ_CP042813.1|WP_024752608.1|1718944_1720228_+|ABC-transporter-permease
MKLKSFQWIYFILKRFNAADTRGRSAITGIFSIAGISLGVTALIVILSVMNGFQMGFIDAILQVSSAHLRLSGAKTDIEHAEKFGGYVSFYRFSEAQTLMEGNFSRQQGALLRAVPTDLRAKDSGFNEIVKIMSGTFDLEKKNTVVLGYELARQLSIKTGDIITVLAVSGSSDTNIFPENNQLLVTGTFKTGYYEIDASFAFVSLETGTIICGESETYNAAVKLENPEHDSKYLHSLQKTIPSLHAESWRTYNRAFFGALRIEKNMMMLLVILIFLVVTVNIYNGMRRSIYERREEIAVLASLGARIQDIRFLFMCNGFTIGLIGGIIGLLLGLLLSAQINEVFFLIEVSINIIIHFIGSLVSNITEMPFAIFSPEYFYNVETIPVRIFFKETVFIFLFGVFSASSAAWFAARKILTLKPAEVLRYE
>NZ_CP042813.1|WP_002694945.1|1720220_1720901_+|ABC-transporter-ATP-binding-protein
MNNPVLSVNNLYKSFTSASEDLHILTDLHLEIPSAAKIAITGESGCGKSTLLNIIGGMEAADSGKILAGSYNLLSLTEAELTEYRRHFLGLIFQFHYLLKDFTALENIMLPALIAGKNKKEIKERALSLIADVRLENRKDHFPAQLSGGERQRIAVARALINDPMLVLADEPTGNLDPQNAASVQDLLFSLTDKHGKTLLIVTHDPGIASMADSCYRLEHGKLVAV
>NZ_CP042813.1|WP_024752607.1|1720897_1722244_+|ABC-transporter-permease
MIKVPFLFALRFLGIGSGRSESNARKSLFGAVLGIGVSIIPLVIVLVVSDGMISGITSRMIELGSGHLQFVDLRPSTNYKNPQESYNQLQNNYATFKENCSNEYITGAWMQVNGNGIVIGKNGRKGGNIRAVSDNFFTENQAASQLLTVVAGSLEFTEKNSILLGKKIAEDLGITAGDSCRILTLFPSPTGKSIPKLFVGKVSGVISSGYQELDALWVFMPLETGMKILSPDAALASILVQTKDPFDQAAMQEIIQTGMSNLPRGYSPFSWQDMNRSQFHSFQTSKNILLFIMFLIVLVASANISSALVMLIMERRKEIAILKATGTKPETIIFSFLLAGLATGLGGLAIGMPIGITLSIHINEVFKYIEKTINALNMLLALSMGQSTATGEIHLLDPAYYLEYIPIVLNLNELYLIVSGTLILSVTVCMIPSIRAGKEKPIDIMRKL

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Crispr_ID: NZ_CP042813_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_7

2132689-2132837

Orphan

Consensus_repeat	Method
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_7

>merge|NZ_CP042813|7|2132689-2132837|CRISPRCasFinder
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAGCACTGATTTAATCAAGAATACTAAAAATCAGGGCGTGGCGGTGGTTCCACGCAGAAGCGATGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG

>NZ_CP042813|7|7|2132689-2132837|CRISPRCasFinder
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	CACTGATTTAATCAAGAATACTAAAAATCAGGGCGTGGCGGTGGTTCCACGCAGA
AGCGATGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024752013.1\|2124664_2125537_-\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|223139
NZ_CP042813.1\|WP_148879026.1\|2134513_2135173_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP042813.1\|WP_148879025.1\|2127310_2127493_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879432.1\|2129267_2131343_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042813.1\|WP_024752010.1\|2120331_2121528_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NZ_CP042813.1\|WP_148879431.1\|2125549_2126530_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP042813.1\|WP_148879028.1\|2137632_2139594_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NZ_CP042813.1\|WP_002699726.1\|2126575_2127049_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NZ_CP042813.1\|WP_044634284.1\|2121528_2122329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_039943365.1\|2144118_2145411_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181512
NZ_CP042813.1\|WP_024752020.1\|2142616_2143324_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP042813.1\|WP_148879027.1\|2135348_2135633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752012.1\|2122386_2124075_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP042813.1\|WP_024752017.1\|2135963_2136446_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP042813.1\|WP_002701529.1\|2136442_2137636_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP042813.1\|WP_002701542.1\|2133641_2134103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235846
NZ_CP042813.1\|WP_024752009.1\|2118939_2119920_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239487
NZ_CP042813.1\|WP_148879029.1\|2139702_2141421_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|273349
NZ_CP042813.1\|WP_002701550.1\|2131716_2132244_+\|dentilisin-complex-subunit-PrcB	unknown	unknown	gnl\|CDD\|379569
NZ_CP042813.1\|WP_002701539.1\|2134152_2134521_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024752013.1\|2124664_2125537_-\|NAD(+)/NADH-kinase	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	1.40201e-75
NZ_CP042813.1\|WP_148879026.1\|2134513_2135173_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.4682e-42
NZ_CP042813.1\|WP_148879028.1\|2137632_2139594_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	8.10475e-133
NZ_CP042813.1\|WP_148879432.1\|2129267_2131343_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	4.32579e-53
NZ_CP042813.1\|WP_024752010.1\|2120331_2121528_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	1.64558e-21
NZ_CP042813.1\|WP_148879431.1\|2125549_2126530_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	1.15559e-44
NZ_CP042813.1\|WP_002699726.1\|2126575_2127049_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	5.67371e-47
NZ_CP042813.1\|WP_039943365.1\|2144118_2145411_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	7.42202e-161
NZ_CP042813.1\|WP_024752020.1\|2142616_2143324_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	6.28896e-40
NZ_CP042813.1\|WP_024752012.1\|2122386_2124075_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP042813.1\|WP_024752017.1\|2135963_2136446_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	5.98843e-55
NZ_CP042813.1\|WP_002701529.1\|2136442_2137636_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP042813.1\|WP_002701542.1\|2133641_2134103_+\|hypothetical-protein	gnl\|CDD\|235846	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed.	5.18759e-12
NZ_CP042813.1\|WP_024752009.1\|2118939_2119920_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239487	cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.10493e-18
NZ_CP042813.1\|WP_148879029.1\|2139702_2141421_+\|potassium-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	6.04213e-93
NZ_CP042813.1\|WP_002701550.1\|2131716_2132244_+\|dentilisin-complex-subunit-PrcB	gnl\|CDD\|379569	pfam14343, PrcB_C, PrcB C-terminal. This domain is found at the C-terminus of Treponema denticola PrcB. PrcB interacts with the PrtP protease (dentilisin) and is required for the stability of the protease complex.	1.83249e-13

>NZ_CP042813.1|WP_002701550.1|2131716_2132244_+|dentilisin-complex-subunit-PrcB
MIKKHAVLFVGFVLISGISLYSYEENLLDLDAQSSATQKNEHFDAAYTILDSGVYSTVRYPKTVVIRNKKTWDKFLKNYNSRLNMAAPDFSKHAVIAVFAGEFSTGGYNLFVESIEKDDDDNELEISFKLSYPSPNETVTQAFTYPFIVVAVEISPHVKIDVDLPDTLEEKMKKF
>NZ_CP042813.1|WP_148879432.1|2129267_2131343_+|HAMP-domain-containing-protein
MIARFSLKYQLLLLVLPLSFFLIAFSLLWYYEASRIIKNNITDKMESKKELYHKSIELFLTQRATIIATLGSVIALNNADTDEMLELCTGCDTAFHHMIFDVYLGFEDGRYIDSSGWKPPAAWDARKRPWYKKALKKKGVAFSEIYVDSVRNIPMVSISIPVMQNKDLLGVLTTNVDMSKLKEMMTKINQGNNTTDIFLLDENGKFLFHNTFTYSDVITEVENKKYANCIKQIFDKDITEFSTVINGEKYFFIKDHFSAVDWTLAIGIPYVDLYRDVTNLRNKGNIFAAVFICLYIAITWIMASLMTKQLNALVSALKNIAEGEGDLTVRLPLIGNSEITDLSRYFNQTIEKIRLSIKSVSENTDALRAVGENLANNVTETASAINQINMNIDNVKEQSLTQAASVSETAATIEEIIRTIKQLNTGIETQSASIIQSSSSVEQMVTSIGQITETLEKTNTVIKDFASATEDGKNTVSESNAVMQKIAEESGGLLEASTVIQHIASQTNLLAMNAAIEAAHAGDAGKGFAVVADEIRKLAEESNTQGKTITTTLKALSGEIETLSNSAKKAEEKFNIIFELSGQVQHMSDRVMEAMQEQANGGAEVLTAIKNINSVTTEVREGSHEMLIGGQGVAEEMRKLDKLTRTITYSMNEMASGALQINAAVKDVNEISQKNKESIVNLSVEVEKFKV
>NZ_CP042813.1|WP_148879025.1|2127310_2127493_-|hypothetical-protein
MAKPTLRVLKLCKLFCFKTSFLLGTTGVRARSDCSSGILAYRGWGCEFKSFNFTIGCWRF
>NZ_CP042813.1|WP_002699726.1|2126575_2127049_-|chemotaxis-protein-CheW
MAMTDAQFQLVTFQLGEELYGVDIMDVKEIVKIQDVRPIPNAPYYVEGIFNLRSEIIPIISLHKRFHLKKAVLDAGDEYLGGFIILHIDNNKLGIIIDRVARVIMVKQGDVQPPPQMITGIGTEYIHGVVRQGSGYLIMLDIRKLFNPKELQKLANL
>NZ_CP042813.1|WP_148879431.1|2125549_2126530_-|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MDAVLTCMVEEKIGPGEANQKLIRLIKDSFQVEGAATFRSPAIALAYALRALGLEPGSGVLLSVLAPAWQFTEVQRQGFTPILVDVDAETALMTPSLIADGIQAGGKVVVLHEALGNLPNMQEVLSLNIPVIEDISQSAGAELGEKKSGCFGVFAILGLEERDILTAGGGAALLSAERRNALVLKKLYDVAPPTDILPDINASLAFVQLKQMEKNMQLRQELYELYVRFLMQGRHKTIAPAEGLKNPVYSFPVLLSSGYKDVKQFANKKGVETEPAFSGSIIDTFEKQEEYIQAASLLLRCVLFPLYPRLGMANAEKISKVLRSLP
>NZ_CP042813.1|WP_024752013.1|2124664_2125537_-|NAD(+)/NADH-kinase
MGTTDSRVIIITSTYKPHAVKLSKDIIKFLEARGFSCDQYEYDGMSSENPVKQDYAFAICLGGDGTVLFASRCCAARKIPVFAINFGNFGFIAVVEPEHWQTVLEDYLAGKIKIFERMLLSACILRKRQEFCVFDALNDVVISGSGIAKLVNLEVLFNDVSFGTYKADGVIISTPTGSTAYSAASGGPILDPNVSAFVLTPIAAFSLSNRPIVLPAEGKMTVKVLPTRHRDTILSVDGQELFVLEENDIVSVSASVHKAHLIGCNPEMFYRALRSKLAWSGNSTCPVPIR
>NZ_CP042813.1|WP_024752012.1|2122386_2124075_-|DNA-repair-protein-RecN
MIENIIVKNIALIDSLSLDFASGFNVLSGETGAGKSILIGALSFLLGGKAGTDILRTGAEEGWVSGSFYLDPQHKAATAWLAERDIEPENGRILLRRSIKQNGRSAAWIQSYPVARTDLEVFTSFLVDIHGQHDHQSLFKIAEHRRFLDAYAGLEEETAAFTALYTELSEKRAELEQLNISEKQLNEKIELLNFAVEEITKAKLKADEEQELEAEENKLLQYEKLYEHIEEADAVLTGERGAVSLLKKAINAFGAAAEIDGTLAENMQRLESAYYDLEDIASNVASYSASMSFDPARLEEVQERLSLIYKLKKKYGNTIAEVLEYCDKAQKELEQLVHNADSKTELESEIQKCTQRLFTSGKALSEKRAAAAKTLQTKVEAILAQLGMPKTKFEVQVQLKDKTGNKQTVGPYGFDSIEFLISPNPGEPLKSLAKIASGGELSRVMLALKTVLAAADEADTLVFDEIDTGIGGEVALAVSEHLKKLSEKKQILCITHLAIIAAHADTQIKIEKTSDGTSTRTSAFIIEGQKRTEEIARMLAGDEVSDVSQKHAQELLQKYGTA
>NZ_CP042813.1|WP_044634284.1|2121528_2122329_-|hypothetical-protein
MANEKNKFYTERLNSYQTEIEQLLVREKNILALISKDEFGKEYKKMMLVEEMLYLTTLYFAKYQLSIALIGGKNEDILNDARKTVYKAIIYLEEIVTNFIDVPFSDYKDKVEKIKKIGQRQRYYLIRKMGLVIDMIIDAYGNNTKWKWTFVELEARYATVAKNILDLKDSSATGLDPHSPDYDSTVFHLRLVKQFLAQAADRYREKYEMATFSIEDFRIAIQYLLALRRIHLILNEHEAAEEVKKKAEIWSDKMEKDHQKREARRK
>NZ_CP042813.1|WP_024752010.1|2120331_2121528_-|HD-domain-containing-protein
MFNKAIVLKLFEAFSIQRWNDLIRPFDMVEMDKTAEKMFLAYIIGKYEEKSGKVIDWNKIIDNAFFELLRKIALSDIKAPVQRIIRSEYPEEYQKLNLWVFKKYETLFSGTPLLDDFFAYLNEKSDYNDISLRVLRAAHKYSTIREFEMLKMVNEPFRLSKIAPVLEQDIEDFTDLRGMQLLITKRKPYALITEIEKLRFQIRWNQTPRVPETSVLGHSYFVAALTLLMSKTLGRSRHRTYNNFFGALFHDLPEAVTRDIISPVKQATEHLPDIVKDIEDKIVSEELVPLMDAFYRDEVLYYIQDEFENRILKGGKTCIVDYADLESKYAEPKYKAIDGALIRTADQIAAFVEADSSIEYGIKSDHLLEGRNKILQRYPKGTGVNGLAVDLFFNAYRN
>NZ_CP042813.1|WP_024752009.1|2118939_2119920_-|phosphatase-PAP2-family-protein
MEYFETVESAVHPVLLWGIEVIKTVQFIANPILTKITSILSFLGGEGIVLFALFFIWCIEYRKGLIIFLSLAISNGINSYLKNLFKVPRPFVVDPSVKLEFEKNFSTPSGHSQSSVVFWALLFFYHDESSEKTETKESPTHKKLKAVFMFLIPLYIGFTRVYLGVHYPTDVLFGWVIGAVLSVIALFLLPKILTAVTAFFASAKKISNRRLRGLELAVFALIAVLFVAFDSDPSMGGAVLGLAIGKIFLFDSYAAEFSAASGSVFQKILRYLVGLVLCVGGLLVLKQCFSFAPEEYTRLLRFLRYAIAAALVSGAAPILFLKLRLA
>NZ_CP042813.1|WP_002701542.1|2133641_2134103_+|hypothetical-protein
MAEKNTCIHVLHLIVIILVGIIMIGTVAGLIKASAKQNEIAEEVPPIILQKEDALYGEIGRLRISSADSPPISVIVTPFLQYAKADIALQEELIRKKEILKKVIISWFEKKNAVQLSTFPPDKIKKLLLEELNKQLVLGKIKGIYFEELTLLN
>NZ_CP042813.1|WP_002701539.1|2134152_2134521_+|hypothetical-protein
MTHEAVPAAQIIIAIIPIVGIVTGGSVIFFYLLWRHKQIICQIENNIYIRPSFNLVAFCLLAGIMLTITGFVLTILFAIINGISYVLLGGLIPLAIGISFLSFFYYTTHIDAEILWKGDERA
>NZ_CP042813.1|WP_148879026.1|2134513_2135173_+|RNA-polymerase-sigma-factor
MLKKKILSNNDPKKEQQTQKKIDKEICKAVLNGNTQAFSVLVEKYQQQIYRLGMSFFKNEDDSKDFVQDVMLKAYTALGSFRGDSAFSTWLISIAYNTAINSMRRSQRFVSFAESFEIEAPGETPEERHINNCVKLSIREAVENLCEKYRVCIDLYFFYDMPYADISSITGLPVNTIKSHVFRAKKILREYLTEEQVLFRSNENPSSGIFAIFQLRYDL
>NZ_CP042813.1|WP_148879027.1|2135348_2135633_+|hypothetical-protein
MQNIYQLSEKPVQTETLSDAKILLWMLTGLLIVIGFIILPFTEIGQWGINHLGIAFIIPFALICAISVSAFYAVFVGKNIDFFVKQFDLPTSLQ
>NZ_CP042813.1|WP_024752017.1|2135963_2136446_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNTIQTITVKSPIGVLRIEETGGVISSIGIHKENAPIVSCTSSSVLNHCVDELRAYFDGKLKRFTVPVIFLGTEFQQRVWKALQEIPYGQTQSYKELAELIGARKAYRAVGNAANKNPILIIVPCHRLIGSDGSLTGFACGIEAKRFLLEMEKDLQQALR
>NZ_CP042813.1|WP_002701529.1|2136442_2137636_-|DUF1343-domain-containing-protein
MKKLLCIFSLLCCTIFLFAEKIILGIERVYEHRHLFEGKRVGLITNQTGINAKGVSSIDILAEAVNLTALFSPEHGIRGDAREGAAIEDTIDAKTGLTVYSLYGKTKRPTEQMVQDIDILCFDIQDVGARFYTYIYTMAYAMEACAKFNKTFVVFDRPNPISGSAVEGTILDMEYRSFVGYYPIVQRHGMTVGELARLFNTEYKIQCTLHVIAMKNWDRNSYFNSLPLPWIPTSPNIPSAETALLYAGICVFEGTNISVGRGTTMPFQYIGAPFIDAPELADSLNRLNLSGLLFVPAYFTPSLSLHKNIPCKGVQIIVTDKAQCKPVYAGFVILYTIRELYQTDFKIINAPNKYCGLNLLTGTNKITENKLSLTELDALMQKDTKRFMRIRRRYLLY
>NZ_CP042813.1|WP_148879028.1|2137632_2139594_-|penicillin-binding-protein-PBP4B
MKKNVIFVLSILLTACASSPKIIVSPTTAPRFLSEQHEAEFQVDTVFPIDFSNYDDSILTNNFISFIGFSEQGKLYFTAKGIKNFNLYVNGYNINTKKICDQENTCIDISTITKNGKNILYIGNIQIVKKGDQKTETKPFLKLQIPYPEIIYKPTNIGTVDYRAFQLVDSIINAEVQNGFPGAQLVIVKDGKLLKSSSYGNISTVDIFGKPVKKPIPVTNSTLFDLASNTKIYAANFALQKLIYEQKISIHDRVVSFFPEFVDSKKAKFTGKKYITIHDLLTHQAGFPAGARYFAKISKPLTKTIRKKNSKGKIRYVTVVSDEVLSPRERTFRLIMETPLVYKPGTQVLYSDIDYLLLTFIIEKITKMPLDEYVTKNFYKPLNLNSICFEPLKHNFMLDEIAATAITGNTASSTDENKNLRRFFIHGTVHDEEAFHSMEQVSGHAGLFANAESLAVLAQVMLNRGGYGTIKLFDENTVSLFASQSYISPSYGLGWRRQGAQNYAWAFSPLADSNTVGHTGWTGTLTVIDPKKNLIIILLTNAKNTPYPDKKRSAVKTEGDYYLAKCYGAITTILYNAFENTDKDFFDFMLIELVEKKYAMLKAIKNFNNSGYIKDLRALMDTVKSSAKHSSKLRAFLKSPTGKAIEKKLESIK
>NZ_CP042813.1|WP_148879029.1|2139702_2141421_+|potassium-transporter
MKQKNGMLFLAASMSILLIILEEINSFSSVMYIAFGGNILILLLIGATILLPMKNEKYAKIFIQKKLLKLLTIILLIALFVLAKITSGIKTVNIYTLFNLIKNIFLLALVITAIRGQGKISKQAVTNPAQTLILSFLTVIIIGAYLLKLPISSSDHVGLSLLSSLFTATSAVCVTGSTVINVAEQLSGFGKLILILLIQIGGLGFMVLSFFGMLALRRKLSLQDKLIVSYMINEDDMSDLFKGLKVIIIATFTIEAISAFFLFFGFMQIEGFGIKALAYACFHAVSAFCNAGFSLYPNNMESFTGNYIIGLVIPCTIILGGISFVVISEMAMRSKRRIKNLFSAQKKALEPMSLNTYVVLKITAVVLIVSFSGFYLLEHEYAMKDYGLGTQYLASFFQAVTLRTAGFSSLPFGSFRQPTLFFMVFIMFLGGASGSTAGGIKLNTIAAIIASFKSFLKNEQHAKIRNMVLHIKQIEKAFLIFGFGLSVVCVGVFCLSITERFYFLPLLFETVSAFATVGLSTGITPELTVYGQLIIIVLMFIGRVGPLTILTAVSKPEPESNITYAYSSLAIG
>NZ_CP042813.1|WP_024752020.1|2142616_2143324_+|TrkA-family-potassium-uptake-protein
MSIKKNFVVIGLGAFGNKICEILTEGGGNVIAIDKNADTLDKVKNFVSAAILIDTTNEGDLLKAPLDDIDIAIVAIGDNIEASILTTTLLKQRGIPYIVARTISPLHATVLRRVGANEVLNIEVSSATSLARRLVAPDRTNSIAITEDVTIREIIAPKFFDDKTIDDLALRDKFNLKIIAAVRTEIDIDSAGNSIPKKKLYYPDNIFTFKSADRIFVLGKNHDIKELIFTSENLK
>NZ_CP042813.1|WP_039943365.1|2144118_2145411_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKIHPIAKELNEILEQTVAGKLLSNLGKRLFFPKGIIAQGAEVKLKAPNANATIGMMCKNKIPVELNALHDLLPAFSPSEIVAYTPTAGTETVRKLWYNNMLLKNPSLENKKISLPVLVPGLTAGLSFTLDLFLSSKDRLIVPQPAWDNYQLIAEARRNASTAAFPIFDGDNFNIKGFTSCVEREAKSGMLKILLNFPQNPSGYTPTEQEVDSMYSILFEQAEKGVAILIIFDDAYFGLEYESEAIKESLFVRFADAHKNILAVKIDGPTKEDYVWGLRTGFITFASKGFNDIHYETVIKKLLGAIRSSVSCSATPSQTFAVKILENEKTDSEIQNLHTLLNDRYKEVKRVLKKFSSSEKLKPLPFNSGYFMCMHCSGFNAETLRQKLLNEYQIGVVAVDDCHIRIAFSSLDIENIEPVYTAIFEAAENL

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Crispr_ID: NZ_CP042813_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_8

2152316-2152428

Orphan

Consensus_repeat	Method
CTGCGTGGAACCACCGCCGTCCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_8

>merge|NZ_CP042813|8|2152316-2152428|CRISPRCasFinder
CTGCGTGGAACCACCGCCGTCCATGGCAAAATTATACCGTGCGAGTTTTAAAGCTTTGTAAACTATTTTGCTTTAAAACGTCGTTTCTGCGTGGAACCACCGCCGTCCGTGGC

>NZ_CP042813|8|8|2152316-2152428|CRISPRCasFinder
CTGCGTGGAACCACCGCCGTCCATGGC	AAAATTATACCGTGCGAGTTTTAAAGCTTTGTAAACTATTTTGCTTTAAAACGTCGTTT
CTGCGTGGAACCACCGCCGTCCGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_039943365.1\|2144118_2145411_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181512
NZ_CP042813.1\|WP_024752029.1\|2160035_2161226_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP042813.1\|WP_148879031.1\|2152513_2153998_-\|transposase	unknown	unknown	gnl\|CDD\|227708
NZ_CP042813.1\|WP_024752034.1\|2171277_2172822_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP042813.1\|WP_024752027.1\|2154407_2157158_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP042813.1\|WP_148879032.1\|2164546_2168155_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP042813.1\|WP_148879028.1\|2137632_2139594_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NZ_CP042813.1\|WP_148878779.1\|2169336_2170359_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP042813.1\|WP_002695032.1\|2162704_2163904_-\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|168478
NZ_CP042813.1\|WP_148879029.1\|2139702_2141421_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|273349
NZ_CP042813.1\|WP_081718643.1\|2164211_2164466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752022.1\|2146430_2147276_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350624
NZ_CP042813.1\|WP_002701513.1\|2145475_2146468_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|285027
NZ_CP042813.1\|WP_024752030.1\|2161355_2162555_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NZ_CP042813.1\|WP_024752028.1\|2157606_2159382_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_024752020.1\|2142616_2143324_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP042813.1\|WP_039943366.1\|2147268_2147673_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP042813.1\|WP_002701506.1\|2147669_2147999_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP042813.1\|WP_024752024.1\|2148029_2150162_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP042813.1\|WP_148879030.1\|2150165_2151506_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_039943365.1\|2144118_2145411_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	7.42202e-161
NZ_CP042813.1\|WP_024752029.1\|2160035_2161226_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	6.91226e-76
NZ_CP042813.1\|WP_148879031.1\|2152513_2153998_-\|transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	3.46428e-14
NZ_CP042813.1\|WP_024752034.1\|2171277_2172822_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	2.72909e-120
NZ_CP042813.1\|WP_024752027.1\|2154407_2157158_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP042813.1\|WP_148879028.1\|2137632_2139594_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	8.10475e-133
NZ_CP042813.1\|WP_148878779.1\|2169336_2170359_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.38188e-27
NZ_CP042813.1\|WP_002695032.1\|2162704_2163904_-\|methionine-gamma-lyase	gnl\|CDD\|168478	PRK06234, PRK06234, methionine gamma-lyase; Provisional.	0
NZ_CP042813.1\|WP_148879029.1\|2139702_2141421_+\|potassium-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	6.04213e-93
NZ_CP042813.1\|WP_148879032.1\|2164546_2168155_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP042813.1\|WP_024752022.1\|2146430_2147276_-\|M15-family-metallopeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	1.17207e-64
NZ_CP042813.1\|WP_002701513.1\|2145475_2146468_+\|AAA-family-ATPase	gnl\|CDD\|285027	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	5.58739e-89
NZ_CP042813.1\|WP_024752030.1\|2161355_2162555_+\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NZ_CP042813.1\|WP_024752028.1\|2157606_2159382_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP042813.1\|WP_024752020.1\|2142616_2143324_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	6.28896e-40
NZ_CP042813.1\|WP_039943366.1\|2147268_2147673_-\|hypothetical-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	0.00150067
NZ_CP042813.1\|WP_002701506.1\|2147669_2147999_-\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	6.77129e-19
NZ_CP042813.1\|WP_024752024.1\|2148029_2150162_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	1.6973e-43
NZ_CP042813.1\|WP_148879030.1\|2150165_2151506_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	5.81662e-46

>NZ_CP042813.1|WP_148879030.1|2150165_2151506_-|SpoIIE-family-protein-phosphatase
MALLITNYESFSEFTLRDKFFLASFIFMIFALTASGISEYISSQIKKNVYLQTETALFNNFIERLRFCYRHEELVAAIQEELEYQADCAVLLANTKTEHVIYNSTSAFISDPETYDLMRRRFFTDWTWYWAEGLYFFDTNMQLVGDKRKARGLFIASGDIRFFLICRFIRNTEPEIFPILLHEFNDYLNREKTLGQLLYYSQLFQEWSMVANTQRSFLPKKLPDTTSIEVGAYFQPLVHVSGDYYDIIKIDEDKTLLVTGDVSGKGLAAALVMGIIMNTIQIIENKEDLAGIIYAIDTAIKRMKLQDKYTVLFLGLIDTKKMTIKYVNASMEKPFILTESRPTFKVKTLESNCSVVGIIDLDEVIVEERPLYHGDVILMLSDGIPETMDANGIELGETDYYLDSIKEFAHNPPAEMVKNIADMALSFSANNAMRDDVTIVAVKLKR
>NZ_CP042813.1|WP_024752024.1|2148029_2150162_-|SpoIIE-family-protein-phosphatase
MGLLFFAYFFAVIIILDSVYLKFNDRQSSVFLRRIAHTAGIAALLSAVSISFVMYNKVEAQAFMFKLAMVAFTLTSHSLLNMTFKVPYFEKNKTFSILNFLLHTFGIFLVFFAVGRFSWNSIVSFKFYSKKILPFLTGAELYVYIFLFAVPVVSFILLVVKAFKIKSNIYRQQLILIAFSVLAALISWIVIVRLFAFFPWVFSLFPIGILCVLFISQAAFSLTSVFDLKQILLSFARFIFFTLMFALTAGLAAAFIVQTSPTLRMLLLGGIITSFILFITRDFITKKFAFLLGDTSDYESKLTEELQQFDYTLGRDSILQSFVELMKTRIDCCGLGILITDENGVFKTVYSDFEKRLSIPTGKKCFAFLMNRNVSVITKTEIVANYIYENIKSEMLDVFTEMDAQTIILIREGQKLIGCIGLGAKNRGAEYNQYDIRVLRNIYSYFFLIIYYLSNIAKQDIILTVDREVEMSDQIIGSIQKNMDKIENKAITVGSVSYSAHQLGGDFIDFIKLTEDRFLFLIGDVAGKGLAASMSMVILKSVIHTFLQETGDFKKLIIKINSFVKDNLPRGTFFAGLFGIIDFPTNTVYYLNCGIPLMAMYIQTYQNVIEVQGEGRVLGFVKNIAPFLKVRKITLHPKDVVVFTTDGVLEAQNLRGDRFGNDRVNRILQANKDKNTEEIAKDIYSGLLDFISNEIQDDVTILVMKNNEKP
>NZ_CP042813.1|WP_002701506.1|2147669_2147999_-|STAS-domain-containing-protein
MESVQITEKITPDYILLSVVGSINSYTYQEFESKIYSSIKENNIVLELSNVTNMSSSGLGVLMSAHDEGEEHGHKLYILAPSEIVRLAIDSTGFSEMFTIIHSVSDLSQ
>NZ_CP042813.1|WP_039943366.1|2147268_2147673_-|hypothetical-protein
MSRVCRLTVTPDTKHLAQLEALIETSPAIPDNKRMNILIIVTEMFDNIAEHALIPDGQSVTMEIKISKQNTIVTFIYKTKNFEELLEGVHTGRPHFDKNAKRYRGLGLIMSKNLSQKVKYKKSIFNTARLIFYV
>NZ_CP042813.1|WP_024752022.1|2146430_2147276_-|M15-family-metallopeptidase
MYKKRIGLCFLICIFFAGYSKAHSDDSFQKEKNTMIPLTVSPAEKIFVAPSSIPKKIIENIIQNQKEFIFELSEVLAEEKEYLLILVDKQHPLPDGYTPKNLVALTNTRAYAINRSDLSLTKTAEEALHIMARAARKDGVTLLVSSSYRSYLYQVNLFARYVRESGEKAAERFSARPGTSQHQLGTVVDFGSITNEFANTRAGKWMEAHAGNYGWSLSFPKDYETVTGYVWESWHFRYIGIKACRLQKKWFNDIQQYMLEFIDAWKRQVVTAEEQPKAISE
>NZ_CP042813.1|WP_002701513.1|2145475_2146468_+|AAA-family-ATPase
MEMQKPVEIIQRFKQEMKKTIIGQDALIEGILTAYIAKGHVLLEGVPGLAKTLIVKTFASIVGLDFKRIQFTPDLLPADLIGTLIFNQAQADFSVKKGPIFANIILADEINRAPAKVQSALLEAMAEGQVTIGEKTYILPEPFFVLATQNPIEQEGTYPLPEAELDRFFAKLFVPYPSFEEEKKIITGFSDIVTNAESERQDTIKILSKEELGVLQTAAHAIHCDETLVEYIASIVAATRPITEKSDTVTKGSYLSYISFGASPRAGIALYKAAKIKALFSERDYVTPQDIKDCAPAILRHRLKLSYEAIADNLSADDIILKLLSVVPQP
>NZ_CP042813.1|WP_039943365.1|2144118_2145411_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKIHPIAKELNEILEQTVAGKLLSNLGKRLFFPKGIIAQGAEVKLKAPNANATIGMMCKNKIPVELNALHDLLPAFSPSEIVAYTPTAGTETVRKLWYNNMLLKNPSLENKKISLPVLVPGLTAGLSFTLDLFLSSKDRLIVPQPAWDNYQLIAEARRNASTAAFPIFDGDNFNIKGFTSCVEREAKSGMLKILLNFPQNPSGYTPTEQEVDSMYSILFEQAEKGVAILIIFDDAYFGLEYESEAIKESLFVRFADAHKNILAVKIDGPTKEDYVWGLRTGFITFASKGFNDIHYETVIKKLLGAIRSSVSCSATPSQTFAVKILENEKTDSEIQNLHTLLNDRYKEVKRVLKKFSSSEKLKPLPFNSGYFMCMHCSGFNAETLRQKLLNEYQIGVVAVDDCHIRIAFSSLDIENIEPVYTAIFEAAENL
>NZ_CP042813.1|WP_024752020.1|2142616_2143324_+|TrkA-family-potassium-uptake-protein
MSIKKNFVVIGLGAFGNKICEILTEGGGNVIAIDKNADTLDKVKNFVSAAILIDTTNEGDLLKAPLDDIDIAIVAIGDNIEASILTTTLLKQRGIPYIVARTISPLHATVLRRVGANEVLNIEVSSATSLARRLVAPDRTNSIAITEDVTIREIIAPKFFDDKTIDDLALRDKFNLKIIAAVRTEIDIDSAGNSIPKKKLYYPDNIFTFKSADRIFVLGKNHDIKELIFTSENLK
>NZ_CP042813.1|WP_148879029.1|2139702_2141421_+|potassium-transporter
MKQKNGMLFLAASMSILLIILEEINSFSSVMYIAFGGNILILLLIGATILLPMKNEKYAKIFIQKKLLKLLTIILLIALFVLAKITSGIKTVNIYTLFNLIKNIFLLALVITAIRGQGKISKQAVTNPAQTLILSFLTVIIIGAYLLKLPISSSDHVGLSLLSSLFTATSAVCVTGSTVINVAEQLSGFGKLILILLIQIGGLGFMVLSFFGMLALRRKLSLQDKLIVSYMINEDDMSDLFKGLKVIIIATFTIEAISAFFLFFGFMQIEGFGIKALAYACFHAVSAFCNAGFSLYPNNMESFTGNYIIGLVIPCTIILGGISFVVISEMAMRSKRRIKNLFSAQKKALEPMSLNTYVVLKITAVVLIVSFSGFYLLEHEYAMKDYGLGTQYLASFFQAVTLRTAGFSSLPFGSFRQPTLFFMVFIMFLGGASGSTAGGIKLNTIAAIIASFKSFLKNEQHAKIRNMVLHIKQIEKAFLIFGFGLSVVCVGVFCLSITERFYFLPLLFETVSAFATVGLSTGITPELTVYGQLIIIVLMFIGRVGPLTILTAVSKPEPESNITYAYSSLAIG
>NZ_CP042813.1|WP_148879028.1|2137632_2139594_-|penicillin-binding-protein-PBP4B
MKKNVIFVLSILLTACASSPKIIVSPTTAPRFLSEQHEAEFQVDTVFPIDFSNYDDSILTNNFISFIGFSEQGKLYFTAKGIKNFNLYVNGYNINTKKICDQENTCIDISTITKNGKNILYIGNIQIVKKGDQKTETKPFLKLQIPYPEIIYKPTNIGTVDYRAFQLVDSIINAEVQNGFPGAQLVIVKDGKLLKSSSYGNISTVDIFGKPVKKPIPVTNSTLFDLASNTKIYAANFALQKLIYEQKISIHDRVVSFFPEFVDSKKAKFTGKKYITIHDLLTHQAGFPAGARYFAKISKPLTKTIRKKNSKGKIRYVTVVSDEVLSPRERTFRLIMETPLVYKPGTQVLYSDIDYLLLTFIIEKITKMPLDEYVTKNFYKPLNLNSICFEPLKHNFMLDEIAATAITGNTASSTDENKNLRRFFIHGTVHDEEAFHSMEQVSGHAGLFANAESLAVLAQVMLNRGGYGTIKLFDENTVSLFASQSYISPSYGLGWRRQGAQNYAWAFSPLADSNTVGHTGWTGTLTVIDPKKNLIIILLTNAKNTPYPDKKRSAVKTEGDYYLAKCYGAITTILYNAFENTDKDFFDFMLIELVEKKYAMLKAIKNFNNSGYIKDLRALMDTVKSSAKHSSKLRAFLKSPTGKAIEKKLESIK
>NZ_CP042813.1|WP_148879031.1|2152513_2153998_-|transposase
MSIPKSIKQFRPTQFGAVEIRFIGNYYYVYQVSSKWDGAKGRAQKVTGKSIGKITEADGFIPNANGLRLMQQMRSTADVAPTVKNYGAYELLQQLALELNDKLKQHFPDIFREIRTIALLRLVGSICSAKMIQPLFLDSYMSTLCTDIAVSEASVRKFITLLGSLQEQADAFMRDQVMPANALLFDGTSIFTRSADSLAAKGYNPQHSRGTQARILYVFEKNSHKPVFYRVLQGSIVDKVAFMETVHAAGCKDCIIIADKGFYSKENLAALMNAGLQFILPLRKDTVNVEPAFYENTDDSKWDGVFTYNKRPIWFRKKPSGTKGNFIYTYRDDSRKAELVGQYVEKVEKFYGERTHEPKDVLKKIRMGYFSFCSNLDVSARDIYMNYKERWDIEQCFDYLKNSVSQSASHAHTDEYFRGWAFVNHISLLYYYGLLNALRNTKLDEQYSASDVLKLTKNIYLVDSGDNQGFKLSAIQKRTQRILDTLGIELLCNN
>NZ_CP042813.1|WP_024752027.1|2154407_2157158_-|preprotein-translocase-subunit-SecA
MLADTIIKFFFGSQHERDLKALLPILHKINAKEAWALRLSEADFKQKTADFKERFQKGESLDDFVPEAFAMAREAARRILGERPYDVQMLGSLVLHSGRIVEMKTGEGKTLMSVAAAYLNSLSGKGVHVVTVNDYLAERDTEWMRPVYEYLGVSVGTILSNMDNDARKIAYNCDITYGTNNEFGFDYLRDNMQLSLDEKTQRGFSFAIVDEIDSILIDEARTPLIISGSAEDDTQRYFEVDKLINQLTEVQKNPETGEYPNEVEGEEVIGDYIIDEKSKRVSFSGPGMLHIQDILLNQGLIQGSLFDEENFEYIHYFTQSVRAHILYHIDVDYVVKDGQVQIVDEFTGRILEGRRYSDGLHQAIEAKEHIRIAQRNRTMATVTFQNFFRMYDKLSGMTGTADTEAVEFNKIYKLDVVVIPTNLPVARKDEHDVIYMNEDEKWAALCDEIADAYKRGQPVLVGTVSIEKSEKLSALLTRKGVRHEVLNAKNHAREALIIAEAGAKGSITIATNMAGRGTDIKLGGNPEFRAKKRAGTEATHEEYLRAYEDEYKKWQDEYEKVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGRSKFFLSLDDDLMRLFGGESLKRFMGKVGMEPGEPIEHPWLNKSIEKAQTKVESRNFDIRKHLLEYDDVLNEQRSFIYEQRDSILADSNLSERIYVTILEYLDEGFADLKGGSKKEKEEVITAFQAELKRLFNYTLDAEDIPLLDSKEAESVKTKIFEAIKANIEEKIALAGAENINMFLRYQYLQAIDKKWLDHLENLESLREAVYLRSYGQKNPLTEYKLEGFDIFYSMLDEIRLSIASRMALVTVRTDDDSSAGRQVRRRQGTAQHNSMEAFHSHGASPMGASSQPDKVQVVRTMPKVGRNDPCPCGSGKKYKHCCGR
>NZ_CP042813.1|WP_024752028.1|2157606_2159382_-|ABC-transporter-ATP-binding-protein
MKDYTDKIKTSVLIKRFLPYFRKYYGVLALDLTCAFFTTLCEIVFPLMVRNITNKAIWDISTLTMDFVIKICIIYFLLRLVDTAANYYMASVGHIMGAKIEKDMRRDLFAHLQKLSFSYFDNTKIGQIMGRITSDLFEIAEFAHHCPEEFFIAGVKILISFIILCQANILLTVIVFSVIPLMIISTVYFRRRMRLAFKRSREQIGDLNARVEDSLLGVRVVRSFANEETEEQKFERGNNGLLNIKRYQYRYMAGFKAVTQFFDGLMYVTVLLCTAYFLIKGKITAGDMIAYMLYVSMLLASIKRIVEFAEQFQRGMTGVERFIEIMDAKVEITDREGATEIKDAKGDILFDKVSFQYPEHDKVVLSNIDLHVRPEQKIALVGPSGGGKTTLCNLIPRFYEVSKGRILLDGKDIRDITQESLRSQIGVVQQDVYLFSGTVSENIEYGKIGASREEIIEAAKKAGAHDFIMELEDGYDTCVGERGVKLSGGQKQRISIARVFLKNPPILILDEATSALDNENERIVQKSLETLAKGRTTFTIAHRLTTIRNADTILVLTENGIEESGSHETLMKKKGRYYSLYQLYGQGYFEE
>NZ_CP042813.1|WP_024752029.1|2160035_2161226_+|dicarboxylate/amino-acid:cation-symporter
MKKFGLLPRLILAIVLGIVIGFVAPLPVVRTLATFNGLFGNFLSFVIPLIIVGFVAPGIADLGSGAGKSLAITAGLAYGSTITFGTLAYIAGSIFLPIFTRGGSMHVFEQTDAVTPFFNSPMPPIFGVTTALILSFILGVGIASLGEKRDALKNMVHEFADIVTKLIKIIVIPLLPVHICGIFATMAHEGTVARVMSVFAKVFILIIIMHWLTIFIQYTLASLIGGGNPFSKIRVLIPAYLTAIGTQSSAATIPVTLAQTIKMGVNKGVAEFVIPLCATIHLSGSTITLLTCSMTIMFLNGMDTSFTAIFPFILMMGVTMVAAPGVPGGAVMAAIGIMESMLGFDKSMIALMIALYLAQDSFGTACNISGDGAIACIVNKINGYKLTPGQKTELVK
>NZ_CP042813.1|WP_024752030.1|2161355_2162555_+|threonine-ammonia-lyase
MINLQMIHEARQKVSEIINATPIFTASRLGDNIYIKMENLQKTGSFKIRGAYNKISNLTDEEKKKEVIACSAGNHAQGVALSATKQGIKSYICVPSVTPLSKIDATKGYGGEVIVVEGSFDDAMKRALELKEEHNYTFIHPFDDEYVIAGQGTIGLEILEQLEDIENIIVPIGGGGLISGIALAVKETNPKVKIIGVEPENAASMRDSIKANKRMLLDSVNTIAEGVAVKIPGEQTFALVKKYVDEIVTVSESEISNSILRLLEEGKTTAEGAGACSIAAAISDKYSFKGKTVCVLSGGNINVNMISKIIKTGLFGSGRLTEVVTTLVDKPGELVKILEIVKKCGANVLNINQYSESSHMQLNTMVVRIVLETFNETHQRAVWQALRDAGYEHFREAIY
>NZ_CP042813.1|WP_002695032.1|2162704_2163904_-|methionine-gamma-lyase
MDKDELKNMGFASKQIHAGYTKNTYGALATPIYQTSTFVFDSAEQGGRRFALEEAGYIYTRLGNPTTSAVEEKLACLENGEACVATSSGIGAISSSLWTLVSAGDHIVAGKTLYGCTFSLLSRGLTRFGVDVTFIDTRDPENLRKAMKPNTKVVYLESPANPNMYLCDIQALSAIAHQNSDCKVIVDNTYMTPYLQRPLNLGADIVVHSATKYLNGHGDVIAGFAVGKKDVIDQIRFLGIKDMTGSVLGPFEAYLIGRGMKTLDIRMEKHCANAQKVAEFLETHPTVESIAYPGLPSFPQYELAKRQMALPGAMIAFTVKNGLEAGRKLMNSVKFATLAVSLGDAETLIQHPASMTHSPYTAEERAASDIAEGLIRISVGLEDAKDIIDDLRQALNTLI
>NZ_CP042813.1|WP_081718643.1|2164211_2164466_+|hypothetical-protein
MVPNRSDVLKQSNLQSFKTRRFGFDKDGKNPEPPRTAVVLNRIEFENYHSYINRSFQTHRFHFATDGKMKPLCRALFYTIFYHS
>NZ_CP042813.1|WP_148879032.1|2164546_2168155_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MQKKTQTMTGNNAASYVAYAFTDVAAIYPITPSSDMAELIDSWSANGKKNIFGQTVLVSELESEAGAAGAMHGALSAGALAASFTASQGLLLMIPNMYKMSGELLPGVLHVSARALSSHALSIFGDHQDVMACRQTGFGMLASGSVQEIIDLGGIAHLAAIKGRVPFMHFFDGFRTSHELQNVELIDYEDFAKMIDWKALNDWRTTAMNPEHPFTKGTAQNPDIYFQAAEASNRFYIDAVEIVADYMKQISSLTGRTYKPFDYHGAADAERVIVAMGSITETAEETVDYLVSQGEKVGLIKVRLYRPFSPQYLFEVMPKTVKKIAVLDRTKEKGALYEPLHLDILGAYIDVPNKPIIVGGRYGLASKDTTPTMVKSVFDNLKSDTPKNNFSVGIEDDITHLNLPMPEEIKTEPTGNIRCKFWGFGSDGTVGANKSAIKIIGDSTGMYAQAYFAYDSKKSGGVTVSHLRFGKKPIKSAYLISDADFISCSKQSYVHQYDLLKGLKKGGTFLLNCLWSDAELENTIPAAMKKFIAKNDIKFYTINATEIAQKIGLGHRINMIMQSAFFKLAEIIPIEQAVESLKSSILSTYGKKGDDIVKMNYTAVDMGIESPHQVTVPKSWADAEDKSIDNAHLPPYIRNILVPINRLEGDRLKVSAFKGVEDGRMPNCTSRFEKRGIAVEVPHWIKENCIQCNQCSFVCPHAVIRPFLLNEKENSAKPQVFETIKANGKGLEDMTYRMQVSVLDCTGCSNCANICPAKNKALVMKPLAEEEAQAANWDFAVDEVSNKHGVMDQFSVKGSQFKQPLLEFHGACAGCGETAYATLVTQLFGDRMMIANASGCSSIWGGSYPTAGFSYNEKGKGPTWASSLFEDNANYGYGMALGTRKLREQAEDYMKKFLELNVGTDFTPLFKEWIENKKNLAANVITCDKIKALFDKHQKPVNQIIKNTPEADYLPKPESHVFKYDTGNIEADRLLEYIYKLKDFLVKKSVWSFGGDGWAYDIGYGGLDHTMASGEDFNILVFDTEVYSNTGGQSSKSTPTAAVAKFAAGGKRMRKKDLGAMLMTYGYVYVAQVSLGANMNQLVKALKEAESYDGPSIVLCYAPCVNHGLRSGMGRSVEQEKKAVEAGYWHLYRFDPRLKKEGKNPFQLDSKEPTASFQDFINSEVRYTSLKKTFPDVADELFLKAEEDAKDRYDRYKKMAQN
>NZ_CP042813.1|WP_148878779.1|2169336_2170359_-|IS5-family-transposase
MKQKGLFDEEDRLRVLSKLGDSLEKLNEKINWEIFKPLLKKALTKEPKGLGGRPAYDYVMMFKIIILQKLYNISDDQTEYQINDRLSFMRFLGLELKDKVPDAKTIWLFKEKLIEARVSKKLFEKFGKELAKNNLIGKEGTIIDATIVEAPIQHNSKDENEQIKNGKIPEQWQEKQNKAKLSQKDCDARWTKKHKRNYYGYKDHIKIDKKSKLILKATVTAANVHDSRELKNLVERKDERLYADSAYIGEEIEGILKAKGIEGQICERGARGKPLTKKQKIGNRKKSKIRARVEHVFGFMTNSMKGIYVRTIGLARATFSIIMMNLTYNLCRYCYLDIAI
>NZ_CP042813.1|WP_024752034.1|2171277_2172822_+|BCCT-family-transporter
MAENQKKEIRWAVFIPALAFVLIAAITGIVSNETLTSVSNSFFAWSLESFGWLYQITLIAVLIITCVIMFSKLGSVRIGGKDAKPKYSFGTWFAMTLTGGVATGIVTWGVNEPIIYLGNIWGELDAVGITPGTPEAARFAMGRCFYNWTFIPYAIYALAGVVVAYVYFNKKQQLNVTSTLEPLFGEKIKKGIIANIIDTLSMLAIAIGLCTALTMCITLITTGLNASYGVTNNLKLFVIVGVLIVAMFTLSSYVGLDNGLKKLAGINAYFYYGLLLLLLVTGPTLYIVRNTTAGMAVWLDKFWLWGLDPIDIGGAPLTRSWTLFDFAFWVAYAPVTGIFLGQISYGRTIRECLIVNLVLPSVFGIIWFGVWGSTAMNMQLTGQLDLVAIIQNSNAVMGLFEFIKNMPLAVILVPVNLFVILISFVTAADATANNVASMCIKNIPIGSEAPRYLKALWGIIIGIIAIVMAAFGGGEQGVAGVKSLAAAGGFIVLFIFILQVISAVKMFFVDKIVE

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Crispr_ID: NZ_CP042813_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_9

2271816-2271967

Orphan

Consensus_repeat	Method
AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_9

>merge|NZ_CP042813|9|2271816-2271967|CRISPRCasFinder
AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGCTCAATTCTAAACGATGTTTAAAAGCATCAACACTGTTTTATAAAATTGAAGCTTTTAAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC

>NZ_CP042813|9|9|2271816-2271967|CRISPRCasFinder
AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC	TCAATTCTAAACGATGTTTAAAAGCATCAACACTGTTTTATAAAATTGAAGCTTTT
AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024751704.1\|2266892_2267282_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879060.1\|2277750_2278926_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP042813.1\|WP_148879054.1\|2266223_2266628_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024751707.1\|2265458_2265824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024751702.1\|2267654_2268131_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224863
NZ_CP042813.1\|WP_148879056.1\|2269121_2271728_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP042813.1\|WP_148879053.1\|2265783_2266221_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_044634573.1\|2272019_2273216_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879059.1\|2275833_2277747_-\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
NZ_CP042813.1\|WP_148883948.1\|2263754_2264840_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|366631
NZ_CP042813.1\|WP_148879057.1\|2273217_2274786_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376217
NZ_CP042813.1\|WP_024751703.1\|2267298_2267676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879055.1\|2268168_2269050_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_044634575.1\|2278953_2280630_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879058.1\|2274795_2275809_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP042813.1\|WP_148879061.1\|2280633_2281455_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879062.1\|2281461_2282931_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024751745.1\|2282927_2284754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879052.1\|2264847_2265384_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366631
NZ_CP042813.1\|WP_024751723.1\|2284774_2285581_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_148879057.1\|2273217_2274786_-\|hypothetical-protein	gnl\|CDD\|376217	pfam18798, LPD3, Large polyvalent protein-associated domain 3. This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.	1.84541e-11
NZ_CP042813.1\|WP_148879060.1\|2277750_2278926_-\|hypothetical-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	4.09507e-16
NZ_CP042813.1\|WP_148879052.1\|2264847_2265384_+\|hypothetical-protein	gnl\|CDD\|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	4.51956e-07
NZ_CP042813.1\|WP_024751702.1\|2267654_2268131_+\|hypothetical-protein	gnl\|CDD\|224863	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion].	1.93422e-05
NZ_CP042813.1\|WP_148879056.1\|2269121_2271728_-\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	0.000302696
NZ_CP042813.1\|WP_148879058.1\|2274795_2275809_-\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.11556e-36
NZ_CP042813.1\|WP_148879059.1\|2275833_2277747_-\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	9.14971e-10
NZ_CP042813.1\|WP_148883948.1\|2263754_2264840_+\|restriction-endonuclease	gnl\|CDD\|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	3.29261e-08

>NZ_CP042813.1|WP_148879056.1|2269121_2271728_-|hypothetical-protein
MAFKGRKVPTTVKVNPYEIAKASDMEFGFRSILDNFSVLLNAIGATHTPLVDEAGFNNSNELKYVGKKEKDFIIGGGLVDAGNKQLRLLPILAFNNKIGLLISDGLDKDNKPIEIEIGSGSGSFILTHKEDYLYRIESVYIGNANTGEETSGTTANIKKSDPIWDEFQTEWRGSYRVGENDTMQVSTFNKRQSQAVRLFVDFGALVPRAADASANIPDERSIWSERVKIAEVLVCFKRNETNWIYEMQPITKDDVRFVTARCYFDWRVQEEVIEKAKAADSVWVQHAKVAKPNQNAQNQKAEEKRIAGINLDNKAWRAEHYNYRWTAEHTRTYRLGSIAEINEQLYKMHKSDGDIKERVIRLDHINLRPEDPNALRAEKIPIDLVGNADIPLPYNKEIKSYDDVKKGLRAIAETLRGDLIPVGPDDGSGNSDISLPHNKKIESKENIKKGLRVIAETLIAADEKTNTVNTTLNKKIDTVNTTLNKEIDTVNTTLNSKINGVGEVLTKHIKATDVHSATSDPTAYRIAMRDGNGRMQVASTDKNSGESIVNVNFLTREWSPDFIMRVLMSKLITNQEEFNTWLSQTNNKAYTYVYLKGTFNRSGTINLALIGTQEVIGLGATIKVGIASRSDSSYFGVGIDGDDTSRIVRNIYLEVTGTINNGTVLGFEQCTCINCTAYVTGENGIDGGDGERGGNGSPGTAGTSAMGYYECIVDRCSAIVYGGDGGRGYGGGHHTFFKGIIPSRLSGDNGGAGYDGGYVYSCYNCTMKSPLVHEYAQAGNGGDGGKGGEGYYDNAGCLGKSGDGGNGGRGGNAHVFNSANGKGGSGGSGGPRGDVFPPKHTAKSYAATKKRKATVEGSAGINGRVVVM
>NZ_CP042813.1|WP_148879055.1|2268168_2269050_-|hypothetical-protein
MKRKIIFLIGLLAFGALIISCDPNGTKKTEKERVEKEKEQQQQQKKEQQEKQDLLDMLIVTGGSKNAMLDGEYFTPEGERIRFSSPDSTNIACFSNEIAEYTVDGNTITFDFSRQIKAYENINVENYLKALQLLAQNTIEFCEKELNKEGLTDKRKKEMQKALNDAKQKKEYFSSLDGAVKHERAQEKESLDYFKKRLEKETNETEKQALQKQIDEITAKLAQTDEQLKADISKRMEEVFQWKNRLAAALKTVNPVTGTLSADKQTITIKKMVTDVKEDGTPVYVENAVFTKK
>NZ_CP042813.1|WP_024751702.1|2267654_2268131_+|hypothetical-protein
MDQSSSIKSSFQLIDYKIDQINFSLTPETQFLAEDHGNKLFDIEFMFRDPQKFIDNEETYYVNGIQMLLKVLVNEEVMANGTFSISGLFKTTGEFSQDIEQRLVKEQIPAILFPYLRAAVTNILASAGFGSAILPLVNIQKMAGSLNLEIIEKKHDNK
>NZ_CP042813.1|WP_024751703.1|2267298_2267676_+|hypothetical-protein
MSNNKKIIYDIREQLAKEFNIMVELRRLNKYNEYEITIFDKNRYHSKEFASFVFELKKKLWDNNIYGVYFTLSIPQKSIPQKLIVQENLDTCIQHKYKTHEYKTNIPIKQDTYKKGENEWISLAA
>NZ_CP042813.1|WP_024751704.1|2266892_2267282_+|hypothetical-protein
MSFQQKINENERIAQECKKLKAFNVGASRAYYCAFLKAKDYLIANGISKQKYKQMVKNKKERAYSHGSIQKVLYTVKSTKNNKIDWSTLFLCWDNLYKQRIVADYDEQLITEDNFDKILSDLQFVLAIF
>NZ_CP042813.1|WP_148879054.1|2266223_2266628_-|hypothetical-protein
MLIFGTLKGYSDGIEEARHWALYVKKEKEISVLSAEIESNDFLDLCNCVEHRKLYDKVLKIARALHSASKYKDEDFNDWHVFIRIKENNSIDFIRAFVNAAKDTGHIVRRPQIQICVINKSCIKNMQLVCEERS
>NZ_CP042813.1|WP_148879053.1|2265783_2266221_-|hypothetical-protein
MDAGTKYLKQLRQTFSDMTVEEYEKLYKETMVQTDSLPRILTEGVPLIDEYLKEKEHKALGIVYMYMYQDIKKERINMSEPTLKINEILSSIKENTGRKKTKPSIFQKPVALVKKSMTSLPNDFYKTMKDVYNENTEYLFNTSRI
>NZ_CP042813.1|WP_024751707.1|2265458_2265824_-|hypothetical-protein
MKILNIFLIQAGFSSYGLPKKDLSITKEVATEMKDKEHDKALAVQSIVFTITEDEETLAEMALKYMVIFCDFENESNKELEDSIFKEMQQVYIDKANEFLVPAHLPALYRPHLQDMINSED
>NZ_CP042813.1|WP_148879052.1|2264847_2265384_+|hypothetical-protein
MQYKEKMIPLEQKTWSEFSISQLFNVYTGRDIIISKLEKGIYPVVSHTIENNGINFFTKNLENRRLFKHDNTISLADRGNFHSFVQPHNFYIGTRVKALEYTADNLNKDVLMFISQMINKQKVRFSYGFNATDKVENLKIMLPVTIEGKPDYDYMKKYIPIQEIKEIYKALQYLHTSY
>NZ_CP042813.1|WP_148883948.1|2263754_2264840_+|restriction-endonuclease
MVIIVNKRLSLNDVEWGEFNFTEIFSDIFIAKSSDSNKLQKGKVPFIGRSSINNGYQGDYDVEKEKVVKGNSITVSMVGEPKAFYQHYDFTCSQNILILQNDESLNRYNATFLCSIIDQYLIKKGYGYGYPVGLKRVIRNSLLLPSDENLKPNWQFMEDYIKQEQKIIAHKVIDYYEQKMLETAFDLVGLEDVEWKNFKLGSLFTFERKPSKGLNHLDTDKNRGISYLGATNKNNGVLEFVDPISNLVYRGNCIAFIRNGEGSMGYSVYKKENFMATQDISVGYNENLNQYNGMFITTVADRVRGKYNFGYKRNQSRLENEILTLPADKNGNPHWEYMSKFMQKLEVEKISNFLPYIYIYI
>NZ_CP042813.1|WP_044634573.1|2272019_2273216_-|hypothetical-protein
MKKNPIGKRLKEYTASAINTGGEVYEKIMASGKEHAEEQGAIENALCQLFDFIDYYRQPEIFNHQGTHLLKGLNFFSGLKKSRQEPYSSTKHKYKAMMIRVDDDAPLDTVWGTKWNAEHALRYYFNNDDCFVMEFTNEQEKNLLKNQFISDGWQVDGLPVEKSPHLNDQASLVNVNGIRMINNTVLQTAQAVRIAKGIYSLHFFIRGAMRNSKGVWQGKLNLKIVRKDGAAIFTKTYRCGMHWENIQEHLYFEQDGEYDCIFTCEKNVDIDFINLFPEVPYPSLSILIGHGGMRDLFSIFFAPHVADPKDKDDEKNFKDNEFIVFDLLDKYKFWFPFADDSESKRERLRLKIDFNDKHWGYWTEDIRWLDLLYVSALLDSLLPVGVKVFTIISSRRGS
>NZ_CP042813.1|WP_148879057.1|2273217_2274786_-|hypothetical-protein
MRIVIDADVSKQIIHTLKRLSEQQQFHEVLKLMQKTFVEGKHPRDEEGRFASKGGYVRAKRLKLKEKLKDYVGKDIKNEKTGIPAYISNESINKISSEKAIEKTKANGFTVDDHFYAASNIVPLFKKADLRGVYKDKNNSKDIVSIKRFNCRFRLPSGVAANAYITVKEARISGHKIYSLEVMELEKALKNEGLGMAVRKSNATCIPENTPPRTFSIPDSQKKARERETHQTDEQQQFHEILERMQKTFNEAEHPRDEAGRFTDKGPVSKEVHKTRQRLRAVFTDKAVPMPDIPFTRENYNKLFPRNRIDTPLGSVKLGEHQFEKLQALGRNYLLGAVATTLKNPVAIIREERDGRKSNLYVKSFIKDKKNKIVQSVVIDIDGQHISISTHEKDVSNVLNKIETVGQLIYIDSQPDRMAEQHHLSDESVVNPTRKQEKALKSCTTSIPHSQKKARAQNAALPKDFVSRCNMVSIQLMLLKWDIAAIQEETDRRNNMYDLLLKSFNGIVQELKKTQGSKQRRL
>NZ_CP042813.1|WP_148879058.1|2274795_2275809_-|hypothetical-protein
MITINGTEITELKYNGVEIEKAICNGVVVFEKTRENIIRMKTSADSIKLRVTTKDGSPCELWNDGKKIAEMQSGTHQTVSIPNNAEEILIKGKDIQGLDCSNNRLTALNVSGCTSLQVLYCSYNQLTALDIRGLTSLQHLYCYNNQLTTLNVSSCTSLQRLECYNNQLTAFDVSGCTRLQRLHCDRNQITSLNISGCTSLQHLYCYYNQLTTLNVSGLTSLEVLECYRNRLTTLNASGCTSLKRLVCFNNQLTSLAVSDLTSLQWLDCSNNKLSAEVFKKLFEDLPERKEKDGRVLLYKDGDSNYKDFPQPPELAAAFKAAKEKGWKFYKNNWSTEI
>NZ_CP042813.1|WP_148879059.1|2275833_2277747_-|cell-envelope-integrity-protein-TolA
MTIQDFFSTVKTNPFEIVKASDMDVGFQSIVDNASFLARLAVQAEHDFIIGGQVTPIKDSLSVRVSPFIAFNKKTQRLLCKGTETIVELKAAHATKNRRDVLFITEKGWVDFKKENRARWFVARGNAGQTGQENSGFAKVEPLNKRQAFKVALAVISGENNSGTAKYCDEECVKLGEISVKASQTKFGKEDIFAVSALAENEENAGWTNETMRTFSLAPMSKAAMRFFKIHKPDGTLKDGVVGKSNLALSGGDMLTGDDIVIGKKIAVKAGSINPATGAFEYTIPFVGTERLEFTIFESAKIKEVFDVVFNAFAYVWKTFIANDAAVYRYAQGYTDLGIADLNKVFFEALQKEIQERIAAIDKEAKERKEADAAIKTFAEEAIAQEAQERKEADEKETKERKEADEKETKERKEADAEIKTFAEKAIAQEAKERKEADEALKTFAEEAITQEAQERKEADEIEATARIAGDKQIKELAEEAISLSVPEGSTLGIYDDEEHKTFLKLDGKSFEPAEYPRFYEYWKEHLAFLGEDNEKKPFLPYVETADYSRLGEVVSFIGTDYHHEFLLCDGGPFSPDVYAEFYEQYWKKHLSHLGKDSIGWPLRPKLEGSIAGSNVYIKALPHVEHEFITPVIKTGK
>NZ_CP042813.1|WP_148879060.1|2277750_2278926_-|hypothetical-protein
MDFDYKIKTFDEIYTEMQLKVFGKILTATDANSGSVLCSLLEATARLIAEAYLHCQIGYAKYLQDLVEGAFGVKRLLGTKAKGKVVFFTEKGKPAASHLYIAVGTEIACGDTVFVTTESGMIDKGTEQSNPIFAEAKEIGEKGNVPSESVDTILSGLHSSIAGVKNIRPFENGTSAETDPELRKRFVNYLRGLQRTNFYGVKEAALSTKAYHVNVVLCAPPKDIPTRDFDGNPVTEHNVNCAVYVCDKEGECSGALLDEVRKTLRGDGTYNNPGYTPAGVHLAVAPIVADRRFQGEGNKLNLEIFSVLPDKEEAKERVRKKVIEFFQGFEVGQSLIITDLILAVRQFDWVTDVIIKDMNLPQGSANPSATESHKLLVVKEEDVLITIKQQG
>NZ_CP042813.1|WP_044634575.1|2278953_2280630_-|hypothetical-protein
MRQGYLREGLWQNVYLIEFYVDNNTSPSESFAFGVPPESEEFVLTQRKTETKTFGGLVIDDYGHDALKITLSGSTVNNELRRMYHTTGASEYVTGEEEIFRLKTLLEKYKGNINTLGKKILLYDLSKHTNRSRRKKTIDSFCWQVYPGEFKIKRTKEKPNVYTYSIEFTAIPAKDTFVFYNTIFGVDFNKAFDAIEQYLQKLEKSLSFFKSVLEKINEARRFAAACKEVALYAISGTINAFRILLDDTFQLGHSAIALYRETVGAEGIPALIFETGDFVAAMLIDFMTNINVLANNIHAMSKKEFYIPAGVFEDWEVTIEELDALSQLQCSGIYNELCALSVSAQMERPKEYTLPVARGAAITTYGMQIGLITDGMSFESIAQNHYGDSSKAYIIASANSAGSIDDLSARGQKNVLIPVLERSASNYQNRIIGLSGQRDNYGVDIALDENGNILLNDLQTDFKFVTGRRNISQAVLMRLRENINKRVMLQLYGIKTTIPDSESAGSAYILSSIIQTLKQESRIKELLSVSFKGDGDALRIDIEYTDIGGQRRSLSELI
>NZ_CP042813.1|WP_148879061.1|2280633_2281455_-|hypothetical-protein
MRIVIRERSGQVTGQVPLQNTVPRIGMWGTVTDVDSTRNAVNVRLTGGVLLEDVPVASLDEWICEFKDEGYLSGSRNLPPENARVFVLMPTGTFEGAFVLCSSLSMFEKEHQKKFMSTKEQRTEKNVERLRVRPGKWIEKYNYKTGQLELTSSNEKVKIAIADDNNKKEVSVNAFGANITIDKDGNIAVKAATDKKISLNGENLSGIVKADELKTQLDKMSDRIDKMVNTFNGWVVLPNDGGAALATAMKTVIGTMVKEDFSNIKNDKVVHGG
>NZ_CP042813.1|WP_148879062.1|2281461_2282931_-|hypothetical-protein
MMITIHKSPQPKIEIFDYNAPTVPAFTLSAQTHEYTQLLSYSFTESTMDLKGRFQFSIAGGDNNLFNEIQPLQIVKIYEGANTPVFIGVIANKDLSCTMSQGGVQRQINFSGMSITGLIANFQLILDIKFLSLTQIMSAETINKDMVLRINELQTKEPLKIKKFLELTWDTYLGYVGVRYLKPTADKAPVKGKAGESNKIVYDIIKNFMGNDFFEVGEAESIPVPIANTFFNQGINTVQQIWQTILAPPVYEMFSRVNEKGKTKIVVRELPFSFRENGIVHNRWGKLPIRKIKSPHLVDYSLRLSIDEVYTTFFAYIEGSSLSADQYIVIEQTDGDKIEKKILQVDEKKLKTYGMKMLQVAFRGYKKQTEKTETITNAMHKLSLRLRSWFGRLDEMYTGSIRIINDFSEKQIRCGERVSFLGGEFYVRSCDHSWSYGGTPTISLQVIRGGKYNKGGEFVKVMPEMGTSNIELKFDGEETNSLVDISLAR
>NZ_CP042813.1|WP_024751745.1|2282927_2284754_-|hypothetical-protein
MGMKEVAIKLNLETGSFSSSAQTISDAFDKMLGKMKEAQEVGNFDLAAQYAKSAQQMQQMYNGMANGNQAGGGGIAGFNNTVGGISNTAQSVIGQIGAGDAAGGGLTLLGKGAGLLGKLGTGGAIAGAGLLAAVGAGWGVKKLSDLYTSHDDAAEALNASLNNTMRTRFDLSTKEGRGEWRQFAKDYPERKNDFEISKDGKTMIETLESRYKVNTKNIEDAFTKASAAANSFSYSMEDGLSMVKHLTQYGLSSGSYDVARNVFGWSRMMGIQKEEAADFKGTFSRYGNKDADSLAQAYRASSFMGMKEGQYSETLGLLQNIFTDGISKGFTKSIAEIGSTMTFLKNASGNNPLWMGEQGASRYQQLNESGRSATSLSSVSDILTYRAIASLSDAEKARILKEHGLESQGGYLDNMQIAELGFLPEIYKKKMGLFEQMSGKGNKAGMIEMIRKDTGFDYIQAAQFYELMNNGEINKDAYESITNASIRPEYTSRVGASTGSAELWRTWTAELGKGPAELTKFLSVFLSGTRQEEFNTGKLPGMGEGSVNNVTLIKELQQRKQDLAFELQTLYNTFFPDQEKIKENTEELKKINAQLELLLNGEIKVESR
>NZ_CP042813.1|WP_024751723.1|2284774_2285581_-|hypothetical-protein
MVKIKITADNPALQELAAAVKKIGRSDILPATDATFQGCAKMVADSWRAYGQGQKDIPGVPPMKKPSSNYSGGVKVKKSAPLEYTISNESKAAPLLEYGTDGYDMKTTHPYGKKSRVSKQKNPKTKMIELIPYLIVPFSWGTPGTVTFQNTMTEDIYAIAERMKKSVVMEETHFEENWAGEAIERHEYTWADRLNENDLGNADGMVRMSDTPTGKSTYWTFRIISAKSPKNSWINKGIPARNVTEGLKALHEKEIADAIQNALATDLG

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Crispr_ID: NZ_CP042813_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_10

2370190-2370265

Orphan

Consensus_repeat	Method
CCTCTGGTTTTTTCTCCTCAGCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_10

>merge|NZ_CP042813|10|2370190-2370265|CRISPRCasFinder
CCTCTGGTTTTTTCTCCTCAGCTTTTGGATCTTTCACCTCTGGTTTTTTCACCTCTGGTTTTTTCTCCTCAGCTTT

>NZ_CP042813|10|10|2370190-2370265|CRISPRCasFinder
CCTCTGGTTTTTTCTCCTCAGCTTT	TGGATCTTTCACCTCTGGTTTTTTCA
CCTCTGGTTTTTTCTCCTCAGCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_148879098.1\|2380721_2382023_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP042813.1\|WP_148879092.1\|2362234_2362891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879097.1\|2379414_2380629_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP042813.1\|WP_148879100.1\|2385437_2385803_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP042813.1\|WP_044634388.1\|2375551_2376004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879096.1\|2376924_2379162_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042813.1\|WP_148879093.1\|2368600_2369428_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP042813.1\|WP_052335779.1\|2364077_2365883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879095.1\|2372588_2374700_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042813.1\|WP_024753238.1\|2367301_2368438_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|275383
NZ_CP042813.1\|WP_148879436.1\|2366287_2366593_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042813.1\|WP_002701103.1\|2358445_2359141_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133009
NZ_CP042813.1\|WP_024753235.1\|2363126_2363969_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879437.1\|2383285_2384458_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|293733
NZ_CP042813.1\|WP_039943465.1\|2359140_2359614_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP042813.1\|WP_024753233.1\|2361658_2361841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_039943463.1\|2359713_2361075_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|237339
NZ_CP042813.1\|WP_148879094.1\|2371359_2372013_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879099.1\|2384486_2385155_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP042813.1\|WP_024753241.1\|2370532_2370853_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_148879098.1\|2380721_2382023_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP042813.1\|WP_148879097.1\|2379414_2380629_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.26451e-117
NZ_CP042813.1\|WP_039943465.1\|2359140_2359614_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	1.2192e-81
NZ_CP042813.1\|WP_148879093.1\|2368600_2369428_-\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	1.49548e-06
NZ_CP042813.1\|WP_148879099.1\|2384486_2385155_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	2.57292e-113
NZ_CP042813.1\|WP_148879095.1\|2372588_2374700_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.88375e-52
NZ_CP042813.1\|WP_024753238.1\|2367301_2368438_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|275383	sd00036, LRR_3, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	3.99724e-35
NZ_CP042813.1\|WP_148879436.1\|2366287_2366593_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.26087e-08
NZ_CP042813.1\|WP_002701103.1\|2358445_2359141_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	1.75919e-64
NZ_CP042813.1\|WP_148879100.1\|2385437_2385803_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	1.8021e-58
NZ_CP042813.1\|WP_148879437.1\|2383285_2384458_-\|phosphopentomutase	gnl\|CDD\|293733	cd16009, PPM, Bacterial phosphopentomutase. Bacterial phosphopentomutases (PPMs) are alkaline phosphatase superfamily members that interconvert alpha-D-ribose 5-phosphate (ribose 5-phosphate) and alpha-D-ribose 1-phosphate (ribose 1-phosphate). This reaction bridges glucose metabolism and RNA biosynthesis. PPM is a Mn(2+)-dependent enzyme and protein phosphorylation activates the enzyme.	0
NZ_CP042813.1\|WP_148879096.1\|2376924_2379162_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.95281e-48
NZ_CP042813.1\|WP_039943463.1\|2359713_2361075_+\|HD-domain-containing-protein	gnl\|CDD\|237339	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional.	3.53608e-104
NZ_CP042813.1\|WP_024753241.1\|2370532_2370853_-\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	2.52958e-05

>NZ_CP042813.1|WP_148879093.1|2368600_2369428_-|hypothetical-protein
MCLLIYLEKEKKEKKRFLELYNALFNENLTDTKALENVRLGTPFYSTVINDLAYLVEGKLFVFIEHQSTISELIILRVLVYLILTIQKVLKAPNWFARKMKKFPKPVFFVFYNGKENFPLESKLQLSDFFIEGSDEFSIDLVVKVININYDKGHKILEKSPILKDYAFLVKMVNEKGFDKAIDKCLELGVLKGYLEENIMEVKNMLKWEYDYDMDIAVQRAEAEAIGLEKGEAIGLEKGSYQKAIETAKNALKMGLSVDQISILTGLSTDEIEAL
>NZ_CP042813.1|WP_024753238.1|2367301_2368438_-|leucine-rich-repeat-domain-containing-protein
MKKLRFISFAILATALIVVSCPRPTDTPEVPGNVQKAEEKKDSPSGIQIKISGDERIDNTSLPAQTAIKGQKWKDVKTSIEEKVKLSYGWNNGDYHIYQWRLGNENGTLLSDDYKFTTNTTIYAVTNYAKFNLVENGTAIDEYKGYLGEKPRGKIIIPEGVTKINGGDRSGAFSGCSGLTSLTLPDGLTSIGIGAFVDCSGLTSIDLSACTKLTSIEWGAFYDCSGLTSIDLSACTKLTSIGFGAFRGCSGLTSIDLSACTKLTSIEYDTFSGCSGLTSIDLSACTKLTSIGNGAFYDCSGLTSITLPDGLTSIGHYAFEGCSKLTSVTFTNRNGWAVYDDQNYKNKHADISSSGLDDTAKAADLLTTTYKDKYWKRN
>NZ_CP042813.1|WP_148879436.1|2366287_2366593_+|ABC-transporter-ATP-binding-protein
MMFAVMFFVDWRLGILLVILTIISIACMFGMYGDMTFMEKYAKALEKMNSEAVEYVRGMQVIKIFNASVASYKSFYNAISDYKDCVFKYTMSCRVPYNLFF
>NZ_CP042813.1|WP_052335779.1|2364077_2365883_-|hypothetical-protein
MQLPIECKNATHLELHITKATPNKRIWVVSFFAGFEYALDESQIVKIKYQQKKSENKEGSIGRLYFNTIDLTLSNIDRIFDKENPKSKIVNYLTTTATFSVVLSMQQDKMQNRFVLDLGVFSVTDFSSKLSEAKATIKGTDFIGSQKDKEISLGIIENKSAYEVFKTVALKLGLEPLGIDPTLKNITYSLLPLNGTVAKVLNQLCSNTNVFCTTRGNIFVATLLKNKHATLRYPQRYFALNEFKETNATKTQSLIPNVINLSYSTYEYENGIFIKDKKVLFYNKDIIQQPKNWETMPLTEYINDVFIPEKNKPVSYQKTFYAGELPKNFHHIEISDDFLYRSFEYKVETKKNDKGALESVTVKLWNYEKRDDTDQCTIFICVKEKPASTIIDSQDFPVYSHADEYIRGAELEFQPENQNDAAEIERRNIPNKPEIFSVETTGDIQVDRIEVGNYFVRGFFEFYMTRTEKGVTVKAWNYSAVPQTLTVNVYGVRLKKSEQKITIQARNEENIKINGEIVKNISVDGVSDKKSAEEILKTAMKYYKELNGALSDETWSDPRIQLYDFLGFKKLRYPNYSQGIVDEIGLEYAGYLTQKITLRET
>NZ_CP042813.1|WP_024753235.1|2363126_2363969_-|hypothetical-protein
MSYTRLMNKDETGRAPENKVTGEVVNVIQGVPQKLAHSIFFEEDFFIYADAEKRQKLRRGIDFDFENEDTIATEITNKNCWTRITVYKSISQVYIDYKVCGDFVTAEIINEIYDAADAISNDVNALNDKLEANKKELANHKVDTEPHGASKYVNPNSLALRTSAGTLQAANATEGNDLVNLNVLNEKQREQDNATQNKITESARTIYHVLQANEAVLTKDDFSEGLDPNASDYEEQLATRLETHVNDLKPHHNAIRNKDGNLTTGEATLETEAVNKKTAG
>NZ_CP042813.1|WP_148879092.1|2362234_2362891_-|hypothetical-protein
MEQAGGFQNSISPDATPQSIALRTDTGTLKAANATENDDLVNLHTLKKEIDSKVSVIPSAENLFILFFQNTPYVQFPGKPEPGTLFSFDGYHWEKANYGGAFFRAEGGNANGFNGGVQAGGIPDAQGWLGFHGNRGGFAGVKGREGNAGNSGVFQERKRVEGPDNGIVTPVNETLINNYKELYLIEATEFRLSYGGMPIANEVRPVNYTVRLWYLIKD
>NZ_CP042813.1|WP_024753233.1|2361658_2361841_-|hypothetical-protein
MTTEEVAKKAGCKQITARKWALANGVKFIGSSNRKMYIWTDADLARFKARKKPGRPKEST
>NZ_CP042813.1|WP_039943463.1|2359713_2361075_+|HD-domain-containing-protein
MNKMQYPVPPLLAEIAAVFTNAGFQVYLVGGSVRDYLLKKAAHDWDLATDASPEKVRKLFKHTIPTGIKHGTITILYKGKSIECTTFRTEADYTDSRHPDAVHYARSIEEDLSRRDFTINAFAVKLPEGRITDLFNGMRDLRKKIIRTVGNPLERFSEDGLRPIRAIRFAAQLDFSIEPETLKAIPLSIAKIKIISVERFQDEFSKILQTDKPSVAIRLMHESGILQEFIPELSACAGVEQKGFHRFDVFTHSLLVCDACPKEKLQVRLAGLFHDIGKPAMRKKTAHGDYTFYRHEAVSVELTEKILRRLRYPNKIIEQVYHLIGNHMFHYEENWTDAAVRRFIVRVGKEHIDDLFDLRQADTFGLAGQKVQPFHLAEFTAHIDKILKEDSALSIKNLAVNGKELIALGIPAGPMLGAILQELFQTVLDDPAQNTKDSLLKIAEGLYRQKYCK
>NZ_CP042813.1|WP_039943465.1|2359140_2359614_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MIRIGLGYDLHVLEAGKKLLLGGVHIPFEKGEKAHSDGDVLLHAITDALLGAAALGDIGELFPPSDNKWKDADSKKLLQIAWQKILAEGWVIENIDCVIVIEKPKILPFRKKIIESIADILTIQSDCVFVKAKTAEGLGAIGASEAVAALVTALLKK
>NZ_CP042813.1|WP_002701103.1|2358445_2359141_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MSDAVLITAAGTSQRMQIGKKEYLPFSSSDSEQSVLSEVVFRFAQSKLFSVILITVPSGDEEKAEQMVKKDLRVVPFFENKALKIIFAEGGATRKESVFKGLQALTAENPDFVFVHDGARPWISQALLKTIVEKTHELGAVVPAIPVIDTQKEIDETGKIIKHLERKTIKAVQTPQGFPFLKLLAAHASAAGDDKAYTDDSEIYALFAGDVYICEGERENKKVTFPEDLGY
>NZ_CP042813.1|WP_024753241.1|2370532_2370853_-|hypothetical-protein
MKKAFLKTSRIMLVLGLALLATLFGCRQTTEVQNQQKPIPEPEKFAVSFSVDVPEGVEKADFKLTAKVEGAHQNKLETAKLLKQFGDSIEKISKITGLSTEEIEAL
>NZ_CP042813.1|WP_148879094.1|2371359_2372013_-|hypothetical-protein
MKKLRFLGFAIVAIALIVSCPGTSGTPKASENTGGKVQPTPTPAPQPAPAPGESGNTSPDGNTPLGGTKDLSTEDVKTVVDKINQMFEGLGVKVTDSSSDTPVTKEITPNQLKERFKFTNNPKLADSFLTKFIKAALEALKFDDIPAVPDGAKAIEKLGLDLKLVDSTPGQPIKKDTTREQLKARFTVEGDATAFDYFVAYVKEYLNGNNSKNIPSL
>NZ_CP042813.1|WP_148879095.1|2372588_2374700_-|HAMP-domain-containing-protein
MMRRKKKISSIRVRIFLFIGALILLSIMFLATIVDRTTKRMITDDLKRSLTDATANAAKLFDSHMREWWEYASGLALSDTLQDPDISYLKKAQRLEGFTKAEGENIKHLIVDAQGRLYLANGDVVDVSKQDWFIESKGGRNKYFSTPFISKVNKELISVICVPVFDINGNFFGAFQLQIDGRFLSMDSLPDFNLEGKTSQIFILDKNGTHIANKDLTFVTKRVNRIEEAKSDPSLKSLATAMSKAISEESGLINFKYNGIDRVGGFAKMKQTGWTVVITQDVKELEAPLYSLRIKLLFINIAVLIAAFCVIFFIVQSITKPLNRTVDALKNIAEGEGDLTVRLPVQGNDELTQVSAYFNKTMEKIRTMTKKVGVNISAMHELGANLSSNMTETASAVNQISSNIEGVKQQVINQSASVTETSATMEEIIRTIEQLNASIESQATSVTQSSASIEEMVANIASITESLNENNQAMGDLAEQIMAGRNGAVDANNFVKQMSERSDALGEAANVIQNIASQTNLLAMNAAIEAAHAGDSGKGFAVVADEIRKLAEESNNQGKQIGAMIKETIAIIVEMTKAGKATEEIFNRVYQVSSKIAEREEVVAAAMQEQDRGNKEVLQTIKTISEVTSEVKGGSTEMLSGGRTIAKEMQKLDELTRMITDSMNEMASGVVQINNAVQEVQEMAHQNKNAIDSLNNEVGKFKV
>NZ_CP042813.1|WP_044634388.1|2375551_2376004_-|hypothetical-protein
MKKNLALLFGALICFSIFSCAGGIVNVPFVISVYIEKEDGTRFTENEVSLLKLNSNGRIYTDKCDENGMPIYKDGGFRIQYELGYARSMRKIKEIENSWKKKMNEFWFMIDGTSIGYEVFTMKPLGENYVISSEPKESKITYIIKLKKKL
>NZ_CP042813.1|WP_148879096.1|2376924_2379162_+|HAMP-domain-containing-protein
MQKISVINNIRRRSVGFKAVVVVGIILFVLLSSHLIRDSYQQLNYSMGLHNEIAKKETIAFAQTVKTILSNVNQLASDTESLIYSELRLPKSQRSRDRLIDTSIRFIKSNPYVVNICLYFEPNAFDGRDADFANHPIYSPVNGRFVNYIELLDSKITVGVTHKLQDPTNLPDWYSVPFNTQRPVILPPFENIDQYGHPQLMVTCAIPIIHKNEAIGVLNVDINITTLQTEIELLGGTTSESFMMLCTNTGVIVSHGFDQTQILGNAIEMFPQFIEHFEKNQRNEVSELLGAYHKTGERVKYLFVPVHVQEAESPWTLISVKELASYEKAEKERTFFNILRYLAIIVIITIFLILATRLFITRPLHRMSLALKNISEVDGDLTVRLPVKGKDEIAEISHYFNQTIEKIGNSIKSVGKTTENMQKVSVELSTNMSETASSVHQISANIAGVKEQTLRQATSVTETVSTMEQISRTLVQLNNSIQNQASNVAESSSSIEQMVAGVTSITNQLDRNNDTIFQLHEFSMAGKKGVATANAFVKQIAEQSGALQEAANVVQSIAAQTNLLAMNAAIEAAHAGEAGKGFAVVADEIRKLAEESNVQGKQIGNMIKETLRVIEDVTSASTQAEETFGKVYELVEEISKSEKNILAAMQEQDVGNREVLNSILSINDITIEVKKGSEEMLVGGRQVNDEMHKLSEMTHLISNSMNEMASGILQINQAVQSVNEMAQHTRDSIESLNKEVRKFKV
>NZ_CP042813.1|WP_148879097.1|2379414_2380629_-|IS256-family-transposase
MARKRPETNRTKIAKMLIEEYQPNSVQDIQDAIKDLLGDTLEQMLKAELDEHLEYEYGATPLGLNTRNGSSKKTVKSSSGEIEISVPRDREGTFEPQVVKKYQKDISNIENQIISMYAKGMTTRDISNHIKEIYGFGLSESMVSKITNKILPSIEEWQNRPLVSVYPIVFLDAIHYNVRENSIIVKKAVYIALGYTSEGFKEILGMWVGENESSKYWLMVLNQLKDRGLEDVLIFSTDNLTGFTQAIEAVYPKAEIQKCIIHQIRSSTKYVSYKDIKELMNDLKTVYKAPTEEIALVQLDEFEEKWGNKYPTCVDSWRRNWAELSTYFKYPQEMRTLIYTTNSMENFNRQLRKVTKNKSIFPSDYALQKSLYLAMIDASEKWTQRIRGWDKIKSQLSIFFEGRI
>NZ_CP042813.1|WP_148879098.1|2380721_2382023_-|pyrimidine-nucleoside-phosphorylase
MRIVDIIEKKKNKEPLTEEEIKFWIQGVSKDTIADYQTSALLMAIRLNGMDDYETAKLAEAMMYSGDVMDLSDIEGIKADKHSTGGVGDKTSISLSAMVAACGLKIAKMSGRGLGHTGGTLDKLESIEGFNISLTEEEFKKQVNEIGIAIIGQTGDLVPADKKIYALRDVTATVDSIPLIASSIMSKKLASGSDTILLDVKYGEGAFMKTVEDAKKLARAMISIGNSLGRNTMAMITDMNQPLGNTIGNALEVEEAVQTVLGQGPEDFTELCLCAGEIMLVQGGVTSSKDQARKMLEEAISSGRAFEKLVQMVDYQGGNVEQIKDTSLLPQSKYQTEIKSLESGYIANINSMELGILATLLGAGRAEKDDPINYAVGLRMNVKKGDQVEKGHVLCRVHHDSDLDDQWIQRFYKAISYSDEPVERIPVVEEILE
>NZ_CP042813.1|WP_148879437.1|2383285_2384458_-|phosphopentomutase
MKRVFLIVMDSFGIGEMPDAWLYKDQGSNTLRSIVASDKYSTPNLESLGLFNIDGVDFKKSHPSPKANFARMAESSAGKDTIIGHWEIAGIISKSPLPTFPEGFPEEFLQEYSKRVGRGILCNQPYSGTKVIADYGQDHIKTGDLIVYTSADSVFQVAGHEEVLGLDELYRCSQLARDMLVGEELGVGRVIARPFTGQYPNFTRTSNRRDYSLAPPRKTILDYLMEAGLETISVGKISDIFSGRSISRSYPSLNNADGMEKVLDLMEKDFKGLCFVNLVDFDMLYGHRNDVDGYAGAASEFDRDLERLMSKMEAEDLVIITADHGCDPKTPSTDHSREYVPMLAYSQSIKAGVNLGTRKTFADIGATILEIFGLDGDIAGQSFFKDISIN
>NZ_CP042813.1|WP_148879099.1|2384486_2385155_-|deoxyribose-phosphate-aldolase
MKKKEIMSHVDHTLLSPVASWEEIEKLADEAIEYGAASICIPQSYVARVKDKYGDRVNICTVVGFPLGYNSSSSKLEEVRSALEDGANEIDMVINISHVKNQDYGKVEEEIKAIREACQDKVLKVIIETCYLTEEEKIQMCKIVSRAGADYIKTSTGFGPGGAKMEDILLFKDHLEGGVKIKASGGIRTLEDLIGFIQAGAERLGSSSAIKILEGDQGRGSY
>NZ_CP042813.1|WP_148879100.1|2385437_2385803_+|SsrA-binding-protein-SmpB
MEEDYQPNSVQDIQDAYISFHRDEAYIYNMHISPYQEASIFNEEPTRPRKLLLNRREIRKLQSDVQKAGYTIIPLKVYLNDRGLMKIEIATAKGKKLHDKRQDIAKRDAQREMSRAMKYNR

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Crispr_ID: NZ_CP042813_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_11

2646357-2646504

Orphan

Consensus_repeat	Method
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_11

>merge|NZ_CP042813|11|2646357-2646504|CRISPRCasFinder
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTCAAGGCAGCAGCGGCTCAAAAACTGTTTTATCAATCTCCTCAATCTTATGCAATAACGGCTTCAGCATTCCGATGGTAACGGGCACGGATGCCCGTGGTTC

>NZ_CP042813|11|11|2646357-2646504|CRISPRCasFinder
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	AAGGCAGCAGCGGCTCAAAAACTGTTTTATCAATCTCCTCAATCTTATGCAA
TAACGGCTTCAGCATTCCGATGGTAACGGGCACGGATGCCCGTGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024753167.1\|2653099_2654509_-\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_CP042813.1\|WP_024753169.1\|2648431_2649634_-\|diaminopropionate-ammonia-lyase	unknown	unknown	gnl\|CDD\|236186
NZ_CP042813.1\|WP_024753173.1\|2642713_2644090_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274468
NZ_CP042813.1\|WP_148879166.1\|2635127_2635463_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NZ_CP042813.1\|WP_002699312.1\|2656051_2656675_-\|cyclodeaminase/cyclohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377428
NZ_CP042813.1\|WP_148879168.1\|2654705_2656052_-\|glutamate-mutase	unknown	unknown	gnl\|CDD\|379405
NZ_CP042813.1\|WP_039915224.1\|2652305_2652971_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|377981
NZ_CP042813.1\|WP_002699320.1\|2651082_2652276_-\|knotted-carbamoyltransferase-YgeW	unknown	unknown	gnl\|CDD\|274517
NZ_CP042813.1\|WP_024753171.1\|2644656_2645979_-\|putative-aminohydrolase-SsnA	unknown	unknown	gnl\|CDD\|235963
NZ_CP042813.1\|WP_002699337.1\|2637804_2638776_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|239599
NZ_CP042813.1\|WP_024753178.1\|2635459_2635963_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP042813.1\|WP_002699340.1\|2635941_2636382_-\|molybdenum-cofactor-biosynthesis-protein-MoaC	unknown	unknown	gnl\|CDD\|237733
NZ_CP042813.1\|WP_024753177.1\|2636382_2637351_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP042813.1\|WP_002699321.1\|2649741_2651064_-\|YgeY-family-selenium-metabolism-linked-hydrolase	unknown	unknown	gnl\|CDD\|183836
NZ_CP042813.1\|WP_024753175.1\|2638806_2639751_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP042813.1\|WP_024753166.1\|2657069_2658746_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP042813.1\|WP_081718799.1\|2640078_2642628_-\|selenium-dependent-xanthine-dehydrogenase	unknown	unknown	gnl\|CDD\|132354
NZ_CP042813.1\|WP_002699307.1\|2658747_2659641_-\|glutamate-formimidoyltransferase	unknown	unknown	gnl\|CDD\|131079
NZ_CP042813.1\|WP_024753176.1\|2637331_2637808_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP042813.1\|WP_148879167.1\|2646727_2648410_-\|selenate-reductase	unknown	unknown	gnl\|CDD\|236630

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024753167.1\|2653099_2654509_-\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
NZ_CP042813.1\|WP_024753169.1\|2648431_2649634_-\|diaminopropionate-ammonia-lyase	gnl\|CDD\|236186	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.	0
NZ_CP042813.1\|WP_024753173.1\|2642713_2644090_-\|hypothetical-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.44944e-116
NZ_CP042813.1\|WP_148879166.1\|2635127_2635463_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	1.44273e-20
NZ_CP042813.1\|WP_002699312.1\|2656051_2656675_-\|cyclodeaminase/cyclohydrolase-family-protein	gnl\|CDD\|377428	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase. Members of this family are thought to be Formiminotransferase- cyclodeaminase enzymes EC:4.3.1.4. This domain is found in the C-terminus of the bifunctional animal members of the family.	2.71409e-72
NZ_CP042813.1\|WP_148879168.1\|2654705_2656052_-\|glutamate-mutase	gnl\|CDD\|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	5.03816e-158
NZ_CP042813.1\|WP_039915224.1\|2652305_2652971_-\|PAS-domain-containing-protein	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	4.11186e-33
NZ_CP042813.1\|WP_002699320.1\|2651082_2652276_-\|knotted-carbamoyltransferase-YgeW	gnl\|CDD\|274517	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with selenium-dependent molybdenum hydroxylases.	0
NZ_CP042813.1\|WP_024753171.1\|2644656_2645979_-\|putative-aminohydrolase-SsnA	gnl\|CDD\|235963	PRK07203, PRK07203, putative aminohydrolase SsnA.	0
NZ_CP042813.1\|WP_002699337.1\|2637804_2638776_-\|molybdopterin-binding-protein	gnl\|CDD\|239599	cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.	9.48134e-124
NZ_CP042813.1\|WP_024753178.1\|2635459_2635963_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	2.54483e-69
NZ_CP042813.1\|WP_002699340.1\|2635941_2636382_-\|molybdenum-cofactor-biosynthesis-protein-MoaC	gnl\|CDD\|237733	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein.	1.88551e-43
NZ_CP042813.1\|WP_024753177.1\|2636382_2637351_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.46454e-91
NZ_CP042813.1\|WP_002699321.1\|2649741_2651064_-\|YgeY-family-selenium-metabolism-linked-hydrolase	gnl\|CDD\|183836	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase.	0
NZ_CP042813.1\|WP_024753175.1\|2638806_2639751_-\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	3.30633e-48
NZ_CP042813.1\|WP_024753166.1\|2657069_2658746_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP042813.1\|WP_081718799.1\|2640078_2642628_-\|selenium-dependent-xanthine-dehydrogenase	gnl\|CDD\|132354	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase. Members of this protein resemble conventional xanthine dehydrogenase enzymes, which depend on molybdenum cofactor - molybdopterin bound to molybdate with two sulfur atoms as ligands. But all members of this family occur in species that contain markers for the biosynthesis of enzymes with a selenium-containing form of molybdenum cofactor. The member of this family from Enterococcus faecalis has been shown to act as a xanthine dehydrogenenase, and its activity if dependent on SelD (selenophosphate synthase), selenium, and molybdenum. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP042813.1\|WP_002699307.1\|2658747_2659641_-\|glutamate-formimidoyltransferase	gnl\|CDD\|131079	TIGR02024, FtcD, glutamate formiminotransferase. This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism. [Energy metabolism, Amino acids and amines].	4.43308e-154
NZ_CP042813.1\|WP_024753176.1\|2637331_2637808_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.32528e-77
NZ_CP042813.1\|WP_148879167.1\|2646727_2648410_-\|selenate-reductase	gnl\|CDD\|236630	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional.	0

>NZ_CP042813.1|WP_024753171.1|2644656_2645979_-|putative-aminohydrolase-SsnA
MIITNGKVITNDKNSTFYDNGAVYIKDNIIVDVGNSDEIKKHYKTETILDAKGGIILPGFICTHSHIYSAYARGISVTKPTDNFFNVLENLWWSLDSKLKEKDVELNALTTYIDSIMNGVTTVIDHHSGPQSLDGSLFIIAEAAKKLGIRTSLCYEVTDRYGDDVRDRAIKENIAFIKAAQKNESDMIKGLFGLHASFTVSDETLYKVREAMEGVYDGYHIHVAEGLEDELLCLKKYKKRIVNRLFDFDILGERTIAAHCVHINAGEMDILKKTNTNVVHNPESNMNNAVGTTNVLKLLEKGIVVGLGTDAYTNDMYESMKVAKILMSHEASDPTVGFAETKQMQFTNNPIILSKYFNKNLGVIEKGAYADIAVAEYNPPTPMHKDNWFGHLVFGLSGKQTIHTVINGKIVMKDREVLGIDVDKIMSESRIRAAEIWKEM
>NZ_CP042813.1|WP_024753173.1|2642713_2644090_-|hypothetical-protein
MEKDTKGLLFQLEGKPSLNETMPMAFQHVVAMIVGCITPALLVGGVAGANLSQDNLVLLIQMSLVIAGLSTLVQLFPIGKKIGSSLPVILGVSFAYVPTMQSVASTYSKNPAFGSEKAIGVIVGAMIVGGACALLFGMFVKYLKPLFPPLVTGTVVFTIGLSLYPIAIRYIGGGNAMAKDFANPKNLFVGFLTLAIVTALNHFGKGFIKLSSILISIIIGYLVSIPLGLVNFSKIASSSIIINQNPILHFAPQFETSVIISFVILFIVNSVQAIGDFTATTVGGLDREPTEKELSGGIIAYGITNMLGSLIGGLPTATFSQNVGIVGTTKVVNRRVFAQAAIIILIAGLIPKFGALLTTIPTPVLGGATIPVFSSITMTGIKLIAKEPLSFRNTSIIGLSVAIGMGVTAVPQLFNVEVYGPTALMVKTAIGSSPVVLATLCAIILNVIIPKKAEDIAK
>NZ_CP042813.1|WP_081718799.1|2640078_2642628_-|selenium-dependent-xanthine-dehydrogenase
MYELNINGLNYKTDKDKKLIRFLRDDLRLTSVKDGCSEGACGTCTVLIDGKPTKACIPTVAKSVGKTIITVEGLSDWEKEVYAHSFSIAGAVQCGFCIPGMVIAAKALNDTNDNPTEEEIRHAIRNNICRCTGYVKIIEAIQLSSDILHNRKSIEKEDEKTGVGTNTIKIDSYDKVLGTGMYTDDLYLENMAYGRLLKSKYPRAKVLSINTEKAEALEGVIGVLTAKDVPHNKIGHIIQDWDVFIAEGDFTRYVGDDLALVVAEDDETALKGLSLIEVEYEVHTPVSTIKQALSEDAPKLHEKGNMCAEKHVARGDAAKALENSKYIVTDKFTTPFTEHAFLEPECSVAFPYNNGVKVYSSDQSVYDTRKEIAIMFGWEPERIVVENMLVGGGFGGKEDMSVQPHAALAADKFKRPVKVKLTRQESINTHPKRHPMEAEFTIGCDENGILQGMKADIYFDTGAYASLCGPVLERACTHAVGPYNYQNTEINGYGLYTNNPPAGAFRGFGVCQSCFAIESLLNILAEKVGISPWEIRYRNAIRPGQVLPNGQITDPSTSLVETLLAVKEVYEKNKDRAGIACAMKNAGVGVGLPDKGRCKLVVKDKTVEIYSGATDIGQGIATVLVQIACETLGLKKHEVKFMVVNSKDSPDSGTTSGSRHTLITGEACRGAAALLLEDLKNSSLEELEGKEYFYEYFDPTDPLGSPKENPKSHLAYGYATQVVILDDGGKVADVYAAHGIGRAINKKALEGQIEGGVVMGLGYALTEDFPLENSVPKVKYGTLGLLKATNSPKVHSIIVEKEGIKEAYGAIGVGEITTIPTAPAAAGAYYAFDKKFRTNLPLKETAYKK
>NZ_CP042813.1|WP_024753175.1|2638806_2639751_-|XdhC-family-protein
MIETFVFARELFLKTTPFVIATIIDKKGSSPREVGASMIVTQNGLAQGTIGGGAIENEAIKKAKSLIEENSSSIEEYILTDNTAASIGMVCGGSNKIFLKYIDTKNKIYLEIFNRLIENYKEKETKLIFDLERLNIFANIDGEIFPNETISGNSFQLLVKDSIKVFVFGGGHVSKAFVKILDFLKLNSVVVEERAEFLEEKDFPNSKRILIGYEDIDTVNITSDDYVCIITRGHTSDSIVLEKVLEKNPQYIGVIGSKRKVALMFKNISDKYSKTMLDKIHSPIGLDIGAQTPEEIAISIAAEIIGEYRAAPLR
>NZ_CP042813.1|WP_002699337.1|2637804_2638776_-|molybdopterin-binding-protein
MKVIQTKDAVGKILFHDLTQIIPGKSKSARFKRGHVIKEEDIEVLLSMGKEHVYVYELDDTHYHEEDAARILAGICAGENIRLSDVSEGRINLISEIDGLLKVNVKLLHTINSMPDVMIATKYNDSVIKEGDVLAGTRAIPLIIKKEKIKNCLDSAQGEHILKVLPYKKQRVGIITTGSEVFSGKIKDGFKEVLTEKLLPFDFEIIHHSYSKDDIDSILTEIRAADKKNCDLILCTGGMSVDPDDLTPGAIKAYADHVVSYGTPVLPGAMFLVAHKNRTAVLGLPGSIIFNKKTVFDLILPKIAAGEIITKEYLISLGHGGLL
>NZ_CP042813.1|WP_024753176.1|2637331_2637808_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MNTLTHFDERGNARMVDISNKSVTKRKAVACGKITMNNNVFEKIKNKEIEKGDVLTVAQVAGIMAAKKTSDLIPMTHPINTEKLALSFELDETEHSVIAVCEAEIYAKTGIEIEVITGVSIALITIYDMVKALDRSMVISDIKLVHKSGGKSGEYNRT
>NZ_CP042813.1|WP_024753177.1|2636382_2637351_-|GTP-3',8-cyclase-MoaA
MSIIELKDSFNRKIDYIRVSLTKNCNLRCKYCMPECGVYKESLLKIKDYEKVLLALSEVGIKKIKITGGEPLVRKDTMDLVKSLKESKKFTKITLTTNGLLIDKYIDEIINYMDGVNISIDSLNDSMYKYITGGELQNLKENIRLLLKRGYKNIKLNTVLIRGFNDKEILNLITFAEDNNLILRFIELMPMGNGKAYNKFSREEIDCVVSKVYKNKKRYNGKLGNGPAEYFTYDNLKIKIGFIDALGHSFCKNCNRIRLDSDGKIVFCLCYDTGFSTLDYIDGSITKDEFLKRVTQEILLKPMENIFNKKSESSYSMNELGG
>NZ_CP042813.1|WP_002699340.1|2635941_2636382_-|molybdenum-cofactor-biosynthesis-protein-MoaC
MGTLISINISPKRQTVKKEVTEANLIENFGIENDAHGGNWHRQVSLLSYESFLQFKDTIKIPMEHGIFGENLLISGIDFSKIKIGDRIIISNAELEVTQIGKDCHKGCEIKDIVGRCIMPEEGVFSKVIQGGAIKKGDAVCLKSIL
>NZ_CP042813.1|WP_024753178.1|2635459_2635963_-|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MFKVHIITVSDSSYYENKKDLTGPALRDFLTEHSFEVCGYDIVPDEINPISNLLIEISDSQKVNLVITNGGTGFNKRDVTPEATLKIADKIVPGFGEEMRRRSLEITPFGILSRAVSVIRNHTLILNVPGSPKAAVENLGFIITAIPHALKILTNEKNDCAKVDDSR
>NZ_CP042813.1|WP_148879166.1|2635127_2635463_-|LysR-family-transcriptional-regulator
MKNKFNHYIKITLVNENKFFGPGVYDLLTLIKKEGAIKTAAQKMGLSYSKALKMIGNMEKELGSKIVDRKSGGITGGESTLTEYAEQFLENYKKLEEEVKSYSEKIFNKYF
>NZ_CP042813.1|WP_148879167.1|2646727_2648410_-|selenate-reductase
MSDTMYGVGFKNILKHIFTEYEKKQTIYNVKGIFKKNNDKVLKIFGSDLESPLGVAAGPHTQLAHNIAADYVGGARFIELKTVQYLYGEELGIQRPCIRADDEAYNIEWSSEFRADIARDEYVRAWFVCKVLAKELDLGSPEGFIFNMSVGYNLEGIKHPLIDEFIETLKDARNTKVYKQCKEDLIELLPMFKKVDREFIESISPNICNSLTLSTMHGTPPEEIEKIVKYILTEKKLHTYIKCNPTLLGYEYVRKVLDEMGYDYIQFGRHQFDIDLQFDDAVVMIKNLQNLAKNLNLEFGVKLTNTFQVAINNRELPGSDMYMSGKALYPLSIATAAKLSKAFDGKLPISFSGGADKNNIKELFDAGIFPVTVCTVLLKPAGLDNLKQLADKLEEVEYKKNKITDTEKIEALRKDSLKNKNYIKSEKERKKYDLHKSFEGIKDDSYECRVLCKNCIRVCPNRANEELVLDDKKIIVHIDSVCNECGNCQFYCIEPARPYKDRITIFNTLDDFHNSENPGFYKKQGEFYYRLNGDEGVGELPKELKNIYSKIAEDMPYYIE
>NZ_CP042813.1|WP_024753169.1|2648431_2649634_-|diaminopropionate-ammonia-lyase
MEKILLASMRKDPRDVDIRFINDTVAKRVINFHKSFPQYEKTPLVELAHLSNYLGIKNIFVKDESYRFGLNAFKVLGGSFAIGSYIADRLGMSVEDLPYERMISKEIKEKLGEITFATATDGNHGRGVAWTANQLKQKSKVFMPKGTARERLDNIRAENADADIYEYNYDECVRLADEYAKTHNGILVQDTSWEGYEDIPRYIMQGYMTMAYEAYNELKEKGSLPTHIFLQAGVGSLASAVTGFFANVMKDAIPTIVIVEPHKAACLYQTAKADDGKLHPVTGDMDSIMAGLNCGEPVTVGWPILKKYAHSFLSVDDCFAAHGMRLLGNPLKNDKKIISGESGAVTAGVVSKLMTDDSLKNIKEKIGLDSSSIVLCFSTEGDTDKDNYLKTVWDGKDSSL
>NZ_CP042813.1|WP_002699321.1|2649741_2651064_-|YgeY-family-selenium-metabolism-linked-hydrolase
MANMDFEKIKAKAAEYHEDMIKFLRDLVQLKGESCEEGEKAKRIQQEMDKVGFDKTWIDKQGNVLGEMGTGKTIIAFDGHIDTVGIGNRDNWKFDPYEGYEDEHTIGGRGTSDQLGGPVASVYAAKIMKDLGLLNDKFKVLVTGTVQEEDCDGNCWLYMIEQEGIKPEFVVSTEPTDGGIYRGQRGRMEIRVEVSGVSCHGSAPERGDNAIYKMAEILKEVEALNENPADDSVEIKGLVKMLDKKYNPEYEEANFLGRGTVTTSEIFFTSPSRCAVADSCAISLDRRMTAGETWESCIKEIEDLPACKKHNAKVTMYKYARPSWKGLSYEQECYFPTWVIPKDHKVTVALEKAYKALYGDKRISPPIKKEEEKRFSRPLVDKWTFSTNGVAIMGRHKIPTIGFGPGAEDQAHAPNEITFKQDLITCAAVYAALPTMYIEG
>NZ_CP042813.1|WP_002699320.1|2651082_2652276_-|knotted-carbamoyltransferase-YgeW
MDFKELIGSLDKLDFKGLYNENFFLTWDKTDDELKAVFAVADAIRKLRENNKSAKIFDSGLGISIFRDNSTRTRFSFASACNLLGLEVQDLDEKKSQIAHGETLLETANMVSFMADVIGIRDDMYIGKGHTYQKEFADSVKLGYEEGILEQKPTVISLQCDIDHPTQMMADTLHFAHYFNGFENLKGKKIALTWAYSPSYGKPLSVPQGGIGLWTRLGMDVVLAHPEGYNVMEDVVGVAKNNVKKYGGSFTISNSMEEAFKDADIVYPKSWAPFAAMEERTELYGRGDFDGIDKLEQRLLKQNATHKDWTVTEELMKLTKNGNALYGHPLPADITGVSCEAGEVDKKVFDKYRKELYTEASFKPYIIAAMIFLQKIQNPKAKLEELWNKDTARINDK
>NZ_CP042813.1|WP_039915224.1|2652305_2652971_-|PAS-domain-containing-protein
MERDEKERILEQYISIAQFISVVAGPNCEVVLRDYHKGYSKIIFMVNGRLSNRKVGDEITGYTLEKIMRSDYRKHDCVLNYIIINESNQRVFRASTYYIKQGGELIGLLCVNYDLTKYLEFRDFYTNEVLYGLEENLAGSKDYFDESMDSILEGIIRNVFVHWDRNIPVKNIEAEGNPIRELYKLNVFKYKGSVNKVAELLDISAQTIYRYLGEIEKSIQE
>NZ_CP042813.1|WP_024753167.1|2653099_2654509_-|dihydropyrimidinase
MNILIKNGTIVTDSEVKKADVFIEGEVIAGIGDFAHKEKTCEAVYDAAGLYVMPGLIDPHTHMELKQSETYTSVDDFYTGTIAAACGGTTMIIDHIAFGPQGCNLHYSLNNYKELGKKSVVDYSFHGVIQHVDDSILEELYDIVKNEGIASFKAYSTYGYAMNEVDFYKIIEVMKKAGGLLTIHCENDKITNYLRNKFVSENKISPIYHAYSRPNEAEAESVDELLNLAKLIGDGPIYIVHTSAHESVERIRLGRALGQKNLYAETCTQYLTLTEEKYFEDGDEEGMKYLMAPPLRKKADRESLWNALEDKTLQVVATDHCPFNLKRDKLPHIKNFTASPGGAPGVEERPMVVFSEGVMKGRMSLNRFVEVMSTNAAKIFGMYPKKGALKVGSDADITIIDPNRKKTISVKTQHSVCDYNTYEGFESKCSIAMVFLRGKLVAQYGKFLGKKGDGAFVFRKREQAYAAVR
>NZ_CP042813.1|WP_148879168.1|2654705_2656052_-|glutamate-mutase
MKYLLVDLGSTYTKLHIVDTEKNAVTAAASAYTTVETDVAVGFNVAFQKLKDAGAADYDRILGCSSASGGLKIVVIGFSKSLTTEAARLASLSAGGRILKIYSYELSDEDVAEIEKSGADIIVLSGGTENGNKQNIIVNAEKLSAANLQNATLLVAGNTAANPKIKAIFEQSPIVPVFTENVMPATNVVNYKPLRETIGNIFINTIAFAKGIHELSKNFEILLPTPVAVQKAVAAVKKVKGAEVMAVDIGGATTDVHSVAKSFHGEENILSPLFEDPYEKRTIEGDMGMRYSACALYESVGEEAFRKFGIENAKEKTDFRFRNTAYIPETFDEYEFDQIMAHIAAKEALKRHVGTVKKVPTSTRTMFQQNGKDLRFVKYFIGTGGVLIHSKAPERILCAIHQMEENYLAPKNCTFLLDKSYLLASAGLIATVDEQAACKLLEKYLEKV
>NZ_CP042813.1|WP_002699312.1|2656051_2656675_-|cyclodeaminase/cyclohydrolase-family-protein
MLKDLTVVEFVNETASNSPAPGGGSIAALNASVAAGLLTMVANLTVGKKKYLDVSERMEEIAKVCGKYKDTFVDGIDKDANSFNGVMDAMKLPKETESEQKVRSAKIQEGYKEAIAVPLSLGTEVTALYPYAKELAETGNANAITDVAVALINIKAAVEGAFLNVRINLNSLKDEAYKAELNKKMDEVQALVKKNDAEIMEIVKTKL
>NZ_CP042813.1|WP_024753166.1|2657069_2658746_-|formate--tetrahydrofolate-ligase
MEFKTDIQIAEEAKLEPIADVAAKIGISSDELENYGKYKAKISWEALDRLESKKDGKLILVTAISPTPAGEGKSTVSIGLTQGFNKIGKKSAVALREPSLGPVFGVKGGAAGGGYAQVVPMEDINLHFTGDIHAITAANNLISAMIDNHIHQGNALNIDTREVVWKRVLDMNDRSLRNIVISLGAKADGVPREDHFMITVASEIMAVLCLSKTLTDLKERVGKIIVAYAKDGSAVKVSDLKAEGAVAMLLKDALKPNIVQTLENTPAFIHGGPFANIAHGCNSILATKLALKTSDYAITEAGFGADLGAEKFMDIKCRMSGLSPDAIVIVATIKALKMHGGVPKTELKAENIAALEKGFANLKRHVENVHKFGVPAIVAINKFANDSDAEIAKLKELCKQLNVRISLCECWEKGGAGAEDLAQQLVELIDEGKKDFKYLYDVNDSIETKVNTIVKEIYRGKGAVFTKAAKGQVKKLEALGLDKMPICVAKTQFSFTDDASVMGAPEDFTIEITDVRVSNGAGFIVVQTSNIMVMPGLPKIPAAENMDIDNNGRVSGLF
>NZ_CP042813.1|WP_002699307.1|2658747_2659641_-|glutamate-formimidoyltransferase
MKRVMCIPNYSEGRDLEKIEKIVECFRAKENVRLIDYQPDADHNRVVVEVIGEPSAVVKAVIESVKVAAQVIDMSTHQGAHPRMGAVDVIPFIPVTETTTAECVEYAKEVGKAIGDMGIPVYLYEDAATKPERTNLASIRKGQYEGFFDKIKDSEWKPDFGPAEMNAKSGVTAVGARFHLVAFNVNLNTPNLEVADKIAKKVRFIGGGLRFVKAIGLELKEKNQVQVSMNLVNFEKTAIYQALEMVKSEARRYGVSVANTELIGLLPLQALIDSAAYYMQIEDLKAEQVLETLLIGE

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Crispr_ID: NZ_CP042813_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_12

3073562-3073739

Orphan

Consensus_repeat	Method
CAGATTGCTCACATTAAAAGAGGTGAGTTTATTCTTATCGCACTTCAGTTCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042813_12

>merge|NZ_CP042813|12|3073562-3073739|PILER-CR
CAGATTGCGCACATTCAAAGAGGTGAGTTTATTCTTATCGCACTTCAGTTCGGCAAGCTTACTCAAACCGCTTAAATCAAAAGAGGTGAGTTTATTCTCCGAACAGCCCAACAAAGTTAGAGCATTCTGATTGCTCACATTTAAAGAAGTGAGTTTATTTTTATTGCACTTCAGTTCG

>NZ_CP042813|12|1|3073562-3073739|PILER-CR
CAGATTGCGCACATTCAAAGAGGTGAGTTTATTCTTATCGCACTTCAGTTCG	GCAAGCTTACTCAAACC
GCTTAAATCAAAAGAGGTGAGTTTATTCTCCGAACAGCCCAACAAAGTTAGA	GCATTCTGATTGCTCACATTTAAAGAAG
TGAGTTTATTTTTATTGCACTTCAGTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_148879285.1\|3069684_3070704_-\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|379118
NZ_CP042813.1\|WP_024752070.1\|3060457_3060889_-\|hemerythrin-family-protein	unknown	unknown	gnl\|CDD\|274154
NZ_CP042813.1\|WP_039943393.1\|3067434_3068079_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341157
NZ_CP042813.1\|WP_002697041.1\|3076298_3077489_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379330
NZ_CP042813.1\|WP_148883963.1\|3068113_3069382_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341151
NZ_CP042813.1\|WP_002697062.1\|3089992_3090331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879283.1\|3064377_3067407_-\|HsdR-family-type-I-site-specific-deoxyribonuclease	unknown	unknown	gnl\|CDD\|223683
NZ_CP042813.1\|WP_148879288.1\|3081167_3081962_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NZ_CP042813.1\|WP_002696999.1\|3058252_3058858_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP042813.1\|WP_148883975.1\|3077764_3080884_-\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP042813.1\|WP_148879287.1\|3074769_3075051_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752071.1\|3058838_3059957_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP042813.1\|WP_024752065.1\|3072760_3073105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752058.1\|3090682_3091750_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|184456
NZ_CP042813.1\|WP_148879289.1\|3091906_3092113_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002697051.1\|3082699_3083965_-\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP042813.1\|WP_024752069.1\|3061081_3062659_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237608
NZ_CP042813.1\|WP_024752067.1\|3070696_3072277_-\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|211578
NZ_CP042813.1\|WP_024752063.1\|3075222_3076302_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP042813.1\|WP_024752057.1\|3092372_3093407_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|178323

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_148879285.1\|3069684_3070704_-\|virulence-RhuM-family-protein	gnl\|CDD\|379118	pfam13310, Virulence_RhuM, Virulence protein RhuM family. There are currently no experimental data for members of this group or their homologs. However, these proteins are implicated in virulence/pathogenicity because RhuM is encoded in the SPI-3 pathogenicity island in Salmonella typhimurium.	6.54756e-153
NZ_CP042813.1\|WP_024752070.1\|3060457_3060889_-\|hemerythrin-family-protein	gnl\|CDD\|274154	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.	1.39748e-35
NZ_CP042813.1\|WP_039943393.1\|3067434_3068079_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341157	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.Ara36733I TRD1-CR1 AND S.Ara36733I TRD2-CR2. Actinomyces radicidentis S subunit (S.Ara36733I) recognizes 5'... CGAGNNNNNCTG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.71156e-96
NZ_CP042813.1\|WP_148883963.1\|3068113_3069382_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341151	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I) TRD2-CR2 and Moraxella catarrhalis S subunit (S.Mca353ORF290P) TRD2-CR2. Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I) recognizes 5'... GCANNNNNNTGT ... 3', and Moraxella catarrhalis S subunit (S.Mca353ORF290P) recognizes 5'... CAAGNNNNNNTGT ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	8.8939e-75
NZ_CP042813.1\|WP_002697041.1\|3076298_3077489_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379330	pfam13679, Methyltransf_32, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.69416e-43
NZ_CP042813.1\|WP_148879283.1\|3064377_3067407_-\|HsdR-family-type-I-site-specific-deoxyribonuclease	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP042813.1\|WP_148879288.1\|3081167_3081962_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	7.77701e-73
NZ_CP042813.1\|WP_148883975.1\|3077764_3080884_-\|cell-division-protein-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	2.3653e-161
NZ_CP042813.1\|WP_002696999.1\|3058252_3058858_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.73786e-63
NZ_CP042813.1\|WP_024752058.1\|3090682_3091750_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|184456	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB.	1.24036e-156
NZ_CP042813.1\|WP_002697051.1\|3082699_3083965_-\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP042813.1\|WP_024752069.1\|3061081_3062659_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|237608	PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP042813.1\|WP_024752071.1\|3058838_3059957_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.64004e-30
NZ_CP042813.1\|WP_024752067.1\|3070696_3072277_-\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|211578	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). [DNA metabolism, Restriction/modification].	0
NZ_CP042813.1\|WP_024752063.1\|3075222_3076302_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	1.65975e-178
NZ_CP042813.1\|WP_024752057.1\|3092372_3093407_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|178323	PLN02721, PLN02721, threonine aldolase.	8.86382e-121

>NZ_CP042813.1|WP_024752065.1|3072760_3073105_+|hypothetical-protein
MVNCPPLPNSKRCFKASTQKCKIEAFKLAGLFLPRTAKLRTGTDARGSTQTVWFLTWTSKIRTAMDGSGSKQKRRFKAKVFVKLTGFSITMVNCPPLRRVGLFFIKFFPLYYIN
>NZ_CP042813.1|WP_024752067.1|3070696_3072277_-|type-I-restriction-modification-system-subunit-M
MANNTNGSNGMVQRAELHRKIWAIADEVRGAVDGWDFKQYILGILFYRFISENMMEFFNSAEHEAGDPEFDYAKISDKEAEKDFRPNTVEAKGFFILPSQLFKNVVKTARKNENLNTDLANIFKSIESSAVGFKSENDIKGLFEDVDTTSNRLGGTVAEKNSRLADILIGISEINFGNFQDNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTISKLLARLVMDGKTNVNKVYDPTCGSGSLLLQMKKQFEEHIIDEGFFGQEINMTNFNLARMNMFLHNVNYNNFSIKRGDTLLNPLHNNEKPFDAIVSNPPYSIKWIGDDDPTLINDARFAPAGKLAPKSYADYAFIMHSLSYLSSKGRAAIVCFPGIFYRKGAELTIRKYLVDNNFIDCIIQLPENLFFGTSIATCVLVMAKNKTENKTLFIDAGKEFKKETNNNILEDKNIEKIVAEFRDRTNIEYFSRLVDNSEIAENDYNLSVSTYVEKEDTREIIDIKVLNKEIEETVRRIDELRASINEIVKELEDE
>NZ_CP042813.1|WP_148879285.1|3069684_3070704_-|virulence-RhuM-family-protein
MSDRNEFKFLIYSSDAENAFVNVLVKDETIWLTQKSMAELFDCTSDNISLHLKNIYRDGELNEAATIEEFSVVQTEGKRQINRKTKFYNLDAIISVGYRVNSAKATKFRIWATSILKEYMIKGFALDDERLKQGKTLFSKDFFKELLERVRSIRASERRIWQQITDIFAECSIDYDKQSDVTKDFYATVQNKFHYAITGQTAAEIIYSSVDKDKEHMGLQTWKNSPDGRILKSDVGVAKNYLQEKQIRQLERAVVGYFDYIEDLIERENTFTMEEFAKSVNEFLEFRKYDILKDNGKVSRKQAKEKAESEYEIFNKTQKINSDFDEQIKKMLKDEKNDE
>NZ_CP042813.1|WP_148883963.1|3068113_3069382_-|restriction-endonuclease-subunit-S
MSKIDELLKNEKVEWKELGEVVKILDSQRKPISKDKREAGNYPYYGANGILDYVNDYIFDGVFLLMGEDGSVINKDKSPVLHWAEGKIWVNNHAHVLAENKEIVLLRFVYFFLTTTDVSTIVRGTPPKINQQSLRSIQIPIPSLETQEKIVKILDQFTNYVTELQVKLRTELQARTKQYNYYRDMLLSEEYLNKLSEKIDLLEDKKEIVWDTIGNICTRQKGINITAGKMKELHKDGAPVRIFAGGSTFADIEIKDIGEENIIRKNSIIVKSRGNIDFEFYEKEFSHKNEMWSYSSKDDKELNIKFLYYYLKNNVKYFRDNAITGKLPQISIGVTDNYKIPKPHIFVQNQIVKVLDKFQELLTNTTGLLPEEISKRQKQYEYYRERLLTFNSKSDNTHTHTHTHTHTHTHTHTHTHTHTHTR
>NZ_CP042813.1|WP_039943393.1|3067434_3068079_-|restriction-endonuclease-subunit-S
MVGVELESKVEWKTLGEIGIFTNGFGMPKSMFDVNGEVGAIHYGHIYTKYNQFVLKPIVKISKENALKLKQVTHGDLVIARTSENIEDVMKTIVYLGNDNAVTGGHAAVYSHNQNPKYMSYVFNGASYFINQKNKLARGVKVIEISTTDMNKIKIPLPSIFVQEHVVSILDKFDALINNISEGLPKEIELRQKQYEYYREHLLNFPKSCNNEKS
>NZ_CP042813.1|WP_148879283.1|3064377_3067407_-|HsdR-family-type-I-site-specific-deoxyribonuclease
MSQEPVSYGVSTIAEMTNGIILAHYEKLSRVEESYQSEADLENKLIADLLSQGYKKFFANSPDDLYANLKTQIEKLNKVSFTADEWKRFLAEYLDPPNDGMIEKTRKIQGKDNHIYDFTFDDGHLKNIKIIDKKNIHNNFLQVTNQIQQSGTHNNRYDVTILVNGLPLVHIELKRRGVNLSEAFNQIHRYSKESFNAENSLYKYVQIFIISNGTYTRYFANTTARDKNNYEFTCEWADAKNKPIRDLEDFTATFFEKRTLLEVLTKYCVFDVNNTLLVMRPYQIAATERILWKIESSYRNKKYGKVDAGGFIWHTTGSGKTLTSFKTARLATQLDYIDKVFFVVDRKDLDFQTMKEYQNYQRDSVNGSKDTKKLKENIEKDDDKIVVTTIQKLNEFVKKNPNHAIYKKHCVIIYDECHRSQFGEAQKNITKSFKYYYQFGFTGTPIFPENTLGTDTTAGIFGAQLHSYVITDAIRDGKVLKFKVDYNNISAKFKNAETEQDEKILKNIEGKMLMHPERIAEVTKHILKVFDTKTHRNEQYNLKQRRLNGFNAMFAVQSIEAAKFYYDEFKKQQANIPEEKRLKIATIYSFAANEEQNAIGDIEEENFEPTAMDSSSKEFLDKVIADYNEYFKTNFSTDGKEFQNYYKDLSLRVQNKEVDILIVVGMFLTGFDAPMLNTLFVDKNLRYHGLIQAFSRTNRILNKVKTFGNIVCFRNLEQATKDAIKIFGDENSINIILEKSYNEYIYGFTDEETGKKIKGYIDLCHEIITKFPKPTEIETDADKKEFAKLFGELLQSENILKNFDEFENFEKIISDRQMQDMKSVYIEIRESLLQSKTGGGYTDNSKIDFSDIEFQIDLLKTDEINLDYILALILEKAKDLNDIETLKAEIRRAIRSSLGTRAKEELVIDFINETDLASLKTTEDILDAFYKYAKHKKELKIRELIKEENLKDGSIRFIEKSINKGYVETAGTDLDSLLPPISRKQGAREAKKKTVLQRIGDIVKVFIGI
>NZ_CP042813.1|WP_024752069.1|3061081_3062659_-|glucose-6-phosphate-isomerase
MKWNNFDTMQAYKELQAAAKVCVKKALSEAGAAKRIQSFTVPFAGFEYNYAAKQVDADILALLQKLADEQDVIGKFTALLNGEAVNTGENRKVLHHLARGQLGSDVLFNGKNMRSFYLGELEKMRRFADDVQSGKILSSTGKAFTDVVQIGIGGSDLGPRAMYLALEGWAKKHGKRTLKAHFISNVDPDDAAVVLSELNLETTLCILVSKSGTTLETLTNELFVKKFLQDAGLKPEKHMAVVTSETSPLANNPDYLASFYIDDFIGGRYSSTSACGGLILSLALGFKTFEAFLAGAAAADKAATEKDITKNAALLDALIGVYERNVLGYETTAVLPYSQALARFPAHLQQLDMESNGKSVNRFGEPVAYKTGPIIFGEPGTNGQHSFYQHLHQGKTIVPLQFIAFENNQTGKDIEVDGSSSQKKLLANVVAQIIAFACGKEDSNPNKVFEGERPSSLLYAKELTPEILGALLAHFENKVMFQGFIWNINSFDQEGVQLGKVLAKKVLANDMPESLKAYSDLLHIL
>NZ_CP042813.1|WP_024752070.1|3060457_3060889_-|hemerythrin-family-protein
MECSLNFKWKDSLSVGYNTIDLHHKKLLSLINDFADLLSLPQAKYKVHVGRVLMSLCDYTVYHFSEEEKIMRRYKYPQFEEHAQIHAAFVQRIKDSLVPLASGNMEAGAEFCNFLGEWLLHHIAVTDQKWAEFIQKNHPDAKF
>NZ_CP042813.1|WP_024752071.1|3058838_3059957_-|two-component-sensor-histidine-kinase
MLLFLENFLITFFCSLLLKENFPDAMGIEYFIIIFSACLWLYITDNKKWKILFLAGFIFSVFVVDATLCFFSPAFITIDLKLSNKKIKPASFEIPTDLVFKLIPISCIFFNFNILLFIFSLVVFFYSGIKENYFLTAAELTMLQDILSENKLHAEKQKRIFQIDLLKNAEVSILAERNRISGVLHNSIGHTLSSAILQVNALKYIADNEEVKDKLAVLQTSLETGMTEIRKSLHNIHDTSFNLQTALDKLIEKISNPKIKLIYKIDALPYVLKHDIISIIKEGIANTVKHSGATLMDIILLEHRGFYSVVINDNGCGFNSSVPIQEGIGLSVLREIVEKNNGTINFYSDGGFKIHIIFPKQIAEAENEHHNN
>NZ_CP042813.1|WP_002696999.1|3058252_3058858_-|response-regulator-transcription-factor
MNIIIIDDDPLVISSLTTILTANKFTISACGSDGEEAIQLFKKFKPDILLMDIRMEGVNGITASEKILKEYKDAKILLLTTFQDEEYITKALNFGCRGYILKQNIESLVPALNAIAAGSIVFDSQIMNKIPTKKPQKEKFFEDLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVYYYTK
>NZ_CP042813.1|WP_148879287.1|3074769_3075051_-|hypothetical-protein
MSSSEPPRTPVVPNSNDVLKQNYLQSFKTRKVSFCHGRQNSEPPRMAVVPNRSDVLKQSSLQSFKTRRFGFATDGKTKPLCRTLFIKNSTSAL
>NZ_CP042813.1|WP_024752063.1|3075222_3076302_-|tRNA-2-thiouridine(34)-synthase-MnmA
MKILVGLSGGVDSAVAAKLLLEQGHEVSSVTMQMISPVGEIIKSQEQDIADARAIANTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFGRLLDVALERGFDAIATGHYAQIMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGNYTKPEVRKIAEKAGLISAHRPDSQDICFVPNGDYAKIVEALLPETFTEGNFLDTKGKIIGKHRGLHHYTIGQRRGLALAFGEPVYVVSKDAKTNTVCVGSSENLFASALVAENVNFIAVEKLTEPIVCTVKTRYRQNEIPARLIPITEDSLRVEFLQPERAVAAGQALVCYKDGAVFAGGIITAVEPWAKPQ
>NZ_CP042813.1|WP_002697041.1|3076298_3077489_-|SAM-dependent-methyltransferase
MKETLSAQEAADFCFAQDFYLIGFSKSKKNTDVIKMRIRRVFVKNEKVFQLESYTKTQVFHKTLTQESLLAELANAFTLFGAATVEANEFRFFFFSNKRGAIRYTKKARKESDALPLTHDKKPNYLLPDSEPIAFLIAQGIMSTDGKVVKKMYPKFRQINKFLEFIHNVLPAFDENQKISILDFGCGKAYLSFALYHYLHVELRRAVQLVGLDLKEPVIKNANALAKRLDFAGLEFFCGDIANYKTESAPDMVICLHACNTATDYALAKAVQYGAKVIMAVPCCQHELFAQIKQTPLPKENPAAPLFEHGIIAERSAALLTDTMRATLLKAAGYKVQVMEFIDTEHTPKNILIRAIKKDSRNAEYEKTVRESYSALKKFFGVEPLLETLLRDEQLL
>NZ_CP042813.1|WP_148883975.1|3077764_3080884_-|cell-division-protein-FtsK
MLLLYASIILLIPGWNTQTAGILLGSPVFFLTAASGERLLYFVRPLVTITVVKDLVTASIIICIILFICVEMLLAIFFAEKIARRIKKAAEHDIVAETFEAPIPDTDFVESKKNLDNEISHEEKKSRASFLEESDQSATKENTDTVILDSPIDADTTADKSELRNTVSINTTQEETQENILNTFEKAIDSFELQRFDSSDRSAVIDTTGTAAGNVIGEFETVDIADITDSAEDFGSSDSIDEEHSDTDFSISENVEINEREESSEDAPIVISLIKENAIENAQRITVAEEAAMQENPITEKTLKGFTEDVQTKESAKPAAVPSFDPSDENNLFSDLHELNAELDKIVVEKQSAQKLESSEKGMLQKDEADFDYTPLPEPARQNTEEKIDEENNVRSTEERTALESAEAHSAAAFENPAMSDRKAEVTESKYIETDIAADSDESESGTEPLTDFEDTGTSAPENSEQAVREEAAAAAAEEEEEEEEEEEEEEAAEEEKTSSGEPQKKGLYQKLIEKEKRSAEEKKLAAQDVALLHTDMETASEIEEALAKNESSQDRGKALEEEKQKPLPKKKYAIPFDLLNNYPDGEYWVVDEGTKRSAIILKETFNEFKIQVKITGIKKGPVVTMFELLPPPGIKLSKITNLQDNIALRLAASSVRIVAPIPGKHAVGIEVPNKKRSIVSFRELIESDLPEAQKMAIPVVLGKDVTGDPQLLDLAQTPHLLIAGATGSGKSVCVNSIILSILYNRRPDEVKLILVDPKIVELKLYNDIGHLLTPVITEPKRAFQALQYCLCEMERRYALLDNMGCRDIRSYNAKIKEEHIATERLPYVVIIIDEFADLMATSGKELEATVARLCAMSRAVGIHVVLATQRPSIDVITGLIKANIPTRIAFMVASKTDSRIILDEMGADKLLGKGDMLYVSPVKPFPMRIQGTFVSEEEVERVVSCVKQFGEPEYIDDEIFVDDDDDDFTETLFPDDEDPLYDQALEIVLLAGKASASYIQRKLKIGYNRAARLVEEMEHRGIVGPANGSKPRDVLYHP
>NZ_CP042813.1|WP_148879288.1|3081167_3081962_-|undecaprenyl-diphosphate-phosphatase
MSFFEAILLGALQGLAEFLPISSSGHLQIAEHLIHLKEVPLLFDILLHLATLAAVCLVFYKTIARLFAVLGRFIIRKSKLEDKEDLQMIAALLIATVVTGVFGLLLKDWVKTLNIKVIPVCFIITGAVLFLSEKIQIKKNLAVPSLFGAFIIGLAQGIGVTPGISRSGSTISAALFTGLSRERAGEFSFLLSIPAILAAFILELKSADTLSVAVPPVSLIGGMLTAFVVGFFSLKFLLKLINGGKLGFFAYYLIPAGILLLIFL
>NZ_CP042813.1|WP_002697051.1|3082699_3083965_-|Glu/Leu/Phe/Val-dehydrogenase
MSKETLNPLANAQAQVKKACDALGADPAVYELLKEPQRMIEISIPVKMDDGSVKTFKGYRSAHNDAVGPYKGGIRFHPNVNSDEVKALSIWMSIKCQVTGIPYGGGKGGITVDPSELSQRELEQLSRGWVRGMYKYLGEKVDVPAPDVNTNGQIMAWMQDEYNKLTGEQTIGVFTGKPVTYGGSQGRTEATGFGVAVTMREACKVLGMDLKKSTVAVQGFGNVGKFTVKNIMKLGGKVVSVAEFDKKEGTYAIYKEGGFTFEELEESKTKHGGLLNVPGAKRLSLDEFWALDVDIIAPCALENAIKEHEANLIKAKLICEGANGPITLEADDILYKKGIVVTPDILTNAGGVTVSYFEWVQNLYGYYWTEKEVEEKEERAMVDAFKPIWELKKEKNVSFRQATYMKSIKRIAEAMKVRGWY
>NZ_CP042813.1|WP_002697062.1|3089992_3090331_-|hypothetical-protein
MKNDMKRNSSISTTMPKTKNRFPIRRKLLVVFGLLVAGSVFAVGLLALNIAQKAVIEKVETNLIEKAKDTAEIVDCKIDALFQLLESIASIPIFQDDSLTYDMKLEISEGAI
>NZ_CP042813.1|WP_024752058.1|3090682_3091750_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKKQRKIFALFINGLIILLTVGCIKIQSKEKNNVLQGEKNMIKNTSEIYFAGGCFWGVEGYFQRIPGIKTTITGYANGNTENTNYEEIAATDHAETVKIEYYPSIISLQELLAHYFRIIDPTSLNKQGNDVGRQYRTGIYYVDNTMLPEIKSFIEFMQKKYSQPIVIEIDALRNFIVAEEYHQNYLKKNPNGYCHIDLNLANRPLYDESRFTIPSKETLKNSLSKIQYEVTQEKATERPFTSEYDKLNKKGIYVDIVTGKPLFSSSDKYDAGCGWPSFTKPITTNALEYLQDKSLGMTRTEVLSKTGNSHLGHVFDDGPIDKGGLRYCINGASLLFIPYEEMAEKGYNDYLPYVK
>NZ_CP042813.1|WP_148879289.1|3091906_3092113_-|hypothetical-protein
MPRTAKSEPPRMAVALNRIEFENYHICIIGVFKLIGFILPRMAKLRTATDGGGSKQKRCFKARQFIKL
>NZ_CP042813.1|WP_024752057.1|3092372_3093407_+|low-specificity-L-threonine-aldolase
MKYIDLRSDTVTQPTQEMRTAMAEAEVGDDVYGDDPTVIKLETFAADLVGKEAALFVPSGTFGNQLALFTHCPRGSEVILDEECHIVQNEVGAPAIIAGVQLRTIDMQGKMLSGKEIEKRIRVRDNILHPKTSLICVETAHSNGNVFSIEELQDIRRCADRYKLPIHLDGARLFNAAVSLGVEANEITRYADSVMLCLSKGLCAPVGAMLAGSKEFIAEARKKRKIMGGGLRQAGILAAAGLIALRDMRGRLSEDHKHATALAQALKEIPQLEIAVDRLDINFVFFKHKEDCTLNPDALVDFMETKGILINSCSPQGWFRFATHYHIGMEEVEKIVNAMREFYA

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Crispr_ID: NZ_CP042813_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_13

3200106-3200216

Orphan

Consensus_repeat	Method
TTTAAAACATCGTTTCTGCTTGGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042813_13

>merge|NZ_CP042813|13|3200106-3200216|CRISPRCasFinder
TTTAAAACATCGTTTCTGCTTGGAACCACCGCCGTCCGTGGCTAAAACTAACTCACAAGTTTTAAAGCTTTGCAAATTACTTTGCTTTAAAACATCGTTTCTGTTTGGAAC

>NZ_CP042813|13|12|3200106-3200216|CRISPRCasFinder
TTTAAAACATCGTTTCTGCTTGGAAC	CACCGCCGTCCGTGGCTAAAACTAACTCACAAGTTTTAAAGCTTTGCAAATTACTTTGC
TTTAAAACATCGTTTCTGTTTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_148879309.1\|3198312_3198492_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002695010.1\|3194008_3195844_-\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP042813.1\|WP_044635053.1\|3196735_3197998_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176200
NZ_CP042813.1\|WP_044635051.1\|3187153_3187876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002694975.1\|3208676_3208934_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879310.1\|3198707_3199946_+\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|376358
NZ_CP042813.1\|WP_044635060.1\|3216603_3217272_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP042813.1\|WP_148883968.1\|3208969_3210625_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_052335724.1\|3185119_3185623_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148883967.1\|3203415_3204684_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179486
NZ_CP042813.1\|WP_148883969.1\|3214602_3216444_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP042813.1\|WP_024752715.1\|3210794_3213062_-\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP042813.1\|WP_044635056.1\|3205557_3208386_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP042813.1\|WP_052335727.1\|3185948_3187136_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042813.1\|WP_024752716.1\|3213987_3214545_-\|hemerythrin	unknown	unknown	gnl\|CDD\|226454
NZ_CP042813.1\|WP_024752709.1\|3195902_3196655_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP042813.1\|WP_044635052.1\|3192027_3193203_-\|RNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
NZ_CP042813.1\|WP_148879314.1\|3217802_3218042_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002694990.1\|3200506_3202960_-\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP042813.1\|WP_024752707.1\|3189844_3191677_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_002695010.1\|3194008_3195844_-\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP042813.1\|WP_044635053.1\|3196735_3197998_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176200	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_CP042813.1\|WP_024752715.1\|3210794_3213062_-\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	2.13506e-90
NZ_CP042813.1\|WP_044635060.1\|3216603_3217272_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.40149e-15
NZ_CP042813.1\|WP_044635056.1\|3205557_3208386_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP042813.1\|WP_052335727.1\|3185948_3187136_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.24757e-44
NZ_CP042813.1\|WP_148883969.1\|3214602_3216444_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP042813.1\|WP_148883967.1\|3203415_3204684_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179486	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP042813.1\|WP_148879310.1\|3198707_3199946_+\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	5.74603e-50
NZ_CP042813.1\|WP_024752716.1\|3213987_3214545_-\|hemerythrin	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	1.42239e-38
NZ_CP042813.1\|WP_024752709.1\|3195902_3196655_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.35301e-68
NZ_CP042813.1\|WP_044635052.1\|3192027_3193203_-\|RNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	3.30498e-73
NZ_CP042813.1\|WP_002694990.1\|3200506_3202960_-\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP042813.1\|WP_024752707.1\|3189844_3191677_-\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0

>NZ_CP042813.1|WP_148879310.1|3198707_3199946_+|class-II-aldolase/adducin-family-protein
MKEISAKEINESIRGLQSGNIAVNLQSIFIKTAENAFITVAPHSSEQEITASDLQKLNSKQLQRTNNTVFRIFSHHADISAVIACSPKFCAVAASCYKRIPPVLDDMAQIVGVYAEVVELEDQNRILRLFKKNHALIIKNNADGIGAIAAGRDLAQAAAAALILEKSAQVFIEAQYLGGAKALHWFNAKRMNHGYRTKYSKMNTNVRHLSERDYSRKIAADELELRAKIVEMGKQLVRENLMQGTWGNISVRLNNHQMLVTPSGIDYFSLSPYDIVLVDLESLEHEGSLKPTSEKLIHADSLKKNKDINCIIHTHPLHCGAYIAAHKPLIVTAPEIKSILKGNVAIADYAASGTKKLAENILRAIKENSACFMANHGLVVCGSSLEDALKKCRTIEAYARSELDKLLHTGNA
>NZ_CP042813.1|WP_148879309.1|3198312_3198492_-|hypothetical-protein
MVNCSPLLNSKRCLKASTLFCKIEAFKLAGLVFATDVKTVFKHSCGKFAHRCAVSNSFL
>NZ_CP042813.1|WP_044635053.1|3196735_3197998_-|zinc-binding-dehydrogenase
MKVKAVRLHGANDLRLDEFELPEITDDEILVKVVSDSVCMSTYKCAILGTEHKRVHPNVADHPAIMGHEMAGDIVKVGKNHQGKFKPGMKFTLQPALNYKGTMWSPGYSYEFFGGNATYCIIPAEVMELGCLLEYKGKAYYEASLAEPMSCSIGAINACYHTKMGVYIHEMGIKENGKLAILAGAGPMGLGAITYLLHRDVRPSMLVVTDIDQERLDRATELFPPAEYMAKGIELHFINTGKMDDPAEELIKITGGTGFDDVLCYAPVEAVIELSSAVLGRDGCLNFFAGPTDNKFTARINFYDVHYNSTHVLGTTGGNTDDMIESLELTAANRINPAVMVTHIGGLDAAADTILNLPNIPGGKKLIYNHLNMPLIALTDLRKKGAEDERYIKLADIVDAHKGLWCLEAEQYLLENFIDE
>NZ_CP042813.1|WP_024752709.1|3195902_3196655_-|DeoR/GlpR-transcriptional-regulator
MEERRNKIITFVNEHGNITFNELKENFPHVSEMTLRTDLKVLDKEQRLVRIHGGARSLDKVVGNDDFLKKRFIQNTKAKKIIAKKALEFIESNTTIFLDSGSTTTMLAHILEDKPNIFVTSGLTCAIEIARLERAKVVLSGGNINRHSLSVNGIEGIRYIEKINFDIAFIGVTRYSKETSFTCESLEDAELKQTVIKKSRKVIVLMDSSKINQRGTYTICNHNEVDIVISDNELPEALKHEFRNRGIAVY
>NZ_CP042813.1|WP_002695010.1|3194008_3195844_-|PTS-mannitol-transporter-subunit-IICBA
MKATLQKFGKQLSAMVMPNIGAFIAWGFITALFIPDGWIPNEQLASIQPYMLAYLLPVLIAATGGKMVAGERGLVMGAIAVVGCIAGAGGVDGKPMLMAAMIVGPFAGWVIKQFDAFMENRMPVGFEMLINNFSIGIIGMLISFIGFYLIGPFMTGVLAVLTAGVNVLLKYSLLPFVAIFIEPAKVLFLNNAINHGMFTPIGVEQAAQTGKSIMYMLETNPGPGLGVLLAYWLFAKDKATKDSAPGAIIIHFFGGIHEIYFPYILMNPFIIIAPILGNLAAISFYLIFGAGLKGPASPGSIIAFLSMAPKGSTVIALLGVVIAAGISFLIASPIVKLTSTKDLEKAKKKVKTLKAQSKGEVDRIKKIVFACDAGMGSSAMGATKFKNRIKASRPDIIVTNTSVDNIPGDSDVVVVQAVLAERAQKSAPQAKLITIENFLADSALDDLFFELSTGDAMVSKNTENKKTETPALKDVITIDGILLNQKAKTKEEAIRAAGKLLHKLDYVEEAYIDSMLEREKIATTYMGMGLAIPHGTTHGTETIKKSGIVVLQYPDGVDFDGELAYFVIGIAGIGGSHMDVLSKVCTALEDESVLEKMRNTNDKEWVLQQLS
>NZ_CP042813.1|WP_044635052.1|3192027_3193203_-|RNA-splicing-ligase-RtcB
MKNYKIFAESIEEEAKRQVEELSRQEFAKNSKIRIMPDVHAGKGCVIGTTMTIEDKICPNLVGVDIGCGISVFELGKIEPINFHKLDKVIRENIPSGSAIRKDERISKELKERLSTLTCANKINLEREYFSCGSLGGGNHFIEVNKDEIGNIYLAIHSGSRHLGTAVANYHQRKAIELLTSQNKAHKELIAKLKSERREKDIAAELVALPKQTHIPNELAFLSGEHTKNYLHDMTITQSFASENRKIIGEIILEKMNLEANDSWESIHNYVDIENKILRKGATPAYKGQKVIIPMNMRDGSLLCIGKGNAEWNFSAPHGAGRLMSRSAARSKLSFDTFKKEMSGVFSTSVSVCTLDEAPMAYKPMESILRQIKDTVHVTAIIKPLYNFKAP
>NZ_CP042813.1|WP_024752707.1|3189844_3191677_-|oligoendopeptidase-F
MKSTTPKRADIAKENQWKLELLFESEQAWQSALQEAIKSGERVLLYKDTFENPAEVESATLLNCLQAFETFEKQSEKLGQYAFLKKSEDEGNSENIARLSQYIMAMTEISAKLSWFVPALMQIPEDKVRAWIDPSGAEGKAFADYKIFIEKTLYLKVHTLSDREEKMLTLLSESGGTAQRSFSVLTNVDLQFGSITDRGEEKELTQSSFSQFLLSPDRAVREKAYKQFYAGFDAHKNTIASLYIGQVQQNTAMAKIRGYGSARENALYPDKVPVSVYDNLIKSVRDNLEPLHRFYALVQKTLKVEELRHYDVYVPLVAEIRKHTEYTEAVDIITEALQPLGGEYVNTIRSGLLGGWVDRYENQGKRSGAFSSGGFESEPYILMNYKPDVIRDVFTLAHEGGHSMHSWYSVRNNPFLCHDYTIFEAEVASTFNEELLFRSMVKKASDPKERAYLLSIRASDILATLYRQTMFAEFEMITHQLVESGTPLTLDRLRAEYKKLLTAYFGPAMHFEEVSDLECLRIPHFYRAFYVYKYATGISASLALAERVLSGGETERNDYFNFLKSGGSRYPIEALKVAGVDMASPEPVRAACNHFGEIVTELEKALKTIL
>NZ_CP042813.1|WP_044635051.1|3187153_3187876_-|hypothetical-protein
MSSKKEYADFPLDPHKKKMLAVNIKTLFRILTFTTLVFLIASLDMIFAVRAAKTKLLSAWMQEKNLMAASEELRQSSEDLTRLCRVFAANEARKYEDEYLAILNWRNGKTARPAKAANSLYAGKTISQYDVFKELGCTKDELALLTAATKLSDVLALREAQAMETIKQKKYVSGPAAIFDGERYDDFAVRILHDEEYHNQVTKIMQLIDEFCMLLADRTHAVISATNRMADTYLFLTVVL
>NZ_CP042813.1|WP_052335727.1|3185948_3187136_-|methyl-accepting-chemotaxis-protein
MIFFIWFLTTAVIHPILKSSDVFSYLGTGDLRKELEVKSNNEIGRMSGSFNTMLSNIKKLIFSIQKNANNLLNLGEELASNMTETAAAVHQISANIEGVKHQTMTQAASVTETAATIEEIVRIIRQLNKSIENQSASVAESSSSIEQMVMNIQEITKFIGHANETIEGLNTATAEGKESVSVANTISQKITEESGSLLDASSVIQHIASQTNLLAMNAAIEAAHAGDSGKGFAVVADEIRKLAEESNSQGKAITATLKTLSSEIETLANSAKNSEEKFNTIFELSERVQEISNNLISKMQEQEIGSREVLKAIQDINGVTVEVKNGSTEMLLGGESVAQEMQKLDSLTRIISDSMNEMASGAVQIDKAVREVNEITQKNKQSIADLTTEVEKFKV
>NZ_CP042813.1|WP_052335724.1|3185119_3185623_-|hypothetical-protein
MVRASGKKRQDDLDFCFISLWISFNAIYADDLNEIGDRSAVTGFLKKLSDLDTDKLLYALVWDTFFDNIRILLNNQYSFQPFWDEYNKPKTTTANSWEERFESEKKKVTKAMGTQNTAHLLTIVFRRLYTLRNQIIHGGATYNSSTNQSQKKKLADFCLLLFLQLLT
>NZ_CP042813.1|WP_002694990.1|3200506_3202960_-|glycogen/starch/alpha-glucan-phosphorylase
MNLTKEELQNSVIRKLKRNFSKDISQASQRELYDALASTIAEQLQTNWMATRKLHAKEKIRQMYYFSAEFLMGRALSNNLINSGLKQIVVDLLNELPFGEYTDIEEEEPDAGLGNGGLGRLAACFLDSLATLDYPGHGYGIRYRYGMFEQRIENGEQVEYPDKWLAFRDPWEVRHAELAVKVYFGGQSVCRQGDDGRLYYSLEGAEEIIATPYDMPIVGYDTKTINTLRLWEASSRDGFDLQLFNNMEYAAAVAKENAAEDISRVLYPNDSGPSGKTLRLKQQYFFSSASLQDILRSFVHKHGNDFSKFPEYTVIQLNDTHPVVAIPELMRLLIDEYYLDWDVAWEIVTKTFAYTNHTILSEALEKWPIEIFQTLLPRVYQIVEEINRRFLTLLREKYQGNWQKQNEMSIIGGGKIRMAWLAIVGSFSVNGVAALHTEILKTKELADWYNLYPEKFNNKTNGVTQRRWLLSANPSLAEFITKHIGTDWILNLSELKKLEPLADNEDALKELIAIKHSNKKRLADYLKKTQSIVISPDSIFDVQIKRLHEYKRQLLNILYVMTEYNKIIENPNYEPFPKTIIFGAKAASGYRRAKMIIKLINTVADRVNNDHRVKGRLQVVFVENYRVSAAEKIFPAADVSEQISTAGKEASGTGNMKFMMNGAITLGTMDGANIEIVEEAGAHNAFIFGLTSEQIAEINQKNHYSPHEYLNKNPALAKAVNQLIDGTYTAPHENTFRELHDSLLYGVEGQRPDVYYVLADFDSYAKAHKDIEEVYRDPIKWARMCMLNIARSGKFSSDRTIEDYVQDIWKLKKIHID
>NZ_CP042813.1|WP_148883967.1|3203415_3204684_-|glucose-1-phosphate-adenylyltransferase
MSKVLSIILGGGKGTRLYPLTKERSKPAVPFGGKHRIVDIPISNCINSGFRNIYLLTQFNSASLHLHIAKAYIFDSFSNGFVEILAAEQTFDHSGWYEGTADAVRKNFTHFKTQKPSHYLILSGDQLYRMNLKDFLQKHEESGSDITIACTPVNRSDASGFGIMQIDKNSRITSFMEKPGATKNIDEWKIPENSKLGSFGEKEYLASMGIYIFNTEAMEGSLANNMTDFGKEIIPMAIQKYKVSAYVHTGYWEDIGTIRSFYEATLDLTEIKPQFDFYDAVMPIYTHNRNLPPSKINAETLDNATCSEGCVITSATIKHSVIGIRSIIESGSILEGVVCMGADYYETEAEKEEKRKKGTPCIGIGSNCRIKKAIIDKNACIGNNVSIGMGEVPPDGDYDYYHIVDRIYVITKNAIIPDGTII
>NZ_CP042813.1|WP_044635056.1|3205557_3208386_+|DNA-polymerase-I
MKDDVVFILDAYGLIYRSYFAFVGKPLTNSTGKNISAVFGFFKSLYTILRDYEPQFFAVAMDSRVPTFRHEMYSEYKATRDKTPEDLHAQIPIIEEILTALGITLVRKDGFEADDVIASIAKCASADNKKAVIISSDKDLMQLIDDKITMLKPNKADAWIAFNADDVKEQWGVPPNQMLDFLSLIGDTADNVPGVKSIGPKTAAKLLDEYGSLDGIYAHTNSLKGAMQKKIIEGKENAYFSKKLIALEDSALEKCVLSDFACPVLDYAAAAKIFLREELPSLARQYAPNADFVKTDEAFLVRSADPKKEKKQGANSAGANPITTSPLQEIASASGGFKKNAGNYRGITEPEELRKLIDAAIAQGFAAFDCETTGLNPLEAELAGFSLALKAEEAFYIPVKLLPAELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQTIAYKDVVPKGKIFSDVPYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKEIIVHEREIFDIVGHEFNIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHVIPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAGLIFGVPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQEMESVVKLLVPLRVNIESGKTWGDFH
>NZ_CP042813.1|WP_002694975.1|3208676_3208934_+|hypothetical-protein
MGTPSLFQILKNVLFSPEVLFVTVIIILYLNLVFYVVYYRKTHSKINRRIHKMRMAAKNTKQTAQVEEKEETETEPPKKRAATVR
>NZ_CP042813.1|WP_148883968.1|3208969_3210625_-|hypothetical-protein
MSVIKFSIKNKKLCISMDTGMSSRSFAQSRQKDCFSEKGFILRDARVIPFQFEKTELGIRNGKESVFLTAELSLPELEYEESVNVQTLYANILQHLYEKNTDNLISKSDIQAVQNVLEIFSRILFAKEEISELFLTELAAAGTQSIAFLKETIILLPPITTKNCLMAQPKAEKLDYLSAVHPFAEKVLLKESFGFLIAGTLYYLLCGNSAYGKGIKNENTLFENMLDSFFDPPNTLIQNISQNDSDLLSFFLKVKKNKKEKENLVAFFGRLFSLPERLEKNQENLLQDREAFYLQRERILQQQQKSIQKKRFLRKHRTKLTVGFFAFLTLSLIFASIIYKQNSAPDTKGLTSLQVVEGFYTAVAELNQEISSAYATRNGGGKYESLMMNLYVIKKTREGYEQRKIYFTPQELAVLCDKIKEKQPSASFEEFCHAVKKIMQLGSVYGITDLKITVKEENPSQTVFDVLFFYWLPTPSDAQSKLSAEDPFSPKLEEFGFPVQVYHKHDTVCLQLYKDRWLISSIDSQERLVAEDGKNILKAFFKESEKADYLP
>NZ_CP042813.1|WP_024752715.1|3210794_3213062_-|glycoside-hydrolase-family-2-protein
MSRTIIPLWNNWLFKKDFNNSDIRKDIATDDFTPVGIPHMVQEIPYNYFDERNYQCISCYRREFAVDESMRGSRVFIDFEGVMAAATVYINEKEVGTHKGGYTPFSFDITDYVLYSKSGAADNLLVVEVDSTERADIPPFGFAIDYLTYGGIYREVCLRFVPEVYIKDVFFQPLDSDKLEKKLLANIEFENTGAENKDITYSLVLKDMQDTIIAAVTNSCIAAAGTSFQRAVLTDLQDIQVWDIENPQLYRAELCIVSDTSRDEDIISATVGFRTAEFTPEGFFLNGKQIKIRGLNRHQAYPYVGYAMPKRAQQDDADILKHELGINLVRTSHYPQSKHFLNRCDEIGLLVFEEIPGWQHIGDEAWQDVACKNVEEMILRDRNHASIVLWGVRINESPDSHNFYLRTNEIARRLDPTRQTAGVRCHANSDFLEDVYTMNDFICGSVQPDTLRDRALRPQREITGQADLVPYMVTEFAGHMYPTKRFDQEERLVEHATKHLMVQNTAALNPHICGAIGWCAFDYNTHYNFGSGDRICYHGVMDMFRIPKFAAAVYASQMPPSKKAILEPLTRYTIGERSIGGIAPLMICTNCDSVRVVIGEQDLGLFYPSKERFAGLEHPPIIISQIEGVWGGGWLDAAFIGYVNEKEVAIKRFACNPTAVDLAVHSDHTELSAYEPDTTRITVKLTDRFGNELSFSDAIIKVQLEGPAEIIGPKEFALIGGVRAFWIKTKFESGTVTVNVASEGFKTKQITIQVT
>NZ_CP042813.1|WP_024752716.1|3213987_3214545_-|hemerythrin
MDSIELMVKEHENILKFISVIRKACCRILEGSPVPVEDFTAMISFARTYADTHHHGKEEEILFHNMIEHIGQPATGLIQHGMLVEHDMGRFFISRLEEALTRYAADPNTENKLDIIMYSAGWADLLTRHIEKENKVAYVFARRELPPEVLHNIDKKVQVFEQEAAHRNVQEKSLQLLKDLTAKYC
>NZ_CP042813.1|WP_148883969.1|3214602_3216444_-|hydroxylamine-reductase
MENKMFCFQCQETAGGKGCTLSGVCGKKPDTAAMQDLLMYVTKGLSVVTTQLRAERKTVAADVNHTVTQNLFITITNANFDNEAIITQIQSTLKLKEALLSQIEKKESLPEAALWNEDVSTFAKKAVDVGVLHTKNEDIRSLRELITYGLKGLSAYSKHANALLHDNDEVDAFIQQALTKTLDDSLTVEDLVALTLETGKYGVEGMALLDKANTSTYGNPEMTKVNIGVGKNPGILISGHDLRDMEMLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQKEEFESFNGPILMTTNCIVPPKESYKDRLYTTGAAGYPGCKHIAGDIGEEKDFSPLIEQAKRCPPPTEIESGEIIGGFAHHQVFALADKIVDAVKSGAIKKFIVMGGCDGRAKARNYYTEFAKALPKDTVILTAGCAKYKYNKLDLGDIGGIPRVLDAGQCNDSYSLAIIALKLKEVFGLDDINKLPIIYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVENFGIAGIGTVEDDMQLFFGNDEAKPAISADMLIGSIVRKFPEAVPVLIAQGMHCLGCPSAQTETLANACLVHGLESESVVKALNKSLH
>NZ_CP042813.1|WP_044635060.1|3216603_3217272_+|Crp/Fnr-family-transcriptional-regulator
MDFFMLSNTILFRGITPEEIKNVLLCLGGKQKHFTKEETVYRAGEQVSALGIVLSGSVIIENNDVWGNKTVLDKLGIGKVFAETYACSEKETLMVDVVATEDTDILFLQTKPLLTLCPQTCAYHTKVIRNLVSLLAQKNLHLSHRMFYVSSKSIRGRLLSYLSHQAAQNSSWEFTIPFNRQELADYLQVDRSALSNEISKMQKEGFFTVNKNQFSITLKEFF
>NZ_CP042813.1|WP_148879314.1|3217802_3218042_-|hypothetical-protein
MFQKDYKDKRSQAIQGKINRLEQFFLAEYIQPKLNGRRSDKRGTYNKKLDQIIVKKAEKEKRKIGLDDITLDDFEKYKP

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Crispr_ID: NZ_CP042813_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042813_14

3286051-3286332

Orphan

Consensus_repeat	Method
ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP042813_14

>merge|NZ_CP042813|14|3286051-3286332|PILER-CR
ACGGACGCCCGTGATTCCAAGCAGCAACGATGTTTTAAAGCAAAACTATTTGCAAAGCTTTAAAACTCGCAAGGTTTGGTTTTGCCAAGGACGGCAAAACTCAGAACGGGCACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTTTAAAACTCGCAAGGTTTGGTTTTGCCACGGACGGCAAAACTCAGAACGGGCACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT

>NZ_CP042813|14|2|3286051-3286332|PILER-CR
ACGGACGCCCGTGATTCCAAGCAGCAACGATGTTTTAAAGCAAAACTATTTGCAAAGCTT	TAAAACTCGCAAGGTTTGGTTTTGCCAAGGACGGCAAAACTCAGAACGGGC
ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT	TAAAACTCGCAAGGTTTGGTTTTGCCACGGACGGCAAAACTCAGAACGGGC
ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042813.1\|WP_024752877.1\|3299511_3300393_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
NZ_CP042813.1\|WP_024752875.1\|3297648_3298656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879325.1\|3290413_3290596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_081718756.1\|3276710_3277214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP042813.1\|WP_002700657.1\|3284796_3285528_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|372554
NZ_CP042813.1\|WP_024752759.1\|3286493_3288275_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_148879324.1\|3288293_3290144_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP042813.1\|WP_002700663.1\|3279302_3280466_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP042813.1\|WP_024752761.1\|3291290_3291905_-\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP042813.1\|WP_024752876.1\|3298667_3299345_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_024752874.1\|3295457_3297656_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237354
NZ_CP042813.1\|WP_148879322.1\|3277167_3279228_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446
NZ_CP042813.1\|WP_002700661.1\|3281805_3282360_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP042813.1\|WP_024752755.1\|3282356_3283055_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP042813.1\|WP_002700654.1\|3285565_3285784_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042813.1\|WP_002700644.1\|3290879_3291281_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|131417
NZ_CP042813.1\|WP_052335732.1\|3283048_3284656_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP042813.1\|WP_002700640.1\|3291925_3292918_-\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP042813.1\|WP_024752753.1\|3281182_3281800_+\|MptD-family-putative-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|370580
NZ_CP042813.1\|WP_002700668.1\|3275871_3276714_-\|FAD-binding-domain-in-molybdopterin-dehydrogenase	unknown	unknown	gnl\|CDD\|366378

Protein	Function_ID	Function_description	E-value
NZ_CP042813.1\|WP_024752761.1\|3291290_3291905_-\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.41833e-86
NZ_CP042813.1\|WP_081718756.1\|3276710_3277214_-\|hypothetical-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	3.65345e-47
NZ_CP042813.1\|WP_002700661.1\|3281805_3282360_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	6.75385e-23
NZ_CP042813.1\|WP_148879324.1\|3288293_3290144_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	8.00939e-61
NZ_CP042813.1\|WP_002700663.1\|3279302_3280466_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	6.66971e-144
NZ_CP042813.1\|WP_002700657.1\|3284796_3285528_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	7.65837e-22
NZ_CP042813.1\|WP_024752877.1\|3299511_3300393_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	1.09041e-138
NZ_CP042813.1\|WP_148879322.1\|3277167_3279228_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	3.02782e-39
NZ_CP042813.1\|WP_024752755.1\|3282356_3283055_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	3.38388e-15
NZ_CP042813.1\|WP_002700668.1\|3275871_3276714_-\|FAD-binding-domain-in-molybdopterin-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	5.96053e-34
NZ_CP042813.1\|WP_002700644.1\|3290879_3291281_-\|diguanylate-cyclase	gnl\|CDD\|131417	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to.	8.32044e-34
NZ_CP042813.1\|WP_024752874.1\|3295457_3297656_-\|AAA-family-ATPase	gnl\|CDD\|237354	PRK13341, PRK13341, AAA family ATPase.	0
NZ_CP042813.1\|WP_002700640.1\|3291925_3292918_-\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP042813.1\|WP_024752753.1\|3281182_3281800_+\|MptD-family-putative-ECF-transporter-S-component	gnl\|CDD\|370580	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.	6.02694e-48
NZ_CP042813.1\|WP_052335732.1\|3283048_3284656_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	2.36425e-87

>NZ_CP042813.1|WP_002700654.1|3285565_3285784_+|hypothetical-protein
MKTMMKKAAVIAMTVFLLLAICTSCNSSREPDTVILTVKTNRNVKEIAEIKLNVKKVVTNLILGNWSLQAKL
>NZ_CP042813.1|WP_002700657.1|3284796_3285528_+|leucine-rich-repeat-domain-containing-protein
MIKKAAVIAMTVFLLLGGSFGFAQKSSTDGNFETDGKGLITGYKGTPPVKLVIPDKIGKEKIIGIGKNAFRGAESIQELKLPKTLVLIDNYAFILCRNIKSLDLSRCGKLEKIGDGAFSDCNGIGMLALPANLAEMGEEVFAYCESIPDINLSKCTELKTIAIRAFFGCTNAIITLPKSIEAIGEDAFGNEMYMDSSNNAEDSESNSEGKVYNYTCKEVRVPKAKVSLVTEEPCNFGGKVTPY
>NZ_CP042813.1|WP_052335732.1|3283048_3284656_+|ABC-transporter-ATP-binding-protein
MVEKDKAEKIVEIRNVSFQYENGVQDAAVINNVSLQVERGECILLTGISGCGKTTILRLMNGLIPHYHAGSFSGEIKICGENVSDKPIYEISKKASTVLQNPKSQFFNLDTTSEIVFFLENMGTPFEKMHERLTEVSNFLGIKHLLDRSIFQLSGGEKQMIAIASALASDTDILLFDEPTSNLDVSYIEKIAAVLKRLKEAGKTLIISEHRLYFLKDVIDRALIIKDGKIAQTFSANEFSSLTEDERKQLLLRPINFESNVFCKPKNHKTETFENGSDEGSEKNLNDKNTELCTELYIKNLRYRFPKEKINTIEIENLKLEFGKVIALAGKSGQGKTTFAHCLAGLTKGNKDAVFFSDKTCTSKTSESKKLSSKKLSAKKRLTFSYIVMQDVGYQLFTESVADELELGKNKTDSSIDIEQILSALCLTELKDRHPLSLSGGQKQRVSIGAAVSSGARILIFDEPTSGMDYFHMKETAELINSIRSPEKLILIISHDFEFLSLVADELLLMEDGKIISQNPFTESEAEKTFEYLKA
>NZ_CP042813.1|WP_024752755.1|3282356_3283055_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKKIVLDPRTKLFLTFCMGLSITVMVPLYVEVLNMLLLAFLFFTNGQVKSAIKLMLFFLILVCLSFLPVTNGFVSNVIFQITFMIRRFMLPIVAGKYLIDSTPVGLLMSALEKLKLPQSLVITISVMLRFFPTLSEEYTHIKNAMKMRGIGLNASHVIQKPLLMLEYVMVPLLASASRIGDELAASAHIKGVDAGCEKVRYKSAKFSSADVFISMYIVAGFVLVIGTRVGLW
>NZ_CP042813.1|WP_002700661.1|3281805_3282360_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MQKNHLPLLGVGPLYVISIILITAAGGLFTCLGIIAGGKIPLIVPCVIAGICFIGIGIALWIAAVFFSKIDANIIANKLVTDGVYRIVRNPIYSAFLFVCTGVLLLFCNWYLLLLPPIFFLYLTLLMKYTEEKWLLQQYGEEYQDYCKRVNRCIPSVRGLLHGGNKGFGNKNAGNTGNPMEEHK
>NZ_CP042813.1|WP_024752753.1|3281182_3281800_+|MptD-family-putative-ECF-transporter-S-component
MEETNLQNNKPVEKTGLVLKDFVNIGIFTVIYFVALFIVGTPLGILVVTYFAYPFTASLVLGILGMFLLAKIQKPFGLFIFAALPGVLTTVLGHTPVVAIHSLIVAAIAELVRKFLGYKTIKGSIAGYAIMSLWFVGPFWQIFILKDQYYALTEKMMGTEYAIQLTSLPIWVIPMLYVTSCIGGILGGLLGAKVLKKHFQKAGLV
>NZ_CP042813.1|WP_002700663.1|3279302_3280466_-|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MKNRTVPFFKPSFTTEEEEAVCRVLRSGWLTTAKEALDFEKEFADFVGAKHALAVNSATSGLLLSMHAAGITAGTKILTSPYTFISTATTALHLGGGIVYADIEPDSYNISPEQIEEKLKRDPQIKAIVPIHIAGNVCNMREINRLAKQYGVAVIEDAAHSFPSKTAQGYAGTLGTLGVFSFYATKTITTGEGGMVCTNDDALAKRISVLRSHGINRTIWDRYTDSKASWVYDVSDLGWKCNLPDILAAIGRVQLRKAESFFQKRKAIAEQFNKAFSQYDFLQTPPDGDGNAWHLYLLRLVPEKISVTREAFAQALQEKGLGISVHFIPHFEFTYIKEQLGVQAKDFPQAAAKYANTITLPFWPDMSDEDIAYVIDTVIQTGKEFAR
>NZ_CP042813.1|WP_148879322.1|3277167_3279228_-|molybdopterin-dependent-oxidoreductase
MKKFVSDIHFENEYFSLLIRSPIAEGVLLGIDVPELPENCFFYSAKDVPGINKIEVFGSSIPIFAGPELNYKGESIGILVGNNLKTLYDVSKQFVIRAQSTPTEEFEKPIDFFDYPKFAHESRSYNNADGILDSADTIIYSSTVFEPQYHYFAELPIVKACPGNKTLSVYASSQWAAHVKKSVSEALKMPEKNIDFFSQAEGEALDGKIWFPSLMAAQVAVAAWLSGKPVSLGLSLKEYYAFAPKTPKIIIQHKTALSKNNEIEAMRTFILIEAGAYSPLIKIMISQMLAAANADYFIPAHTIEAIAVKSNDGMTDIFNGWGGAYVNNALEKHINEICSQLNVMPDEWRLKNMQHAAVKQYQNAKASAASVFSDLLKTVCQNSDFYRKYNVYNFLNSKREKRDPHAWRGTGIAIGFQYNGVQAIIDEGFTYAVEITLDTNSKIYVKTDTISETMQKILKKDIAKKLSVEENTIVFEEKEASAASLMTASAEIIIIPDLIDKCVKTIQGQRFRKPLPITVQKRYRKPRRAKTKDQAKDESFLSKTPAACAIELEMDPVCQDIQVKGVWLACMPGALYSKRAALTEIHKNIITALSKVNSEIIRKKTGVMQNNSIINAKDIPPIHIYLLESQSKPLGTNMIAEGIIHAAYLSALSQVLINTENHLIIAPSLTSNADNNEPLEETENEN
>NZ_CP042813.1|WP_081718756.1|3276710_3277214_-|hypothetical-protein
MLTTTSRWRKRKMRINFKLNGTEIQMDANPHERLSDVLRREFNILSVKESYPYGENGSSTIILDGKAVPACMVPIFLAANTEIITLEYFQTQNEYKEIINAFKQAGVSLCGYCNTGKILTIYTLLQQNAYPSEEEIKDALSGIVCRCTCMDDIISAVKRIKPQRKKR
>NZ_CP042813.1|WP_002700668.1|3275871_3276714_-|FAD-binding-domain-in-molybdopterin-dehydrogenase
MKNMDKTSTIYLPRTMAELQSIIKNISNIHAIGGGTEFLRKQYRKNLYFPERIAVLKNIPELKSISKTERTIDFGAAASLQSIVDLGEKNIPQALYEALIYCANPAIRNLATIGGNIAKLRPQSSTLAVLASLDAKIEIRTAAETLWLPIIRFADPKFTDLRSKNHIITKIRISSEPWDYVFYKRIGGTVISKNSASFIFLVRLQKNIIYEMRLIFSNNKFIKNKEFNNLFIGRTVPISERDITVLIEKCTEFFPENTFQNNYLKNCFFNLIEDCLYKLI
>NZ_CP042813.1|WP_024752759.1|3286493_3288275_+|hypothetical-protein
MKKKLVCFFVAVFAMILLYGASPKDEAHKRLYQKEIDEALQNEVPADSIGDWYEALQTTMCMLIRRTELYRGDMRCIISNAPQARCAVYPDGTIVFTTGLLDYADTVLFQAVMSTPRLARNFNSERERFIAPILADALARFAFHFERPSVYAVHAPAVQEYSDRLTQALLQLAGYSPSLFVTWLERLQDIQTDSYNAEFFSSFYEQQNIPDRLTALHTSSVFFLAEDLSDILFALQTNIGTADAVQTIQGLVKRFPHNIYFERLQALALHKAWLNSLSVKDLELAHFLPLACNDAKTLRSLYENLAAAGKNAQMKFKTTTRKAVAGSRGYYDAAVNAYQTYLADMPEYGMQSAYARLLFESSEKAALALRLAKNAAGFEKDSDSLTARANFATMLYYSGTSYTEALAIMQKLNAQSGSTNSREQMEVSMPKETDMRLISYNYAQMLLGLGETVKAEKIREEMKAMLYPKTQGQPFVLRNIKLKDNTDKLLEHWGKPSSIIYNFAVERWVYANLNVQVYLSTYDSVEQIFGIAVERESPVSLPGDVRTGDTRASFEAFYGKPVYHCADKDVYFFNGNTLAVLYCENIIQTVTLE
>NZ_CP042813.1|WP_148879324.1|3288293_3290144_+|RNB-domain-containing-ribonuclease
MKKGNPVLYKNRPALIIDEQADKFEIETENGTKRVREKDMNLLHAGTVNSLKELLSAPLPSGNIEDALEFFEVESESFFEFAELVWGEYPASAAWAVWDATLSNPLFVCTAPNEPVKIRSKEELEALTKKQNEKNAAEELKRQFVLALKKALQGKEIAVFDCETYAPFLQEIEALALGKTEQSKYLKEAKIAETPESAHTVLLKTGFWTAQKNPYPARFDHSLYSSKIDIPPLKRAENITDLSGIPAFAIDNEGSTDPDDAISFDGKYLWIHVANPADTIEPDTKSDIDARGRGATLYAPEGASRMLGEKAIEYFALGLTPFSCALSFKIGINNEGEIISVSIERTKIAVTRMTYRQAEEKKDDAALKPLFEIARRNTERRHAAGAVSIEMPEVYISVDKDKTVHIREAQKFESMDMVREMMLLAGEAAARFAFKNAIPFQYISQPFPELPKKLPEGLAGEYKKRRAMKPRNVGTIPSIHAALGIALYSQVTSPLRRYGDLVCHQQLLRFIDGKPLMPADDLVLRIGAADAATRNAILAERCSKKHWTLVYLLDNPDKIFRAIVLETVGNKAHIIIPALAYEADITVKEPLELNAEISVKAAKIFLPKLEAHFIHV
>NZ_CP042813.1|WP_148879325.1|3290413_3290596_+|hypothetical-protein
MVPNRIEFENYHSILGVFKLTGIILPRTAKTELPRMAVVPNRNDVLKQNACKALKLVVWF
>NZ_CP042813.1|WP_002700644.1|3290879_3291281_-|diguanylate-cyclase
MVGIVVVSHSKNLADEIITLAREMKQNDFPLLNGSGIDGEHFGSDPMIIKETIEKAYLDGGVIIFVDLGSSILNTEMAIDFIDEAAFDTSKIKIADAPIVEGLIAAVPINDEKATAEDILTEMEDFKNFSKVK
>NZ_CP042813.1|WP_024752761.1|3291290_3291905_-|dihydroxyacetone-kinase-subunit-L
MKPYEILSKVIDVIAENKEYLTELDRAIGDSDHGVNLDRGFQKIKSELTAYENMNLAEMANKIAMTLISNVGGASGALYGTAFMKAGMFLKTQTEINDVVIAEALNQMIAGIKSRGKAERGEKTMLDTLIPVYEFVKAAADKGDSLLDTADEIAEIAKKSMEATKDIKATKGRASYLGERSIGHIDPGAYSSYLIIKTICENIR
>NZ_CP042813.1|WP_002700640.1|3291925_3292918_-|dihydroxyacetone-kinase-subunit-DhaK
MKKLINAPENILQEMVGGLVKAHGDLVKNIADLPVIVRKNKADKVCLVSGGGSGHEPSHAGFVGEGMLDAAVAGEIFTSPSADKVYEAIKAVDSGKGVLLIIKNYSGDVMNFEMAAEMAEMEGIKVAKVIVNDDIAVENSTYTVGRRGIAGTVLVHKILGAAAEKGYSLEELVALGNKLIPNIKTMGMALKPATLLSTGKLSFDISDDEVEIGLGIHGEPGTHKEKINTADYFAELLLTKILDEHTLSANSEVAVLVNGLGDTTLIELYILNNKIQQMLAAKNIQVVDTLVGNYMTSLDMGGFSITLLKLDQETKDFLKAKANTIAFKRF
>NZ_CP042813.1|WP_024752874.1|3295457_3297656_-|AAA-family-ATPase
MNKDLFASAQGGHEPLAARMRPRNLDEYIGQEHIVGKGRLLRRAIQADRLSSVIFFGPPGTGKTTLARVIANHTKSNFLSLNAVLAGVQQIREAISKAEENKQLYDRRTILFVDEVHRWNRAQQDALLPWVENGTIIFIGATTENPFFEVNKALVSRSRVFQLTVLTDSDLAKAAERALTDTELGYGKWRIQFEEGALEHLIATASGDARSLLNALELAVETSVPDWPPPTGAEILIDMQTAEESIQQKAVLYDRDGDYHYDVISAFIKSIRGSDPDAAMYWLARMVAAGEDPRFIFRRMLISACEDIGLADPHALTVVVSAAQAFDRVGLPEGRYHLTHAALYLATCPKSNTAFAFFDALAKVEKENAEIPNHLKDANRDSEELGHGKGYLYPHAYKDHWIAQQYLPDNLSGIVFYQPSDQGYEKQIQERVLMQREAQIAALTERSEKNDFQSTFDQDDWKVRTEASTAKMLETIRDKLFTLAELQANSRVLIYPADDNLLIWTAMRKASDGCTAGICVQQQGYDILTQYAQTLDELSRPSFALLRSETSISQLFPDLSFDMLLSYNPFKTVNEMKVFFELLRTADSNLEKILFSVKLPQSGLRLSSLLLENKNLFAGQTELLCSFAAAEKAFYENPSNELFNWTDKTITALAQKMNFHILQETIEYTETRLISQKSIERWFAPDSAYGAAIPKQPGVDIQKILPLIETLCKKPLQFKTEIAFFMIKMSDE
>NZ_CP042813.1|WP_024752875.1|3297648_3298656_-|hypothetical-protein
MKMKKFLAIIILSIITIATFSCKNPPIFAAIEQEIKLKPASMRGIVRSIAAYGSTLYTSDGELYTKKLGEKGKWEKTSEFKKITGLASDGNTVYVAIVDKGVFTVAGIPIQGSEKIQTVFGDNKSAAYGVEKKGSNSKVYKISGNTLDSTGMEIEGAIKAATKDYLISTKGAYKAGSALTGTPVKLQDGVQVNADLFVLTLEKLYAYNSGTQKWASVEHTVPGAACMTYWEDKNILLIGGASGYGEVQLDSSDLTDLTKSKVYKSAGMFDGSSTPKEHVLQYNNMLGKWTITNIAIFPISDPNRYVVYAGVGDPSTRYSGLWGFYNPEQLEWNRE
>NZ_CP042813.1|WP_024752876.1|3298667_3299345_-|hypothetical-protein
MKRIFFVLIVWFLCFTNLFSEEISEQETTVQTEPADDTANKKDSSALDKKDEKPESIAVYEPIRKGDQYMKLGITVGFPLFNTSPEKFAVNPKIHPGGGFFLGYAYYLTKGFSLGGEVEFQFYPTLGKNLYFSVPIVFNIGYTFAKNRLRFPLSFGIGGNFQACNATKYFAMLFKPAVGFYYQYLPEWSFGGDIAWNVIPQWYKEKKYNRTGNFLTISIGARYHF
>NZ_CP042813.1|WP_024752877.1|3299511_3300393_+|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase
MGTKIIDGFSYAAELRTELKNKVSELKAQGITPALATILVGNDPASLSYISSRHKVFQETGMADKLYTLSATATEEELLSLIYSLNDDAAIHGILVQFPLPSQMRRETIIQAIKPDKDVDGFHPLNCGKLFLGYPVYIPCTAHGVLYLLEKEEIKTEGAQVVILGRTGFVGKPLSALLSEKPYNATVTLCHSKTRDLPKLCLQADILITAIGKPHYITADMVKEGAVVIDIGINRVPAENAKGYKITGDVDFENVAPKTSAITPVPRGVGPMTVTMLLSNTLQAACRQHGLSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042813_6	6.1\|1712580\|55\|NZ_CP042813\|CRISPRCasFinder	1712580-1712634	55	NZ_CP042813.1	1702204-1702258	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	220512-220566	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1248435-1248489	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1264636-1264690	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2133341-2133395	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2220106-2220160	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2220260-2220314	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2522384-2522438	0	1.0
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2746124-2746178	0	1.0
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	1650859-1650914	0	1.0
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	1650963-1651018	0	1.0
NZ_CP042813_14	14.2\|3286222\|51\|NZ_CP042813\|PILER-CR	3286222-3286272	51	NZ_CP042813.1	658523-658573	0	1.0
NZ_CP042813_1	1.1\|342262\|44\|NZ_CP042813\|CRISPRCasFinder	342262-342305	44	NZ_CP042813.1	231569-231612	1	0.977
NZ_CP042813_1	1.1\|342262\|44\|NZ_CP042813\|CRISPRCasFinder	342262-342305	44	NZ_CP042813.1	231859-231902	1	0.977
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1573487-1573541	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2020303-2020357	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2215352-2215406	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2692669-2692723	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2703357-2703411	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	3116296-3116350	1	0.982
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	3164531-3164585	1	0.982
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	2754241-2754296	1	0.982
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	443734-443789	1	0.982
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	1141477-1141532	1	0.982
NZ_CP042813_12	12.1\|3073614\|17\|NZ_CP042813\|PILER-CR	3073614-3073630	17	NZ_CP042813.1	3073740-3073756	1	0.941
NZ_CP042813_14	14.1\|3286111\|51\|NZ_CP042813\|PILER-CR	3286111-3286161	51	NZ_CP042813.1	658523-658573	1	0.98
NZ_CP042813_2	2.1\|352377\|58\|NZ_CP042813\|CRISPRCasFinder	352377-352434	58	NZ_CP042813.1	2630428-2630485	2	0.966
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	840075-840129	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1164530-1164584	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1264241-1264295	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1264438-1264492	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	1666675-1666729	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	2698205-2698259	2	0.964
NZ_CP042813_7	7.1\|2132736\|55\|NZ_CP042813\|CRISPRCasFinder	2132736-2132790	55	NZ_CP042813.1	3235881-3235935	2	0.964
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	1427678-1427733	2	0.964
NZ_CP042813_9	9.1\|2271864\|56\|NZ_CP042813\|CRISPRCasFinder	2271864-2271919	56	NZ_CP042813.1	3057665-3057720	2	0.964
NZ_CP042813_14	14.2\|3286222\|51\|NZ_CP042813\|PILER-CR	3286222-3286272	51	NZ_CP042813.1	1542067-1542117	2	0.961

1. spacer 6.1|1712580|55|NZ_CP042813|CRISPRCasFinder matches to position: 1702204-1702258, mismatch: 0, identity: 1.0

agcttgacacaacacaacggcgagtaaacttaccataggcaaaaactaaacccga	CRISPR spacer
agcttgacacaacacaacggcgagtaaacttaccataggcaaaaactaaacccga	Protospacer
*******************************************************

2. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 220512-220566, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

3. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1248435-1248489, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

4. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1264636-1264690, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

5. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2133341-2133395, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

6. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2220106-2220160, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

7. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2220260-2220314, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

8. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2522384-2522438, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

9. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2746124-2746178, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

10. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 1650859-1650914, mismatch: 0, identity: 1.0

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	Protospacer
********************************************************

11. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 1650963-1651018, mismatch: 0, identity: 1.0

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	Protospacer
********************************************************

12. spacer 14.2|3286222|51|NZ_CP042813|PILER-CR matches to position: 658523-658573, mismatch: 0, identity: 1.0

taaaactcgcaaggtttggttttgccacggacggcaaaactcagaacgggc	CRISPR spacer
taaaactcgcaaggtttggttttgccacggacggcaaaactcagaacgggc	Protospacer
***************************************************

13. spacer 1.1|342262|44|NZ_CP042813|CRISPRCasFinder matches to position: 231569-231612, mismatch: 1, identity: 0.977

cagaaccgccacggatggcggtggttccaagcagacggtttagt	CRISPR spacer
cagaaccgccacggacggcggtggttccaagcagacggtttagt	Protospacer
***************.****************************

14. spacer 1.1|342262|44|NZ_CP042813|CRISPRCasFinder matches to position: 231859-231902, mismatch: 1, identity: 0.977

cagaaccgccacggatggcggtggttccaagcagacggtttagt	CRISPR spacer
cagaaccgccacggacggcggtggttccaagcagacggtttagt	Protospacer
***************.****************************

15. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1573487-1573541, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

16. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2020303-2020357, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

17. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2215352-2215406, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

18. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2692669-2692723, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaagcaga	Protospacer
************************************************* *****

19. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2703357-2703411, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccatgcaga	Protospacer
*************************************************.*****

20. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 3116296-3116350, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

21. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 3164531-3164585, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

22. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 2754241-2754296, mismatch: 1, identity: 0.982

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttgtaaaattgaagctttt	Protospacer
***************************************.****************

23. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 443734-443789, mismatch: 1, identity: 0.982

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttgtaaaattgaagctttt	Protospacer
***************************************.****************

24. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 1141477-1141532, mismatch: 1, identity: 0.982

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttgtaaaattgaagctttt	Protospacer
***************************************.****************

25. spacer 12.1|3073614|17|NZ_CP042813|PILER-CR matches to position: 3073740-3073756, mismatch: 1, identity: 0.941

gcaagcttactcaaacc	CRISPR spacer
gcaagcttacttaaacc	Protospacer
***********.*****

26. spacer 14.1|3286111|51|NZ_CP042813|PILER-CR matches to position: 658523-658573, mismatch: 1, identity: 0.98

taaaactcgcaaggtttggttttgccaaggacggcaaaactcagaacgggc	CRISPR spacer
taaaactcgcaaggtttggttttgccacggacggcaaaactcagaacgggc	Protospacer
*************************** ***********************

27. spacer 2.1|352377|58|NZ_CP042813|CRISPRCasFinder matches to position: 2630428-2630485, mismatch: 2, identity: 0.966

cagcgatgttttaaaagcacaaattttttccaagtgctcttaaaactcgtggtttagt	CRISPR spacer
cagcgatgttttaaaagcacaaactttttccaagtgcttttaaaactcgtggtttagt	Protospacer
***********************.**************.*******************

28. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 840075-840129, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaagactaaaaatcaggacgtggcggtggttccacgcaga	Protospacer
****************** *************.**********************

29. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1164530-1164584, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccaagcaga	Protospacer
******************************* ***************** *****

30. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1264241-1264295, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

31. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1264438-1264492, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

32. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 1666675-1666729, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cattgatttaatcaagaatactaaaaatcagggcgtggcggtggttccatgcaga	Protospacer
**.**********************************************.*****

33. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 2698205-2698259, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggtggtggttccatgcaga	Protospacer
**************************************.**********.*****

34. spacer 7.1|2132736|55|NZ_CP042813|CRISPRCasFinder matches to position: 3235881-3235935, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaacactaaaaatcagggcgtggcggtggttccaagcaga	Protospacer
******************.****************************** *****

35. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 1427678-1427733, mismatch: 2, identity: 0.964

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattccaaacgatgtttaaaagcatcaacactgttttgtaaaattgaagctttt	Protospacer
*******.*******************************.****************

36. spacer 9.1|2271864|56|NZ_CP042813|CRISPRCasFinder matches to position: 3057665-3057720, mismatch: 2, identity: 0.964

tcaattctaaacgatgtttaaaagcatcaacactgttttataaaattgaagctttt	CRISPR spacer
tcaattctaaacgatgtttaaaagcatcaacactgttttgcaaaattgaagctttt	Protospacer
***************************************..***************

37. spacer 14.2|3286222|51|NZ_CP042813|PILER-CR matches to position: 1542067-1542117, mismatch: 2, identity: 0.961

taaaactcgcaaggtttggttttgccacggacggcaaaactcagaacgggc	CRISPR spacer
taaaactcgcaaggttaagttttgccacggacggcaaaactcagaacgggc	Protospacer
**************** .*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042813_10	10.1\|2370215\|26\|NZ_CP042813\|CRISPRCasFinder	2370215-2370240	26	LR597641	Escherichia phage mEp460_ev081 genome assembly, chromosome: 1	29973-29998	5	0.808

1. spacer 10.1|2370215|26|NZ_CP042813|CRISPRCasFinder matches to LR597641 (Escherichia phage mEp460_ev081 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.808

tggatctttcacctctggttttttca	CRISPR spacer
atcatctttcccctctggtttattca	Protospacer
   ******* ********** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78986 : 142514

Bacillus_phage(30.0%)

tail,transposase,tRNA,integrase

attL 70945:70965|attR 149081:149101

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
70945:70965	attL	NA	NA	NA	NA
WP_148878524.1\|78986_80180_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_002701287.1\|80566_80929_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_024752848.1\|80928_81552_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_002701291.1\|81556_82921_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_002701293.1\|83070_83358_+	HPF/RaiA family ribosome-associated protein	NA	NA	NA	NA
WP_044634779.1\|83877_86280_-	VWA domain-containing protein	NA	NA	NA	NA
WP_024752851.1\|86313_88995_-	transcription elongation factor GreA	A0A248SJQ8	Salicola_phage	1.3e-07	27.1
WP_024752852.1\|89012_89960_-	hypothetical protein	NA	NA	NA	NA
WP_039943662.1\|90564_92967_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_002701312.1\|93374_94388_-	ketopantoate reductase family protein	NA	NA	NA	NA
WP_148878525.1\|94689_94809_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002701318.1\|95198_95897_+	hypothetical protein	NA	NA	NA	NA
WP_148878526.1\|96041_96254_+	hypothetical protein	NA	NA	NA	NA
WP_002701322.1\|96500_97127_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_148878527.1\|97119_98487_+	MATE family efflux transporter	NA	NA	NA	NA
WP_039915987.1\|98560_98902_+	hypothetical protein	NA	NA	NA	NA
WP_039915994.1\|99093_100482_+	MATE family efflux transporter	NA	NA	NA	NA
WP_148878528.1\|100740_101637_-	hypothetical protein	NA	NA	NA	NA
WP_148879394.1\|101705_103229_-	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	8.0e-07	42.3
WP_024752858.1\|103718_104894_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_024752859.1\|104894_107984_+	exonuclease subunit SbcC	NA	NA	NA	NA
WP_148878529.1\|108665_109541_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-32	35.4
WP_148878530.1\|110520_111396_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.8e-33	35.4
WP_024752891.1\|111380_111698_-\|transposase	transposase	NA	NA	NA	NA
WP_148878531.1\|111813_113805_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-05	41.2
WP_148878532.1\|114195_114882_-	site-specific DNA-methyltransferase	A0A1P8CMS8	Staphylococcus_phage	3.4e-34	35.2
WP_024751679.1\|115081_115366_-	hypothetical protein	NA	NA	NA	NA
WP_024751770.1\|115651_115837_-	hypothetical protein	NA	NA	NA	NA
WP_148878533.1\|117259_118510_-	DUF935 family protein	NA	NA	NA	NA
WP_002696334.1\|118506_120033_-	hypothetical protein	A0A0N7AEF1	Bacillus_phage	9.0e-51	29.1
WP_002696333.1\|120029_120566_-	DUF3486 family protein	NA	NA	NA	NA
WP_024751680.1\|120581_120872_-	hypothetical protein	NA	NA	NA	NA
WP_044634729.1\|120898_121297_-	hypothetical protein	NA	NA	NA	NA
WP_148878534.1\|121301_121598_-	hypothetical protein	NA	NA	NA	NA
WP_148878535.1\|121560_121923_-	hypothetical protein	NA	NA	NA	NA
WP_024751776.1\|121906_122242_-	hypothetical protein	NA	NA	NA	NA
WP_024751777.1\|122265_122820_-	N-acetylmuramoyl-L-alanine amidase	A0A0B5CTW5	Listeria_phage	1.4e-22	35.3
WP_081718572.1\|122936_123161_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024751675.1\|123339_123786_-	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.2e-08	32.8
WP_002696309.1\|123865_124378_-	bacteriophage Mu Gam like protein	NA	NA	NA	NA
WP_148878536.1\|124419_124614_-	hypothetical protein	NA	NA	NA	NA
WP_148878537.1\|124618_125326_-	hypothetical protein	NA	NA	NA	NA
WP_148878538.1\|125328_126264_-	AAA family ATPase	NA	NA	NA	NA
WP_148878539.1\|126275_128156_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_148878540.1\|128152_128494_-	transcriptional regulator	NA	NA	NA	NA
WP_148878541.1\|128688_129276_+	hypothetical protein	NA	NA	NA	NA
WP_148883877.1\|129384_129831_-	hypothetical protein	NA	NA	NA	NA
WP_148878543.1\|129836_130277_-	hypothetical protein	NA	NA	NA	NA
WP_148878544.1\|130819_131680_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002695871.1\|131861_132152_+	hypothetical protein	NA	NA	NA	NA
WP_148878545.1\|132138_132699_+	hypothetical protein	NA	NA	NA	NA
WP_148878546.1\|132751_133090_-	DUF4325 domain-containing protein	NA	NA	NA	NA
WP_002695879.1\|134215_134563_+	hypothetical protein	NA	NA	NA	NA
WP_039943637.1\|134612_135608_+	hypothetical protein	NA	NA	NA	NA
WP_024752645.1\|135669_136128_+	hypothetical protein	NA	NA	NA	NA
WP_081718589.1\|136124_136739_+	phage morphogenesis protein	NA	NA	NA	NA
WP_024752646.1\|136728_137178_+	hypothetical protein	NA	NA	NA	NA
WP_148878547.1\|137203_138055_+	hypothetical protein	NA	NA	NA	NA
WP_148878548.1\|138755_142514_+\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	1.2e-27	32.5
149081:149101	attR	NA	NA	NA	NA

DBSCAN-SWA_2

257047 : 308206

Cronobacter_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024753077.1\|257047_259519_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.0e-120	37.6
WP_002697999.1\|259555_260041_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_024753074.1\|261068_262442_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_002698671.1\|262510_263500_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_024753073.1\|263795_264752_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	3.9e-36	32.4
WP_039943739.1\|265552_265957_-	hypothetical protein	NA	NA	NA	NA
WP_002698660.1\|265953_267075_-	ABC transporter	NA	NA	NA	NA
WP_024753071.1\|267075_268116_-	ABC transporter	NA	NA	NA	NA
WP_024753070.1\|268116_269697_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	27.3
WP_002698654.1\|269817_271059_-	DUF3798 domain-containing protein	NA	NA	NA	NA
WP_044634678.1\|272222_273416_+	F420-0--gamma-glutamyl ligase	NA	NA	NA	NA
WP_081718784.1\|273526_273775_+	hypothetical protein	NA	NA	NA	NA
WP_002700292.1\|274131_274743_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_024753068.1\|274795_275944_+	S-methyl-5-thioribose kinase	NA	NA	NA	NA
WP_044634679.1\|276090_278514_+	hypothetical protein	NA	NA	NA	NA
WP_024753066.1\|279122_279917_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_002700284.1\|279909_280488_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_148878572.1\|280727_281060_+	hypothetical protein	NA	NA	NA	NA
WP_148879396.1\|281172_282477_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_148878573.1\|282785_283289_-	hypothetical protein	NA	NA	NA	NA
WP_148883879.1\|283329_285540_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-07	50.0
WP_024752166.1\|287099_288881_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	9.0e-111	37.3
WP_039943445.1\|288994_289723_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_148878575.1\|290027_291104_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_044634523.1\|291662_292745_-	6-phosphofructokinase	NA	NA	NA	NA
WP_148878576.1\|292767_294855_+	hypothetical protein	NA	NA	NA	NA
WP_024753023.1\|294910_295534_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.8e-29	40.1
WP_024753022.1\|295533_297180_-	iron ABC transporter permease	NA	NA	NA	NA
WP_002699542.1\|297194_298214_-	thiamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002699538.1\|298684_299650_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024753019.1\|299680_300709_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_024753018.1\|300759_301809_-	hypothetical protein	NA	NA	NA	NA
WP_024753017.1\|302018_302633_+	hypothetical protein	NA	NA	NA	NA
WP_002699530.1\|302673_302955_+	hypothetical protein	NA	NA	NA	NA
WP_148879397.1\|303039_303216_-	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_024753016.1\|303212_303650_-	hypothetical protein	NA	NA	NA	NA
WP_148878577.1\|303816_305070_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_002696721.1\|305194_305395_-	hypothetical protein	NA	NA	NA	NA
WP_024753013.1\|305512_305737_+	hypothetical protein	NA	NA	NA	NA
WP_148878578.1\|305889_306519_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_148878579.1\|306466_306589_-\|transposase	transposase	NA	NA	NA	NA
WP_024751992.1\|307189_308206_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.0e-23	30.3

DBSCAN-SWA_3

316998 : 387749

Lactobacillus_phage(12.5%)

tRNA,protease,transposase,integrase

attL 317740:317786|attR 318663:318709

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024752184.1\|316998_317280_+\|transposase	transposase	NA	NA	NA	NA
WP_047170260.1\|317391_317739_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	4.3e-09	43.4
317740:317786	attL	NA	NA	NA	NA
WP_024753009.1\|317921_318203_+\|transposase	transposase	NA	NA	NA	NA
WP_047170259.1\|318314_318662_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	5.6e-09	43.4
WP_024753008.1\|319253_320546_+	extracellular solute-binding protein	NA	NA	NA	NA
318663:318709	attR	NA	NA	NA	NA
WP_002695388.1\|320978_322109_-	chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	2.2e-06	34.9
WP_002695389.1\|322251_323064_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_002695391.1\|323311_323767_-	DUF192 domain-containing protein	NA	NA	NA	NA
WP_002695393.1\|323741_324335_-	hypothetical protein	NA	NA	NA	NA
WP_024753007.1\|324343_325591_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_002695397.1\|325651_326614_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_024753006.1\|326721_328182_+\|tRNA	cysteine--tRNA ligase	A0A0U2SJ70	Niemeyer_virus	8.9e-40	27.9
WP_024753005.1\|328337_328880_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_024753004.1\|328863_329577_+	hypothetical protein	NA	NA	NA	NA
WP_024753003.1\|329587_331273_+	hypothetical protein	NA	NA	NA	NA
WP_002695411.1\|331613_332300_+	UMP kinase	NA	NA	NA	NA
WP_148878581.1\|332296_332827_+	DnaJ domain-containing protein	A0A0G2YAM9	Acanthamoeba_polyphaga_mimivirus	4.4e-13	46.2
WP_024753001.1\|332832_333051_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_024753000.1\|333204_333567_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_148878582.1\|333595_334960_-	response regulator	A0A1V0SGX0	Hokovirus	4.0e-34	27.2
WP_148878583.1\|335035_335551_-	hypothetical protein	NA	NA	NA	NA
WP_024752998.1\|335553_337422_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_024752997.1\|337421_338429_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_024752996.1\|339044_339812_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_024752995.1\|339815_341222_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_148878584.1\|342381_343887_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-59	34.1
WP_148878585.1\|344708_345311_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_044634938.1\|345349_347065_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.8e-35	24.8
WP_044634937.1\|347064_348795_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.2e-28	26.6
WP_148883880.1\|352247_352433_+	hypothetical protein	NA	NA	NA	NA
WP_024752213.1\|352685_353924_-	OmpA family protein	NA	NA	NA	NA
WP_148883881.1\|354688_355441_-	ATP-binding cassette domain-containing protein	A7K9T9	Acanthocystis_turfacea_chlorella_virus	1.2e-08	28.3
WP_024752211.1\|355437_356481_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_002698061.1\|356477_357482_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.8e-60	37.1
WP_148878587.1\|359343_359856_-	hypothetical protein	NA	NA	NA	NA
WP_148879198.1\|359864_360590_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024752208.1\|360967_362773_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	1.2e-22	44.8
WP_024752207.1\|362786_364493_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	3.4e-14	27.5
WP_024752206.1\|364479_366516_-	hypothetical protein	NA	NA	NA	NA
WP_002696680.1\|366582_367941_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	4.7e-11	22.8
WP_002696682.1\|368000_368636_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_002696684.1\|368948_369224_-	septation regulator SpoVG	I3PV82	Clostridium_phage	7.8e-06	41.7
WP_024752205.1\|369282_370155_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_024752922.1\|371625_374748_-	alpha-mannosidase	NA	NA	NA	NA
WP_024752923.1\|375607_376360_+	hypothetical protein	NA	NA	NA	NA
WP_148878591.1\|376352_377201_+	hypothetical protein	NA	NA	NA	NA
WP_002700754.1\|377227_377917_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-19	32.5
WP_081718773.1\|377913_379131_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_002700756.1\|379132_379861_+	hypothetical protein	NA	NA	NA	NA
WP_044634994.1\|379890_380931_+	hypothetical protein	NA	NA	NA	NA
WP_024752927.1\|380917_381991_+	hypothetical protein	NA	NA	NA	NA
WP_044634993.1\|382323_383988_-	alkaline phosphatase	NA	NA	NA	NA
WP_024752929.1\|384321_384939_+	hypothetical protein	NA	NA	NA	NA
WP_081718774.1\|385097_385319_+	hypothetical protein	NA	NA	NA	NA
WP_148883882.1\|385309_385507_-	hypothetical protein	NA	NA	NA	NA
WP_148878595.1\|386627_387749_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

DBSCAN-SWA_4

491655 : 554769

Exiguobacterium_phage(25.0%)

protease,tail,transposase,integrase

attL 495376:495391|attR 554793:554808

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148878613.1\|491655_492909_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_148878614.1\|493076_493541_-	cupin domain-containing protein	NA	NA	NA	NA
WP_148878615.1\|493816_494329_-	hypothetical protein	NA	NA	NA	NA
WP_148878616.1\|494370_494565_-	hypothetical protein	NA	NA	NA	NA
WP_148878617.1\|494569_495271_-	hypothetical protein	NA	NA	NA	NA
WP_148878618.1\|495273_496209_-	AAA family ATPase	NA	NA	NA	NA
495376:495391	attL	NA	NA	NA	NA
WP_148878619.1\|496220_498101_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_148878620.1\|498097_498439_-	transcriptional regulator	NA	NA	NA	NA
WP_148878621.1\|498634_499018_+	hypothetical protein	NA	NA	NA	NA
WP_148878622.1\|499485_500382_+	hypothetical protein	NA	NA	NA	NA
WP_002695879.1\|500408_500756_+	hypothetical protein	NA	NA	NA	NA
WP_039943637.1\|500805_501801_+	hypothetical protein	NA	NA	NA	NA
WP_024752645.1\|501862_502321_+	hypothetical protein	NA	NA	NA	NA
WP_082048222.1\|502317_502932_+	phage morphogenesis protein	NA	NA	NA	NA
WP_024751790.1\|502921_503371_+	hypothetical protein	NA	NA	NA	NA
WP_024752647.1\|503397_504249_+	hypothetical protein	NA	NA	NA	NA
WP_148878623.1\|504330_504717_+	hypothetical protein	NA	NA	NA	NA
WP_148878624.1\|504948_508707_+\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	1.2e-27	32.5
WP_002695900.1\|508732_509170_+	hypothetical protein	NA	NA	NA	NA
WP_148878625.1\|509203_509782_+	hypothetical protein	NA	NA	NA	NA
WP_082048223.1\|509899_512176_+	hypothetical protein	NA	NA	NA	NA
WP_148878626.1\|512205_513570_+	hypothetical protein	NA	NA	NA	NA
WP_024751798.1\|513573_514128_-	hypothetical protein	NA	NA	NA	NA
WP_024752241.1\|515687_516974_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_024752242.1\|517095_519231_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-07	30.5
WP_002699748.1\|519296_519965_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_002699750.1\|519968_521219_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_024752243.1\|521252_522782_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.4e-67	45.9
WP_024752244.1\|522970_523468_-	cell division protein DedD	A7KUY9	Bacillus_phage	3.5e-28	47.0
WP_148883887.1\|523860_524196_-	hypothetical protein	NA	NA	NA	NA
WP_148883888.1\|524192_525197_-	hypothetical protein	NA	NA	NA	NA
WP_148878627.1\|525201_527850_-	hypothetical protein	NA	NA	NA	NA
WP_148879399.1\|528200_529229_+	KamA family radical SAM protein	NA	NA	NA	NA
WP_024752248.1\|529414_530239_+	RNA polymerase sigma factor RpoD/SigA	M4SMP8	Cyanophage	2.1e-22	30.6
WP_024752249.1\|530257_531298_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_002699771.1\|531343_532276_-	ABC transporter permease	NA	NA	NA	NA
WP_002699773.1\|532272_533148_-	ABC transporter permease	NA	NA	NA	NA
WP_148878628.1\|533144_534272_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.1e-29	35.1
WP_148878629.1\|534604_535438_-	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	1.7e-27	32.7
WP_024751798.1\|535546_536101_+	hypothetical protein	NA	NA	NA	NA
WP_148878549.1\|536104_537406_-	hypothetical protein	NA	NA	NA	NA
WP_082048223.1\|537435_539712_-	hypothetical protein	NA	NA	NA	NA
WP_024751795.1\|539829_540408_-	hypothetical protein	NA	NA	NA	NA
WP_024751794.1\|540441_540879_-	hypothetical protein	NA	NA	NA	NA
WP_148878632.1\|540903_544662_-\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	2.0e-27	32.5
WP_024751792.1\|544893_545280_-	hypothetical protein	NA	NA	NA	NA
WP_024752647.1\|545357_546209_-	hypothetical protein	NA	NA	NA	NA
WP_024751790.1\|546235_546685_-	hypothetical protein	NA	NA	NA	NA
WP_148878633.1\|546674_547289_-	phage morphogenesis protein	NA	NA	NA	NA
WP_024752645.1\|547285_547744_-	hypothetical protein	NA	NA	NA	NA
WP_039943637.1\|547805_548801_-	hypothetical protein	NA	NA	NA	NA
WP_002695879.1\|548850_549198_-	hypothetical protein	NA	NA	NA	NA
WP_148878622.1\|549224_550121_-	hypothetical protein	NA	NA	NA	NA
WP_148878634.1\|550319_550766_+	hypothetical protein	NA	NA	NA	NA
WP_148878635.1\|550771_551149_+	hypothetical protein	NA	NA	NA	NA
WP_148878636.1\|551220_551517_+	hypothetical protein	NA	NA	NA	NA
WP_148878637.1\|551767_552355_-	hypothetical protein	NA	NA	NA	NA
WP_148878638.1\|552550_552892_+	transcriptional regulator	NA	NA	NA	NA
WP_148878639.1\|552888_554769_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
554793:554808	attR	NA	NA	NA	NA

DBSCAN-SWA_5

964918 : 1038015

uncultured_Mediterranean_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148878779.1\|964918_965941_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.1e-23	30.3
WP_148878780.1\|966141_967395_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_024752306.1\|968097_969324_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_044635033.1\|970028_971228_+	polynucleotide adenylyltransferase PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	1.3e-20	36.6
WP_148878781.1\|971703_972957_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_148878782.1\|973206_975108_+	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
WP_148879412.1\|977505_979053_+	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.3e-76	41.6
WP_148878529.1\|981097_981973_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.4e-32	35.4
WP_148878783.1\|981944_982709_+	hypothetical protein	NA	NA	NA	NA
WP_024753277.1\|984200_985241_+	radical SAM protein	NA	NA	NA	NA
WP_044634801.1\|985256_985946_+	amidohydrolase family protein	NA	NA	NA	NA
WP_052812616.1\|986092_987028_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_024753280.1\|987069_987552_+	hypothetical protein	NA	NA	NA	NA
WP_148878784.1\|988044_990171_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.9e-07	34.5
WP_002697760.1\|991297_992524_+	aminopeptidase	NA	NA	NA	NA
WP_002697758.1\|992545_993181_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_081718812.1\|993171_994200_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_024753283.1\|994279_995302_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_024753284.1\|995661_997029_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_039914711.1\|997122_997776_-	PTS transporter subunit EIIA	A0A1B1IUF9	uncultured_Mediterranean_phage	2.2e-06	35.7
WP_148878785.1\|998079_998787_-	hypothetical protein	NA	NA	NA	NA
WP_024753287.1\|998847_999051_-	hypothetical protein	NA	NA	NA	NA
WP_148878786.1\|999609_1000743_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024753289.1\|1000796_1002332_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.4e-11	27.3
WP_024753290.1\|1002321_1003440_+	ABC transporter permease	NA	NA	NA	NA
WP_024753291.1\|1003432_1004338_+	ABC transporter permease	NA	NA	NA	NA
WP_002697730.1\|1004549_1005002_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_024753292.1\|1005007_1005892_+	DMT family transporter	NA	NA	NA	NA
WP_148878787.1\|1005996_1006206_+	hypothetical protein	NA	NA	NA	NA
WP_044634501.1\|1013001_1013283_-\|transposase	transposase	NA	NA	NA	NA
WP_024753293.1\|1013932_1015480_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	5.8e-13	27.9
WP_002698745.1\|1015905_1016544_+	P13 family porin	NA	NA	NA	NA
WP_044634368.1\|1016814_1017534_+	hypothetical protein	NA	NA	NA	NA
WP_002698755.1\|1017610_1018081_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_148878788.1\|1018092_1018467_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_039943845.1\|1019005_1020847_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	8.5e-72	33.3
WP_148878789.1\|1021383_1022658_-	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	2.0e-19	53.9
WP_148883898.1\|1022933_1023131_-	hypothetical protein	NA	NA	NA	NA
WP_024753300.1\|1023575_1025492_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.5e-135	43.5
WP_024753301.1\|1025957_1026455_+	flavodoxin	NA	NA	NA	NA
WP_081718814.1\|1026703_1026886_+	hypothetical protein	NA	NA	NA	NA
WP_024753302.1\|1027090_1027420_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_024753303.1\|1027435_1028191_+	hypothetical protein	NA	NA	NA	NA
WP_148879657.1\|1028352_1029753_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_002698788.1\|1031116_1031614_-	OmpA family protein	NA	NA	NA	NA
WP_024753307.1\|1033987_1036135_+	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	9.2e-09	28.6
WP_148878791.1\|1036546_1037488_-	hypothetical protein	NA	NA	NA	NA
WP_024752184.1\|1037733_1038015_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1487488 : 1500679

Escherichia_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024752513.1\|1487488_1487881_+	ParB N-terminal domain-containing protein	Q331U1	Clostridium_botulinum_C_phage	2.8e-17	39.4
WP_002695586.1\|1488035_1488509_+	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_002695584.1\|1488573_1488954_+	RidA family protein	NA	NA	NA	NA
WP_148883917.1\|1488946_1490119_+	hypothetical protein	NA	NA	NA	NA
WP_024752515.1\|1490570_1491659_-	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	7.5e-76	44.2
WP_002695569.1\|1491658_1492528_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	3.7e-33	35.9
WP_002695567.1\|1492524_1493070_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-44	49.7
WP_002695565.1\|1493069_1493945_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	6.4e-94	58.9
WP_148883918.1\|1493954_1494944_-	NAD-dependent epimerase/dehydratase family protein	M4QPK0	Synechococcus_phage	5.5e-09	25.0
WP_148883920.1\|1494963_1495791_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002695559.1\|1495787_1496834_-	acyltransferase	Q716G0	Shigella_phage	2.3e-05	23.6
WP_002695558.1\|1496924_1497875_-	capsular polysaccharide synthesis protein	A0A0N7KVT5	Yellowstone_lake_phycodnavirus	5.1e-12	32.5
WP_002695556.1\|1497874_1498699_-	LICD protein	A0A1V0SAS8	Catovirus	2.8e-06	35.9
WP_002695544.1\|1498731_1499814_-	EpsG family protein	NA	NA	NA	NA
WP_148883922.1\|1499890_1500679_-	glycosyl transferase	A0A2K9L639	Tupanvirus	2.5e-12	27.2

DBSCAN-SWA_7

1918579 : 1981759

Staphylococcus_phage(27.27%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002699091.1\|1918579_1919173_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.1e-31	38.9
WP_024752388.1\|1920964_1922398_+	amino acid permease	NA	NA	NA	NA
WP_148878989.1\|1923136_1924075_+	AEC family transporter	NA	NA	NA	NA
WP_081718624.1\|1924148_1924337_-	hypothetical protein	NA	NA	NA	NA
WP_002699078.1\|1924557_1924935_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_002699076.1\|1924947_1925814_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-18	30.1
WP_024751880.1\|1925815_1926511_+	hypothetical protein	NA	NA	NA	NA
WP_148878990.1\|1926975_1927302_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_024751882.1\|1927262_1927514_-	hypothetical protein	NA	NA	NA	NA
WP_044634652.1\|1927831_1928626_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.6e-43	36.5
WP_002698290.1\|1928622_1929909_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-90	45.9
WP_024751884.1\|1929927_1930509_-	hypothetical protein	NA	NA	NA	NA
WP_024751886.1\|1931384_1932134_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_148878991.1\|1932553_1933198_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_148879429.1\|1933139_1933238_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_148878992.1\|1933262_1933820_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_082048214.1\|1933771_1934425_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_024751890.1\|1935289_1935673_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_024751891.1\|1935717_1936347_-	adenylate kinase	NA	NA	NA	NA
WP_081718631.1\|1937061_1937250_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_002698319.1\|1937264_1937501_+	acyl carrier protein	NA	NA	NA	NA
WP_024751892.1\|1937519_1938251_+	ribonuclease III	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	1.3e-23	30.3
WP_024751992.1\|1938414_1939431_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.0e-23	30.3
WP_148879972.1\|1939629_1940355_+	acid phosphatase AphA	NA	NA	NA	NA
WP_052335628.1\|1940870_1941494_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_024751894.1\|1941888_1942608_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_039914919.1\|1942597_1943131_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.8e-21	36.8
WP_002698332.1\|1943370_1944306_-	TraB/GumN family protein	NA	NA	NA	NA
WP_002698334.1\|1944388_1945423_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_024751895.1\|1945681_1946509_-	hypothetical protein	NA	NA	NA	NA
WP_024751896.1\|1946523_1947222_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-20	27.8
WP_024751897.1\|1947224_1947584_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_148878994.1\|1948513_1951252_-	pyruvate, phosphate dikinase	NA	NA	NA	NA
WP_024751899.1\|1951263_1952286_-	hypothetical protein	NA	NA	NA	NA
WP_024751900.1\|1952385_1954425_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_002698356.1\|1954583_1955243_+	VWA domain-containing protein	NA	NA	NA	NA
WP_002698358.1\|1955534_1956767_+	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_081718633.1\|1956879_1957065_+	hypothetical protein	NA	NA	NA	NA
WP_148878995.1\|1957267_1958854_-\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_148878996.1\|1958993_1959203_-	hypothetical protein	NA	NA	NA	NA
WP_024751902.1\|1959468_1959960_-	universal stress protein	NA	NA	NA	NA
WP_024751903.1\|1960049_1960691_-	V-type ATP synthase subunit D	NA	NA	NA	NA
WP_024751904.1\|1960795_1965088_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	9.3e-69	26.0
WP_002698374.1\|1965101_1968626_-	DNA-directed RNA polymerase subunit beta	A0A1B1ISA9	uncultured_Mediterranean_phage	2.8e-47	23.0
WP_024751905.1\|1969138_1969528_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_002698382.1\|1969664_1970294_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_024751906.1\|1970295_1970976_-	50S ribosomal protein L1	NA	NA	NA	NA
WP_002698386.1\|1970977_1971409_-	50S ribosomal protein L11	NA	NA	NA	NA
WP_002698388.1\|1971491_1972049_-	transcription termination/antitermination factor NusG	NA	NA	NA	NA
WP_024751907.1\|1972058_1972238_-	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_002698390.1\|1972376_1972547_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_024751908.1\|1972958_1973399_-	flavodoxin	NA	NA	NA	NA
WP_024751909.1\|1973421_1973997_-	DUF3793 family protein	NA	NA	NA	NA
WP_148879500.1\|1974692_1975946_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_002698401.1\|1976185_1976578_+	D-ribose pyranase	NA	NA	NA	NA
WP_148878999.1\|1976587_1978075_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-18	28.3
WP_024751911.1\|1978091_1979036_+	hypothetical protein	NA	NA	NA	NA
WP_002698409.1\|1979154_1980048_+	D-ribose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002698414.1\|1980353_1980896_+	hypothetical protein	NA	NA	NA	NA
WP_024751913.1\|1981285_1981759_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_8

2308306 : 2312956

Azospirillum_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148879072.1\|2308306_2308657_-	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	1.2e-11	46.6
WP_024751714.1\|2308653_2308935_-	hypothetical protein	NA	NA	NA	NA
WP_024751735.1\|2308931_2309261_-	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	9.4e-14	41.5
WP_148879073.1\|2309364_2310186_-	oxidoreductase	A0A139ZPI9	Marinitoga_camini_virus	2.3e-37	42.1
WP_081718571.1\|2310280_2310622_-	hypothetical protein	D2ECI8	Treponema_phage	2.8e-05	64.9
WP_148878659.1\|2310649_2311153_-	hypothetical protein	NA	NA	NA	NA
WP_148883949.1\|2311461_2312160_-	site-specific DNA-methyltransferase	E8ZD58	Streptococcus_phage	2.1e-31	36.0
WP_148879076.1\|2312167_2312956_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	8.0e-11	25.7

DBSCAN-SWA_9

2833728 : 2842497

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044634516.1\|2833728_2835525_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-25	23.5
WP_024753047.1\|2835521_2837255_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-35	28.8
WP_044634515.1\|2837428_2839114_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.6e-38	28.2
WP_044634514.1\|2839110_2840844_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.8e-34	26.3
WP_024753050.1\|2840963_2841626_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.2e-07	26.7
WP_024753051.1\|2841618_2842497_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.1e-08	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042813

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection