CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042818	Treponema phagedenis strain B43.1 chromosome, complete genome	18 crisprs	cas9,csa3,cas3,DEDDh,DinG,WYL	13	0	10	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042818_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_1

241181-241290

Orphan

Consensus_repeat	Method
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_1

>merge|NZ_CP042818|1|241181-241290|CRISPRCasFinder
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATTGACCTTTCAAAATGCACCGAACTTAATTCCATTGGTGATGAGGCTTTTAGTTCCTGCCATAGTTTAAAAAGTATT

>NZ_CP042818|1|1|241181-241290|CRISPRCasFinder
AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	GACCTTTCAAAATGCACCGAACTTAATTCCATTGGTGATG
AGGCTTTTAGTTCCTGCCATAGTTTAAAAAGTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_002700233.1\|249890_251780_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP042818.1\|WP_024751832.1\|228426_229749_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP042818.1\|WP_148889202.1\|241994_243248_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379256
NZ_CP042818.1\|WP_044634428.1\|229856_231236_-\|tryptophanase	unknown	unknown	gnl\|CDD\|237314
NZ_CP042818.1\|WP_044634924.1\|253214_253745_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP042818.1\|WP_044634922.1\|246339_246621_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_081718609.1\|246181_246385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634443.1\|231961_233860_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_CP042818.1\|WP_148889777.1\|233883_237048_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226115
NZ_CP042818.1\|WP_148878686.1\|238901_239393_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP042818.1\|WP_002700226.1\|252859_253090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751843.1\|246830_249155_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP042818.1\|WP_024751842.1\|245015_246158_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP042818.1\|WP_044634921.1\|244198_244954_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP042818.1\|WP_002700690.1\|225600_226275_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP042818.1\|WP_148889200.1\|231504_231900_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197304
NZ_CP042818.1\|WP_024751846.1\|253876_255085_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|225224
NZ_CP042818.1\|WP_002700688.1\|227582_228314_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP042818.1\|WP_148879986.1\|226733_227303_+\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153229
NZ_CP042818.1\|WP_024751837.1\|237972_238740_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_002700233.1\|249890_251780_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP042818.1\|WP_024751832.1\|228426_229749_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	9.70333e-151
NZ_CP042818.1\|WP_148889202.1\|241994_243248_-\|ISNCY-family-transposase	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.74534e-09
NZ_CP042818.1\|WP_044634428.1\|229856_231236_-\|tryptophanase	gnl\|CDD\|237314	PRK13238, tnaA, tryptophanase.	0
NZ_CP042818.1\|WP_044634924.1\|253214_253745_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.40276e-06
NZ_CP042818.1\|WP_044634443.1\|231961_233860_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	2.58438e-37
NZ_CP042818.1\|WP_148889777.1\|233883_237048_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226115	COG3587, COG3587, Restriction endonuclease [Defense mechanisms].	0
NZ_CP042818.1\|WP_148878686.1\|238901_239393_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.32818e-21
NZ_CP042818.1\|WP_024751843.1\|246830_249155_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP042818.1\|WP_024751842.1\|245015_246158_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	5.81395e-127
NZ_CP042818.1\|WP_044634921.1\|244198_244954_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	8.42927e-69
NZ_CP042818.1\|WP_002700690.1\|225600_226275_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	8.97316e-110
NZ_CP042818.1\|WP_148889200.1\|231504_231900_+\|hypothetical-protein	gnl\|CDD\|197304	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	0.00839929
NZ_CP042818.1\|WP_024751846.1\|253876_255085_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.69586e-53
NZ_CP042818.1\|WP_002700688.1\|227582_228314_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	8.49683e-106
NZ_CP042818.1\|WP_148879986.1\|226733_227303_+\|DJ-1/PfpI-family-protein	gnl\|CDD\|153229	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme.	1.12044e-56
NZ_CP042818.1\|WP_024751837.1\|237972_238740_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.59368e-72

>NZ_CP042818.1|WP_148878686.1|238901_239393_+|DDE-type-integrase/transposase/recombinase
MADTRQQWIDEKTIKGARHGATASLWNFYLWFVYEFCLLTLEYQAKHRLESALQRGRLRAAEALLHSDQGTTYTSHAYREKLTELGMIQSMSRRGNCWDNACIENFFGTIKCESGYYDTLKNGLLTYKQMEELIGKYIEFFNNERIQKKLGWKSPVDFRTQVA
>NZ_CP042818.1|WP_024751837.1|237972_238740_-|IclR-family-transcriptional-regulator
MVEEKIQSIERVFKILEAFKHFSDGAGLTELSEYVDLHKSTVHRFLSTLIVLGYVKKDENNKYNLTLKLYTLARHKTTDLDLITICHKHLKEFSKTINEVIHLVMQDDIYAVYIDKIDSTNAITLQSKVGRRALLVSTSVGKAMLSNCSYDEIREIWDRSSQVKTTENRITDFNVFCKELEKIRQTRIAVDNEENELGVYCVGTAIYGATGEVKGAISITGPTFRMKEKINDELYAKLLHTADIISKELGYAIDS
>NZ_CP042818.1|WP_148889777.1|233883_237048_+|DEAD/DEAH-box-helicase-family-protein
MKFQFKTQKFQTEAVESVVRVFAGQPNSGMSKYRFDLGKREGQGVHDSQKYRQPILVFENEDERRRHLTELYHKANLQISEEDMEFIEAAYRNTDIKLSDEELLKNIQTLQKENNIKYSNNLVKELGTVSIDVEMETGTGKTYCYIKTMFELHKNYGWSKFIVVVPSIAIREGVKKSFEITQEHFMELYGLKARFFIYDSDNLHQLEEFSQSSGINVMIINMQAFNTKKNKRIIYDKRDRFNSRRPIDLIKANRPIIILDEPQKMQGAATQEALKKNFNPLFSINYSATHKKSHNLVYVLDALDAFKKKLVKKIEVKGFDVKNIGGSECYLYLSSIDISPKKPPRARLELKVKRANEIKRETYFFNVGDSLYIKSNNLEQYKNISIAEISPIRSLVTFSNGEELAVGEASGDISEDYIRRIQIRETIASHFEKEEALFTQGIKCLSLFFIDKVDKYRQYNKEGDALLGDYGKIFEEEYEAALKNVLDDKNLSPDYAKYLRRINVQSTHCGYFSIDKKTGRSVDSKIKRGDSFSNDDSAYDLILKNKERLLSFEEDARFIFSHSALREGWDNPNVFQICALKHSNSDTTRRQEVGRGLRLCVNIEGERQDAEVLGEALVHSVNKLTVVANESYNKFIDGLQKDIEEALYERPRTLSIDYFEHRSLYLPDGETFTFEAAEARAAYNYFVRNEYIDDNGKVTDVYRDASETGNFAPLPEKLAPVADSIHNLVQGIYAPSGLEGLMSNGHCAKVKENSINNDNWEKFKELWEQINKRYAYTVDFESAELIQKSIEAINKELFVPKPMYKRTTGEQEGEVFKTQATQTIILDRVAGNFVEYDLIGKIAEHTTLTRKTVAAILKGITREKLNLFAYNPEIFISKISDIINSQKAAVVIEHISYKISGEDPYSQDIFNTSRSSDEFKKAFTAKRSIQNYVFVDGSVKDSVEGKFASALDNADEVIVYAKLPKGPRGFYIPTPVGNYSPDWAISFKKGTVKHIFFIAETKGSMDSLQLRPIEQTKIFCAKKLFNELKLEESKVRYHEVDSYDTLLEVMGKIK
>NZ_CP042818.1|WP_044634443.1|231961_233860_+|site-specific-DNA-methyltransferase
MRTENIADANFAALSRMFPNAVTETIDENGEKIRAIDADKLAQEINIRVISGMEERYQFTWPDKRKSVVLANMPIAAALRPCREESVDFDNTENLYIEGDNLDVLKLLRETYLNRVKMIYIDPPYNTGKEFVYEDDFTESAADYVARSGDYDEQGNRLVKNTEANGRFHTDWLNMIYPRLRLAKDLLSDDGVIFISIDDNEVHNLRKVCDEIFGERNFVGCCIRRTINSGKNDVKTISVFHEYLFIYSKNMDKIRLRQKEKSEEERIRLYKESDDYIESRGRFYLTQLNKNSIQYSDSLNYPILGPDGVEIWPGEGFHDKKWCWRWSSKKVQWGISQGMIVFKATRSGKYKVYTKSYELMDNDGNTISRQNPYNSLEFTGKEYANFNATPELSVLFDGEKIFNFPKSETFIREILRLGSLSSNSLILDFFSGSATTAHAVMQLNAEDGGNRKYIMVQIQELTNEKSEATKAGYKNICEIGKERIRRAAEKIRKENPDAKFDGGFRVLKLDSSNMKEVYYTPDEYTQQDFNLDGLTDNIKEDRSDEDLLFQVMLDLGIPLSAKITRDNNLLCVNDNYLIACFERVDIALITKIAKRKPHYAVFRDGSFTNDAVLSNFEQVFKTHSPNTIRRIL
>NZ_CP042818.1|WP_148889200.1|231504_231900_+|hypothetical-protein
MGVALSLSLSLSHVTYPYSKTTHKKNNSVIFCLKNYITTHKFLNLLNFKAAHNGKSLDMLIHAIILMQESFKQHVRRVSHIMQILDNANKTVKDDLAATLSNGDKFYMAAATHKMNLFKKIKNLKIDLEEI
>NZ_CP042818.1|WP_044634428.1|229856_231236_-|tryptophanase
MKKYVAEPFRIKMVETIKMTSKAERKKKLEKAFYNVFNLRGEDVYIDLLTDSGTNAMSADQWAGIMHGDEAYAGARSYYHLIDAGKDIFGYEFIQPVHQGRAAEKVVFPLILGKGKIAISNMFFDTTRAHVELAGARAVDCVVEEAKHPQVQSPFKGNMDVKKLEEKINEYGKENVGLIVMTITNNSAGGQPVSIENMRQVAAIAKKYGIPLDIDAARYAENAYFIKQREEEFKKSSIKAIIKEMFSYADMFTMSAKKDAIVNMGGLIGIKRDAELYQKIKGNCISYEGFITYGGLSGRDLEALAIGLYEGLEEDYLKYRIGQMEYLAGLLDDAKIAYQSPVGGHGVFIDAKALLPHIPYHQFPGQALALELYLEAGIRACDIGSYMLGNDPDTGKQLQADFEFTRLAIPRRVYTQSHLDIIAEALITIKKHADKVPGYKITWEPPVLRHFQAHLEPMK
>NZ_CP042818.1|WP_024751832.1|228426_229749_-|sodium-dependent-transporter
MKKQEDRELFGSDFGFIIACIGSAVGMGNIWLFPFRAGQLGGAAFLIPYIIFVVLIGYVGIVEEMSFGRAMQTGPLGAFKKATAMHGNNSGEFIGWIPVIGSLGIAIGYAIVVGWILKFTIGSFTGSMIGAENSGAYFGAIAGKFGSLGWHVMGLAITFIIMIAGISSGIEFVNKFMMPAFFVMFIILAIRAATLPGAGSGYAFLTQPDWTKLADPKTWVYALGQAFFSLSLAGSGTVVYGSYLSDKESTTKSAKYVAIFDTIAAILAALVIIPSVFAYGIEPTAGPPLMFITMPMVFKEMPFGAIFAAIFFVAVLFAGVSSLINLFETPVEALQNKFKLSRLASVSIILGLALLVGVFLESGDNLGKWMDVVSIYVIPLGALLSAIMFFWVAGKDLVLKEIAKPQLEPAHSSFYIMGKYVFCGATLIVYILGIFYGGIG
>NZ_CP042818.1|WP_002700688.1|227582_228314_+|endonuclease-III
MVINRFYPYRESKIIACLIVLSYSIKPLTVRLLDKKAIYEVFKRWQSNNPEPKGELYWKNTFTLLVAVVLSAQATDVGVNKATKVLFEVASSPEEILKLGEENLKEYIKTINLYPTKAKRIIGLSEQILREFGGKVPCSREALESLPGVGRKTANVVLNIGFGMPAIAVDTHILRTAPRIGLSDGKTPREVEEDLLRITPEEFLPNAHHWILLHGRYICQARKPKCAECFLEDICCKNGVEAI
>NZ_CP042818.1|WP_148879986.1|226733_227303_+|DJ-1/PfpI-family-protein
MGGKSMKKAYVFIANGFEEVEAITPIDYLRRANIETVVVGVGTRQVKSPRNVTIICDTELNEVLEKTDETLLVVLPGGLDNSKSLGESEAVENFVKAVHKNGGIIAAICAAPVLTLGKWGMLDGKKFTCYPGMGEDLATKPLQGERVVRDGNIITGCGAGAAEEFSFALIEAVSGKTALQELKKSIVAR
>NZ_CP042818.1|WP_002700690.1|225600_226275_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MANLYLVGTPIGNLGDITMRALETFKAVDVIACEDTRHTLKLLTHFGIRKPLVSCRARNEEEAAKKIVALLDEGKNIAYASDAGTPGISDPGAVLVQFARKAEHTIIPIPGVSAFTALVSVSGSRDKTLIFEGFLSPKAGRRKTRLTELFSANAGFVLYESPYRIVKLLQDIAEIDKERRITVGRELTKLHEELISGSAEEVLNEMAARTAIKGEIAVFVSGRS
>NZ_CP042818.1|WP_148889202.1|241994_243248_-|ISNCY-family-transposase
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGLAAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGIYSPKKRRTRKKVHKTRNRRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTEEQVTQFGKIIKYLGIDMFPAHSSQAKGRVERLWQTLQSRLPVEFARRGITTIEQANQFLKEYIGIFNKQFGVSACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNHLFKIEQNKFGAGTTVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042818.1|WP_044634921.1|244198_244954_+|NADPH-dependent-oxidoreductase
MNEVIKLLQTHSSIRKFDASYVIPEKDLQEIIKASKQAPSWMNGQPYSIIVFNDAKIKEDFAVNVVGAHDKAAKNMNSIKACSVFLLYCIDFYKFTVCGDFSLSDSAEPLMIASVDIGLAMQNAAVAAESLRLGCVCIGGIRNQQAHIIEALKLPKFVYPLVGLAIGKPDENTQVKPRLPDSVNVFYNRYDAAQVQEKDLQAYNQTMKDFAVQSGYTTEDWINKFLEFYTKPHYAKNTDEMLAKHGLIKKN
>NZ_CP042818.1|WP_024751842.1|245015_246158_+|cysteine-desulfurase
MNVYLDWAATAIPEQEIIEEAVREAGKYFANPSARHALGKAAAERLETARKTAAECLQVQPEQLIFTSGGTEANHIVLLSMLNRSESLNIAAGAIEHAAISEQVKMLKKNGRKVREIPVNKRGFITPEAVLQTIDANTTLVTVMAVNNETGAIQPIREIGQAVSEFCKGKRKIHFHVDAVQAFGKIPFELANLPISSAAMSGHKIGAPRGIGFLYLAQTLEAFLCGGGQEGGMRAGTENLAGIIALAGCLQKTIPAVAKTYAHVQELSDYLIQKLLCIPGISIIPETRMEDCNNFSPYIIQCTNENIPGEVLQRCLSDMGVYVSTGSACSSKKRSRPILEAMGIGAKQQLNTIRISLGKSTTKEELNQALCCLQTCIEKL
>NZ_CP042818.1|WP_081718609.1|246181_246385_-|hypothetical-protein
MVPNRIEFENYHSYINRSFQTYRFHFDTDGKMKPLCRALFIIWISKCKINLSLRFFCKFYCILPAGF
>NZ_CP042818.1|WP_044634922.1|246339_246621_-|hypothetical-protein
MVNLPTVAQFQTIFCLIVQRKQAKLVGQFFCRKSNSEPPRMAVVPRSSDVLKQDYLQSFKTRRFHFATDGKNQNGHGRPWFQTELSLKTTTAI
>NZ_CP042818.1|WP_024751843.1|246830_249155_+|methionine--tRNA-ligase
MKRKLITSALPYVNNIPHLGNLLQVLSADVFARFCRLKGYKTLYICGTDEYGTATETKALQEGKTPQQLCDYYHAIHSDIYNWFNIAFDYFGRTSTPQQTEITQQIFLDLEKNGFITEHEMQQLYCPQCRRFLADRYVRGTCPHCSYEDARGDQCEQCGKLLDPTELKNPQCATCGGTPEPQTTKHLYINLPAIISQYQPWMEEASKNGEWSNNALQMTKSWIRDGLQERAITRDLQWGIPVPKAGYEKKVFYVWFDAPIGYISITKSFTDITGGDWKSWWLDQKDVELFQFIGKDNIPFHTVIFPCSLIGSGQNWTKLFHMSSTEYLNYESGKFSKSKGVGVFGSDAKESGIPADMWRFYLFYNRPEKNDTQFTWKDFQERVNSELIGNFCNLVNRTFSFISRYYNGCIPEVDGTQSSRADVAEPIKQLRKAVESYKKSITDLMDWANLRDGFHQIFELSSIANKAFQDGEPWKNRDADPEKTEALLSELCYFIKDLLILIHPFMPEYASQAASFLGIKIWSGNVFNEQKPDYTIPKSALSWSNIGERKGLKTVQNVVIIYKTLDDKTINAYRERYAGNQQERKKSKEPAAPAKETLPADAIFSQKIALKTAKVIRVERHPEADKLYIETLDDGSGEERVILSGLVPYMEAEEILGKTIIIADNLKPRKMRGIESRGMLLAADYFEGETRKVELLEAPWAAPGTPVLLEGEIENANAEAVAEHYQKRPHSIDADVFFSVPIQVTDYSVTIAGKKLTVDGKPITTAKTQNGTVG
>NZ_CP042818.1|WP_002700233.1|249890_251780_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MNFRYSDYDVIVVGGGHAGIEAALAAARMGEQTLLITQTIDSIGRLSCNPSIGGISKGNIVREIDALGGEMGKLADACMIQYRLLNKSRGPAVQSPRIQADKFLYAQKAKHALELQKNLHIYQDTVVDVLSSGTSETGTVESGAVQAILTARGRTISAKAVVLSTGTFMEGKIYIGEYEAAEGRLGEKAAIGLGSALAQKGFTLGRLKTGTPCRVLRKSVDLSKMEIQEADAIMRPFSFAAAEVHRPQATCYIAYTNEHTHRIIRENFHRSPLFSGKIQATGARYCPSVEDKVKKFPERNRHQIYIEPEGLDTEELYINGLSSSLPEDVQDAMIRTIEGFESVVITRPGYAVDYAYVSPLQLGADLQTHRIKGLFTAGQTNGTSGYEEAGGQGIIAGINAALYSRAQKTQKPYEPFVLGRDEAYIGVMIDDLITQGVDEPYRMFTARAEYRLKLRHDTADERLTEKAYAIGLQTDSAVHRVRDKIKERSGIIAHWQTLRITSTQAEANPELQSHIGKTFAQTLQDPTVPLSLIVNLDVQAAEHNEEILHAAELEIRYEHYIIAQNKRIEKMRKMENTKIPPNFSYANISGLSTESRTRLEKVRPETIGQAARIQGIRPSDIMLLMVQLR
>NZ_CP042818.1|WP_002700226.1|252859_253090_-|hypothetical-protein
MAKSKISKVNKKIEEKLFGAHEKIKDVVVGAYQKIEDKFVDQYLTKDGESIEDAKKRLKAENLKLEKEHKENESFE
>NZ_CP042818.1|WP_044634924.1|253214_253745_+|TetR/AcrR-family-transcriptional-regulator
MNIKNNKRKRASIEKIEKIFAQLLQKKEINKISVTEICKKAGINRTTFYANYLDIFDLAEKIGKKAIDDFNELYEEEVKSQYNSNDFLKLFSHIKENQLLYKTYFKLGIDSNFKIRRYDTKLAEKYYSNKYIDYHIEYFRAGITAIIKMWLNNNCDLEPEEVFQIIKEEYKNKFPS
>NZ_CP042818.1|WP_024751846.1|253876_255085_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MKEDIINSNAGEGLTVKEIQEKTDLYEPMSFLQSRFWADFKSEYGWAYKQFSVTADSSKFILTVLLRNIRPFGKLAYFPMAPETLLSEDSCDYETAKKQGDLLVRLTEALRAKLPKDVFLFRFDPPWSTRIDNAKGTLENTEPTNVSGAKIPARAKNIAQAFPLLPQSSGGYRIIDAPYDVQPPDTVCLDLSQTEEFLSENLKSKWRYNIRLAEKKGILIERKEGEEAAAAGIDIFYALYQQTAERDAIAIHRKEYYAKLCRKSCPEARIFVYIAEYEKKTLASIITIFTKKEAVYLYGASSNENRNLMPTYLLQWRAILDAKEHGCLRYDFYGIPPTDDPSHPMYGLYRFKTGFGGSILHRVGSLDVPVKPLRYVCYTAAEKLRAFWFKKIKKMLRRGGGS

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Crispr_ID: NZ_CP042818_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_2

281982-282076

Orphan

Consensus_repeat	Method
TGTCAAAAACTAAACCACGAGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_2

>merge|NZ_CP042818|2|281982-282076|CRISPRCasFinder
TGTCAAAAACTAAACCACGAGTTTGAAAACTCCCTGTTGTAAAAGGAGCCCCGGTTTAGTTTTGACGTTCATGTCAAAAACTAAACCACGAGTTT

>NZ_CP042818|2|2|281982-282076|CRISPRCasFinder
TGTCAAAAACTAAACCACGAGTTT	GAAAACTCCCTGTTGTAAAAGGAGCCCCGGTTTAGTTTTGACGTTCA
TGTCAAAAACTAAACCACGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148889203.1\|275225_276224_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|224232
NZ_CP042818.1\|WP_081718616.1\|273009_274554_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739
NZ_CP042818.1\|WP_002700175.1\|277645_278086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751859.1\|274851_275229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634930.1\|290163_292266_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP042818.1\|WP_024751864.1\|278153_279002_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NZ_CP042818.1\|WP_024751867.1\|283069_284536_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP042818.1\|WP_024751870.1\|287962_288967_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
NZ_CP042818.1\|WP_024751857.1\|271476_273003_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739
NZ_CP042818.1\|WP_081718619.1\|282182_282398_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751868.1\|284543_287234_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP042818.1\|WP_024751871.1\|288973_289804_+\|FAD-synthetase-family-protein	unknown	unknown	gnl\|CDD\|185679
NZ_CP042818.1\|WP_002700166.1\|282609_283059_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|237774
NZ_CP042818.1\|WP_024751862.1\|277331_277649_+\|DUF4325-domain-containing-protein	unknown	unknown	gnl\|CDD\|379507
NZ_CP042818.1\|WP_024751865.1\|279007_280558_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_CP042818.1\|WP_024751866.1\|280561_281692_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP042818.1\|WP_024751869.1\|287403_287583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002700155.1\|289807_290077_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP042818.1\|WP_148878694.1\|276447_277317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002700161.1\|287598_287976_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148889203.1\|275225_276224_+\|radical-SAM-protein	gnl\|CDD\|224232	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only].	7.76942e-81
NZ_CP042818.1\|WP_081718616.1\|273009_274554_+\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	2.11548e-46
NZ_CP042818.1\|WP_024751871.1\|288973_289804_+\|FAD-synthetase-family-protein	gnl\|CDD\|185679	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.	1.96895e-45
NZ_CP042818.1\|WP_044634930.1\|290163_292266_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP042818.1\|WP_024751864.1\|278153_279002_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	8.32715e-79
NZ_CP042818.1\|WP_024751857.1\|271476_273003_+\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	3.40645e-41
NZ_CP042818.1\|WP_024751870.1\|287962_288967_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	1.58662e-88
NZ_CP042818.1\|WP_024751867.1\|283069_284536_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	2.72e-153
NZ_CP042818.1\|WP_024751868.1\|284543_287234_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP042818.1\|WP_002700155.1\|289807_290077_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.81668e-44
NZ_CP042818.1\|WP_002700166.1\|282609_283059_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|237774	PRK14637, PRK14637, ribosome maturation factor RimP.	2.30972e-58
NZ_CP042818.1\|WP_024751862.1\|277331_277649_+\|DUF4325-domain-containing-protein	gnl\|CDD\|379507	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 99 and 341 amino acids in length. This domain is distantly related to the STAS domain.	1.34508e-07
NZ_CP042818.1\|WP_024751865.1\|279007_280558_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	6.64516e-09
NZ_CP042818.1\|WP_024751866.1\|280561_281692_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP042818.1\|WP_002700161.1\|287598_287976_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	9.50096e-35

>NZ_CP042818.1|WP_024751866.1|280561_281692_-|tRNA-guanosine(34)-transglycosylase-Tgt
MKIRKIFTECHKDAHTAARTGVIALPHGDLRTPAFMPVGTAGTVKGMTKDDLEEIGFEIILANTYHLFLRPGVEVIKAAGGLHGFTQWKRNFLTDSGGFQVFSLANLRRLSDEGVSFQSHLDGSSFFLSPELVVQLQTGFNSDIQMQLDICSNYGISKEQTEKELGLTSAWVKRAFSEWLKTPAEYQGSLFPIIQGGFYKDLRLRSIETVCELNPNGLAIGGLSVGEPTELYAEMLAFTAEHLPKNKPVYIMGIGTPHYILEAVKNGIDLFDCVLPSRNARNGSLFTRKGPISIKKKEFEYDFNPIDSQCNCKVCRTYSRAYLRHLFRSKEILYSMLGTYHNLAFLYTMVQEIRQAIEEDRFAEYYKNFLAEYTGG
>NZ_CP042818.1|WP_024751865.1|279007_280558_-|HEAT-repeat-domain-containing-protein
MYMKKIFCVFCMVFFTLFFVAAEEKTAGSKSNSVQTDTADTTDTELDLESEDAAEASAEEQIEEDPETKKQLDTIRYGLEGEVLTLIEELKKNEDTTLNAALQELFAKTKSTAVRDALFDLFSAQKNDSIKDFALEVLKDPVEYKPSTVRNSIKYLVAIEEKEAAPLVRELMKDNSEYADDCISAFGKIGSADDALFLIDYFKNELDDDQKTTLIKRQNLMVALEQLHLPETAAFLEEVARDSGENAVIRGSAAIGLAQIGDDATVSILSDLYEDSDPILRIAAVKGLGFFTTTEAEEILLQGFKDSYYKVRMQSLEAAAEKKPIAAFPYILHRAKTDPVDAVKYAAIKSVGAYNTEEGNLWLKETFLDKSKSNTLRVKAAEALMNNNLDFFYADLEQIMIEVAEDETKKKLRYELGKIFAKVQTELGDSIALAYLTSKDAQTIALGLDMFKQNRYAQSAVRVSEIAEDSNFGSLQRRAKTILADFEQQETPAEEKTEALPEPEDEASPDSDTDSQ
>NZ_CP042818.1|WP_024751864.1|278153_279002_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYRHGFHAGNRADVFKHSVLVAFLKLYTKKQKPFTAFDTHAGSSVYQLTSEYALQTGEAAEGIIPLVSAFEKKLLPQPIPESLEAYLNLSLRYYRKDCSYAGSPEIIKNFLRQDDELILCDLHPAEGAALRALYKNEKRIHVHIRNGYEAVCALTPPKSGRGFVLIDPSYEVDSDYENVITTVQKLHKRWRAASFIIWYPILKRREYETAELKKALSALKGSESFYVENPVRPDFLRPVTPPPAPPAGEYGLQGSGMFVINPPWGMQEAATTIAEWLRKV
>NZ_CP042818.1|WP_002700175.1|277645_278086_+|hypothetical-protein
MTIFLSLVSGLVGAMVGAGIQIFYNNKIEKQRLLHDYKKICFAEWLHLNEELLILLREPQKENNTVFRQAIKQKTELLSFIAAVSKKHEKAVSKLKKHIVDIDERISLSDFAEEAVNIGKVQGNKTKLIREVSTLITEVLDKLAKL
>NZ_CP042818.1|WP_024751862.1|277331_277649_+|DUF4325-domain-containing-protein
METLKIAECGNGYQYQGPRFDDLGPDSGEEFRDEYLIPWLKNNNNASELCVDFEGTVLFTPSFLEESFGGAIRKGFEIVRKIQFKNIPPDVKQQLAKYINKAKKQ
>NZ_CP042818.1|WP_148878694.1|276447_277317_+|hypothetical-protein
MERKEEEIFFILFQAEKINTPTLDFSKVKYIDIGSAIYIKAFVEFLRENNREPKISCSPKNQKMRQILQHLGIFDYQLKITYNDIRCWAVRKWHKDFKKYPGVNFGKVLYKEILPEVLKDKIPSTEFSRIASSLSELLSNCTEHAYTKQDVFTNFYLIAGEYENDIKKSNTFSFCILDYGQGFKASLKKNTLFESVINKFKEDADSNLLKEAAKGNFNADKAKNSGRGTGLPAVTESVKLIKGSLYLYSDNGSYKVKKETEEVRDRRYPVRGSIIEVILPINDEGNDDI
>NZ_CP042818.1|WP_148889203.1|275225_276224_+|radical-SAM-protein
MSDFFSAYDSCAVCPRRCGVNRNAGQRGFCGETSELRIAWAGLHFGEEPPVTGTGGSGTVFISGCNLGCPFCQNFQISQQGMGRAVSAEAFADICFALQNAGAENINIVTGSHAVPGIAAGLLRAKERGLDIPVVWNSSGYESTDALDMLDGLVDGWLPDLKTLNTDIARAVFKAADYPSTAKKAIKKMVRISPLVLDGSNQKRYPAGKLMSGVIVRHLALPGRIADTALVLSWFAKTMKDSALLSLMTQYTPVEANPRTKDMQAFENRLLTSSEDSALRNLLSELEIDNGFYQELIEDPDWLPDFTRIQTFSSKLSKPIWHWREGWVSKEV
>NZ_CP042818.1|WP_024751859.1|274851_275229_+|hypothetical-protein
MNIIDKFYSDAKRRAAAVEFSEGRKIIADLFCKTVAVYDKQAVQLAEDFADYRLGAEISAIDEDIEWFYKIFSLIDGSFDDSMNFSEEDWEAITVIIDAAADDLDMDLLNSLMAVIVDRKKIRGR
>NZ_CP042818.1|WP_081718616.1|273009_274554_+|LTA-synthase-family-protein
MEGSSLMKSELENFKRIKNLIPASLFIFLYAALFASIIWVHSTFPNISIDEIIFTLKTPQGDADKTILLTVFIFLIIFPLLLAVSYFLISFFLSPVIIKRKHKKNIQFIPFPIRFTVKKNIFFFGCFLFLLLVFLQYKTCIINYVFYQLQGETDLYENYYTDPKTVTYSFPEKKKNLIFIYLESIEITATAKKYGGLLPYDTIPELRKIAEEHLSFSNSEKLGGFTQVLGATHTIASMVCSNLGVPLGLDPLGSRKNLRKNFCKGGYGLGDILADNGYKNIFITGASATFGYKNLLLKNHKDFEIKDYPYYIATGKLPQKYKVRWGFEDAKLFEFAKEELSNISDKGPFFLQVFTTDSHTPGGYLPSQYKREFKTKIQDVYRNASKMTGDFVAWLKTQNFYDNTVIVILGDHQYMGGGLYPFGTRKDERHAYNAIINSQATTAADKNRTFAAFDFCPTILEAMGIQFNAEKLGLGRSLFSGKKTLLEEIGTDQFNAEAQHRSSFLAEIIEPRFK
>NZ_CP042818.1|WP_024751857.1|271476_273003_+|LTA-synthase-family-protein
MFTIKKNIKRQYSSLFFTSIVVLFVSFLIIGMLWVKKTYSNLNIEQLIFFRSVPTAGAPSDFVILSYIKVFVIPFCITVFYFFSALFFKQALFINLKKKQIQIFPFFIKPRPRNIFLFITVWLLVFLGFWQCKIKFFTYVYYQYQPETDLYSKYYVDPSKVEFTFLAKKKNLIFLYLESVEASITAKEYGGLLPYDTIPELRKIAEENLSFSHGEKLGGATQVLGTSHSLASLVNTSLGVPEMLPPFFSENLKSHFFTGGYGLGDILFDNGYTNIFISSSCPQYGYQDVFVKNHKNFSIFDLNHYRSIGKLDKDYQVWWGFEDSKLFQFAKEELAELSEKEEPFFLMLFTGNTHTPKGYLEKDAEKKFKNQIHNVFADSSKQVGEFIQWLKKQSFYEDSVIVILGDHQYMGDDLYSKNIKEKDRHTYNAIINSQVHTVQTKNRVFATFDFYPTIVEALGIRFHAKGLGLGRSLFSGEKTLLEEIGVNKFNEEIQRRSSFYQNHIIQKK
>NZ_CP042818.1|WP_081718619.1|282182_282398_-|hypothetical-protein
MSKSERARTPVVPRRNDVLKQSSLQSFKTRRCNFAMDGKITPTRRRSESQNVNTSPLLLCRAFQAYASPRF
>NZ_CP042818.1|WP_002700166.1|282609_283059_+|ribosome-maturation-factor-RimP
MTYVKKTDIPYFTDCESLVNGLGYRLVNLSAVKQKAGWQIQAVVYSEKGVGIDDCSKVHRALLPRLEALLNSQDVSLQVSSPGINRNIKSTIEFAAFIGEAIAVWSAEISDWREGTLADTTEEAITIETKEGMAAISYADIKKAKLNKM
>NZ_CP042818.1|WP_024751867.1|283069_284536_+|transcription-termination/antitermination-protein-NusA
MFGVSNNDIRRFAQEKEMDEDLAFKIVEQTLKAAYKTTFKTDENAVVTFGDNHVSIYSRKKVVDEVDDDVTEIDLEDAKKLTENAELGDELLVELDPENFKRGSVQAAVQRIHQLSRELQKDSLYAEYKSKEGEIIIGYFQRMREGSIYVDLGKVEGVLPRKYQIPGEEFHQNDRIKALIREVKKHQSNLVQLILSRTDADFVRGLLSSEIPEIYDGIVEIHKIVREPGYRTKVAVFTRREDIDPVGACVGQRGARIQTIIKELDDEKIDVVEYSDDPAEFIRNALSPAEVLNVIILDEEKRSALAVVSDSQLSIAIGKQGLNVRLANRLADWSIDVKTEKQFAEMEVVTDSRKAVEELFSDDEEVAEYDIQEELPNLDPAIITILHQNGIKEIETLVNLSENEVRALEGMTSEYVEELFKEINENFEIVQEERIDEPEQTNTEEQLPEYEEQSFECPECGARITTDMTECPNCGIGLSFEYEDEDEE
>NZ_CP042818.1|WP_024751868.1|284543_287234_+|translation-initiation-factor-IF-2
MAEKNESLQPDVILKKNRTDVPSGELKTASAEEKPKKRLVRKKVLPKQKEEGVKVKKVVTVTATAKKSSEEKEESKKISQPEVVETVQSTAPVPSPEEKKQPKSSEKKKEEKPAPTEPEKKVVKTASSKEKAPSEGGQKKQKVPGLRVLDITAERPNRKAGNLAGQGGNAGTRKERYGGRQDNFTGAQARENAGMRTSYGRGKFAGKDGNRQNAGQGGARQGGGFGQRQNKQGFRPQGGFAGRPPAAPMPMETNKTSQGKKTFKGKKQIYQRKEEELDFFEEKLLQQKKKSKEKTSSVPKQIEIMESISVADLAKKMNLKASELIGKLMGMGMMVTMNQSIDSDTATILASEYNCDVKLVSLYDETLIESNDDEGGEMRSRPPIVTIMGHVDHGKTKTLDAIRRTHVSEGEFGGITQHIGAYTVSTPKGNITFLDTPGHEAFTMMRARGAEITDIVVLIVAADDGVMPQTIEALNHAKDAKVPIIVAINKIDKPEANPDKVMTRLSELGLMPEEWGGDTMYVKISALQRLGLDDLLDAILLQAEILELQANYSCRAEGKIIESQIDHGRGIVATVIVQRGILRTGDPYVAGIYSGRVRAIFNDRGEKIEEAIPSMPVEILGLEGMPNAGDPFQVTESEKIARQISSKRQELKRYEDSRNVKKVTLDNLYETIHDGEVLEFKVIIKGDVQGSVEALKQSLEKLSTKEIRLSVIHASAGAINDSDVMLAAADANAIIIGFNVRPTPQAKILAEQEKVDIRKYNVIYKAVEEIELAMEGLLRPDLKEEVIGLAEVRQVFKVPKIGNIAGSYILEGSVKRNSHVHVIREGIVLHSGKISSLRRIKDDVKEVSAGFECGIGIENYTDLKEGDQLEFIEVVEVARKLKDTEKYEPPKASTEE
>NZ_CP042818.1|WP_024751869.1|287403_287583_+|hypothetical-protein
MPGGIATGGLRPQHHYGKLLTVAPCRALFIKLFMVFVRCSKKTLCRELNKNIVEQKILF
>NZ_CP042818.1|WP_002700161.1|287598_287976_+|30S-ribosome-binding-factor-RbfA
MSEFRLTKLGEQIREEISKMISSGTIKDPRVSNFLSINRVDVSADLAYAKVYVSSFMDSHKTKQGVSGLENAAGFIRTTLAKKLHVHKFPQLSFIYDESIKEGFDMVKKLDSMDISPEEEQDEEN
>NZ_CP042818.1|WP_024751870.1|287962_288967_+|tRNA-pseudouridine(55)-synthase-TruB
MRKIEQDLIIPFAKQAGMTSFDSLWQVKHALKTKKLGHTGTLDSFADGLLVLLSGKLTRLAGRITDFDKTYITRMEFGKQTDTLDPEGEVIDMKELPQVEAFFSVLDSFTGVITQIPPLYSAVKIKGQRASDRMRQGEAVVLKERSITIYSLRVVSLESDGKTADPSAFASGALLSAATLEVSCSKGTYIRSLVRDIAAAAGSCAFVSALRRTAVGPFMLAEAAGYDKLVEFGKTESEVNQSRTQLLYEEIKAASKTLDTKTAKKLGFPVVEINRAFVKNFFHGQKIQKEWFNTVPASSGSRLIAVFSCDNCIGLIKNSGNSFNYDTVFQIEGM
>NZ_CP042818.1|WP_024751871.1|288973_289804_+|FAD-synthetase-family-protein
MEIFSWDALVKAKAPLITQGAAVSIGGFDGPHRGHVLLFEKVFEAAKKENLKAGLITFSRSPRFKKAGENYVGDVSTLRLRLQKFEELGFDFIVLIDFSCSFARIEGVQFFDILLKTIRIRYLAVGTDFRCGYRLDTGVPELIQLGSEQGFRFDSIGQLTAANNLRISSSAVRVAVEKADFTLAKDLLGYPFLLDIKDVFTPDEQKVCSYKAVKQITQILPPDGRYSVKVFLTYKTTVVALLTIHEGSIVLTFDSIQKNIPAEEKDFDTVEFIQKE
>NZ_CP042818.1|WP_002700155.1|289807_290077_+|30S-ribosomal-protein-S15
MALTKEHTASVVAKHGSNEKDTGHAHVQIALLTERIKQLTEHCKTHPKDKSSNRGLLVLVGQRRRLLKYLQRTNLEGYRALIKELGLRK
>NZ_CP042818.1|WP_044634930.1|290163_292266_+|polyribonucleotide-nucleotidyltransferase
MKHTVSYKIGDSELILETGRLAKQANGAIFAQFGGSAVLATVCASDQSQEGLDYVPLTVDYNEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFEKDFGRDIQIIPTCVSSDMINPPDILAVIASSAAVVISDIPFNGPVAAARIAYVNGEYVINPTFKQIDRAEMEIVVAGTKEGITMVEGGAHEVSEEVMLTALEKAHEFIKIICDLQEQLRNACGKEKLPLVPLSVELENKQAIHDEAYPRLSEALYVKGKFERRAACDAVKADIAEKYAEQLEDEVQTKLFNALFDDMEYHILRENILDKGLRVDGRNTEEIRPITCEIGVLPRPHGSAVFTRGETQSLAVVTLGTVFDEQVYDDIEGDRRENFILHYNFPPFSVGEVGRMGTGRREIGHGYLAHRSLSPMIPSREKFPYTVRVVSEILESNGSSSMATVCGGTLSLLHAGVPMKSPVAGIAMGLITDGDRYAILSDILGEEDHLGDMDFKVAGTENGITGFQMDIKIAGVSSEIMKNALAQAKRGRMHILGIMNQTISKPNADISKYAPRIECVKIAVDKIGALIGPGGKNIKALSEQYQVTINTDNDGTVTIYGKDSQSALDAKAAVIGVVEEPEVGRIYQGTVKKIMEFGAFVEILPGKEGLCHISKLSRERVGKVGDVLKEEQRIPVKLLEIDKMNRLNLSYIDALEELEKKAEK

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Crispr_ID: NZ_CP042818_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_3

366571-366663

Orphan

Consensus_repeat	Method
GCTTTTTCCGGCTGCAGCGGTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_3

>merge|NZ_CP042818|3|366571-366663|CRISPRCasFinder
GCTTTTTCCGGCTGCAGCGGTATAGAAACACTTACGCTGCCTGATTCGCTTACCTCCATCGGGAGTAAGGCTTTTTCCGCCTGCAGCGGTATA

>NZ_CP042818|3|3|366571-366663|CRISPRCasFinder
GCTTTTTCCGGCTGCAGCGGTATA	GAAACACTTACGCTGCCTGATTCGCTTACCTCCATCGGGAGTAAG
GCTTTTTCCGCCTGCAGCGGTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024752944.1\|359963_360341_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889209.1\|360942_364578_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|350770
NZ_CP042818.1\|WP_148889208.1\|353154_353988_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|350159
NZ_CP042818.1\|WP_148884449.1\|367855_370123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889780.1\|367190_367376_+\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP042818.1\|WP_039943724.1\|355976_356192_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP042818.1\|WP_024752943.1\|358320_359928_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP042818.1\|WP_002700785.1\|350689_351514_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270338
NZ_CP042818.1\|WP_024752942.1\|356561_358193_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671
NZ_CP042818.1\|WP_002697368.1\|378142_378598_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752953.1\|379336_381100_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP042818.1\|WP_044634850.1\|372692_374441_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|273456
NZ_CP042818.1\|WP_024752951.1\|376247_378128_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|224034
NZ_CP042818.1\|WP_002697371.1\|375783_376155_-\|DUF3276-family-protein	unknown	unknown	gnl\|CDD\|197840
NZ_CP042818.1\|WP_002697373.1\|374440_375673_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NZ_CP042818.1\|WP_148884448.1\|370498_371992_+\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NZ_CP042818.1\|WP_002700784.1\|349990_350680_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP042818.1\|WP_148878599.1\|354370_355768_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
NZ_CP042818.1\|WP_002700795.1\|352129_353101_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP042818.1\|WP_024752950.1\|372263_372683_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_024752942.1\|356561_358193_+\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	4.44012e-59
NZ_CP042818.1\|WP_148889209.1\|360942_364578_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.26442e-99
NZ_CP042818.1\|WP_148889208.1\|353154_353988_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	9.15547e-90
NZ_CP042818.1\|WP_148889780.1\|367190_367376_+\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	4.48834e-25
NZ_CP042818.1\|WP_039943724.1\|355976_356192_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	0.00947415
NZ_CP042818.1\|WP_024752943.1\|358320_359928_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP042818.1\|WP_002700785.1\|350689_351514_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270338	cd13620, PBP2_GltS, Substrate binding domain of glutamate or arginine ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. This family comprises of the periplasmic-binding protein component (GltS) of an ABC transporter specific for glutamate or arginine from Lactococcus lactis, as well as its closely related proteins. The GltS domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.02359e-91
NZ_CP042818.1\|WP_024752953.1\|379336_381100_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	1.90195e-170
NZ_CP042818.1\|WP_044634850.1\|372692_374441_+\|protein-translocase-subunit-SecD	gnl\|CDD\|273456	TIGR01129, Protein_translocase_subunit_SecD, protein-export membrane protein SecD. Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking].	1.6472e-163
NZ_CP042818.1\|WP_024752951.1\|376247_378128_-\|phosphoglucomutase	gnl\|CDD\|224034	COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and metabolism].	6.8427e-37
NZ_CP042818.1\|WP_002697371.1\|375783_376155_-\|DUF3276-family-protein	gnl\|CDD\|197840	smart00712, PUR, DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.	7.77753e-14
NZ_CP042818.1\|WP_002697373.1\|374440_375673_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.41019e-86
NZ_CP042818.1\|WP_148884448.1\|370498_371992_+\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	5.09715e-67
NZ_CP042818.1\|WP_002700784.1\|349990_350680_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.30137e-80
NZ_CP042818.1\|WP_148878599.1\|354370_355768_+\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.78055e-113
NZ_CP042818.1\|WP_002700795.1\|352129_353101_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.18254e-47
NZ_CP042818.1\|WP_024752950.1\|372263_372683_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	3.85995e-30

>NZ_CP042818.1|WP_148889209.1|360942_364578_-|DEAD/DEAH-box-helicase-family-protein
MAKKEYGVTPWGAWFLEMLEAYNGTGRITRGKTYANTGKVDSLNIKENSVGARVEGRYEPWYYISIKFPALSGTNFKKLEVVFKKNPIDLVSLRAGTMSPNLLKQIKDKNIRLIPSYWRYIERDCTCPDSGDPCKHMAAVLYILAKEIDHDPRLLFQLAGVDLSKIEIADSAYGEAPDAEDSENDTPAEKSRAVQKESAFASGQEVRSKHPVPLSLRKPEQLQVHDGSADDQTDLTAQEGQIKTLDELLSNEQNLFSSGESYLTLITSMLPKETSFYSGNLIAAFTDFYHTSIKTLQRDFYLQNTALFGGSENENTLRRISYAQVRINDKELIQTAEDFPLKTKKFLTVNVILSGKTAHTFTLYDASLFFANVQPAADSPQSVKELMLFFKLAKKIINDSAFAPALLQENKRISLFWKALTASSEIQKAVAGFASIITEDFFAPVKVWGKAYSAEIILTVFLTEYVQRLRYTPRSYFTIDTNIVELFFSGAEINIQKPGLRNLGTVIENWLSVLHYANPDLSYRLVLRENSKDENFTLQALVLLKGKKVPRYVDLYKAYAIAENPDEIFHFPAMLSAYLPQLAELARKKSVVLTKDETASFLKNAAKLLTRFGVEVVLPKELQKALVPRPVIKVEKIKGAGPVQSYLGIEAVIQYDRAIMLGDTVISIPDFLALMKQSSSLVKFKDRFVLIDPEQVALMLSSIKKEKPSLSEVLQGTFTGESIFSDEIPFFNELKKETDILLPEGIQATLRPYQLKGYRWLYSNLQNGFGCLLGDDMGLGKTLQVICLCAKLKEESGLPEGILIVAPASLLTNWQHEIKKFAPQLSVKILHGKDRSFTAGTDIHITTYQTLQRDSKKITDKTFDCLIIDEAQAIKNANTKNAKALRSLNAKAKIALTGTPIENSLEDMRSIFDFLLPGYLGSAEAFKKKWRIPIELHNDIDTAENLKKITSPFLLRRLKTDPKVISDLPEKIISPQYCTLTPQQVAIYESLIRQQLKTALNAKDSIQRSAFIVKLLTALKQVCNHPRTYDKISPPDINLSGKMLSLIILLKEILTAGEKTLIFSQYTETLFLLKEIIKAELDEDCLLLHGQMPARKRQQNVTAFQTEPDKRIFLISLKAGGTGLNLTAASRVIHFDLWYNPAVEDQATDRAFRIGQQKHVFVHRFICAGTFEEKIDEMIQRKRAVSDKTLGTGETWIAKMSDEELDALFSI
>NZ_CP042818.1|WP_024752944.1|359963_360341_-|hypothetical-protein
MKTKKLFLVLFFALFALAAGVAENVAAKIAVYDYDENKLFEITDKKRYTSAATLTHLKVQYHYILTLQGDNGKTERVDLIVYKNYPHVTIIMLERSGTCIPQNELVELLHHPENFANIQNKSLKL
>NZ_CP042818.1|WP_024752943.1|358320_359928_+|CTP-synthase
MNTKFIFITGGVVSSLGKGITAASIGLLLKSRGLSVVNQKCDPYLNIDPGTMNPYQHGEVFVTEDGGETDLDLGHYERFTDVAVRKFNSTTAGKVYLAILDRERNGEYDGGTVQVVPHVTDEIQSRIMRAAEQTNPDIVITEIGGTVGDIESLPFIEAIRQIRYAVGKDRSVFIHLGLLPYLKECGEIKTKPMQHSVKELLGFGIQPDIIMCRSEKKLTQSVREKLSLFCNVDQDAIIENLTAKSIYEVPLMLEKAGLGKTICKLFHIEDTKPELTDWEKMLYTFYHPEKEITVALVGKYIELPDAYLSVSEALTAAGIYHKTNVKQIWIDAEKITSREEAEKQLKDVAAIIVPGGFGDRGVEGMVFTAEYARTKKIPYFGICLGMQVAVIEFARHVLHLENASSTEFQKHCEHPVIDLMPDQQGVNLGGTLRLGLCTCSINQNTLTEQIYKQHEIRERHRHRYEFNNIYRTQFEESEMTLAGINPERNLVEIIELKNHPWYVAVQFHPEFASRPNRPHPLFREFIGAAIKQAGV
>NZ_CP042818.1|WP_024752942.1|356561_358193_+|sodium:proton-antiporter
MEHFGIWGIIPPVLTIILALVTKDVIISLFLGVFSGVLIVAGGNPLVALINATDLLAESLNDGWNIRIFLFCAMLGGLVGLLSKTGAAVALGHWTATKIKGRKSSLLTAWFLGLIVFIDDYFNSLAVGTIMRPITDKQRISRAKLSYILDSTAAPVCILAPVSSWVVTVMSVVKASDGFTHLGISEFEFFLRSIPYNIYAILTLLMVVVLSVTYRDFGPMKESERLAMEKNILFNEELYGAAGGDVPAETNPRAKAVDMILPIVVLIISAVFFFPFTTWMRAIDGEKIYSVSEAMASMSLSTAFVETDASVALFYASIFTVVFTYIYFIARRLLNLHTASAALKDGIASMVPALIILTMAWTIGTVIRATPDEGGLGLAKYLAQIVTEGHFPFWLLPAVMFIVSALIGFSTGSSWGTFTIMIPITIPIAIALAEIHGLQMSSLLNATMISVAAVLSGAVFGDHASPISDTTILSSTGAGCPHLEHVTTQLPYATFVSACAFVGFLVGGITLNPLIGWVATLIVFTIGMIFLPNILSGKLKVKK
>NZ_CP042818.1|WP_039943724.1|355976_356192_+|IS3-family-transposase
MLRMESFFATLKKELLYRIDTTKMMREQVKTLVWQYTMVYYNRKRISTVNEDGLPPTLYRLKVTKKKNGVA
>NZ_CP042818.1|WP_148878599.1|354370_355768_+|MATE-family-efflux-transporter
MLYMSILQKQTTAERRELILHSAPVKTLIILSLPTLMTSMVQALVPLTDNLFINNLTNVITASAVSFSQPIILMVTALSMGLGVAATAIIGQLNGRGEIETARKISTQIFIFSCALGLAAAPVLLVLSKIVEKSLVSDIAHSVFLYLSLYSIVLPFAFLEAIYNGIKNANGKPEAPFIRMVILLILKIIGNFIFLYELRLDIVGCVLASLLANGIITLWMFFELFFANGPDTLTLKGFHFEWHVIKQLIKVGFPAMLNFAFLYFGFFLINKEVERYGPVVLNGQNIASAITTICFNLPAAFSAAVTTMVSMYIGAENKKKAQRSCLLGCIASAITAVALIAIIVPLSPHLTILFRREPDILEVANNALHIYTYSIVGFGVCMTIQGAFIGLGKTKIPLVLGILRIWLLRYVFILFTVKTLSYYAVFWGNLFSNYCAALIAIILILNTKWKSDINLNPGESLTTSQ
>NZ_CP042818.1|WP_148889208.1|353154_353988_-|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MISIIKNTARADILKIGKIACCGNRGISIYLHDGGADMRIGIFGAVQQEVALIQEQLQGSSIQKANLIFYEGKLHNHEIVLVCGGVGKVNAALCTQILISEFKVDALINTGAGGGTADNIEVFDMVISTDTVQHDVDATAFGCPRGLVPNMDSAFWRADENLRNVAMKAFALCKEQYADEMKNCEQAVEGRIASGDIFVADAKLREKIIKEFEPLCVEMEGAAIAQTAAVNNVPFIILRCISDNAGKHASAKIAYDEFSKEAAKISALIVLEMLKLL
>NZ_CP042818.1|WP_002700795.1|352129_353101_+|NYN-domain-containing-protein
MEKNYALLIDGDNISPRYLEAIVNEVSKEGEIQIKRIYGDWTTVNMNGWKSLLAKIPVRPVQQFRYGDNATDNTIIMEAIELANNNKNINAICIVSTDADYYSLALKLREYGLYVLGIGRSNAKDIWVSSCNEFKYLENLDDDDNDGSAESSEEIDSLEKLLQHAYKNSRMTEEGWVSLSDLGKSIRNSMPEFDPRTYNHSTLREIVEALSDNFDMKSDELVPPNYWIKAKTVAEPAKRLNGAIKRFKEKDHWGVIENKEYGLFQFSYTNLCKDSRRNSLAEGTPVTFSVFRMPNPKAETLEKRNGRASNVKVVKPEKPNVKT
>NZ_CP042818.1|WP_002700785.1|350689_351514_-|transporter-substrate-binding-domain-containing-protein
MKKIIQGIALFALFFIPVACGGGEKKSKYTSIKEEGKIVLGTSADYPPYEFHLQKDGKDEIVGFDISIAKEIAKDLGVELVIKDMDFDGLLAALATGTVDMVLAGMTPTPEREQNVDFSNIYYIAEQGVLIRSADAALYGSSSESLKDKMLGAQRGTVQVEIAKKEIKGVAEKDLEDPHAQIKELAKIPDIVMELKNKKVDAVIMELPVAESYQQAHSDLTLAAYTFKDESGGSAIAVKKGENELLDVINKTIIRLKSQGKIFEFVTAANELVE
>NZ_CP042818.1|WP_002700784.1|349990_350680_-|amino-acid-ABC-transporter-permease
MNFSFLAKYWLYYLIGIKNTVLLALFTVAFGVLIGIVLVLGRISKQKWLRFISTAYVEFIRGTPLLVQLFIIYYGLPALGIKFPNNKLLSSIIGMPFSDFIPGVITLAINSGAYICEIFRSGIQAIEIGQTEAARSLGLSYRQTLRLIIFPQAFKTALPTLGNEFIAVIKESSIVSVIGIADLMYKANVIRGNTFLPFEPLLIAALCYFLLTYPLSKLLGYIEKRMKYA
>NZ_CP042818.1|WP_148889780.1|367190_367376_+|Txe/YoeB-family-addiction-module-toxin
MNRIIKDIQRNHYSGIGKSEALKGNLNGFWSRRIDEKHRIVYREKDGSIIIASCKGHYEDS
>NZ_CP042818.1|WP_148884449.1|367855_370123_-|hypothetical-protein
MSKSNPLLLDFLFSLVQYLFEEYLFMRKKDALSHKWKFARFGGVTQVMLTEGDDIANLRELDQKLWTVLAMPIKGIFFNEKTAELLDSDKDGFIRPLEILEAIDWICAQLKDPGLLTEEGDAVPLDAIKNEKLSLSAHWLLQQINKRSATEITLEDIYTQKKIFDENILSKKTEVSADEPDEQKLAKLLRKLILSFAANTTDNETIKQNVIDSFFAQVNDFVAWHTSLFENTLLPLELAETEKALAAFDAVKNKIQDYYLRSKLSEYQPGLSSVLIANAENLQSLATKELTDTNEDISILPIAALSSTRELPLQRGINPVWKNKMRTFYSDAVKPLLGDKEFLTEEEFNTIASKLSPYREWIAAKPASDVSCLSYQYLTELLSGAHADIIQTFIQNELITETERANLNDLEKLVLFRCYLYTLLNNYISFTNFYEGKGSVFQAGTLYFDSRSAHLCFELNGDARHASLDALSGAFLVYCDLSRQGGHTKKIIALFTNGDSDSIVVGRNGIFYDRDGKDWNATITKITVNPISVRQAFFMPYKKLITMIETQIAKRAADAEEKTAGKLSLTAEKVVTADKQENKDVPLVPKKLDLGTIALIGTAVGGVSALVSGILQVLFGLGYWIPLGLLGILLCISGPSMILAALKLRKRSIGSILEANGWAINAQTRINIPFGASLTALAELPKNKTLAPIDPFADKKTGRKIALLLFIIALAAAGFCFLYFYKKVNFLRVFTKQNQTIEADEKAGSAKPSPE
>NZ_CP042818.1|WP_148884448.1|370498_371992_+|HDOD-domain-containing-protein
MQEMKKIVVDSAKIDKAIGLGIPIAITTDTLPKEIEAYISEVITVFLSKIYQSQIKEYVIYILKELTTNAKKANTKRVYFKEKDLNIFSPEDYEIGMQTFKKDTLENIDYYLDLQKDSGLYIKVSIQLKNNSIIIDVANNAAMAPAEFKRVFDKKVKARQYTDIDEAFMQVIDDTEGAGLGLIIMILMLKKMGLSEDSYDLITQKDMTISRVIIPRDIEIQQQVKKLTKTIVNFIDEVPQFPSKLMEIQRAINNPDVTMSEIADLISGDVALTTDLLKQVNSAAFGLNKECMNIAEAVKLLGLRGIQNLLYSIGVIQTLHTATDEQKELWDHAYQTAFFSYNLSKLTGKRSLMEDAYVCGLLHDLGKIVFSSIYPDTLVKLDNFKAQKNIPDVAFDIVMSGMEHSEIGAALAQKWNLPLPIINTIRYHHNVEASPPEYTTLVATVALADMMAYFLQDSISLEQIPKNILSICKITSIDDFVKLAEMFNRRFHKEKEA
>NZ_CP042818.1|WP_024752950.1|372263_372683_+|preprotein-translocase-subunit-YajC
MNFIPLLQAAQGGSWIMMVSLGAVIAIFYFFVIGPQKKEQKKTQEMINALQKGDKVITIGGIHGVVSSAKDKTVIIKVDDNCKLEVNRTAIGTVIADEKRLKEMKDAEQAAPKFSLFGKKKAEPKAEEPKEEPKCPDFR
>NZ_CP042818.1|WP_044634850.1|372692_374441_+|protein-translocase-subunit-SecD
MKKRTRFIIILAILGLCFVFLHPTLKWYFWTDKAEKALALGSREKIKDYAVNMAAKDVKDLIALAKQGSEDDLSARYAPLIKEAKKNLKLLGKKSPSKWTAVAIVSAFPVKSEKDLPPLIEPIIEKYYRDRILAIKENQANAVKLGLDLSGGMSIIIKADLTAVTKGLSIAEVGQAKKDAMKLAIDTISGRIDKFGLSEPVIRQQGEDRIYVEIPGAADTDRINSIIMGRGLLAFHIVDDEATQKFFDYYTANPGSTFDADYNLLDPSIIPENTEVLGVYHKDAYGLDTRDGFLAIKKEPALAGKHIKNVTVGAGRTNEPLVLFELDTEGGNIFSDVTTKNVGKRLAIVSDQKIKSAPNIKEPITGGSGSISGFNADEANNLKTVLRTAWLNVPLQLENQQVIGANMGEEGINQGKRALTWGLVAVLAFMLLWYLEAGINACIVQVLDLYIMFSVLSAFNLTLTLPSIAGMILTIGMAVDANVIIFERIKEELAIGKSREASIAAGFNHAFWAIMDSNITTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSRLIFDFGTEILHKQKIRISWRQLA
>NZ_CP042818.1|WP_002697373.1|374440_375673_+|protein-translocase-subunit-SecF
MKKVIQFSKLFLPLVIFSVVVILSGIIRWATAGINFGIDFQAGFIEKVKIAPPALSIIYNGAKTMTFSQDAKQIDIVSTSVDSENKTHRFPYTEYTTVKAFADAVNKIEGFSVELKAPADTPLQEVFADSQASRLSPAAVLLHYVPSGMAVKDADEIRHALASVPSASVQQVGLPTDHTFQIRLADDGTHENAGEELRQMINSALGKAYGEDNIAVLSTDFVGSRFSNSLARQAFLLVMGALVLIFLYAAIRFQWRFAFGAILALIHDALIMITFIVWTQMEFNSTTIAAILTIIGYSINDTVVVFDRIRENIRINPKITTVDILNLSQTEVLSRTIVTTITTMLAVLMLYIFTSGSMRDFSAALLVGMLSGVYSTVFITSAFIAFTGKNQRGEEILKTQKSSGASGTVI
>NZ_CP042818.1|WP_002697371.1|375783_376155_-|DUF3276-family-protein
MGIRGELFTTEVSAENRTYFFNVKENRLGDVFLQIVESKNTDGAGFDRHAIVIFEDEMQNFLQGFEQTLGFIEKNRKERLKTKQQRRSKEKPISSKKVVKRDSSAAATQKRQKTVKAIKKEKD
>NZ_CP042818.1|WP_024752951.1|376247_378128_-|phosphoglucomutase
MEILQIKQLVSEDVFQKQLEKAFSELILSASGWRKVFAQSGNEEDSTESITAADAIITVHAAMSFAQFLRQHEPAAKHLVVGRDSRPTGKIIAALFVAVLLAEGFEVVHIGIAAAPEIMSYARTKDAFVYVSASHNPIGHNGLKFGLNTGGVLAAEQSAVMIQTFKQACAANNAVQTARNILQKIDEKKLQAVFSHTEQVKQESLAEYTAFSKEVIAGSADKNIQNDFFHLCKRAAKDADRAGQPFALLADFNGSARAASIDRSFFEAIGIELFSIAEKAGDIRHRIVPEGESLIPCAEQLEKYIKTGSSAAEKHIILGYMPDCDGDRGNIVYFDQEAQKVVIPEAQSVFALCVMAELAHIRLTEDAANASPAKLAIAVNGPTSLRIDEIAAVFHVEVFRAEVGEANAVNLARNLREKGYTVRILGEGSNGGNITHPAAVRDPINTIFAILKLLLLRGDEGKKGLFEFWCSCAGKQYKQDFALADIFASLPEYSTTPANEQRALLKIKTDDHGLLKKRYQKLFEQYWKEKKEDFKTTFGIDSYRAIITNGTIEKKDVSDFSLSGKGGLKIQFYNEKKEPIAFIWMRGSGTEPVFRILADVKGENRETEAELLKLQADLVLQADQTG
>NZ_CP042818.1|WP_002697368.1|378142_378598_-|hypothetical-protein
MKHLKQISCLFLFGLVCISCASAPKLKGHTWKASIPLSTIVKASPAMTEQQQAIYEKLYIDCFFYFSDNIHFRKSFALSGESLAILSPEVQERIQYAIQAELPATSGLYKAKKEELTLSSENVLIIANISKDKQSFSFTDDGFLFVFRSTN
>NZ_CP042818.1|WP_024752953.1|379336_381100_+|phosphoenolpyruvate--protein-phosphotransferase
MVKLTGLSTSGGIGIGVVFCPEEKNQISIPYYKITKEDVPAQVDKLKKALTQAQKDTFALLEKLKAKKPDSFEYEILNTHYMMLSDENFISTVIEEASTKEINIESALQNKLKETISFLTESEDPYLQARAVDIKDAFSSVFEYLILSGKNLASPFDNIPQNAIIVAKLIKPSDAIRIKNAHVAGIVMEEGGATGHIAILARSWGIPMIVGVDQCTEKASGKTTAIIDAGEGLVIFDPSKELLAEYTKQKENMKADQPVFQNNTGLYETTSKDGVTFHIEANIALAEEVSQPAMQFADGIGLFRSEFLILDNGNIPSEESQYQTYQFLLKQLKEKPVIIRTFDIGADKTIDGQAALAEKNLLLGLRGIRYCLEQREVFKVQLRALLRAGVAGNLFILLPMISSVSEIIEVRNIISAIESEFNQQNIPYKKNIPVGIMVEVPSVAVAIDLYAPHVDFMSIGTNDLVQYTLAADRENAKVQNLADYFHPSVLYLIENVIQAEKNIRYSKGFVSMCGDMASHEEAVFLLAGMGLRNFSMPIGQIPAIKTLLSKISVAEAEKVYQACKTVNTPQGVRAIIARDLCRRDCVC

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Crispr_ID: NZ_CP042818_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_4

1162831-1162916

Orphan

Consensus_repeat	Method
TAAGCGGCTTAACAAGTTTGAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP042818_4

>merge|NZ_CP042818|4|1162831-1162916|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAAGAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACGTAAGCGGCTTAACAAGTTTGCAA

>NZ_CP042818|4|4|1162831-1162916|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAA	GAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACG
TAAGCGGCTTAACAAGTTTGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148889344.1\|1166947_1167991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889348.1\|1170203_1171163_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP042818.1\|WP_002695065.1\|1151950_1152640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148878799.1\|1154426_1156040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002696987.1\|1160293_1161310_+\|phage-type-endonuclease	unknown	unknown	gnl\|CDD\|227668
NZ_CP042818.1\|WP_148883932.1\|1163543_1164116_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP042818.1\|WP_024751669.1\|1171168_1171465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148879529.1\|1168788_1169088_+\|DUF4406-domain-containing-protein	unknown	unknown	gnl\|CDD\|379581
NZ_CP042818.1\|WP_002695076.1\|1157109_1157883_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|272852
NZ_CP042818.1\|WP_044634969.1\|1159206_1159590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889346.1\|1168004_1168784_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP042818.1\|WP_002696692.1\|1165142_1165946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753321.1\|1156100_1157105_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP042818.1\|WP_044634970.1\|1159722_1160109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148884013.1\|1152647_1153274_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP042818.1\|WP_039943848.1\|1153301_1154402_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP042818.1\|WP_148879530.1\|1169091_1169418_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634971.1\|1161325_1162606_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|213207
NZ_CP042818.1\|WP_024751671.1\|1169964_1170204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751741.1\|1164164_1165127_+\|DNA-recombination-protein-RecT	unknown	unknown	gnl\|CDD\|236628

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148889346.1\|1168004_1168784_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.18033e-18
NZ_CP042818.1\|WP_148889348.1\|1170203_1171163_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.47651e-67
NZ_CP042818.1\|WP_024753321.1\|1156100_1157105_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	3.30783e-129
NZ_CP042818.1\|WP_002696987.1\|1160293_1161310_+\|phage-type-endonuclease	gnl\|CDD\|227668	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair].	5.95391e-31
NZ_CP042818.1\|WP_148883932.1\|1163543_1164116_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	9.73549e-23
NZ_CP042818.1\|WP_039943848.1\|1153301_1154402_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.10677e-64
NZ_CP042818.1\|WP_044634971.1\|1161325_1162606_+\|AAA-family-ATPase	gnl\|CDD\|213207	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.	9.92236e-06
NZ_CP042818.1\|WP_148879529.1\|1168788_1169088_+\|DUF4406-domain-containing-protein	gnl\|CDD\|379581	pfam14359, DUF4406, Domain of unknown function (DUF4406). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.	1.05077e-09
NZ_CP042818.1\|WP_002695076.1\|1157109_1157883_-\|TatD-family-hydrolase	gnl\|CDD\|272852	TIGR00010, Uncharacterized_deoxyribonuclease_MG009, hydrolase, TatD family. PSI-BLAST, starting with a urease alpha subunit, finds a large superfamily of proteins, including a number of different enzymes that act as hydrolases at C-N bonds other than peptide bonds (EC 3.5.-.-), many uncharacterized proteins, and the members of this family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. [Unknown function, Enzymes of unknown specificity].	2.22762e-109
NZ_CP042818.1\|WP_148884013.1\|1152647_1153274_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.76268e-23
NZ_CP042818.1\|WP_024751741.1\|1164164_1165127_+\|DNA-recombination-protein-RecT	gnl\|CDD\|236628	PRK09846, recT, recombination protein RecT.	1.9468e-74

>NZ_CP042818.1|WP_044634971.1|1161325_1162606_+|AAA-family-ATPase
MLLKNIEIRNVRKIKQAEIEFHGAGVQVIQGLNKSGKTTIAQSIALTLGGSKDFVPGMISVGEEQAEIIAYTDDELKIRTLIGEKVTQDVSRLDELTGRYAKVSGGVRAFLDSIRSGLEMPFAIKDWTDESIIELLKERTGTSEKIALIDEELKRLEEARTQTGRDKKRLGTPTPVPKVEHAKPIDELQAEKEKAQNFLSTLKNAFSNINQEMHTLNIESESDIDAAIQRLELAKENLHKWLSKNHKQYSKEDIAEIDAAILEWNKNETAANAYDAYIAACDEIKKLEDEYNGLTKKIEAKRQERKDTLASMDLGVSGLEINEDNQLVHNGAIRGITKTNTIGNWSTAQSIQVFFSLGVRFSGEMKVMVVDNAESLDEAHTAIISEWAEKSGFLVIMLKVGDVPEELEEGIIYLKNGEVVANEYRI
>NZ_CP042818.1|WP_002696987.1|1160293_1161310_+|phage-type-endonuclease
MENLVKQLLGKDTNYVFTKSMAKDEWRNARRSSIGGSDAGAIMGLNKWASPLTVYLDKKGLHSFEGNMFTERGSWLEDPIRQRCREEFGVLIEEVPYMFYSGEQKFMSANIDGLIYVQEPKTISGIEVSGLGGHEIKTSQRGDGFGENEIPDSYFAQVQHYMSVLNLDWFVLSAYIIDKNELRHYAINRDEAFITRLVKAEKTFWEDFIEENIMPAPSGVDAEDEAIAKMFEGAENTIILDGEAESMSAEYLLINAQIKELEEKKSKLSSSLKLKIIEQQTNSEEKKAKAVAGKYNLSFSKSIRRTVDSEKLKKDGLYEQYLKESEVAMLRITEPKAK
>NZ_CP042818.1|WP_044634970.1|1159722_1160109_+|hypothetical-protein
MSEPITKVSETISFEDDCTFGNVETKLSNGWTVTQKFSWSFDSYYEPEIDYQCEDVGDLSIFDKNMEPYSNELTSEEEKALARLCIKDADELTDAVYQQTDWKSLAEEVREYNKNPYSYYGVTPLDFI
>NZ_CP042818.1|WP_044634969.1|1159206_1159590_+|hypothetical-protein
MNIEEIKKLSLNRRKTIAKSEKTPQNILLSLAASDPHRYVRGAVAENINVTADILEILLEDDDLYVRNKARERLGLFKLRLSEEREKTIEEKAEDIEDECDCLADFEARKKEQERWAKGAEICIPFK
>NZ_CP042818.1|WP_002695076.1|1157109_1157883_-|TatD-family-hydrolase
MQIFDTHAHIGLIHSDPIEQLRVVQEARRASVTRILSICNSLHDFAIVYETLQVSSSVYHAIGVSPSEVTAPGKDWIQTIEKGLSLPNVVAVGETGLDYCKKYGDKRSQIELFITQLDIASKAKVPVVIHNREAGKDVLDILAERIPDQGGIMHCYSEDAEYARLALDLPVYFSFAGNLTYRSARNLHETVLTLPLDRILVESESPFMPPAVYRNKRNKPANTVKTVEFMAELLDMDMEELAAQLWKNSCTIFNIPE
>NZ_CP042818.1|WP_024753321.1|1156100_1157105_-|tRNA-dihydrouridine-synthase-DusB
MYTKTLYRPVRIGKLQLKGNLFLAPAAGYSDVTFRSVAVEWGADFTYTEMVSSEAMVRDSQKTENLFKRAPNEQAYAVQIFGSNPNHMAETAKKILEKASPSCIDINAGCPMPKITKTGAGSALMRNPQNLYTVTKAVRDAIDTVNISVPVTVKIRSGWNTEHLTWKDAAQAAVDAGAAAITIHPRTASQCYGGKADWTILAQLAQMLHPQGISVFGSGDLFTPEDAKAMLEQTDCDAVMFARGAMGNPFIFKRTKELLLHGSYADISFERKLKTGWDELLILTQELGEERACKEMRKRFAAYTKGLEGGAELRKDFVKASTIEEYKSILSMAL
>NZ_CP042818.1|WP_148878799.1|1154426_1156040_-|hypothetical-protein
MKLISTIIESIRDFIEAIFFSSSPEYQVIRNLRLIMHEIRQIQPQVYRADKTLLPGFASGLFQLFGFIQPLKEILEKTIHSKDIRIATKSYDLLFDELLSPTENELQQSFAIKNRALEFEGLTGESFEKKLQDQSKTFKQFMQLFENEKYKQKNMQVKNLSVFSDFCNFDFITLFAAFDPQFLNINEKKLPITPRFREVKADTIVQQLLDFNYLFKNLIFDDALVYSLALLAKKNTKESIENIQSSISKNLTTIKNFFEKKLGVHTIANILKHIKNDPDFTDKTPDISVNYLEEYVQRQISQFNADSKKLLRIQQENKITDLVIKTFGTASLIPLEGYTDSINEALQATTTLSLDWVRPLEIIHTFTQNHFEIYCKPFLRELLIEGFFLDKQFQMRLSSSYYFCESINEKLSAFESLFKENGSCSVRIIQGYISELENGGDFEKALQKIINTANAQAKYLMQKIVTQYTELFNASIMILDDTKKILPEYISNIKALVTSQKNKDSYKSFEEEIECCRNFLEIMKNYAILGSIEPSAS
>NZ_CP042818.1|WP_039943848.1|1153301_1154402_-|GGDEF-domain-containing-protein
MDEKMNEQNKLMQYNEKFEPEDLSFEKVPQEKQIYDLKQLLEISKSLNSMMEFDRLVEAILYTSMAQMKTLGAALFTKKTFDSDGFILNRNYYGFETDPDRTYSIEKNHAILELLDEENYCLTPAQLKQLVPHDEILETLLALHPSLFIPFKAKNRLVGFLLLGEQINAGEDYTPYEKEFIMSIASLAAIAINNALLLERSTTDMMTHLKLKHYFYTVLNEKADTLPDDTPLSILMLDIDFFKKINDTYGHACGDLVLQQVAKIIQSCTRTGDMAARYGGEEFIVMLYNTNSKEAQKIAERIRTLIQDLSIQYNEFEVRVTISIGVATFLQKMESLKNLLERADIALYQSKENGRNRVSISAENLP
>NZ_CP042818.1|WP_148884013.1|1152647_1153274_-|rhomboid-family-intramembrane-serine-protease
MKFLRKPFKYVYWNAGFTLILINTIVFALTSLFKTLTPYLALIPLYVTHGHMYWQIFTYQFVHGGFWHLLFNMLGILFFGVTVEKQMGSKEFLLFYLLTGTLCGLSSYFIYSFVGFQMIALVGASGAIFAVLFLFAVMFPNAQIFLWGIIPIPAPILIIGFELFEIFDLLFSSDNVAHLVHLLGFFFAWLYMRIRFGIKPLKVWNIVR
>NZ_CP042818.1|WP_002695065.1|1151950_1152640_-|hypothetical-protein
MKKGLFLFTCILFSSLVYADSYSGASKTEFLVLRAPVWVFLEAQPGTMKEGEGEKFLPPVQALRELAAFIMSGMSYGWQFSYTPYDKKRNVTENFELVPISAVSPKTKRLRLMEPQVRYPYLYCWSEYTLFEDEARRREHWMSISFATVQGSGNGERKKELSGVYDAYKNAALQAVRNYVRKREKNKPKEIIGEMIIRENPRLFVDSGKFTAEIRVNIYIKEIIPYTIF
>NZ_CP042818.1|WP_148883932.1|1163543_1164116_+|3'-5'-exonuclease
MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVPCERLFKLNPLNETILYHEEAAKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRCGLTLADYFSKQFDALKFVKKATRQKAIPRLENLKLGTVCKSLGVNLENAHTALADIQATQALCIELFKRGVKVE
>NZ_CP042818.1|WP_024751741.1|1164164_1165127_+|DNA-recombination-protein-RecT
MNVNNTNKNQVTAKTKGGDLRSMIMANMDMFKMALPKAITPERMTRIAMTAVTRNPKLALCNQNSFFGALLTAAQLGLEVNTPLGQAYLLPYDSKNGLQCQFQLGYQGMLELAYRSGQFKRIKAVVVHEGDEFTYSYGLNAILEHTPSGNGNPTHVYALYELTNGGVDFEVWTWEKVMQHGMTFSKSFGNGPWQTAPEEMAKKTVLKALLKYAPKAVELAEAANLDEGIIDKKLVRNDGIAEIVTNIEYTEPVQQQTAVQYAEQDPVNANGKTRSSERQKSGAAAQMSKEQQMANEDEQAIEKFELQQNAMFDIAPEFPM
>NZ_CP042818.1|WP_002696692.1|1165142_1165946_+|hypothetical-protein
MKVTGQYLARKVYSNNVHFVMLKIDDKKQADLLDTLFKRKAERDARAGHESLLNVSFNLQYREKSYKQLRTVFALVTAIFISMDGRLPTEEEKYALYLDLLDVYALKTPSKIKPDTLRTIHLSESNTFEAAHFINGLMLHLATECDLDLDLQSDVKNLLWEWELHRGGEEKDPLDYYDTECTQLISEADWRELHQYSEASGLHEAIHLHHIVTRGANAAAIDKAWNWCALTSDEHEQLHHYGEKAFLKKYPHLEGKFKRAHRMAGKL
>NZ_CP042818.1|WP_148889344.1|1166947_1167991_+|hypothetical-protein
MKSNFKSCIFSETTKKQIDAMTDINMKLRFYEAVTNYGIYGIDPDFEGIDLLIWIPMKDIIDNATNKRGAPVGNANAKKANNKTSDSDTEQEKQIKYNETKKLPKNIESNSEQKKQMDLIENKENNSKQEKQIKQLNSIKTNKTIRPNDNDNVNVNVNDNVNDNVNHPPPEDTAGQDIYTCSDKQEDEEVFSDFSENENLIQLAKDIYGVFVEAGINKPNTFLLFLQRDFQLGLDKLREQAIPVTPDILAACKNYAKVLALKKQQATWWNFTGGFDGFCGKNIILKFLPERFTLTQFEKNNRSPQAEKDYSKQDFSQSSIDEFFGKPQPPPQVVSADVGDELEGVMF
>NZ_CP042818.1|WP_148889346.1|1168004_1168784_+|ATP-binding-protein
MRVLKQGKWQQVNITQSFLPDYLRQSKALCKTHGEYKCLIDTRTNETSPCPLCEQERKRAELETQKELEQFEARLKKIDGLPKRYRNAGFKNFVVDEKNKTARDSVLSFAKNPNNKWLLLLGKNGTGKTHLAHAVLKLTGGIFRDFDDVSTDLLDAQAGYGEGLNKTLDKYANAPMLVIDEIDKVKNTEGRITWLNTILRRRYNEMLPVVLVGNIDLERLCQIIDLHGGEAMRDRIKELGIVVNFNFESYRPVLRNEKE
>NZ_CP042818.1|WP_148879529.1|1168788_1169088_+|DUF4406-domain-containing-protein
MKQIYLSGAISNNPNYKQDFETAYNKLHKAGYSAILNPVKFCEGLKTWDDCMRKCLFILSRHKNLGIAKIETPYASNGAELELQIAEALGYEIYERKEN
>NZ_CP042818.1|WP_148879530.1|1169091_1169418_+|hypothetical-protein
MIFGESYNLIQQAIASHSENKLNKCVLCDCYQAYALMKTHIDEANKHVNRANMEFDYYWEKVKEMKTNEQKRFLKDVKDNAEIIINELVCVIALIEKSEKQIYGGENE
>NZ_CP042818.1|WP_024751671.1|1169964_1170204_+|hypothetical-protein
MKQLIAATKKHGETVKSIAGQKESTIVGMTLNNRVIIDKSFSQSFGQPYGDKVSCTTEELLDNFVFLSDNSPCGELVES
>NZ_CP042818.1|WP_148889348.1|1170203_1171163_+|DNA-(cytosine-5-)-methyltransferase
MTYLSVCSGIEAATVAWEPLGFKPVAFAEVEEFPCEVLKQRFPQVPNWGDITKYEGWENEAVDIVVGGTPCQSFSIAGKRGGTNDLRGQLMYCYLEIVGKYKPKWVVWENVPGVLSSGNGLDFASFLAGLEKLGYGWAYRVLDAQYFGAPQRRRRVFVIGHSDNRTDLAAKVLFEPEKPRTSFEASEDKKKEITGTLTTGFGARVFDCDTILNNQFAVESYTLSSFAQYKEGVGTLKASGGDFGGGSETIIKEGNSIRRLTPLECERLQGFPDNYTQIEWNGKPKDQCPDSHRYKAIGNSMAVPVMRWIGERIKRIEGA
>NZ_CP042818.1|WP_024751669.1|1171168_1171465_+|hypothetical-protein
MSNPKDQRRCALATSGGVCEVCGRPLNEGQPQGAHRIGNTKANRAKYGDFVIDHRLNMGMTCSLKCNGLLDISKDTGEVVKLCKKIYEIELQKYEGQK

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Crispr_ID: NZ_CP042818_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_5

1346332-1346395

Orphan

Consensus_repeat	Method
ATTTCACCCCTATATTTTACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_5

>merge|NZ_CP042818|5|1346332-1346395|CRISPRCasFinder
ATTTCACCCCTATATTTTACCGATGTCTTTAATCTGTGATAATTTCACCCCTATAAGTTTTCAA

>NZ_CP042818|5|5|1346332-1346395|CRISPRCasFinder
ATTTCACCCCTATATTTTACCGA	TGTCTTTAATCTGTGATA
ATTTCACCCCTATAAGTTTTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_044634354.1\|1341827_1343156_-\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NZ_CP042818.1\|WP_002699885.1\|1348686_1349373_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP042818.1\|WP_002695817.1\|1338588_1339524_+\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NZ_CP042818.1\|WP_148878815.1\|1343247_1344405_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042818.1\|WP_024753392.1\|1352513_1352975_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP042818.1\|WP_024753388.1\|1340578_1341607_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP042818.1\|WP_081718823.1\|1348168_1348489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|307151
NZ_CP042818.1\|WP_082048175.1\|1334878_1337458_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP042818.1\|WP_002699896.1\|1354804_1356025_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938
NZ_CP042818.1\|WP_002697839.1\|1332879_1334751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889399.1\|1353517_1354255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753386.1\|1337954_1338287_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753394.1\|1356718_1357891_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NZ_CP042818.1\|WP_024753387.1\|1339520_1340222_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP042818.1\|WP_002699887.1\|1349428_1351684_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236637
NZ_CP042818.1\|WP_024753391.1\|1344446_1344944_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225814
NZ_CP042818.1\|WP_002699889.1\|1351680_1352514_-\|carbon-monoxide-dehydrogenase	unknown	unknown	gnl\|CDD\|224238
NZ_CP042818.1\|WP_148878728.1\|1346459_1347713_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379256
NZ_CP042818.1\|WP_081718821.1\|1337647_1337839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889793.1\|1358108_1358669_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223394

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_044634354.1\|1341827_1343156_-\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	4.03124e-74
NZ_CP042818.1\|WP_002699885.1\|1348686_1349373_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	9.16261e-78
NZ_CP042818.1\|WP_002695817.1\|1338588_1339524_+\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	1.55192e-111
NZ_CP042818.1\|WP_148878815.1\|1343247_1344405_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.17877e-33
NZ_CP042818.1\|WP_024753392.1\|1352513_1352975_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	1.06768e-62
NZ_CP042818.1\|WP_024753388.1\|1340578_1341607_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP042818.1\|WP_002699887.1\|1349428_1351684_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|236637	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional.	3.73221e-170
NZ_CP042818.1\|WP_082048175.1\|1334878_1337458_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP042818.1\|WP_002699896.1\|1354804_1356025_+\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.36927e-100
NZ_CP042818.1\|WP_081718823.1\|1348168_1348489_-\|hypothetical-protein	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	8.40572e-05
NZ_CP042818.1\|WP_024753387.1\|1339520_1340222_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	6.6686e-143
NZ_CP042818.1\|WP_024753394.1\|1356718_1357891_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	3.59469e-131
NZ_CP042818.1\|WP_024753391.1\|1344446_1344944_-\|hypothetical-protein	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	1.30833e-11
NZ_CP042818.1\|WP_002699889.1\|1351680_1352514_-\|carbon-monoxide-dehydrogenase	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.53378e-51
NZ_CP042818.1\|WP_148878728.1\|1346459_1347713_+\|ISNCY-family-transposase	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.62756e-09
NZ_CP042818.1\|WP_148889793.1\|1358108_1358669_-\|hypothetical-protein	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	1.962e-08

>NZ_CP042818.1|WP_024753391.1|1344446_1344944_-|hypothetical-protein
MLVIAVFYNTLIYVSFMFLTVYLLFKIKPIKDTVMTSCQSAPEWAARIGVIIVFSIANMLVSKFSFEANGALVNIRTGITLVGTVLFGIIPGFAISISGGLFRYSLGDWSALPCCVAAIAAPIAPAIFIYFFKKKNAEFTFIIISILSLIAVFWEVIHLLVLLPT
>NZ_CP042818.1|WP_148878815.1|1343247_1344405_-|methyl-accepting-chemotaxis-protein
MLLLPMALSNFIFVFTTLTLTHDLRQQTNIRGIQENERFLRERATINSGVLKDVNAGLDALSEHGDVLYEQMEVTGQSIHHINIGIKNFEEKLQTHGVTVGETKTELESIIQRIKNLDTDITTQAESLQRTFAFLSEMIAKMDMTGKHFEESRQVIQSLYEVAINGKQAAASVNTIVLQIVEKSEGLLQASSIIQNIASQTNLLAMNASIEAAHAGDSGKGFAVVAGEIRKLANETTIHGMEIAKILKETSEIINALKDSGKMAEQVFGSVFNLTEQVSNRENLIMQEIHEQSKHSAEILKVTEEMNSITKGVKDSSLKMLNGSDHIVNEMRQLDDIAKNLTSSMEEITRQVNSINDAAKDVEAVSEANKKSINTLTNEIRRFQL
>NZ_CP042818.1|WP_044634354.1|1341827_1343156_-|divergent-polysaccharide-deacetylase-family-protein
MLLKKPKKKSTKAKKKPAKKTKPLTPAEKRTYGIIAAVIGAVCILLLTVNFFLLPRGQKKNASAPQRAEPTAQNTNQSAETKTSQKIAAQEEAESSFAPKVKPEKTPCLEKNKPPAQKTETIAHAQKQKTAQSEVKPAPHAKEKKIKNSEPAVKVIKERTAAQNEKKPVQPAQVKKQEQQKPVQEKKLEKPKPVQPAKKEPVAVAARPEKPPVPKPHKGTLIFVFDDAGHNLAQLQYFLRLPFPCTIAVLPRLAHSAEAARRIRAAGKECILHQPMQAINPNVNPGQGAIKPGMTAAQIRETLNKNIEELWPIAGMNNHEGSLITADENAMQAVLDTVAEKHIYFLDSRTNVHTVVPRIAKERNMVIWERSVFIDNDKNRKAMENEIKKGLKIAEQRGCSIMIGHVFTVELAELLTEMYPTLVEEGYSLSTIAQFAANKIDE
>NZ_CP042818.1|WP_024753388.1|1340578_1341607_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MKVLGIESSCDETAASIVEDGKTILSNKVATQIPFHEIYQGVVPEIASRKHIEWILPVVKEALKDANLTIQDVDGIAATACPGLMGSLLVGLTFAKTLAWSLQKPFIAVNHMLGHLYAAHLTEDIQYPYLGLLVSGGHSIICKVHNFDDIEVLGTTIDDAPGEAFDKVAKFYQFGYPGGVIIDKLAKNGDPHAANFPMPIIHNEGHTYDVSYSGLKTAVINQTELFWNPEYEKTPENIAAAFQDRAVKILLRPLLQAARDTGLTTIVAGGGVAANSLLRQKLAEQKDLTCIFPPLKFCTDNAAMIAGLGYQYLSRGITSPYTVGASPRVQGFSKKGRRPKKA
>NZ_CP042818.1|WP_024753387.1|1339520_1340222_-|purine-nucleoside-phosphorylase
MSIHIGAKKGEIADRILLPGDPLRAKFVAENFFENAVCYNEVRGMLGFTGTYKGVKVSVQGTGMGLPSHSIYVTELFKDYDVQKAIRIGTAGSLRKDIPLRALVLAMAASTDSGMNTHRFEGRHYAPSANWNLLKHAYEAAQKIGAETFVGGVASSDVFYDEKETWKLWAEYGVLAVEMETAELYTLAAKYNREALSILTISDSVVTGEATSAEERQLTFKQMMETALEAIIA
>NZ_CP042818.1|WP_002695817.1|1338588_1339524_+|ribokinase
MQKNILLIGSMNMDLVVQCNTVPVRGETLLGQQFHTTPGGKGANQAYALACQGSEVYFCGAIGKDEFGTRLVKNLQSVGVHCEQIKTLDGISSGIAIILLETSCGDNRIIVIAGANEKVTADDAKAALSSRKYDALVLQLETPMPTVEAAVIEAQKKNIPVFLNLAPAQAIKPELLPLIDFLIVNETELSLLAGKTVTDLQSGAESAALLRKKEAKTVILTLGAKGAAAFTADAEIFVPAFKVEPVDTTAAGDSFIGAFVTAWLETNDMKTALTRGNACGALATLTVGAQASIPQRKAVDDFIAANVSAKS
>NZ_CP042818.1|WP_024753386.1|1337954_1338287_+|hypothetical-protein
MVNYSPLRNSKRCFKASTQNCKIEALKLVGEVIVNFQNFALAPCRALFYKIFMFWVSESERARTPVVPNRNDVLKQDNLQSFKTRCLVFDTDVKNQNGHGRPWFQAETMF
>NZ_CP042818.1|WP_081718821.1|1337647_1337839_+|hypothetical-protein
MVKLRTGTDARGSKQMGQFLTMVNCPPLRNSKRCFKASTQNCKIEALKLVGEVTVTFQNFALW
>NZ_CP042818.1|WP_082048175.1|1334878_1337458_-|heavy-metal-translocating-P-type-ATPase
MMIQEKFLVGGMTCSACSAHVQKAVEEQAGVQSVSVNLLTNSMKVEFDQNAVSEKEIIAAVEQAGYSASVSHKEKNQPEKTAVDIVQKEIQEMQHRFIASLCFLLPLMYVSMGSMIGLPTPAFLKGAENALINVFTQFLFTIPIIVINRQFFVSGFKALVRKAPTMDSLIAIGSAAALVYGVFALYRIAYGLGHNDPELVHRYMMDVYFESAAMILTLITLGKMLETKAKGKTSAAITKLIQLSPKTATVIREETEHEIPVEEIVKGDIILIKPGSTIPVDGIIIEGDTSIDESAITGESIPVEKTVGDTVISASANISGTIRFRAERVGNDTALAQIIALVEEASSSKAQVSQLADKISNYFVPAVIGISVLSFIVWMAAGAGFEFALARSISVLVISCPCALGLATPTAIMAGVGRGARLGILIKSAEAFEAAQKTEVVVLDKTGTITQGNPQLTEILCMQDSYSKKDVLQLAYSLELLSEHPLATAIIKAAEAENLQAFRITNFLAEHGKGISGVIDAPSLPFHEKKVFAGNLKLLADRQIAHDSFQTEIEAIGMKGGTPLYIALDKTLIGVLAVSDPIKADSAEAIAELRQMGIRTVMLTGDNAQTAQAIKKTSGVDSYVAELLPQDKKTAIDEIKAGGKITAMVGDGINDAPAITAADIGIAIGSGTEIAIESADIVLIQESLFGAVNAIKLSKAVLRNIKENLFWALFYNTLGIPLAAGALYPIFGLTLSPMFAAAAMSFSSVSVVANAIRLNAFKPKRLSAHVNNTMFDKPADNTQKPEHKSMEEKMESTTIKIEGMSCGHCSARVEKALNALEGVTATVNLEKKEATVQYPESIGIDSLKKAITDAGYEAL
>NZ_CP042818.1|WP_002697839.1|1332879_1334751_-|hypothetical-protein
MENGSELLNLLKSFALRADSSYVSLSEFCGYLHKYSRRFLQEKPELIVYLEITEDTLLEELKALQTEGKIEITEDKAKKQVIFIPHYFINKVTRRYKEIQEKPEIPFPLTRDTPRNFSTRFLKKISLEKEFAELSENPTGSFFLYELGFSDDTPSLIFPANFTAENMLLFAVDKIRMFLHEDESHDFIQKKLLMANPGKEISVRSFLSKMRARPAAIVDTLKQSGDIYLLWSYLCSFIRQEFAKKTEKLPDEVALIQGVFITEYLNNYYRNKAQQNLQRETALKNLELNLQKQPYYFNMNMITNFKDTRGVPLLGQYSEDDLKTYMENQTTEITSGSLPHLLSFQTFDKDRYYVLLEKVIPLIISLTTENRKIIKEQCMQYWYDQMLKFIQTESMKSDEAFEIFLKEICKEQVPHLYALLNSSFIPPLVIEPKLVDTQSVELNRIFPEGKLALYQDLFALKRAKLLTDTRILLPFWYTLPFFSAIVAFFKRIRKPKKTPQTQKPEEKTTEVKATIKDIAVSLGPEFIPAGLSIDEALIKQLDLWNHNINEETRNTITQDVNAFIRDYIRGIQKTLTNSTFNAERIRNLAQTLADTPSLRSIKNKAALRNYIELYILKLVQLYL
>NZ_CP042818.1|WP_148878728.1|1346459_1347713_+|ISNCY-family-transposase
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGLAAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGICSPKKRRTRKKVHKTRNRRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTKEQVTQFGKIIKYLGIDMFPAHSSQAKGRVERLWQTLQSRLPVEFARRHITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNHLFKIEQNKFGAGTMVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042818.1|WP_081718823.1|1348168_1348489_-|hypothetical-protein
MFSLICLERLNEKIHHREKVVRIFPNVVQRFVINFPVIQIGVSTIGTADLSITMVNCPPLLNSKRCLKASTLFCKIEAFKLVGEVKVNFQNFALAPCQAPFYNRKL
>NZ_CP042818.1|WP_002699885.1|1348686_1349373_+|DNA-repair-protein-RadC
MGAKKKPDLRERLLEKGADSLSDSELLAILLRTGIKGKSVMQLAEEISMHADRHQAENIDRILYSIKGMGEGKITTILAAFELGRRYYGVGNQKIKHPSDIVLFLRHYATRKQEQFIVASLNGAHEIIAIRVVSVGILNRTIVHPREVFADPLSDRAASIIIAHNHPSGSLQPSEEDIAITERLYESGSLLGIQVLDHIILVPNGDYYSFVENKMFVAEKLLGEKKVL
>NZ_CP042818.1|WP_002699887.1|1349428_1351684_-|molybdopterin-dependent-oxidoreductase
MNNYKYVGKKFIRQDSFDRVTGVTKFTADIKRHMLLYGKLVLSEKAHADISFDFDEALLVPGIYTILTYKDIPHIPYNCMEWFTGISAYHDEYILHDRARFVGDRIALVLGENKHAVEEAIKKIIVHYKELPVITNLDDAQKDTVIIKRDSNLAYEKKIGCGDFKKALDEADYIIEDSGSTPRTHHLAIEPHAALAEFDTFGNLVIHSPGQIVFAIQMHMARILQIPYSKIRVIKTNMGGSFGGKQQPLLELIAGAVAWIIKRPVLVYMDREQSIIGTFTRNPTKVKITTAIKKDGTILGRKVETLVDGGAYDTNNTSIINAYAKKLFRLYKIYNQEFHGKAFYTNGIPGGACRAYGGPQSHAVSEINITNAAKKIGMDPCEFRLKNLVDPYDDDPVGGPNLGKAGIKDCIKAGMKVFNWKEKYEHIHKKNTDRYAYGVGVACATHGNGYLGVFPDFTNVEMILNPDGTLFVKIAVHEQGCGTIDSLCLIAAEAIDMNPANITITEADTAISPYDSAGTQASRVTFVAGGALIEAGTLLKQKIFNTLHTIEHIPLEDMYSDCGTVKIKNSDKTYTYAEIATMAEKSLSNPTSVYIHHVPKSNPAAFAACFAEVKVDKKTGLVEITDLLAVHDIGKAINPLLVEGQIHGGCQFILGMALSEEIIREPNGSIKNKTLSKYHVLNAQDMPAVKVMLIETEDETAPYGLKSVGEIAAVAPAPAVLNAINHALGTNICDYPATPERIIESIEKLPN
>NZ_CP042818.1|WP_002699889.1|1351680_1352514_-|carbon-monoxide-dehydrogenase
MFYAAKDKNTLLGLLEKSNDTTFIIAGGTDLVIQLKNSKHTVYDIIDITKINEFAHINETSEYLQIGALVTMRELCESPLVKTDYKALYQAAYELGSTLIRNRATIGGNICNASQSADCSLVLFSYDARIKILNFEGLEKTVPIHEFILGKEKTILSKKEIVTEILIPKKKRVSAFKKIGARKAVTISKISCALEYIPKNTTLTHVNVYLGAVGIKPIKAHLIESYLENKNINDIRLHDLQTIASNEIENAIPNRSSKFYKKIAVQGLIEDLLKDLQ
>NZ_CP042818.1|WP_024753392.1|1352513_1352975_-|(2Fe-2S)-binding-protein
MKINAIVNGSPVEGEVDEKLRLIDFLRENLDLTGTKEGCSEGECGACTILLNNEAVPSCTVLAGQINECEILTIEGLAQNGELDILQKKFIEYGAVQCGFCSPGFLISAKALMLHNKNPTLEDIKRAIEGNLCRCTGYIKIIEAIQAAIEERT
>NZ_CP042818.1|WP_148889399.1|1353517_1354255_-|hypothetical-protein
MRVLLACIEASAIVIDAYIQTEEKLSYLFVLCSSKLDSSNFSAIIRRYTPKALIEEMDEKTALHCLQNISVEALKNKKIPYIFPLNELHSSKECLLSLLIEYRALTAEMDEAFKHIRSQNSLRGLRRRAFDFLEKKAKDEKTLSNRRAENFLTDIVIFEERKRIASVAVFQIETINRRPHKSSLVIKKESGGGELFYDKLYCIKKIDFLSSRFTKRLARGLYQMEVPGKKTSFTVNFTVPSLFIL
>NZ_CP042818.1|WP_002699896.1|1354804_1356025_+|trypsin-like-serine-protease
MKLYSRIQVVFIVAVAAIVVGGGALFFGYHLSQKQNAHSMPAAETSDIPIIAVAPAGESLQPYPVADKTKYTVNEQENISVYEQTNEAVVNITTEIMGINWILEPVPLEGGSGSGSIIDPRGYVLTNTHVIEDASKIYISLHDGSQYKASIIGIDKENDLAVLKFTPPKNVPLTVIQFGESDGLKVGQKVLAIGNPFGLTRTLTVGIVSALGRPIQNEKNIVIKNMIQTDTAINPGNSGGPLLDTQGRMIGINTMIYSTSGSSAGVGFAVPVNTAKRVVADIIKYGKVRRGSIDAELVQLNASIANYASLPTDKGLLVSKVKSGSYADRAGLRAGTSPVRYGLGRRAAIIYLGGDIIVSIAGQPINGLSDYYSVLEDKKPHEEITVTVLRGNKKVNLTMTLSERTE
>NZ_CP042818.1|WP_024753394.1|1356718_1357891_+|N-acetylglucosamine-6-phosphate-deacetylase
MSLPICFHNGTIVSGFSKMENSCVLLQDGKIEDVFSERRFQTRHFNADVRIIDVQGAFIAPGFIDTHIHGFAGYGTEDNSTEAMLQMSIELARYGVTSFNPTLYPSERDNMLKCIRAIVKAMGKEKGAKIMGLHLEGPFISSEKLGVQRPETVSPVDMTFMEELWAASKGHIVNMTVAPELKGMRKLALYCAKKNIVLQAGHTNALYEHMIEGMQAGIFHSTHLFNAMSQMHHRNPGAVGAVLIHPEMSCEIIADGIHVHPDLIRLLVRDKPLDKIVLVTDGLKPTEQYEGQLIANGEEVVHRDGCFHRKTDDVIAGSSLSMIRGVKKLTSFGLPVETAVKFATINPAEIMRYSKLGAITPGYEADITVFDKQFNVLATVIKGSLKKNLF
>NZ_CP042818.1|WP_148889793.1|1358108_1358669_-|hypothetical-protein
MLLLNGIYLAPYMQLATLLIGKERHSGGNMFRHQIDTMGILIDYGYIDSVLLKASLVHDLIEDVPDFNVNELLNIDSEAGKVYELVLEVSRRPRQSKPDYLKNIIKKGSHNAKVLKCADRISNMISLGFVNDPEFIERYSDETEIYVFPIALEVNYRMYDELLRLVMSRRKYLLDFQFLHKNKKAT

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Crispr_ID: NZ_CP042818_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_6

1840322-1840407

Orphan

Consensus_repeat	Method
TAAGCGGCTTAACAAGTTTGAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP042818_6

>merge|NZ_CP042818|6|1840322-1840407|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAAGAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACGTAAGCGGCTTAACAAGTTTGCAA

>NZ_CP042818|6|6|1840322-1840407|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAA	GAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACG
TAAGCGGCTTAACAAGTTTGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148879529.1\|1846285_1846585_+\|DUF4406-domain-containing-protein	unknown	unknown	gnl\|CDD\|379581
NZ_CP042818.1\|WP_024751636.1\|1845501_1846281_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP042818.1\|WP_002696987.1\|1837784_1838801_+\|phage-type-endonuclease	unknown	unknown	gnl\|CDD\|227668
NZ_CP042818.1\|WP_002696692.1\|1842633_1843437_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751741.1\|1841655_1842618_+\|DNA-recombination-protein-RecT	unknown	unknown	gnl\|CDD\|236628
NZ_CP042818.1\|WP_044634970.1\|1837213_1837600_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634968.1\|1834654_1835872_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP042818.1\|WP_148883932.1\|1841034_1841607_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP042818.1\|WP_024751671.1\|1847461_1847701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002700450.1\|1828327_1829068_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|223570
NZ_CP042818.1\|WP_148879531.1\|1847700_1848660_+\|DNA-(cytosine-5-)-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP042818.1\|WP_044634971.1\|1838816_1840097_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|213207
NZ_CP042818.1\|WP_002700452.1\|1829078_1829765_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042818.1\|WP_024752415.1\|1829761_1831819_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|271320
NZ_CP042818.1\|WP_044634969.1\|1836697_1837081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889479.1\|1831950_1832988_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752413.1\|1827176_1828331_+\|galactokinase	unknown	unknown	gnl\|CDD\|223231
NZ_CP042818.1\|WP_148889481.1\|1844438_1845488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173534
NZ_CP042818.1\|WP_148879530.1\|1846588_1846915_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751669.1\|1848665_1848962_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148879529.1\|1846285_1846585_+\|DUF4406-domain-containing-protein	gnl\|CDD\|379581	pfam14359, DUF4406, Domain of unknown function (DUF4406). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 98 and 145 amino acids in length.	1.05077e-09
NZ_CP042818.1\|WP_148883932.1\|1841034_1841607_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	9.73549e-23
NZ_CP042818.1\|WP_024751741.1\|1841655_1842618_+\|DNA-recombination-protein-RecT	gnl\|CDD\|236628	PRK09846, recT, recombination protein RecT.	1.9468e-74
NZ_CP042818.1\|WP_148889481.1\|1844438_1845488_+\|hypothetical-protein	gnl\|CDD\|173534	PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional.	0.0033253
NZ_CP042818.1\|WP_044634968.1\|1834654_1835872_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	4.25017e-50
NZ_CP042818.1\|WP_024751636.1\|1845501_1846281_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	1.48504e-17
NZ_CP042818.1\|WP_002700450.1\|1828327_1829068_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	3.42835e-63
NZ_CP042818.1\|WP_148879531.1\|1847700_1848660_+\|DNA-(cytosine-5-)-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	7.50339e-68
NZ_CP042818.1\|WP_044634971.1\|1838816_1840097_+\|AAA-family-ATPase	gnl\|CDD\|213207	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.	9.92236e-06
NZ_CP042818.1\|WP_002700452.1\|1829078_1829765_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.20546e-11
NZ_CP042818.1\|WP_024752415.1\|1829761_1831819_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	4.84641e-36
NZ_CP042818.1\|WP_002696987.1\|1837784_1838801_+\|phage-type-endonuclease	gnl\|CDD\|227668	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair].	5.95391e-31
NZ_CP042818.1\|WP_024752413.1\|1827176_1828331_+\|galactokinase	gnl\|CDD\|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	2.71053e-131

>NZ_CP042818.1|WP_044634971.1|1838816_1840097_+|AAA-family-ATPase
MLLKNIEIRNVRKIKQAEIEFHGAGVQVIQGLNKSGKTTIAQSIALTLGGSKDFVPGMISVGEEQAEIIAYTDDELKIRTLIGEKVTQDVSRLDELTGRYAKVSGGVRAFLDSIRSGLEMPFAIKDWTDESIIELLKERTGTSEKIALIDEELKRLEEARTQTGRDKKRLGTPTPVPKVEHAKPIDELQAEKEKAQNFLSTLKNAFSNINQEMHTLNIESESDIDAAIQRLELAKENLHKWLSKNHKQYSKEDIAEIDAAILEWNKNETAANAYDAYIAACDEIKKLEDEYNGLTKKIEAKRQERKDTLASMDLGVSGLEINEDNQLVHNGAIRGITKTNTIGNWSTAQSIQVFFSLGVRFSGEMKVMVVDNAESLDEAHTAIISEWAEKSGFLVIMLKVGDVPEELEEGIIYLKNGEVVANEYRI
>NZ_CP042818.1|WP_002696987.1|1837784_1838801_+|phage-type-endonuclease
MENLVKQLLGKDTNYVFTKSMAKDEWRNARRSSIGGSDAGAIMGLNKWASPLTVYLDKKGLHSFEGNMFTERGSWLEDPIRQRCREEFGVLIEEVPYMFYSGEQKFMSANIDGLIYVQEPKTISGIEVSGLGGHEIKTSQRGDGFGENEIPDSYFAQVQHYMSVLNLDWFVLSAYIIDKNELRHYAINRDEAFITRLVKAEKTFWEDFIEENIMPAPSGVDAEDEAIAKMFEGAENTIILDGEAESMSAEYLLINAQIKELEEKKSKLSSSLKLKIIEQQTNSEEKKAKAVAGKYNLSFSKSIRRTVDSEKLKKDGLYEQYLKESEVAMLRITEPKAK
>NZ_CP042818.1|WP_044634970.1|1837213_1837600_+|hypothetical-protein
MSEPITKVSETISFEDDCTFGNVETKLSNGWTVTQKFSWSFDSYYEPEIDYQCEDVGDLSIFDKNMEPYSNELTSEEEKALARLCIKDADELTDAVYQQTDWKSLAEEVREYNKNPYSYYGVTPLDFI
>NZ_CP042818.1|WP_044634969.1|1836697_1837081_+|hypothetical-protein
MNIEEIKKLSLNRRKTIAKSEKTPQNILLSLAASDPHRYVRGAVAENINVTADILEILLEDDDLYVRNKARERLGLFKLRLSEEREKTIEEKAEDIEDECDCLADFEARKKEQERWAKGAEICIPFK
>NZ_CP042818.1|WP_044634968.1|1834654_1835872_-|M23-family-metallopeptidase
MDIITYPQTDIDLEPYVDTSTDYFFSDKTEEHTRKKTKTFDFDSLNYDSNSDFFSFNPDLEQKKHSFHLHTKRRETRAAILATQEPIFFSPKIRSQYLMVSFILALVCTIIIFSLPTFDFLLGMYRLANIRFADDPAISKILHTNAFPEEEAKNTSQALADALPIVSYNTYTVKRGDTISGITVRYGLKNMSSILSVNNISNARRLLVGETIKVPSMDGIMHTVKTGESLQSIAGNFNIPVTALLDANDLSSQILNIGQQLFIPGAALSMFDLRKALGELFVYPIFGRFTSGFGYRTDPFTGAKSFHNGIDLAAPQGSAVKSSLDGRVAEIGFSRVYGNYIILTHSGGYQTMYGHLSAVLVRRGTYVTQGTKIGQVGNTGRSTGPHLHFSVFKNGRVLNPFTVLK
>NZ_CP042818.1|WP_148889479.1|1831950_1832988_+|hypothetical-protein
MKKRFCVLLFLFIPLFFYSENLSGIWENGSKIIEFAAQENADSAQPLNDENRSFNMRMVLKPYYAFVFEPLKTVSATVKNRFDISELYYLGIEYPRERHRVQIPVCIFQDALFTSFFQRMPYYTHREEIPEEAIPVGITAEQEAEIRGEHKSLLFGFWVEEGTPDGILLYPNEIPQHITAYFFTEKGYIAFRYWKDDLEYRQSSSSFTADDEQVYEIPQYLQRGEAVYTCTTGRGRQLRNYQQGTYTITGDKTQGLTLSLKPEKAGPGTHAVWNLYPNSKYPEITDLPLYITETGQIFSYGAPFLMRSKITDLDSEVTKHNALRRPSREPLLLPDKVDFFDSEHN
>NZ_CP042818.1|WP_024752415.1|1829761_1831819_+|tetratricopeptide-repeat-protein
MKHGILKNIFLFFLFFCFTGVNLRAQTNSLQPKITTADTALGSEEFRRGVQAYYRGAFNDAIRLLEKALSYIPENPLILEWLGNAYYRSGVEGSALQHWEHAEETEFGSILLKNKIEIVKERRNMLPDFPDMLTFSESISFSALNDGNYLFRRPASIVSMPDGSFWLTAYGSNELIRFDVNGVILTRTKGPIQGFDRPFDVIRMHNGDLLVSEFAADRISRLTKDGKFISSFGTKGRGNGEFIGPQFLAVDNYDNIYVTDFGNARIVVFSPDGKALFTFGNKDGIFPGFIAPAGIAIINGLLYAADAVKGCIYTFDTAGNYIGTLLPDDSLKYIESMRVWKNNLLVSSLSTVSLIDISLASIYRIASLGAAPSRIIGVAPDANGNIVLADYKNEKIEIVSHITELAGGLFVTIERVYSDRFPKVTVNLRVQNRNGTPVVGLNDSNFLITEENHPVNDLKLEGSAYLNDNCDICILVDQAPSSDEEKKLIQSAIKEIAKAMGEKGQIHIVSASNIPVLEGKFSPSQLVSEDFHFKAGQSAHRKFDLGLRLAATELINAEQKRAVIFLSSDNTFAHSFDRYGINDLTAYLNNNMIKFYAVSLKKQASSTELNYLAAKTGGKTAYIYAERGIAPLIQDLLEAPIGTYMLSYTSILPTDFGRAYLPIEAEVHILSRSGKDKTGYFAPLE
>NZ_CP042818.1|WP_002700452.1|1829078_1829765_+|tetratricopeptide-repeat-protein
MNALAEGIALYKKGRYTDALTELLQITSTSSETNIDLAYYIGLCYARLDRFDDALIYLEQIVTGNADIARVYQCRLILSYIYTKTDRTRLAEFELSKLIQAGYESVQVYASLGFLAYEHGETDKAVQYYQKALDMQEENATALNGLGYILADSGRELTRSLSLCKEAVEQKPDNGAYLDSLAWVYHKLGFSLEARTYIKRAAEKLPNNKLVQKHKTIIMTEHKEDWQK
>NZ_CP042818.1|WP_002700450.1|1828327_1829068_+|5'/3'-nucleotidase-SurE
MKILLTNDDGYGSAGIQTLFELLEGKHEVVMIAPHIDRSAISHAITMNDPIEFIKKEKNMYTCSGTPVDCVAAGIMSIFNGEKPDLVLSGINCGGNLGTDIVFSGTVAAARQAVMHAIPGIAVSLMQSDNGDYNFDALANFVLQNLDTLAKMSYFDVLVNINAKSAPSYSHASFASISRRIFKSKGEIITHAEGKKQFLYGGGTIETENDGTSDWDIVMNGGISVSQVYAQPVLDKKTSESPIFKF
>NZ_CP042818.1|WP_024752413.1|1827176_1828331_+|galactokinase
MQKIVPFHIDEYGDEPEAVAIVPGRFHLLGEHTWFAQGNTLSMAINHYLYLCVSKRTDSNFRLFSLSLKERKKISASNLRYRKEDRWANSVKAVILSFIDSGYPVTGLNFTILSEIPADAGLGTPNALKVATALALRKLFASKLSKEALLDILEHANVQHLKTYPHRADILCALFAKRGHCVRTDHRKKTADLYPFPLEGKTIILTDSRIPRLLAREELGNRLQQCIEAYELVKKNPDIPKNMTKLTETMLDEVEIPESVRRRVIYIIRESLSVDDAVDALQKGDDLVFSRIVNRSHEGLRDRFEISCPELDWLVKRALEFVEQESSDMICSRLTGRGFGGCTYSILKTEDVETYIEKLNDYERIFGFKPLYYRVKPSGGARII
>NZ_CP042818.1|WP_148883932.1|1841034_1841607_+|3'-5'-exonuclease
MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVPCERLFKLNPLNETILYHEEAAKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRCGLTLADYFSKQFDALKFVKKATRQKAIPRLENLKLGTVCKSLGVNLENAHTALADIQATQALCIELFKRGVKVE
>NZ_CP042818.1|WP_024751741.1|1841655_1842618_+|DNA-recombination-protein-RecT
MNVNNTNKNQVTAKTKGGDLRSMIMANMDMFKMALPKAITPERMTRIAMTAVTRNPKLALCNQNSFFGALLTAAQLGLEVNTPLGQAYLLPYDSKNGLQCQFQLGYQGMLELAYRSGQFKRIKAVVVHEGDEFTYSYGLNAILEHTPSGNGNPTHVYALYELTNGGVDFEVWTWEKVMQHGMTFSKSFGNGPWQTAPEEMAKKTVLKALLKYAPKAVELAEAANLDEGIIDKKLVRNDGIAEIVTNIEYTEPVQQQTAVQYAEQDPVNANGKTRSSERQKSGAAAQMSKEQQMANEDEQAIEKFELQQNAMFDIAPEFPM
>NZ_CP042818.1|WP_002696692.1|1842633_1843437_+|hypothetical-protein
MKVTGQYLARKVYSNNVHFVMLKIDDKKQADLLDTLFKRKAERDARAGHESLLNVSFNLQYREKSYKQLRTVFALVTAIFISMDGRLPTEEEKYALYLDLLDVYALKTPSKIKPDTLRTIHLSESNTFEAAHFINGLMLHLATECDLDLDLQSDVKNLLWEWELHRGGEEKDPLDYYDTECTQLISEADWRELHQYSEASGLHEAIHLHHIVTRGANAAAIDKAWNWCALTSDEHEQLHHYGEKAFLKKYPHLEGKFKRAHRMAGKL
>NZ_CP042818.1|WP_148889481.1|1844438_1845488_+|hypothetical-protein
MKSNFKSCIFSETTKKQIDAMTDINMKLRFYEAVTNYGIYGIDPDFEGIDLLIWIPMKDIIDNATNKRGAPVGNANAKKANNKTSDSDTEQEKQIKYNETKKLPENIESNSEQKKQMDLIENKENNSKQEKQIKQLNSIKTNKTIRPNDNDNDNVNDNVNDNVNDNVNHPPPEDTAGQDIYTCSDKQEDEEVFSDFSENENLTQLAKDIYGVFVEAGINKPNTFLLFLQRDFQLGLDKLREQAIPVTPDILAACKNYAKVLALKKQQATWWNFTGGFDGFCGKNIILKFLPERFTLTQFEKNNRSPQAEKDYSKQDFSQSSIDEFFGKPQPPPQVVSADVGDELEGVMF
>NZ_CP042818.1|WP_024751636.1|1845501_1846281_+|ATP-binding-protein
MRVLKQGKWQQVNITQSFLPDYLRQSKALCKTHGEYKCLIDTRTNEASPCPLCEQDRERAELETQKELEQFEARLKKIDGLPKRYRNAGFKNFVVDEKNKTARDSVLSFAKNPNNKWLLLLGKNGTGKTHLAHAVLKLTGGIFRDFDDVSTDLLDAQAGYGAGLNKTLDKYANAPMLVIDEIDKVKNTEGRITWLNTILRRRYNEMLPVVLVGNIDLERLCQIIDLHGGEAMRDRIKELGIVVNFNFESYRPVLRNEKE
>NZ_CP042818.1|WP_148879529.1|1846285_1846585_+|DUF4406-domain-containing-protein
MKQIYLSGAISNNPNYKQDFETAYNKLHKAGYSAILNPVKFCEGLKTWDDCMRKCLFILSRHKNLGIAKIETPYASNGAELELQIAEALGYEIYERKEN
>NZ_CP042818.1|WP_148879530.1|1846588_1846915_+|hypothetical-protein
MIFGESYNLIQQAIASHSENKLNKCVLCDCYQAYALMKTHIDEANKHVNRANMEFDYYWEKVKEMKTNEQKRFLKDVKDNAEIIINELVCVIALIEKSEKQIYGGENE
>NZ_CP042818.1|WP_024751671.1|1847461_1847701_+|hypothetical-protein
MKQLIAATKKHGETVKSIAGQKESTIVGMTLNNRVIIDKSFSQSFGQPYGDKVSCTTEELLDNFVFLSDNSPCGELVES
>NZ_CP042818.1|WP_148879531.1|1847700_1848660_+|DNA-(cytosine-5-)-methyltransferase
MTYLSVCSGIEAATVAWEPLGFKPVAFAEVEEFPCEVLKQRFPQVPNWGDITKYEEWENEAVDIVVGGTPCQSFSIAGKRGGTNDLRGQLMYCYLEIVGKYKPKWVVWENVPGVLSSGNGLDFASFLAGLEKLGYGWAYRVLDAQYFGAPQRRRRVFVIGHSDNRTDLAAKVLFEPEKPRTSFEASEDKKKEITGTLTTGFGARVFDCDTILNNQFAVESYTLSSFAQYKEGVGTLKASGGDFGGGSETIIKEGNSIRRLTPLECERLQGFPDNYTQIEWNGKPKDQCPDSHRYKAIGNSMAVPVMRWIGERIKRIEGA
>NZ_CP042818.1|WP_024751669.1|1848665_1848962_+|hypothetical-protein
MSNPKDQRRCALATSGGVCEVCGRPLNEGQPQGAHRIGNTKANRAKYGDFVIDHRLNMGMTCSLKCNGLLDISKDTGEVVKLCKKIYEIELQKYEGQK

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Crispr_ID: NZ_CP042818_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_7

1896864-1897015

Orphan

Consensus_repeat	Method
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_7

>merge|NZ_CP042818|7|1896864-1897015|CRISPRCasFinder
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTTAAAAGCTTCAATTTTATAAAACAGTGTTGATGCTTTTAAACATCGTTTAGAATTGAGCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT

>NZ_CP042818|7|7|1896864-1897015|CRISPRCasFinder
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	AAAAGCTTCAATTTTATAAAACAGTGTTGATGCTTTTAAACATCGTTTAGAATTGA
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148889511.1\|1904127_1905198_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|366631
NZ_CP042818.1\|WP_024751705.1\|1902234_1902744_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238651
NZ_CP042818.1\|WP_024751703.1\|1901121_1901499_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889505.1\|1894044_1895613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376217
NZ_CP042818.1\|WP_148889499.1\|1887627_1888449_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751704.1\|1901515_1901905_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634573.1\|1895614_1896811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634567.1\|1902746_1903184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751702.1\|1900666_1901143_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224863
NZ_CP042818.1\|WP_148883985.1\|1890156_1891332_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP042818.1\|WP_024751723.1\|1883501_1884308_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634575.1\|1888452_1890129_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889507.1\|1897102_1899676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP042818.1\|WP_148889501.1\|1891335_1893249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274303
NZ_CP042818.1\|WP_148889509.1\|1899747_1900632_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889497.1\|1884328_1886155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889503.1\|1893273_1894035_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275378
NZ_CP042818.1\|WP_148879052.1\|1903583_1904120_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366631
NZ_CP042818.1\|WP_024751707.1\|1903143_1903509_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002695630.1\|1886151_1887621_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148883985.1\|1890156_1891332_+\|hypothetical-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	3.68811e-16
NZ_CP042818.1\|WP_148879052.1\|1903583_1904120_-\|hypothetical-protein	gnl\|CDD\|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	4.51956e-07
NZ_CP042818.1\|WP_024751705.1\|1902234_1902744_+\|hypothetical-protein	gnl\|CDD\|238651	cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active.	0.00133365
NZ_CP042818.1\|WP_148889507.1\|1897102_1899676_+\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	0.000293087
NZ_CP042818.1\|WP_148889505.1\|1894044_1895613_+\|hypothetical-protein	gnl\|CDD\|376217	pfam18798, LPD3, Large polyvalent protein-associated domain 3. This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.	2.21716e-11
NZ_CP042818.1\|WP_148889511.1\|1904127_1905198_-\|restriction-endonuclease	gnl\|CDD\|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	6.22069e-17
NZ_CP042818.1\|WP_148889503.1\|1893273_1894035_+\|hypothetical-protein	gnl\|CDD\|275378	sd00031, LRR_1, leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	1.83722e-21
NZ_CP042818.1\|WP_148889501.1\|1891335_1893249_+\|hypothetical-protein	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.13934e-08
NZ_CP042818.1\|WP_024751702.1\|1900666_1901143_-\|hypothetical-protein	gnl\|CDD\|224863	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion].	1.93422e-05

>NZ_CP042818.1|WP_044634573.1|1895614_1896811_+|hypothetical-protein
MKKNPIGKRLKEYTASAINTGGEVYEKIMASGKEHAEEQGAIENALCQLFDFIDYYRQPEIFNHQGTHLLKGLNFFSGLKKSRQEPYSSTKHKYKAMMIRVDDDAPLDTVWGTKWNAEHALRYYFNNDDCFVMEFTNEQEKNLLKNQFISDGWQVDGLPVEKSPHLNDQASLVNVNGIRMINNTVLQTAQAVRIAKGIYSLHFFIRGAMRNSKGVWQGKLNLKIVRKDGAAIFTKTYRCGMHWENIQEHLYFEQDGEYDCIFTCEKNVDIDFINLFPEVPYPSLSILIGHGGMRDLFSIFFAPHVADPKDKDDEKNFKDNEFIVFDLLDKYKFWFPFADDSESKRERLRLKIDFNDKHWGYWTEDIRWLDLLYVSALLDSLLPVGVKVFTIISSRRGS
>NZ_CP042818.1|WP_148889505.1|1894044_1895613_+|hypothetical-protein
MRIVIDADASKQIIHTLKRLSEQQQFHEVLKLMQKTFVEGKHPRDEEGRFASKGGYVRAKRLKLKEKLKDYVGKDIKNEKTGIPAYISNESINKISSEKAIEKTKANGFTVDDHFYAASNIVPLFKKADLRGVYKDKNNSKDIVSIKRFNCRFRLPSGVAANAYITVKEARISGHKIYSLEVMELEKALKNEGLGMAVRKSNATCIPENTPPRTFSIPDSQKKARERETHQTDEQQQFHEILERMQKTFNEAEHPRDEAGRFTDKGPVSKEVHKTRQRLRAVFTDKAVPMPDIPFTRENYNKLFPRNRIDTPLGSVKLGEHQFEKLQALGRNYLLGAVATTLKNPVAIIREERDGRKSNLYVKSFIKDKKNKIVQSVVIDIDGQHISISTHEKDVSNVLNKIETVGQLIYIDSQPDRMAEQHHLSDESVVNPTRKQEKALKSCTTSIPHSQKKARAQNAALPKDFVSRCNMVSIQLMLLKWDIAAIQEETDRRNNMYDLLLKSFNKIVQELKKTQGSKQRRL
>NZ_CP042818.1|WP_148889503.1|1893273_1894035_+|hypothetical-protein
MITINGTEITELTYNGVEIEKALCNGVVVFEKKRENIIRMKTSADSINLRVTTKDGSPRELWNDGKKIAEMQSDTYQTVSIQNNAEEITIKGYDIQELDCDNNRLTTLNISGCTSLRQLVCFNNKLTTLNASGCTSLQWLDCSNNQLTTLNASGCTSLQWLYCDNNKLISLDVSGCTSLQRLDCNNNKLSAEVFKKLFEDLPERKEKDGRVLLYKDGDSNYKDFTQPPELAAAFKAAKEKGWKFYKNNWSTEI
>NZ_CP042818.1|WP_148889501.1|1891335_1893249_+|hypothetical-protein
MTIQDFFSTVKTNPFEIVKASDMDVGFQSIVDNASFLVRLAVQAEHDFIIGGQVTPIKDSLSVRVSPFIAFNKKTQRLLCKGTETIVELKAAHATKNRRDVLFITEKGWVDFKKENRARWFVARGNAGQTGQENSGFAKVEPLNKRQAFKVALAVISGENNSGTAKYCDEECVKLGEISVKASQTKFGKEDIFAVSALAENEENAGWTNETMRTFSLAPMSKAAMRFFKIHKPDGTLKDGVVGKSNLALSGGDMLTGDDIVIGKKIAVKAGSINPATGAFEYTIPFVGTERLEFTIFESAKIKEVFDVVFNAFAYVWKTFIANDAAVYRYAQGYTDLGIADLNKVFFEALQKEIQERIAAIDKEAKERKEADAAIKTFAEEAIAQEAQERKEADEKETKERKEADAEIKTFTEEAIAQEAQERKEADEKEAKERKEADAEIKTFAEEAITQEAQERKEADEIEATARIAGDKQIKELAEEAISLSVPEGSTLGIYDDEEHKTFLKLDGKSFEPAEYPRFYEYWKEHLAFLGEDNEKKPFLPYVETADYSRLGEVVSFIGTDYHHEFLLCDGGPFSPDVYAEFYEQYWKKHLSHLGKDSIGWPLRPKLKGSIAGSNVYIKALPHVEHEFITPVIKTGK
>NZ_CP042818.1|WP_148883985.1|1890156_1891332_+|hypothetical-protein
MDFDYKIKTFDEIYTEMQLKVFGKILTATDANSGSVLCSLLEATARLIAEAYLHCQIGYAKYLQDLVEGAFGVKRLLGTKAKGKVVFFTEKGKPAASHLYIAVGTEIACGDTVFVTTESGMIDKGTEQSKPIFAEAKEIGEKGNVPSESVDTILSGLHSSIAGVKNIRPFENGTSAETDPELRKRFVNYLRGLQRTNFYGVKEAALSTKAYHVNVVLCAPPKDIPTRDFDGNPITEHNVNCAVYVCDKEGECSGALLDEVRKTLRGDGTYNNPGYTPAGVHLAVAPIVADRRFQGEGNKLNLEIFSVLPDKEEAKERVRKKVIEFFQGFEVGQSLIITDLILAVRQFDWVTDVIIKDMNLPQGSANPSATESHKLLVVKEEDVLITIKQQG
>NZ_CP042818.1|WP_044634575.1|1888452_1890129_+|hypothetical-protein
MRQGYLREGLWQNVYLIEFYVDNNTSPSESFAFGVPPESEEFVLTQRKTETKTFGGLVIDDYGHDALKITLSGSTVNNELRRMYHTTGASEYVTGEEEIFRLKTLLEKYKGNINTLGKKILLYDLSKHTNRSRRKKTIDSFCWQVYPGEFKIKRTKEKPNVYTYSIEFTAIPAKDTFVFYNTIFGVDFNKAFDAIEQYLQKLEKSLSFFKSVLEKINEARRFAAACKEVALYAISGTINAFRILLDDTFQLGHSAIALYRETVGAEGIPALIFETGDFVAAMLIDFMTNINVLANNIHAMSKKEFYIPAGVFEDWEVTIEELDALSQLQCSGIYNELCALSVSAQMERPKEYTLPVARGAAITTYGMQIGLITDGMSFESIAQNHYGDSSKAYIIASANSAGSIDDLSARGQKNVLIPVLERSASNYQNRIIGLSGQRDNYGVDIALDENGNILLNDLQTDFKFVTGRRNISQAVLMRLRENINKRVMLQLYGIKTTIPDSESAGSAYILSSIIQTLKQESRIKELLSVSFKGDGDALRIDIEYTDIGGQRRSLSELI
>NZ_CP042818.1|WP_148889499.1|1887627_1888449_+|hypothetical-protein
MRIVIRERSGQVTGQVPLQNTVPRIGMWGTVTDVDSTRNAVNVRLTGGVLLEDVPVASLDEWICEFKDGDYMSGSRNLPPENARVFVLMPTGTFEGAFVLCSSLSMFEKEHQKKFMSTKEQRAEKNVERLRVRPGKWIEKYNYKTGQLELTSSNEKVKIAIADDNNKKEVSVNAFGANITIDKDGNIAVKAATDKKISLNGENLSGIVKADELKTQLGKMTARIDKMVNTFNGWVAVPNDGGAALATAMKTVIGTMVKEDFSNIKNDKVVHGG
>NZ_CP042818.1|WP_002695630.1|1886151_1887621_+|hypothetical-protein
MMITIHKSPQPKIEIFDYNAPTVPAFTLSAQTHEYTQLLSYSFTESTMDLKGRFQFSIAGGDNNLFNEIQPLQIVKIYEGANTPVFIGVIANKDLSCTMSQGGVQRQINFSGMSITGLIANFQLILDIKFLSLTQIMSAETINKDMVLRINELQTKEPLKIKKFLELTWDTYLGYVGVRYLKPTADKAPVKGKAGESNKIVYDIIKNFMGNDFFEVGEAESIPVPIANTFFNQGINTVQQIWQTILAPPVYEMFSRVNEKGKTKIVVRELPFSFRENGIVHNRWGKLPIRKIKSPHLVDYSLRLSIDEVYTTFFAYIEGSSLSADQYIVIEQTDGDKIEKKILQVDEKKLKTYGMKMLQVAFRGYKKQTEKTETITNAMHKLSLRLRSWFGRLDEMYTGSIRIINDFSEKQIRCGERVSFLGGEFYVRSCDHSWSYGGTPTISLQVIRGGKYNKGGEFVKVMPEMGTSNIELKFDGEETNSLVDISWAR
>NZ_CP042818.1|WP_148889497.1|1884328_1886155_+|hypothetical-protein
MGMKEVAIKLNLETGSFSSSAQTISDAFDKMLGKMKEAQEVGDFDLAAKYSQAAQQMQQVYNGMANGNQAGGGGIAGFNNTVGGISNTAQSVIGQIGAGDAAGGGLTLLGKGAGLLGKLGTGGAIAGAGLLAAVGAGWGVKKLSDLYTSHDDAAEALNASLNNTMRTRFDLSTKEGRGEWRQFAKDYPERKNDFEISKDGKTMIETLESRYKVNTKNIEDAFTKASAAANSFSYSMEDGLSMVKHLTQYGLSSGSYDVARNVFGWSRMMGIQKEEAADFKGTFSRYGNKDADSLAQAYRASSFMGMKEGQYSETLGLLQNIFTDGISKGFTKSIAEIGSTMTFLKNASGNNPLWMGEQGASRYQQLNESGRSATSLSSVSDILTYRAIASLSDAEKARILKEHGLESQGGYLDNMQIAELGFLPEIYKKKMGLFEQMSGKGNKAGMIEMIRKDTGFDYIQAAQFYELMNNGEINKDAYESITNASIRPEYTSRVGASTGSAELWRTWTAELGKGPAELTKFLSVFLSGTRQEEFNTGKLPGMGEGSVNNVTLIKELQQRKQDLAFELQTLYNTFFPDQEKIKENTEELKKINAQLELLLNGEIKVESR
>NZ_CP042818.1|WP_024751723.1|1883501_1884308_+|hypothetical-protein
MVKIKITADNPALQELAAAVKKIGRSDILPATDATFQGCAKMVADSWRAYGQGQKDIPGVPPMKKPSSNYSGGVKVKKSAPLEYTISNESKAAPLLEYGTDGYDMKTTHPYGKKSRVSKQKNPKTKMIELIPYLIVPFSWGTPGTVTFQNTMTEDIYAIAERMKKSVVMEETHFEENWAGEAIERHEYTWADRLNENDLGNADGMVRMSDTPTGKSTYWTFRIISAKSPKNSWINKGIPARNVTEGLKALHEKEIADAIQNALATDLG
>NZ_CP042818.1|WP_148889507.1|1897102_1899676_+|hypothetical-protein
MAFKDRKVLTTVKVNPYEIAKASDMEFGFRSILDNFSMLLNAIGATHTPLVDEAGFNNSNELKYVGKKEKDFIIGGGLVDAGNKQLRLLPILAFNNKIGLLISDGLDKDNKPIEIEIGSGSGSFILTHKEDYLYRIESVYIGNANTGEETSGTTANIKKSDPIWDEFQTEWRGSYRVGENDTMQVSTFNKRQSQAVRLFVDFGALVPRAADASANIPDERSIWSERVKIAEVLVCFKRNETNWIYEMQPITKDDVRFVTARCYFDWRVQEEVIEKAKAADSVWVQHAKVAKPNQNAQNQKAEEKRIAGINLDNKAWRAEHYNYRWTAEHTRTYRLGSIAEINEQLYKMHKSDGDIKERVIRLDHINLRPEDPNALRAEKIPIDLVGNADIPLPYNKEIKSYDDVKKGLRAIAETLRGDLIPVGPDDGSGNSDISLPHNKKIESKENIKKGLLVIAETLIAADEKTNTVNTTLNKKIDTVNTTLNSKINRVGEVLTNHINATNVHSATSDPTAHRIAMRDGNGRMQVASTDKNSGESIVNVNFLTREWSPDFVMRVLMSKLITNQEEFNTWLSQTNNKAYTYVYLKGTFNRSGTINLALIGTQEVIGLGATIKVGIVSFSDSSYFGVGIDGDDTGRIVRNIYLEVTGTINNGTVLGFEQCTCINCTAYVTGRNGIDGGDGERGGNGSPGTAGTSAMGYYECIVDRCSAIVYGGNGGRGYGGGHHTFFKGIIPSRLSGDNGGAGYDGGAVYSCYNCTMKSPLVHEYAQAGNGGDGGKGGEGYYDNAGCLGKSGDGGNGGRGGNAHVFNSANGKGGSGGSGGPRGDVFPPKHTAKSYAATKKRKATVEGSAGINGRVVVM
>NZ_CP042818.1|WP_148889509.1|1899747_1900632_+|hypothetical-protein
MKRKIIFLIGLLAFGALIISCDPNGTKKTEKERVEKEKEQQQQQKKEQQEKQDLLDMLIVTGGSKNAMLDGEYFTPEGERIRFSSPDSTNIACFSNEIAEYTVDGNTITFDFSRQIKAYENINVENYLKALQLLAQNTIEFCEKELNKEGLTDKRKKEMQKALNDAKQKKEYFSSLDGAVKHERAQEKESLDYFKKRLEKETNETEKQALQKQIDEITAKLAQTDEQLKADISKRMEEVFQWKNRLAAALKTVNPVTGTLSADKQTITIKKMVTDVKEDGTPVYAEDAVFTKKQ
>NZ_CP042818.1|WP_024751702.1|1900666_1901143_-|hypothetical-protein
MDQSSSIKSSFQLIDYKIDQINFSLTPETQFLAEDHGNKLFDIEFMFRDPQKFIDNEETYYVNGIQMLLKVLVNEEVMANGTFSISGLFKTTGEFSQDIEQRLVKEQIPAILFPYLRAAVTNILASAGFGSAILPLVNIQKMAGSLNLEIIEKKHDNK
>NZ_CP042818.1|WP_024751703.1|1901121_1901499_-|hypothetical-protein
MSNNKKIIYDIREQLAKEFNIMVELRRLNKYNEYEITIFDKNRYHSKEFASFVFELKKKLWDNNIYGVYFTLSIPQKSIPQKLIVQENLDTCIQHKYKTHEYKTNIPIKQDTYKKGENEWISLAA
>NZ_CP042818.1|WP_024751704.1|1901515_1901905_-|hypothetical-protein
MSFQQKINENERIAQECKKLKAFNVGASRAYYCAFLKAKDYLIANGISKQKYKQMVKNKKERAYSHGSIQKVLYTVKSTKNNKIDWSTLFLCWDNLYKQRIVADYDEQLITEDNFDKILSDLQFVLAIF
>NZ_CP042818.1|WP_024751705.1|1902234_1902744_+|hypothetical-protein
MKITGYHGTSTKNATSILKNGFNASTGIKQWLGDGVYFFGTLKGYSDGIEEARHWALYVKKEKEISVLSAEIESNDFLDLCNCVEHRKLYDKVLKIARALHSASKYKDEDFNDWHVFIRIKENNSIDFIRAFVNAAKDTGHIVRRPQIQICVINKSCIKNMQLVCEERS
>NZ_CP042818.1|WP_044634567.1|1902746_1903184_+|hypothetical-protein
MDAGTKYLKQLIQTFSDMTVEEYEKLYKETMVQTDSFPKILTEGVPLIDEYLKEKEHKALGIVYMYMYQDIKKERINMSEPTLKINEILSSIKENTGRKKTKPSIFQKPVALVKKSMTSLPNDFYKTMKDVYNENTEYLFNTSRI
>NZ_CP042818.1|WP_024751707.1|1903143_1903509_+|hypothetical-protein
MKILNIFLIQAGFSSYGLPKKDLSITKEVATEMKDKEHDKALAVQSIVFTITEDEETLAEMALKYMVIFCDFENESNKELEDSIFKEMQQVYIDKANEFLVPAHLPALYRPHLQDMINSED
>NZ_CP042818.1|WP_148879052.1|1903583_1904120_-|hypothetical-protein
MQYKEKMIPLEQKTWSEFSISQLFNVYTGRDIIISKLEKGIYPVVSHTIENNGINFFTKNLENRRLFKHDNTISLADRGNFHSFVQPHNFYIGTRVKALEYTADNLNKDVLMFISQMINKQKVRFSYGFNATDKVENLKIMLPVTIEGKPDYDYMKKYIPIQEIKEIYKALQYLHTSY
>NZ_CP042818.1|WP_148889511.1|1904127_1905198_-|restriction-endonuclease
MSKRLSLNDVEWGEFRIKELFDVKGTVTTHPSVLIAGGKTPRITCAGTNNALDNFYKNNPTEKGEVLTVDSATDGYVFYQKNDFLATDHVEVISRKDDKPISKELGLFLKSVIDKSKGEKFGYGYKFSQTRIRQQIIKIPVDQNGEPNWQFMEDYIKQEQKIIAQKVIDYYEQKMLETAFDLVGLEDVKWKNFKLGSLFTFERKPSKGLNHLDTDKNRGISYLGATNKNNGVLEFVDPISNLVYRGNCIAFIRNGEGSMGYSVYKKENFMATQDISVGYNENLNQYNGMFITTVADRVRGKYNFGYKRNQSRLENEILTLPADKNGNPHWEYMSKFMQKLEVEKISNFLPYIYIYI

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP042818_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_8

2243461-2243595

Orphan

Consensus_repeat	Method
AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_8

>merge|NZ_CP042818|8|2243461-2243595|CRISPRCasFinder
AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCCCTGCTCAATTCCAAACGATGTTTTGCCTGTACTCCAGCGTAAACAGGCAAAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC

>NZ_CP042818|8|8|2243461-2243595|CRISPRCasFinder
AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC	CTGCTCAATTCCAAACGATGTTTTGCCTGTACTCCAGCGTAAACAGGCA
AAACTCGTTGGCGAAGTTGCTGTAAATTTTCAAAACTTCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148889621.1\|2250140_2251349_+\|ZinT/AdcA-family-metal-binding-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889619.1\|2249713_2249905_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002698949.1\|2244188_2244419_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP042818.1\|WP_024752452.1\|2233648_2234452_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP042818.1\|WP_024752447.1\|2239605_2243160_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP042818.1\|WP_148889615.1\|2244415_2247241_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP042818.1\|WP_002698961.1\|2234946_2235474_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372644
NZ_CP042818.1\|WP_024752444.1\|2247293_2247830_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889617.1\|2247826_2248855_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP042818.1\|WP_039915057.1\|2243791_2244031_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP042818.1\|WP_002698960.1\|2235470_2236064_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP042818.1\|WP_148878827.1\|2238304_2239273_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|223301
NZ_CP042818.1\|WP_050778902.1\|2248886_2249705_+\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227591
NZ_CP042818.1\|WP_148889623.1\|2251466_2252666_+\|ZinT/AdcA-family-metal-binding-protein	unknown	unknown	gnl\|CDD\|370371
NZ_CP042818.1\|WP_024752449.1\|2237801_2238305_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP042818.1\|WP_002698959.1\|2236066_2236483_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752439.1\|2253101_2253413_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002698955.1\|2237494_2237704_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP042818.1\|WP_024752454.1\|2230293_2232699_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP042818.1\|WP_148878828.1\|2232695_2233667_-\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234631

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148889623.1\|2251466_2252666_+\|ZinT/AdcA-family-metal-binding-protein	gnl\|CDD\|370371	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment. ZinT plays a critical role in recruiting periplasmic zinc to the bacterial zinc-uptake complex ZnuABC, consisting of families pfam01297,pfam00950, pfam00005, regulated by the transcription-regulator FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), pfam01297. Members of this family of prokaryotic domains were first identified as part of the response of bacteria to a challenge with the toxic heavy metal cadmium. They are able to bind to cadmium, and ensure its subsequent elimination.	1.48709e-08
NZ_CP042818.1\|WP_002698949.1\|2244188_2244419_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	6.54277e-19
NZ_CP042818.1\|WP_024752452.1\|2233648_2234452_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	3.69613e-72
NZ_CP042818.1\|WP_024752447.1\|2239605_2243160_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP042818.1\|WP_148889615.1\|2244415_2247241_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	8.61558e-141
NZ_CP042818.1\|WP_002698961.1\|2234946_2235474_+\|hypothetical-protein	gnl\|CDD\|372644	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies).	3.41865e-08
NZ_CP042818.1\|WP_148889617.1\|2247826_2248855_+\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	2.69219e-47
NZ_CP042818.1\|WP_039915057.1\|2243791_2244031_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	7.30117e-12
NZ_CP042818.1\|WP_002698960.1\|2235470_2236064_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	6.7097e-21
NZ_CP042818.1\|WP_148878827.1\|2238304_2239273_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|223301	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis].	1.06375e-119
NZ_CP042818.1\|WP_050778902.1\|2248886_2249705_+\|DUF4198-domain-containing-protein	gnl\|CDD\|227591	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism].	1.8343e-50
NZ_CP042818.1\|WP_024752449.1\|2237801_2238305_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	7.9898e-71
NZ_CP042818.1\|WP_002698955.1\|2237494_2237704_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	8.08952e-13
NZ_CP042818.1\|WP_024752454.1\|2230293_2232699_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP042818.1\|WP_148878828.1\|2232695_2233667_-\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234631	PRK00098, PRK00098, GTPase RsgA; Reviewed.	8.19321e-95

>NZ_CP042818.1|WP_024752447.1|2239605_2243160_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MSEKNLVMIDGNTAAGYVAHALSEVIAIYPITPSSPMGELADEYSAQGRKNIWGTVPSVVELQSEGGASGAVHGALTTGALSSTFTASQGLLLMIPNMYKIAGELTSTVFHVAARALATSALSIFGDHQDVMSCRQTGWAMLASNSVQEVMDSAVIAHAATLEARVPFLHFFDGFRTSHEIQKVEEVSYEVMQKMVNNTLVREHRTRGLTPEKPMIRGTAQNPDVYFQSREVVNKYYQATPAIVQKTMDKFAELTGRQYHLFDYYGAPDAEKVIILMGSGADTVEETVDALNEKGEKCGLVKVRLYRPFDASAFVKALPSTVTAIAVLDRTKEPGALGEPLYEDVRTAIGEMQFKKECPFTHYPLILGGRYGLGSKEFTPAMVKGVFDNLSGKKIANFSVGITDDVTHTSLDYDPSFHLDDKDMHQAMFYGLGADGTVGANKNSIKIIGEATDNNAQAYFAYDSKKSGGFTISHLRFGKNKIRKPYLITQSDFMACHKFTYLETFDMLKTLKKGGTFLLNAPYGKDEIWQKIPVEVQKQIIEKEAKFYVIDAMSIAEKAGMGTRINVIMQTAFFKIFGILPEDEAVGLIKKFTEKTYGKKGAEIVQKNITTIDMALAGLEKVEYPKTADSKVTRHSAMTADAPEFVQNVLGEMALNKGDELKVSQLPVDGTFPTGTTQYEKRSIAEHVPIWDSEVCIQCGQCVMVCPHAVIRMKAYDKKELDKAPKEFKSCAYKGKEFENAAFTIQVSPEDCTGCALCVEQCPAKNKADPTRKAINMESFVEHREVESKNWKFFVNLPDPDARKLNLSVPKGVSMKRPLFEFSGACPGCGETPYIRLMSQIAGDRAIIANATGCSSIYGGNLPTTPYAKRADGRGPAWSNSLFEDAAEFGYGMRLTSDKLAEYAREVAGQLKDKNIAADVIAKILANTQEEDSAVEDQRAFVADLRKELEKSSDPLAKEMLSLTDHLVRRSVWIFGGDGWAYDIGYGGLDHVLASGKNIKVLVLDTEVYSNTGGQMSKATPIGAVAKFAAAGKTTSKKDLGMMAMSYGYVYVARIAMGANMSQTIKAFREAESYDGPAIIIAYSHCISHGINMTKGMSHQKEAVSSGLWPLYRYDPRLVAAGKNPFQLDSKEPDFKLADFMYKEVRFKTLKNANPERAEMLLKAAEEKTRRQWQEYKYLADRPF
>NZ_CP042818.1|WP_148878827.1|2238304_2239273_+|methionyl-tRNA-formyltransferase
MLKILFAGTPECAVPVLHAIAQKHHIVGILTRPPAAVGRSKKLIPSAVALATEVLKSEKRISPAAPLFTPEKLNKDVREAIAAVSPDVMVCFAYGKIFGQSMLDLFPLDAINIHPSLLPRWRGSTPVPAAILAGDTKTGVTVQQMALEMDAGDILAQCTIPLDGSETAESLLNLCAQKSADLTLSVLQKITDKTLSPMPQDHSAATFCGMLTKEMGLINWHNSAEEIDRRHRAFVPWPGTFTYKNNEKLSIQALAIATSENTQNAEPGTILTADKKNGILVQTGKGIISLIQLQRTGKKSLYWKDFLNGSAEFLTGKFNASL
>NZ_CP042818.1|WP_024752449.1|2237801_2238305_+|peptide-deformylase
MEILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRLFVTGVNNEQRVFINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTLQATGLLARVIQHENDHLDGVLFIDRIDEKLREEAIKLFEKKKKPIKKKAAV
>NZ_CP042818.1|WP_002698955.1|2237494_2237704_+|30S-ribosomal-protein-S21
MAYITVDDSENLEKAIKRFKRQVEKEGIIREWKKREYYEKPSTILNRKKKALQRKLMKKNRKTYDSKAY
>NZ_CP042818.1|WP_002698959.1|2236066_2236483_+|hypothetical-protein
MNTECFYAIVLPGNLLSVLYEEQRLFQTLIESQFRKMPPFLKYEKRYDQSVLKISAPELRDGYLIRQCSMQGEKLSECFVLGFGGVHAEKLIKTMPELKAQSKVQNIFLPLQCSNWRLAKVELTHYGTYGICWKLREL
>NZ_CP042818.1|WP_002698960.1|2235470_2236064_+|MBL-fold-metallo-hydrolase
MKIYFHYSIGSFTNSYLVGNEKTSEAIMVDPGRITTEIIHNIEKNNFSLRAVFITHCHATYYDHGLQTIMNVYQPEVFAADTEVDTIKTSVLRGDGLIERAGFTIEYFSVPGYSPDSYMFKIQNVLFTGDSLSAGMIGETANIYAGKNLLKNLHTKILCQDENIILFHGHGPPSSLKSELLYNDELHYPYVSLQPQG
>NZ_CP042818.1|WP_002698961.1|2234946_2235474_+|hypothetical-protein
MFSTNCVLTKDVFLKEYGAEKNINSVNVSDQVFENIDFSEKILTGTCFSNSVFKNCIFDGIRMRMSFFEFCQFQNSSFKNSDIQFSSFSGSSFEKVSFKNSVLLHNNFNGIRADETVFDDSDLYNSRFIAAKLKLTGFNNCNIRKTRFFKNTYDAVSFKSSNTREAFFGKGENPE
>NZ_CP042818.1|WP_024752452.1|2233648_2234452_-|glutamate-racemase
MTKKNEQYQYAFIDSGTGGLPYLQYLHELEPDASMVYVADNAHFPYGKKTKEEVIAFASETVEKLIARFNPEIIIVACNTMSVMALDSLRKKFTLPFVGTVPGIKLAVKQSRNKRIGILATERTVCDPYTERLIEEFGSGCYFEKRADQELIAQIEDGLITDSYEEKLKAIQPALEQFKKANTDSIILACTHFLHIEDVFESAAGSDMQIIDTRSGVIHQALRIAPCKKNPDAPPNSCYATAALDTHIEEQYRMYSKLFQLRWGGAL
>NZ_CP042818.1|WP_148878828.1|2232695_2233667_-|ribosome-small-subunit-dependent-GTPase-A
MGGGSLIRGKVLCGANNFFDVSCEDGTVRYCSIRGKKLEDPVGYYNPLAPGDFVLVDEDTHDKEKGQIVSLEKRKNHFVRWNQKTDKPQILACNIDLLVCVTSPANPPFRPRFIDRVLVQAEAEQIPVLIVINKTDLDTTDEVRLRINDWERIGYETLKLSALNNTGVERFAKRIEGLTVAIIGQSGVGKSTLLNSLDPTLNLRTAEISSKYDRGIHTTTQGILLKATHRFRDGTESKTEVIDTPGIRHFAIWGMKPDELALYFPEMQKLLGTCTFGLSCSHTHEEGCAILHALENGGIHPDRYESWRLISEELEALTAEDYS
>NZ_CP042818.1|WP_024752454.1|2230293_2232699_-|endonuclease-MutS2
MTEHTLEVLEFNKICAAIAAYCVTEEGRAACLQKKPLTDKEKITAEKKLGSDFLSLLQTGAEPPVKKRPPLIEFLQSLGKEGSALSIEGIYSIGISAKHCNELHAWADAFEKANANKTPQQDVLQFIRTFPNLLEVYKAVFSFIDEDGDLKDIPELRSIKNKIAAIESDIEKTMRSYFTDEHTRDLLQTNIPVLRNGRQVLSVRSNFKGRIKGIIHEYSQSGQSFYLEPEEIVFKNNELLSAHAEYDRELQRLLKELTAKIAAYAPALEELSEKLIALDCVSASAKWAKNFHCVFAAQPQKDTAAFFLHQARHPLLGKTAVPIDLKLVANDRLLIITGPNTGGKTVSLKTAALFALMNQTGWPVPAGAQTCLPYFNFIACDIGDEQSLEQSLSTFSAHMQNIAEILRSADKESLIILDELASGTDPLEGGAIAMAVLDELAKRDALVFVTTHHGSLKNYGYTKQNCVNASVEFNESTLSPTYKIIMGVPGESHAIDIAERNGMPQHIIAQARAYIQDNRADVSALIQSLVQKHADLNKFEEEKQIEQQALRSDRRRIDLKELQLKQKELELRKQGYKRLDNLFSDKRRELENLIREIKEGELTSEKTKKVKQWFDNFESELAEEKTGMREENAELTALIKKRSDKNKHQTPQTPFTEGMTVYVSSFRRKGTLIRKEKKDTWLVSFDTVKMVVFENDLQPLESEQQKKQPVQIITEISSDKRPQFELRLLGLRIEAAEKALQDQLDLSAMHGIKEFAVIHGKGSGILQTMVHEKLKQTTFVQNFYFARPEDGGTGKTIVHLE
>NZ_CP042818.1|WP_039915057.1|2243791_2244031_+|ferrous-iron-transport-protein-A
MEFTLIPLIVLKTGEKASVLKFDGTGAEFTRLRSLGIDVNTELTVVTSQADKKGPMLLLVNGAKYAIDYNLASKIFVLI
>NZ_CP042818.1|WP_002698949.1|2244188_2244419_+|ferrous-iron-transport-protein-A
MTLDELEQGKNAVIENLEITGSTLQRLISLGFTPGAEVSVVRKAPFLDPFDISICGSLVAVRRDEAKRIIIRELAE
>NZ_CP042818.1|WP_148889615.1|2244415_2247241_+|ferrous-iron-transport-protein-B
MKQDQIHIAFAGQPNSGKSTLFNMMTGARQHVANYPGITVEKKTGNYQAFGQSVLITDLPGTYSLTSYSPEERVSRNFILFEKPNLLVNITDASNLERHLYLTFQLLEMQCPVIMYLNKTDIATYQGLKIDIDKLSQTLGIPIIAGSAKRKEHAQELKQCIAETTGHTQNPYMLSYGKDMEACLAAIVERLQKAQKNAEDAVPLRWLAIKLCENDSAVRNEQKEKFEEFDSILQYISELEAQHKEKHKHSFEIEIALARAGAAKKIIADCVTKVAADKKTVERVRLKRRIFEGLSALTLFFVTFQILDAVLVMFPGVFQHNSVRLCINLLLSGIFTGGAAFIYVKGGENAVNATDRVDKVLCHRVFGILILVELVLVFYWITVILGYKMTDKVFPVFKFFRSIVSQLIPAQGLISEGLLRGLFLNGIIDGAIMILNYVPIFFCLFALIAFLEDVGYMARLAFIMDRILRKFGLHGQSTLPMILSGVIMGGCVVPGVMSTRTIRDNKSRLVTILILPLLNCMAKIPFYVLITGIFFVRYQWLVLGGISFITLLVALIVAKYFSLYVVQGTPEPFVLELPAYSLPTVRGVLTRTFERLWSFIKKVATTVVAVSVVIWAGVSFPAMGEKEQAVFNTERDTYIHNFVRSLNNSYAPYFTSEKGFLDYQNLTERMYLLETLTSFGGEKAAARSMNRLFLENPEMTKIALRGKLELGDTIHAFKDYFTRYAAAEKDFINAYAKTPDFQKPIMKSAFYGYWQRMNPFFFAIVRTGSISISGTSVVDRDAAAMTRSLRTAFADLKLISVHYHRETLEHSALGYLGKGMEPVTKYAGFDWKINIAILGSFAAKEALVSTLGTIYSVESASEDSGKLLEARIQDKETGMTPLDGLTIMILIALFPPCIATMIATKTETQSIGWTAFSVIYPVVLSSLVAVFVFQFGRLLGF
>NZ_CP042818.1|WP_024752444.1|2247293_2247830_+|hypothetical-protein
MKKIYLLLVLIISAPVLFAHTPLLTVEDNGDGTIYVQGGFSNGASAAGVKLYLTDKNTGEKLWDGEFPAVGEINLEIPAVPYTVTFDAGPGHVVVKDGPLYERGADDAPAQKDATENGGTVTAGSVAAPSASWVPMDTVSAMPSVGPSFTAIAALCLAILNLVLILFLFRKIKNRSSL
>NZ_CP042818.1|WP_148889617.1|2247826_2248855_+|DUF4198-domain-containing-protein
MKKLVLTAFLFTSAFFLFAHFQMIYTSSSIIEQNAKSAGFILTFTHPFESGLTMDIGKNEQGEIKGLKEFYSIHKGKKLDLLSMIKESEFTSAENKASAYTFTLDKDSGFRGGGDWVLVAVPHPYYEASEEGYIQQITKVFINKAGLATDWQTACVKGYPEILPLVKPYDIWKGSIFRAVVLDSNGKPVPFAEIEFAHINYDIDMQAKAFTGKAKLEQAGGGIILADATGVFEFIPPCAGYWGFSALGVGKEKEFSGKALSQDAVIWIEINKDETEPAPASNENEEKTAASEETSASEKDREPRKDDFSPAALIIVILLFAVMFAWPPIFKKMSEKSEKKDS
>NZ_CP042818.1|WP_050778902.1|2248886_2249705_+|DUF4198-domain-containing-protein
MKKNIGILLLLCAIGATVFAHHQMIYTPASVIESNEVNFKITFTHPFVSGHTMDIGKNEQGEIKGFEKFFSVHKGKIQDLLPSLKKTSFSSAENSALAFDLVLDKTNGFRGGGDWALIGVPYPYFEEAEDGYIQQITKVFINKAGLATDWKNRCAEGYPEILPLVKPYDVWVGGVFRGVVVDANGKPAPNIEIEIAYINYDVNMEKSAFEKTPKTNRGDAIILTDSNGAFSFVPTESGYWGFSALGAGNKKEFSGKALSQDAVLWIEASLPK
>NZ_CP042818.1|WP_148889619.1|2249713_2249905_+|hypothetical-protein
MVEKIIIGVAVVAIVLLFVRKYYRIFTGKASACSCGEKNDMKNGCGCCCSACHDTKEKNEGEG
>NZ_CP042818.1|WP_148889621.1|2250140_2251349_+|ZinT/AdcA-family-metal-binding-protein
MLKKTIDIKHISFFMFITVFFIACQSVPKSETETIAKGNEMAAWKGEWVSLDTIKTDAALEDSYTEAAKSMAHYTVEGFKAAVADMYQTPVVKMKFDGTNTVLLTVQNNKGVIVEIPCEYVYKGKVAVIGEKNRFWYTFEAAKNIRELKNAKYLIALPPKQDNNGILHWHARISSHDIDWLVNGKKTWPTYVAESTPQEKMIQNLKESIRTMPTQIPEKPFEQYADGGKWINRPAVFDNTGKEVLAVYEKIIKEFAGKNPKGGDFTKEEIIAEIKKNDKTLNTLDDFTHLSFITEGKKNELIVYKGEKIVFQSEYKRVAQSASKPYITMRAEKKDAGKFSLISFVVVHGAPMYHFHLWYGRNEADLENQEGVPTCFSTTKISNETFANYIEKTCRRTLTAEN
>NZ_CP042818.1|WP_148889623.1|2251466_2252666_+|ZinT/AdcA-family-metal-binding-protein
MSKKRIGTLLVPVFMALAVFFTACQSAPDAESGATPKTGELAGWKGEWISFGDTKDDPSLEAAYKETAEKMPNYTVEGFKAAFAAMYKTPVVKAKFDGSNKVKFTVRDADGKEKEIACEYKYIGKIPVPGYEGSSWEAFEAVKDVRGLSQAKYMVLFPPHSHDGGMLHWHARFGARSAEAIAKDTSFWWPTFVSASMSKEDLLKEAKEGIKAMGSMFDKSPFESYAAQGRWMNSSLIYDNTSKEVSNAFDKIIKEFAGKNPKGGDFSKADIIAEMKKAYGTTDDFSHIEFVTKKGKNELVLYKDGKEVYRAAYKRVADNPSKPGMLAVATDKGGKFKTISLTGAHGTPMHFHLWYGASDIDLTQFTTKPTCIPENTSNADIAVRVEKSCRSVLNSILIK
>NZ_CP042818.1|WP_024752439.1|2253101_2253413_+|hypothetical-protein
MKKRNVILICLLAFGAAFLIAHTPLLLCYDNGDGTITCEGGFSDGSSAKGVEIRVVDNKNKVLIKGKLDKNSEFTFKRPKGNFSVIFDAGPGHVVKVKSEDIE

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Crispr_ID: NZ_CP042818_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_9

2325282-2325370

Orphan

Consensus_repeat	Method
TTGGAACCACGGGCGTCCGTGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_9

>merge|NZ_CP042818|9|2325282-2325370|CRISPRCasFinder
TTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCGTCTGCTTGGAACCACGGGCGTCCATGCCC

>NZ_CP042818|9|9|2325282-2325370|CRISPRCasFinder
TTGGAACCACGGGCGTCCGTGCCC	GTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCGTCTGC
TTGGAACCACGGGCGTCCATGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024751973.1\|2331246_2333361_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP042818.1\|WP_148889643.1\|2327026_2328211_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP042818.1\|WP_148889799.1\|2320882_2322877_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042818.1\|WP_024751965.1\|2311515_2313039_+\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NZ_CP042818.1\|WP_024751967.1\|2317406_2318363_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|276939
NZ_CP042818.1\|WP_002701200.1\|2319205_2320741_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|188306
NZ_CP042818.1\|WP_024751972.1\|2330687_2331245_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP042818.1\|WP_002701185.1\|2313035_2314394_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP042818.1\|WP_024751968.1\|2323244_2325119_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|119335
NZ_CP042818.1\|WP_024751978.1\|2338283_2338604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002701193.1\|2315277_2316381_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042818.1\|WP_002701217.1\|2333341_2334427_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|365808
NZ_CP042818.1\|WP_024751966.1\|2316383_2317406_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751976.1\|2336156_2336627_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751971.1\|2328406_2330488_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
NZ_CP042818.1\|WP_081718639.1\|2335006_2336185_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP042818.1\|WP_044634291.1\|2325428_2326865_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP042818.1\|WP_002701199.1\|2318359_2318989_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP042818.1\|WP_002701187.1\|2314397_2314634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148879630.1\|2336778_2338263_+\|transposase	unknown	unknown	gnl\|CDD\|227708

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_024751973.1\|2331246_2333361_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	2.33767e-61
NZ_CP042818.1\|WP_148889643.1\|2327026_2328211_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.0011291
NZ_CP042818.1\|WP_148889799.1\|2320882_2322877_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.51458e-50
NZ_CP042818.1\|WP_024751965.1\|2311515_2313039_+\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	5.9049e-28
NZ_CP042818.1\|WP_024751967.1\|2317406_2318363_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|276939	cd15830, BamD, BamD lipoprotein, a component of the beta-barrel assembly machinery. BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.	2.5939e-07
NZ_CP042818.1\|WP_002701200.1\|2319205_2320741_+\|ribonuclease-Y	gnl\|CDD\|188306	TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA].	0
NZ_CP042818.1\|WP_024751972.1\|2330687_2331245_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.45121e-15
NZ_CP042818.1\|WP_002701185.1\|2313035_2314394_+\|hypothetical-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.38793e-10
NZ_CP042818.1\|WP_024751968.1\|2323244_2325119_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|119335	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	2.63319e-98
NZ_CP042818.1\|WP_002701193.1\|2315277_2316381_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.36613e-07
NZ_CP042818.1\|WP_024751971.1\|2328406_2330488_+\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NZ_CP042818.1\|WP_081718639.1\|2335006_2336185_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.4159e-13
NZ_CP042818.1\|WP_044634291.1\|2325428_2326865_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.94939e-90
NZ_CP042818.1\|WP_002701199.1\|2318359_2318989_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	1.29904e-112
NZ_CP042818.1\|WP_002701217.1\|2333341_2334427_-\|Hsp70-family-protein	gnl\|CDD\|365808	pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region.	3.40608e-06
NZ_CP042818.1\|WP_148879630.1\|2336778_2338263_+\|transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	4.90001e-14

>NZ_CP042818.1|WP_024751968.1|2323244_2325119_-|beta-N-acetylhexosaminidase
MTDSFLSLLFASLSEDLQAKLTSNPLFKKKRRYVQIENEPHDIAVLDTEDAILLQYTHPYQAGRCIALFFESLAFDLPLPRKEKSRYQSLGLMIDCSRNGVLLPAAFKRLLPHLSLMGYSSVQLYMEDTFTIDEYPYFGYQRGRYTQNELRELDAYAKEYGIELIPAVQTLAHLQQVLKWQAFANLRDCNDILLIDSEETYAFISAMFKSLTESVSSKKINIGMDEAAMVGLGRYLDLHGYTNRYELMLRHFRTVHALAEKQGFTSVYLWSDVFFKLATGESYFSKNLSLHAIDKNIAADIPAGSRLLFWDYALRPSEDYELPMQIHKAFCNNAGFAAGAWKWASFFTCNQFSIAAAVSVHGAAKKTGIQELLVTAWGDDGNEASLFSVLPAVSAWAELCWADSLELLPRRFALCCNADFESFLSLDEPILTPDNPAPGKCTVNPSKYILYQDILAPLFESHIQGESTYAHYRQCAEKMKQAEAKNPAWKELFQTGFALSDILAEKSILPQKIRRAYEAKDSAKLKEIAEKDLPALAQKIQNFISIYSRQWQAENKIFGLDVFDLRMGGLLQRITRAQERLVLYAKGTLRELPELNQKPLSFDPEYPNAMYSPGWKNIATASVL
>NZ_CP042818.1|WP_148889799.1|2320882_2322877_-|HAMP-domain-containing-protein
MLGFLSLYFAKKAVTEKVEAHLTDKAVDTAEIISGRINIFLQFLVNTAKMPIFGDDSVSFEEKARYLGTKVDCPESVYFISIADIRGNLYTHNLKTVNITGQSWFTATMDGKDFISEPFISVVDGDFIMVVGVPIYGKDKHITGSLCMTISGLWLCDNIKDIIVGKTGECYVLDLTGTVIADPDVNLVTSQENTIERAKTDPTLASIAAFEKQAITSENSVIGLYTWEGSDRIASFAKIKKTGWAVIVYAPIDEFMGTIQLLRKSIWITGLLILIIALIIIFITARLIVRPITVTVNALQNIAQGDGDLTVRLPITGNDEITKLSDYFNQTIKKIREAVKQVGDNTIIMEDIGTELSSNMAETASAVHQISTNIDGVKRQALTQAASVTETAATIEEIIRTIKQLNTSIENQAASVEESSSSIEEMVANIGSIGKMLNENKEVIDLLHKQTLLGKEGASIANAEVAKLTEKSDTLMDASQIIQHIASQTNLLAMNAAIEATHAGDTGKGFAVVADEIRKLAEESNAQGKEISAMLKESTKIIEDLAFSGNAAEHVFDEVVSLAKKALQHVEQIDSAMQEQKHGSSEVLTAIKDIHAVTSQVKDGSAEMLTGGESVAQEMQKLDNLTLIITGSMNEMASGIMQINNAVQEVNEITQKNKESIENW
>NZ_CP042818.1|WP_002701200.1|2319205_2320741_+|ribonuclease-Y
MGTTILIGIILVAVGLILGWTIRWLYARFQLSASEQRAERVLQEAKKEAEAQKKDILLEAKEQLIRERNQQERENRERRNDLQRSERRLAQKEDVLDKRLETVEKQEKQLVEREAALNERDKNLSGEEERYRERLEEISGLTQAQARDLIISSLEAEAKHDAQALINKIEEEAHLVAEKKARDILVTTIQRLATDTTSDITVSTVSLPSDEMKGRIIGREGRNIRALETLTGVDIIIDDTPEAVVISCFDPVRKEIARIALERLILDGRIHPARIEEIVQKVTREISQKIYEEGEKVLFDLGIHDMSQEGVRALGRLYFRTSYGQNVLYHSKEVAVLAGMIAAEVGADVEIAKRGALLHDIGKGVETDSDKNHAEIGMEIARKINEDPRVVNAVGSHHNDIEPSCVEALLVQIADAISAARPGARRETMDNYVKRLENLEAIAEGFPGVEKAYAIQAGRELRVLVNNEKIPDQDVKVLGRDIAKKIENDLKYPGRIRVTLIRETRIIEYAR
>NZ_CP042818.1|WP_002701199.1|2318359_2318989_-|ribulose-phosphate-3-epimerase
MRKSFLLAPSLLSADFSKLGSELIYIEENGGKLIHVDVMDGHFVPNLSFGAPVLKSLKGKTSLPFDVHFMVTNPSDFVKDFAEAGAEYFTFHIEAAVHAHRLIGLIREYGMKPGISLVPSTPVSVLQEVLPFADLVLVMSVNPGFGGQKMIPECIEKIRQLKKIREEKKLSYLISVDGGINSQTLPVAAEAGADIIVSGSSFFSGELRV
>NZ_CP042818.1|WP_024751967.1|2317406_2318363_-|outer-membrane-protein-assembly-factor-BamD
MKRYLLLCVCILFSSAFSFSQDYLTAGLDAYARSDWSSAIFSFQKAMKPQSAQYNEAWYWLIMAHASAHNYQIALTQAEKFIQANPRSQRMPEVVYQRGRIFCLCGAHENSINELYAFIKRWANHSQVPSAYYWIGENLYLTGRFPEARSIFSRILIDHPQSAKVEAARYKIALIDQSKTQEELLKLLKMSHEEFLRLTEESEKREKIYNQTIEAYQKKIGEMNKDPRTAELEQLLKEERQKNIELYDALTMVEMKNQELSAALMLSSTEKPPAPEEKSPSLPADYADPNKRRKALEELRTKARKLKFMYDNLLKETK
>NZ_CP042818.1|WP_024751966.1|2316383_2317406_-|hypothetical-protein
MRRFTKKSILIFCIGIGMLVSAAANEALELSSGFLKVMVYPKTGSFTLYRFDVCKKNYTPLYDSTRSGSVNVISLHFNRTVYPLIKKIGSTIFAEKIDNRIVMTFQISKDFKVTQTFYFIPGEKELGGQYLKIDISVHNLSENSVFAAFKALIDSSLGENKKRFLYTDTKRDITSEILLRLDTEKDATIVSSDVNAACLFLLKHPQAITPINVYAANRNRLTGHEWLPHYQQGRSFTKGNSVSDAAMLFIWKEKLLKKGSIMTVSMIVGCADYCLLTAQRIRDSITIAETESERIKKNYDYIQKLLQKIEKVEENPDIVSDEAIYDLTDQTDKAIKDIQE
>NZ_CP042818.1|WP_002701193.1|2315277_2316381_-|hypothetical-protein
MALSVLERAKKKFVQKKYNEVISLLEPCVLDYHESFSFHLYLGLACLHEGVIAGALAYLDRAKQIKIAHPDPDLLCAQAAIALRRRDTNKAVECYLDALEVDPKHLLAKKGLDFIKNNNTPEAIGDFIQSGEIKKLYPQPGVREHHRKLIFSCVGTGILCALGISLGVVFFHSNSSGIRGQRADLSALALVADEESAPLSGEGDFLYTLTNKEVIASYKAAQKYFQSFKDNLAQVEVNRILYSNASPAIKRKAKTLTEYFTVPGFDTIKDSFPYSEVNTNKELYLDCWVVWKGMATNIKQSEQTLSFNLLVGYDTRTELEGVVPIVCNFSLPVDAGKPIQVLGKVQLRNGILYLRGKSIFQSQQPAQ
>NZ_CP042818.1|WP_002701187.1|2314397_2314634_+|hypothetical-protein
MKKAHKVLFLLKIAVNFCILTMVRLLTLAQFQRMFCLTLQRKQAKLVGEVTVNFQNFARAQFQNDVLKHQHYFVKLKL
>NZ_CP042818.1|WP_002701185.1|2313035_2314394_+|hypothetical-protein
MSKISIRIYAIFVTVVIVFTILWFALSVSSAVQKNTEGARVFFSQTAQRFFSLISPEKPVTQANIEEIKKICEDSGVILALHIASPQSKLFNWAKDGEGFKYNKDNELELSDNPLFVKVFSGQLGENQSSILTFTAAINILPTEFIFARFRAVFFIVLFLALLSAILLSLQYIYLPASTKRVQNKEKEKFSFESAEPAATSTTSQMYSQDSNESTDSYDSSKKEAFSFAKKDSDLTLDSLDNLNLYKDYPENNFFDDQEFSKTNTETAPDQTDSTTVEASAFDEPIEENDQRMELGLFTPITGIGWESYLSERLEAELGRATASDNDLTLMLIKIPGVVQESELAVNISHRLVETFQFRDMIFEFGNDGFAGILQDTSLDEAMPLAENLRADILQIEGLDTEAQVFIGITTRTARLTSAERLLEEASGALQKAEESSGANPIIAFRVSASRY
>NZ_CP042818.1|WP_024751965.1|2311515_2313039_+|motility-associated-factor-glycosyltransferase-family-protein
MNKIFTENIAALKKENTRLADILEKTESNSAYSNVFVAKSGELVPLLKNGKPLHSKYDPKKEAQNLLPKESCFVLFCGIGSGVQIKLFLETFPQAFCGVCEADYPTLRSAFDCIDFTEIIANKRLYFFAPISVQRLPQELAERYLPAMHGNFSVYSLSAWTRFFPEEIKLFSHLVDAALDKIRADYSVQAHFGKLWLRNAFINLQTAAKICPCLPKVSLRTQAAVLGAGPSLEEGIKKIQSERSAYTVFATDTAFPACIKQKLIPDFFIGIDPQYLSYAHSFPPLPKNTTAIFDLCACPSAITPFIENKNPLIFAAGGHPLAQLAAEYSPFPYMETSSGTVTIAALSVASSLGFTKPLTFGADFAYINGKPYARGTYLFDLYQKKAVRTAPAETSFSALMFRTQTKKITSDSGITYTTDVLTRYKKSFLSFSSENIWKKEDFSAFPYNEFIQFFLKSLKEERHETSLALLPFFAWYKLKKKKKGENLDSFSIRELVFGEILRYTKLK
>NZ_CP042818.1|WP_044634291.1|2325428_2326865_-|D-alanyl-D-alanine-carboxypeptidase
MQTGKKRSLFYFFLILVVVVFWTSVGSLFLFSRAKKLQNHTALPLSAEEQVLLLEDFYAKYKVEGTPQLANLCPAALMRETKMQNPAPILAAQSVIVANADTGQLLYEYQADRKIPPASLTKLVAMYVAMQAIDSGEITLDQVVVPPRESWAENIPPGSSLLFLGPNQQLTVSELLRGMAVVSGNDAAIALAHTVSGSVPKFVERMNQAVKTLGLKHTVFTEPSGLSEENYTTARDFARFCLVYLREYPENLERFHALQELTYPLSHNVKNLISITQPATNTLLGKLKGCDGLKTGFIYESGFNIALTCKRAGTRILAVILGGAGKTIAQGRAIREKDGEKIMNWAFHNFQTYPLIIEKKALAQIPVIGAARQSSQASVYPIIVFGRFAQNKTTVFRLNEKNTDNSSTELLHLQIHLPKQLYAPLDKGEVIGTAYLMRTVDGKEFPYGSFPLIADRDVSAASDLSKKLDILSLKLFGK
>NZ_CP042818.1|WP_148889643.1|2327026_2328211_-|hypothetical-protein
MNTDKKNTGSLAKDLHEREQELKTAYINFGEKLISDNTFLPERNNEKKTFGEEWNELRQEREKATNTILKIKAITQRQGELVTFEKQLEKISKEHMKDNQRSASDFVLQFYKAYNHLSLECLADLKNKVEDIEEKISELQASIKKQDDEKNDAKFFEKIGLQVKTFSTENKIKYLQEKIKKIIIRESSQILAHSQIQQMYENGEFSDELAESYRILFLNKLKQSENDERKQNLEKEKQSLLEQLKECDCGTNPQKRIAVLTVQFKELDENIDHLCKEAAFQYCEQYLTDEGKEKDSAHSFPAEYAERLHTIAAMRKSIAHLKYSIEQNELIQKHSAEDKKIINFKKSIDDYERGIKEYQQMIESAEKNIEISEAKKQELSQKIDALSAKIEDLN
>NZ_CP042818.1|WP_024751971.1|2328406_2330488_+|elongation-factor-G
MSVSTNDIRTIVIAGHGQSGKTSLTESLLAVSGVIQKPEAVQGGKTVSDYTPEEIERKISIYASLVHLPWKNKTINFWDTPGSSDFIGEVVTAFRSSEIALVLLDSRSGVQIETIKYWRDLDRRNKSRMVFVNKMDEERADFAHCISDIKKQFSVEAFPVTFPMGKGADFKGIVDVLKGKAYEISADGKEKEVDIPAEYMDEYKRQLEILAGAAAEGDEELLIKFIDEGELTSEEIAHGLTLAIKDNRIVPAFAGSALKQSGLTSLLNFITDILPSAEGYLERAEKGEEAVTVKVDETAPLSALVVKTANDQFSGRLSYLKVITGILNADSEVYNVNEQKKERIGKLYRPLGKKLVEIRELVAGDIGVAVKLANAKTNDTFTATADGLPFVKLRTPEPIYSIAVSANEKKNDDKLSEQLFKACEEDMTLSFQFNPETKQNVFSGMGDLHTGIILDRIKKQNKIEIETSVPRIAYRETIRQKAQAEYTHKKQSGGHGQFGRVVLAIQPLARGEHYSFANAVFGGAISKGYIPGVEKGVKEAMEHGVLAGYPVVDVGSTVLDGKEHPVDSSEMAFKIAARNAFKDAMRNAGPILLEPIMNLTVYVDTQYLGDIMSDLSSRRGKILGQSSLANGIEEIRSQVPHKELLRYAIDLRSMTSGTGSFEMSFDHYDPISGKIADEVIAAAKAFIEEQKEE
>NZ_CP042818.1|WP_024751972.1|2330687_2331245_+|DUF2147-domain-containing-protein
MKRVITICLAVLCMACVFSDPAEGFWKSLGRKKAVTGLWRFEVKDNVLYGTCVLAMKEPVDRILTKCKKNYKGYPLDIDLSTQRQIDVPLIYGVQKQSEGVWRDGHIIDARNGRLYTCHITFHPAGTENFKVDTLELRGEIGLGIGMSQYWEPTTAKEINQFILANIEKYGSEETKKNKEKFLVR
>NZ_CP042818.1|WP_024751973.1|2331246_2333361_-|lytic-transglycosylase-domain-containing-protein
MKSLLNKQNLRNGKYHSAFLHKKFLFLCIVFCSSFFSCSTGSNIGKVFSALKDHDYSFFENPTKKTIKLVSRSGAGGLYFVGIHLKNAKNEEDAHKFFVQGTKGKAPFNLLCEEEAAITGTPEQRLLFIETALKTLSKQKTASKELIVKKEHLEDLQEELLFLLKRFDILKNSVKSIYIDTAFQAEKCEYFSEVLEAFPDLPEQFTDLVQARILLFYKDYRPAWQGFQKLLEDPVSVTEYLTDPVLSDIGRAALYGSQNAIEAAMLLRSISDTVKGASDLPKEQNLEFYTNFYAARLYTKAGSEGLKKALSLFQTAQQYAPTPADSDNTLWYYLDTLKKLSFNDFFTALTKTCGTWNDPNWFADLTDYTIVELVGRKQWQRLKILAEALENTALPDRQARIAYVLARSGMLSPEETTVAYQTAFQKDHYSFYYRILAANVLQIPLTDSLYKVRKQRNTHSFFSAEHSMEILRGYAVYELPDLIYPSIAKVYPNISVAEATELSHIQISQNRWADAIKIMSYALHSEDAVFDDEQLKLIYPRPWLDIVQKYAKQYGIAEYVLYALIRSESLFQPAVISHAGAIGLTQLMKPTAADIARKLKITEYDLTDPDTNIQFGTFFITDLIRRWDGAIMPALFSYNAGYARVRNWKKLQKDTPDDLFLETLAYGETRGYGRKILAAAVMYGYLYYNKTPAEIIAEIVGAHD
>NZ_CP042818.1|WP_002701217.1|2333341_2334427_-|Hsp70-family-protein
MASKIGIKLADGRFFPIMDENSLSSEELELTTVRDNQTSVQINLFKKQDVAEPEYIGSLIVEDIKAKPAGDPTIELKLSLDEDKNLSAEAIDVDSGTRQGLKVSLETLDSNAFDIPDFDLSPVNDNIDFGSDPSFDNLAFSAAQESEQKKEKEYKQDHKYEEKEKRGLPLWLLIILVLLGIAILVLAILLLTRSIGRSSKEQDSPAPVEKTIDKKDTEQIESERTQGKTTEPPKPAESEIKATESVQVEKEPDVVQIETKQDEVQKPVQETVQKPAEEPVQKLAQVQETVEKPIADKKETRPEPVTPGAAVRHKIKWGDTLWDLSDTYYKNPWLYKKIARHNKIKNPDLIISGRYIEIPPK
>NZ_CP042818.1|WP_081718639.1|2335006_2336185_+|ATP-binding-protein
MKIHDITFLLREFPMLTKFSVKNFKNFKDWLTFDFTNTKNYEFNKECIRGEVIKTALIYGINGCGKSNLGLALFDIIFHLTDMEKVWKIYGDYRNAKAKNAFIEFKYYFNFNGIILEYHYGKTDINTLLYERIIIHDAIVLEYDRRNSNEKFFKTSLVGTENLIKDLSQIKISVVKYIKSNTVLEINDESEVLQAFFEFTDSMLQFKSLDYRIYQGYEVGSVDVIEYIAKNHTEDFNKFLCEAGFDCHLVSRLVRGKDSLFFEFNGSRIDFLTNASTGTTSLTLFYFWLKRLEEHKASLVFIDEFDAFYHYELSEFVVKQLKKLDCQIILTTHNTWLLNNDLMRPDCCFILKDGKIAPLSSLTDKELREAHNIEKMYRAKVFDNERENIICI
>NZ_CP042818.1|WP_024751976.1|2336156_2336627_+|hypothetical-protein
MSEKILFVFEGKKTEPQIFKNLNKEIFKNKFDLYLCYGSHIYSLYNKLKNDKYLDIVKLLREDHPEELKDIFSSSEVSAVYLFFDYDPQSFENADEIIPEMLEKFNNETEYGKLFISYPMVEAIKDCSSEWNICAYQCNITNPTKFTVIETRPKPF
>NZ_CP042818.1|WP_148879630.1|2336778_2338263_+|transposase
MSIPQSIKQFRPTQFGAVEIRFIGNYYYVYQVSSKWDGAKGRAQKVTGKSIGKITEADGFIPNANGLRLMQQMRSTADVAPTVKNYGAYELLQQLAPELNDKLKQHFPDIFREIRTIALLRLVGSICSDKMIQLLFLDSYMSTLCTDIAVSEASVRKFITLLGSLQEQADAFMRDQVMPANALLFDGTSIFTRSADSLAAKGYNPQHSRGTQARILYVFEKNSHKPVFYRVLQGSIVDKVAFMETVHAAGCKDCVIIADKGFYSKENLAALMNAGLQFILPLRKDTVNVEPAFYENTDDSKWDGVFTYNKRPIWFRKKPSGTKGNFIYTYRDDSRKAELVGQYVEKVEKFYGERTHEPKDVLKKIRMGYFSFCSNLDVSARDIYMNYKERWDIEQCFDYLKNSVSQSASHAHTDEYFRGWAFVNHISLLYYYGLLNALRNTKLDEQYSASDVLKLTKNIYLVDSGDNQGFKLSAIQKRTQRILDTLGIDLLRKN
>NZ_CP042818.1|WP_024751978.1|2338283_2338604_+|hypothetical-protein
MNNITNYKKIVTERNHHKDLLHFSQYTKVLWINIFKAHLKKANCLVNDLNVLPNIDTAKKFSQQIIYNNQLRKFVQPYNCVAILSAFPFFIVEYFTKERIQKEGLL

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Crispr_ID: NZ_CP042818_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_10

2400937-2401085

Orphan

Consensus_repeat	Method
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_10

>merge|NZ_CP042818|10|2400937-2401085|CRISPRCasFinder
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAGCACTGATTTAATCAAGAATACTAAAAATCAGGGCGTGGCGGTGGTTCCACGCAGAAGCGATGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG

>NZ_CP042818|10|10|2400937-2401085|CRISPRCasFinder
AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	CACTGATTTAATCAAGAATACTAAAAATCAGGGCGTGGCGGTGGTTCCACGCAGA
AGCGATGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024752009.1\|2387188_2388169_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239487
NZ_CP042818.1\|WP_024752020.1\|2410673_2411381_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP042818.1\|WP_148889800.1\|2397554_2399591_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042818.1\|WP_002699724.1\|2392913_2393786_-\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|223139
NZ_CP042818.1\|WP_148879431.1\|2393798_2394779_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP042818.1\|WP_024752019.1\|2407950_2409669_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|273349
NZ_CP042818.1\|WP_024752010.1\|2388580_2389777_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NZ_CP042818.1\|WP_024752012.1\|2390635_2392324_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP042818.1\|WP_002701539.1\|2402400_2402769_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002701531.1\|2404211_2404694_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP042818.1\|WP_002701550.1\|2399964_2400492_+\|dentilisin-complex-subunit-PrcB	unknown	unknown	gnl\|CDD\|379569
NZ_CP042818.1\|WP_002701529.1\|2404690_2405884_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP042818.1\|WP_148889653.1\|2389777_2390578_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752018.1\|2405880_2407842_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NZ_CP042818.1\|WP_148879025.1\|2395559_2395742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002699726.1\|2394824_2395298_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|238374
NZ_CP042818.1\|WP_148879026.1\|2402761_2403421_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP042818.1\|WP_039943365.1\|2412175_2413468_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181512
NZ_CP042818.1\|WP_002701535.1\|2403410_2403881_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002701542.1\|2401889_2402351_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235846

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_024752009.1\|2387188_2388169_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239487	cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.10493e-18
NZ_CP042818.1\|WP_024752020.1\|2410673_2411381_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	6.28896e-40
NZ_CP042818.1\|WP_148889800.1\|2397554_2399591_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.08368e-51
NZ_CP042818.1\|WP_002699724.1\|2392913_2393786_-\|NAD(+)/NADH-kinase	gnl\|CDD\|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	7.65872e-76
NZ_CP042818.1\|WP_148879431.1\|2393798_2394779_-\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	1.15559e-44
NZ_CP042818.1\|WP_024752019.1\|2407950_2409669_+\|potassium-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.24986e-92
NZ_CP042818.1\|WP_024752010.1\|2388580_2389777_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	1.64558e-21
NZ_CP042818.1\|WP_024752012.1\|2390635_2392324_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NZ_CP042818.1\|WP_002701531.1\|2404211_2404694_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	1.28084e-56
NZ_CP042818.1\|WP_002701550.1\|2399964_2400492_+\|dentilisin-complex-subunit-PrcB	gnl\|CDD\|379569	pfam14343, PrcB_C, PrcB C-terminal. This domain is found at the C-terminus of Treponema denticola PrcB. PrcB interacts with the PrtP protease (dentilisin) and is required for the stability of the protease complex.	1.83249e-13
NZ_CP042818.1\|WP_002701529.1\|2404690_2405884_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP042818.1\|WP_024752018.1\|2405880_2407842_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	4.55054e-133
NZ_CP042818.1\|WP_002699726.1\|2394824_2395298_-\|chemotaxis-protein-CheW	gnl\|CDD\|238374	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.	5.67371e-47
NZ_CP042818.1\|WP_148879026.1\|2402761_2403421_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.4682e-42
NZ_CP042818.1\|WP_039943365.1\|2412175_2413468_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	7.42202e-161
NZ_CP042818.1\|WP_002701542.1\|2401889_2402351_+\|hypothetical-protein	gnl\|CDD\|235846	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed.	5.18759e-12

>NZ_CP042818.1|WP_002701550.1|2399964_2400492_+|dentilisin-complex-subunit-PrcB
MIKKHAVLFVGFVLISGISLYSYEENLLDLDAQSSATQKNEHFDAAYTILDSGVYSTVRYPKTVVIRNKKTWDKFLKNYNSRLNMAAPDFSKHAVIAVFAGEFSTGGYNLFVESIEKDDDDNELEISFKLSYPSPNETVTQAFTYPFIVVAVEISPHVKIDVDLPDTLEEKMKKF
>NZ_CP042818.1|WP_148889800.1|2397554_2399591_+|HAMP-domain-containing-protein
MVLPLSFFLIAFSLLWYYEASRIIKNNITDKMESKKELYHKSIELFLTQRATIIETLSSVIALNNADTDEMLELCTGCDTAFHHMIFDVYMGFEDGRYIDSSGWKPPAAWDARKRPWYKKALKKKGVAFSEIYVDSVRNIPMVSISIPVMQNKDLLGVLTTNVDMSKLKEMMTKINQGNNTTDIFLLDENGKFLFHNTFTYSDVITEVENKKYANCIKQMFDKDITEFSTVINGEKYFFIKDHFSAVDWTLAIGIPYVDLYRDATNLRIKGNIFAAVFICFYIAVIWSIASRMTKQLKALVSALKNIAEGDADLTVRLPLIGNREITDLSRYFTQAIEKIRLSIKSVSENTDALRAVGENLANNVTETASAINQINMNIDNVKEQSLTQAASVSETAATIEEIIRTIKQHNTGIETQSASIIQSSSSVEQMITSIGQITETLEKTNTVIKDFASATEDGKNTVSESKAVMQKIAEESGGLLEASTVIQHIASQTNLLAMNAAIEAAHAGDAGKGFAVVADEIRKLAEESNTQGKTITTTLKALSEEIETLSNSAKKTEEKFNIIFELSGQVQHMSDRLMEAMQEQANGGAEVLTAIKNINSVTTDVREGSHEMLIGGQGIAEEMRKLDKLTRTITYSMNEMASRALQINAAIKDINEISQKNKESIVNLSVEVEKFKV
>NZ_CP042818.1|WP_148879025.1|2395559_2395742_-|hypothetical-protein
MAKPTLRVLKLCKLFCFKTSFLLGTTGVRARSDCSSGILAYRGWGCEFKSFNFTIGCWRF
>NZ_CP042818.1|WP_002699726.1|2394824_2395298_-|chemotaxis-protein-CheW
MAMTDAQFQLVTFQLGEELYGVDIMDVKEIVKIQDVRPIPNAPYYVEGIFNLRSEIIPIISLHKRFHLKKAVLDAGDEYLGGFIILHIDNNKLGIIIDRVARVIMVKQGDVQPPPQMITGIGTEYIHGVVRQGSGYLIMLDIRKLFNPKELQKLANL
>NZ_CP042818.1|WP_148879431.1|2393798_2394779_-|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MDAVLTCMVEEKIGPGEANQKLIRLIKDSFQVEGAATFRSPAIALAYALRALGLEPGSGVLLSVLAPAWQFTEVQRQGFTPILVDVDAETALMTPSLIADGIQAGGKVVVLHEALGNLPNMQEVLSLNIPVIEDISQSAGAELGEKKSGCFGVFAILGLEERDILTAGGGAALLSAERRNALVLKKLYDVAPPTDILPDINASLAFVQLKQMEKNMQLRQELYELYVRFLMQGRHKTIAPAEGLKNPVYSFPVLLSSGYKDVKQFANKKGVETEPAFSGSIIDTFEKQEEYIQAASLLLRCVLFPLYPRLGMANAEKISKVLRSLP
>NZ_CP042818.1|WP_002699724.1|2392913_2393786_-|NAD(+)/NADH-kinase
MGTTDSRVIIITSTYKPHAVKLSKDIIKFLEARGFSCDQYEYDGMSSENPVKQDYAFAICLGGDGTVLFASRCCAARKIPVFAINFGNFGFIAVVEPEHWQTVLEDYLAGKIKIFERMLLSACILRKRQEFCVFDALNDVVISGSGIAKLVNLEVLFNDVSFGTYKADGVIISTPTGSTAYSAASGGPILDPNVSAFVLTPIAAFSLSNRPIVLPAEGKMTVKVLPTRHRDTILSVDGQELFVLEENDIVSVSASVHKAHLIGCNPEMFYRALRSKLAWSGNSTCPVPIQ
>NZ_CP042818.1|WP_024752012.1|2390635_2392324_-|DNA-repair-protein-RecN
MIENIIVKNIALIDSLSLDFASGFNVLSGETGAGKSILIGALSFLLGGKAGTDILRTGAEEGWVSGSFYLDPQHKAATAWLAERDIEPENGRILLRRSIKQNGRSAAWIQSYPVARTDLEVFTSFLVDIHGQHDHQSLFKIAEHRRFLDAYAGLEEETAAFTALYTELSEKRAELEQLNISEKQLNEKIELLNFAVEEITKAKLKADEEQELEAEENKLLQYEKLYEHIEEADAVLTGERGAVSLLKKAINAFGAAAEIDGTLAENMQRLESAYYDLEDIASNVASYSASMSFDPARLEEVQERLSLIYKLKKKYGNTIAEVLEYCDKAQKELEQLVHNADSKTELESEIQKCTQRLFTSGKALSEKRAAAAKTLQTKVEAILAQLGMPKTKFEVQVQLKDKTGNKQTVGPYGFDSIEFLISPNPGEPLKSLAKIASGGELSRVMLALKTVLAAADEADTLVFDEIDTGIGGEVALAVSEHLKKLSEKKQILCITHLAIIAAHADTQIKIEKTSDGTSTRTSAFIIEGQKRTEEIARMLAGDEVSDVSQKHAQELLQKYGTA
>NZ_CP042818.1|WP_148889653.1|2389777_2390578_-|hypothetical-protein
MANEKNKFYTERLNSYQTEIEQLLVREKNILALISKDEFGKEYKKMMLVEEMLYLTTLYFAKYQLSIALIGGKNEDILNDARKTVYKALIYLEEIVTNFIDVPFSDYKDKVEKIKKIGQRQRYYLIRKMGLVIDMIIDAYGNNTKWKWTFVELEARYATVAKNILDLKDSSATGLDPHSPDYDSTVFHLRLVKQFLAQAADRYREKYEMATFSIEDFRIAIQYLLALRRIHLILNEHEAAEEVKKKAEIWSDKMEKDHQKREARRK
>NZ_CP042818.1|WP_024752010.1|2388580_2389777_-|HD-domain-containing-protein
MFNKAIVLKLFEAFSIQRWNDLIRPFDMVEMDKTAEKMFLAYIIGKYEEKSGKVIDWNKIIDNAFFELLRKIALSDIKAPVQRIIRSEYPEEYQKLNLWVFKKYETLFSGTPLLDDFFAYLNEKSDYNDISLRVLRAAHKYSTIREFEMLKMVNEPFRLSKIAPVLEQDIEDFTDLRGMQLLITKRKPYALITEIEKLRFQIRWNQTPRVPETSVLGHSYFVAALTLLMSKTLGRSRHRTYNNFFGALFHDLPEAVTRDIISPVKQATEHLPDIVKDIEDKIVSEELVPLMDAFYRDEVLYYIQDEFENRILKGGKTCIVDYADLESKYAEPKYKAIDGALIRTADQIAAFVEADSSIEYGIKSDHLLEGRNKILQRYPKGTGVNGLAVDLFFNAYRN
>NZ_CP042818.1|WP_024752009.1|2387188_2388169_-|phosphatase-PAP2-family-protein
MEYFETVESAVHPVLLWGIEVIKTVQFIANPILTKITSILSFLGGEGIVLFALFFIWCIEYRKGLIIFLSLAISNGINSYLKNLFKVPRPFVVDPSVKLEFEKNFSTPSGHSQSSVVFWALLFFYHDESSEKTETKESPTHKKLKAVFMFLIPLYIGFTRVYLGVHYPTDVLFGWVIGAVLSVIALFLLPKILTAVTAFFASAKKISNRRLRGLELAVFALIAVLFVAFDSDPSMGGAVLGLAIGKIFLFDSYAAEFSAASGSVFQKILRYLVGLVLCVGGLLVLKQCFSFAPEEYTRLLRFLRYAIAAALVSGAAPILFLKLRLA
>NZ_CP042818.1|WP_002701542.1|2401889_2402351_+|hypothetical-protein
MAEKNTCIHVLHLIVIILVGIIMIGTVAGLIKASAKQNEIAEEVPPIILQKEDALYGEIGRLRISSADSPPISVIVTPFLQYAKADIALQEELIRKKEILKKVIISWFEKKNAVQLSTFPPDKIKKLLLEELNKQLVLGKIKGIYFEELTLLN
>NZ_CP042818.1|WP_002701539.1|2402400_2402769_+|hypothetical-protein
MTHEAVPAAQIIIAIIPIVGIVTGGSVIFFYLLWRHKQIICQIENNIYIRPSFNLVAFCLLAGIMLTITGFVLTILFAIINGISYVLLGGLIPLAIGISFLSFFYYTTHIDAEILWKGDERA
>NZ_CP042818.1|WP_148879026.1|2402761_2403421_+|RNA-polymerase-sigma-factor
MLKKKILSNNDPKKEQQTQKKIDKEICKAVLNGNTQAFSVLVEKYQQQIYRLGMSFFKNEDDSKDFVQDVMLKAYTALGSFRGDSAFSTWLISIAYNTAINSMRRSQRFVSFAESFEIEAPGETPEERHINNCVKLSIREAVENLCEKYRVCIDLYFFYDMPYADISSITGLPVNTIKSHVFRAKKILREYLTEEQVLFRSNENPSSGIFAIFQLRYDL
>NZ_CP042818.1|WP_002701535.1|2403410_2403881_+|hypothetical-protein
MTCEKIIDTYLKLDKYERVPIGITLHLLRCRSCRETVKKLSKVYTQHRKKEKNPSPELVEDIMQNIYQLSEKPVQTETLSDAKILLWMLTGLLIVIGFIILPFTEIGQWGINHLGIAFIIPFALICAISVSAFYAVFVGKNIDFFVKQFDLPTSLQ
>NZ_CP042818.1|WP_002701531.1|2404211_2404694_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNTIQTITVKSPIGVLRIEETGGVISSVGIHKENAPIVSCTSSSVLNHCVDELRAYFDGKLKRFTVPVIFLGTEFQQRVWKALQEIPYGQTQSYKELAELIGAPKAYRAVGNAANKNPILIIVPCHRLIGSDGSLTGFACGIEAKRFLLEMEKDLQQALR
>NZ_CP042818.1|WP_002701529.1|2404690_2405884_-|DUF1343-domain-containing-protein
MKKLLCIFSLLCCTIFLFAEKIILGIERVYEHRHLFEGKRVGLITNQTGINAKGVSSIDILAEAVNLTALFSPEHGIRGDAREGAAIEDTIDAKTGLTVYSLYGKTKRPTEQMVQDIDILCFDIQDVGARFYTYIYTMAYAMEACAKFNKTFVVFDRPNPISGSAVEGTILDMEYRSFVGYYPIVQRHGMTVGELARLFNTEYKIQCTLHVIAMKNWDRNSYFNSLPLPWIPTSPNIPSAETALLYAGICVFEGTNISVGRGTTMPFQYIGAPFIDAPELADSLNRLNLSGLLFVPAYFTPSLSLHKNIPCKGVQIIVTDKAQCKPVYAGFVILYTIRELYQTDFKIINAPNKYCGLNLLTGTNKITENKLSLTELDALMQKDTKRFMRIRRRYLLY
>NZ_CP042818.1|WP_024752018.1|2405880_2407842_-|penicillin-binding-protein-PBP4B
MKKNVIFVLSILLTACASSPKIIVSPTTAPRFLSEQHEAEFQVDTVFPIDFSNYDDSILTNNFISFIGFSEQGKLYFTAKGIKNFNLYVNGYNINTKKICDQENTCIDISTITKNGKNILYIGNIQIVKKGDQKTETKPFLKLQIPYPEIIYKPTNIGTVDYRAFQLVDSIINAEVQNGFPGAQLVIVKDGKLLKSSSYGNISTVDIFGKPVKKPIPVTNSTLFDLASNTKIYAANFALQKLIYEQKISIHDRVVSFFPEFVDSKKAKFTGKKYITIHDLLTHQAGFPAGARYFAKISKPLTKTIRKKNSKGKIRYVIVVSDEVLSPRERTFRLIMETPLVYKPGTQVLYSDIDYLLLTFIIEKITKMPLDEYVTKNFYKPLNLNSICFEPLKHNFMLDEIAATAITGNTASSTDENKNLRRFLIHGTVHDEEAFHSMEQVSGHAGLFANAESLAVLAQVMLNRGGYGTIKLFDENTVSLFASQSYISPSYGLGWRRQGAQNYAWAFSPLADSNTVGHTGWTGTLTVIDPKKNLIIILLTNAKNTPYPDKKRSAVKTEGDYYLAKCYGAITTILYNAFENTDKDFFDFMLIELVEKKYAMLKAIKNFNNSGYIKDLRALMDTVKSSAKHSSKLRAFLKSPTGKAIEKKLESIK
>NZ_CP042818.1|WP_024752019.1|2407950_2409669_+|potassium-transporter
MKQKNGMLFLAASMSILLIILEEINSFSSVMYIAFGGNILILLLIGATILLPMKNEKYAKIFIQKNLLKLLTIILLIALFVLAKITSGIKTVNIYTLFNLIKNIFLLALVITAIRGQGKISKQAVTNPAQTLILSFLTVIIIGAYLLKFPISSSDHVGLSLLSSLFTATSAVCVTGSTVINVAEQLSGFGKLILILLIQIGGLGFMVLSFFGMLALRRKLSLQDKLIVSYMINEDDMSDLFKGLKVIIIATFTIEAISAFFLFFGFMQIEGFGIKALAYACFHAVSAFCNAGFSLYPNNMESFTGNYIIGLVIPCTIILGGISFVVISEMAMRSKRRIKNLFSAQKKALEPMSLNTYVVLKITAVVLIVSFSGFYLLEHEYAMKDYGLGTQYLASFFQAVTLRTAGFSSLPFGSFRQPTLFFMVFIMFLGGASGSTAGGIKLNTIAAIIASFKSFLKNEQHAKIRNMVLHIKQIEKAFLIFGFGLSVVCVGVFCLSITERFYFLPLLFETVSAFATVGLSTGITPELTVYGQLIIIVLMFIGRVGPLTILTAVSKPEPESNITYAYSSLAIG
>NZ_CP042818.1|WP_024752020.1|2410673_2411381_+|TrkA-family-potassium-uptake-protein
MSIKKNFVVIGLGAFGNKICEILTEGGGNVIAIDKNADTLDKVKNFVSAAILIDTTNEGDLLKAPLDDIDIAIVAIGDNIEASILTTTLLKQRGIPYIVARTISPLHATVLRRVGANEVLNIEVSSATSLARRLVAPDRTNSIAITEDVTIREIIAPKFFDDKTIDDLALRDKFNLKIIAAVRTEIDIDSAGNSIPKKKLYYPDNIFTFKSADRIFVLGKNHDIKELIFTSENLK
>NZ_CP042818.1|WP_039943365.1|2412175_2413468_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKIHPIAKELNEILEQTVAGKLLSNLGKRLFFPKGIIAQGAEVKLKAPNANATIGMMCKNKIPVELNALHDLLPAFSPSEIVAYTPTAGTETVRKLWYNNMLLKNPSLENKKISLPVLVPGLTAGLSFTLDLFLSSKDRLIVPQPAWDNYQLIAEARRNASTAAFPIFDGDNFNIKGFTSCVEREAKSGMLKILLNFPQNPSGYTPTEQEVDSMYSILFEQAEKGVAILIIFDDAYFGLEYESEAIKESLFVRFADAHKNILAVKIDGPTKEDYVWGLRTGFITFASKGFNDIHYETVIKKLLGAIRSSVSCSATPSQTFAVKILENEKTDSEIQNLHTLLNDRYKEVKRVLKKFSSSEKLKPLPFNSGYFMCMHCSGFNAETLRQKLLNEYQIGVVAVDDCHIRIAFSSLDIENIEPVYTAIFEAAENL

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Crispr_ID: NZ_CP042818_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_11

2420372-2420484

Orphan

Consensus_repeat	Method
CTGCGTGGAACCACCGCCGTCCATGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_11

>merge|NZ_CP042818|11|2420372-2420484|CRISPRCasFinder
CTGCGTGGAACCACCGCCGTCCATGGCAAAATTATACCGTGCGAGTTTTAAAGCTTTGTAAACTATTTTGCTTTAAAACGTCGTTTCTGCGTGGAACCACCGCCGTCCGTGGC

>NZ_CP042818|11|11|2420372-2420484|CRISPRCasFinder
CTGCGTGGAACCACCGCCGTCCATGGC	AAAATTATACCGTGCGAGTTTTAAAGCTTTGTAAACTATTTTGCTTTAAAACGTCGTTT
CTGCGTGGAACCACCGCCGTCCGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024752027.1\|2422463_2425214_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP042818.1\|WP_024752028.1\|2425662_2427438_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042818.1\|WP_002701513.1\|2413532_2414525_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|285027
NZ_CP042818.1\|WP_024752030.1\|2429411_2430611_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236182
NZ_CP042818.1\|WP_039943365.1\|2412175_2413468_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181512
NZ_CP042818.1\|WP_024752024.1\|2416085_2418218_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP042818.1\|WP_024752019.1\|2407950_2409669_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|273349
NZ_CP042818.1\|WP_024752020.1\|2410673_2411381_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP042818.1\|WP_148879032.1\|2432448_2436057_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_CP042818.1\|WP_148879839.1\|2418221_2419562_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|225118
NZ_CP042818.1\|WP_039943366.1\|2415325_2415730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP042818.1\|WP_024752034.1\|2437951_2439496_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP042818.1\|WP_024751799.1\|2440405_2441353_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP042818.1\|WP_148889657.1\|2436441_2437938_+\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|225533
NZ_CP042818.1\|WP_024752029.1\|2428091_2429282_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP042818.1\|WP_024752031.1\|2430760_2431960_-\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|168478
NZ_CP042818.1\|WP_148889655.1\|2415743_2416055_-\|anti-sigma-factor-antagonist	unknown	unknown	gnl\|CDD\|132914
NZ_CP042818.1\|WP_024752022.1\|2414487_2415333_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350624
NZ_CP042818.1\|WP_024752018.1\|2405880_2407842_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NZ_CP042818.1\|WP_148884097.1\|2420569_2422054_-\|transposase	unknown	unknown	gnl\|CDD\|227708

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_024752027.1\|2422463_2425214_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP042818.1\|WP_024752028.1\|2425662_2427438_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP042818.1\|WP_002701513.1\|2413532_2414525_+\|AAA-family-ATPase	gnl\|CDD\|285027	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	5.58739e-89
NZ_CP042818.1\|WP_024752030.1\|2429411_2430611_+\|threonine-ammonia-lyase	gnl\|CDD\|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NZ_CP042818.1\|WP_039943365.1\|2412175_2413468_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	7.42202e-161
NZ_CP042818.1\|WP_024752024.1\|2416085_2418218_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	1.6973e-43
NZ_CP042818.1\|WP_024752019.1\|2407950_2409669_+\|potassium-transporter	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.24986e-92
NZ_CP042818.1\|WP_024752020.1\|2410673_2411381_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	6.28896e-40
NZ_CP042818.1\|WP_148879032.1\|2432448_2436057_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_CP042818.1\|WP_148879839.1\|2418221_2419562_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|225118	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription].	3.9803e-46
NZ_CP042818.1\|WP_039943366.1\|2415325_2415730_-\|hypothetical-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	0.00150067
NZ_CP042818.1\|WP_024752034.1\|2437951_2439496_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	2.72909e-120
NZ_CP042818.1\|WP_024751799.1\|2440405_2441353_+\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	8.56589e-112
NZ_CP042818.1\|WP_148889657.1\|2436441_2437938_+\|aromatic-amino-acid-lyase	gnl\|CDD\|225533	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism].	5.07671e-151
NZ_CP042818.1\|WP_024752029.1\|2428091_2429282_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	6.91226e-76
NZ_CP042818.1\|WP_024752031.1\|2430760_2431960_-\|methionine-gamma-lyase	gnl\|CDD\|168478	PRK06234, PRK06234, methionine gamma-lyase; Provisional.	0
NZ_CP042818.1\|WP_148889655.1\|2415743_2416055_-\|anti-sigma-factor-antagonist	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.53772e-18
NZ_CP042818.1\|WP_024752022.1\|2414487_2415333_-\|M15-family-metallopeptidase	gnl\|CDD\|350624	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins. This L,D-carboxypeptidase family includes LdcB LD-Carboxypeptidase from Streptococcus pneumoniae, Bacillus anthracis, and Bacillus subtilis, and L,D-carboxypeptidase DacB from Streptococcus pneumonia and Lactococcus lactis. These enzymes are active against cell-wall-derived tetrapeptides and synthetic tetrapeptides lacking the sugar moiety but are inactive against tetrapeptides terminating in L-alanine. L,D-carboxypeptidase DacB plays a key role in the remodeling of S. pneumoniae peptidoglycan during cell division. It adopts a zinc-dependent carboxypeptidase fold and acts as an L,D-carboxypeptidase towards the tetrapeptide L-Ala-D-iGln-L-Lys-D-Ala of the peptidoglycan stem. This family also includes vanY D-Ala-D-Ala carboxypeptidase which is vancomycin-inducible and penicillin-resistant. VanY hydrolyzes depsipeptide- and D-alanyl-D-alanine-containing peptidoglycan precursors; it is insensitive to beta-lactams. All these enzymes belong to the MEROPS family M15 subfamily B.	1.17207e-64
NZ_CP042818.1\|WP_024752018.1\|2405880_2407842_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	4.55054e-133
NZ_CP042818.1\|WP_148884097.1\|2420569_2422054_-\|transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	2.01247e-14

>NZ_CP042818.1|WP_148879839.1|2418221_2419562_-|SpoIIE-family-protein-phosphatase
MALLITNYESFSEFTLRDKFFLASFIFMIFALTASGISEYISSQIKKNVYLQTETALFNNFIERLRFCYRHEELVAAIQEELEYQADCAVLLANTKTEHVIYNSTSAFISDPETYDLMRRRFSTDWTWYWAEGLYFFDTNMQLVGDKRKARGLFIASGDIRFFLICRFIRNTEPEIFPILLHEFNDYLNREKTLGQLLYYSQLFQEWSMVANTQRSFLPKKLPDTTSIEVGAYFQPLVHVSGDYYDIIKIDEDKTLLVTGDVSGKGLAAALVMGIIMNTIQIIENKEDLAGIIYAIDTAIKRMKLQDKYTVLFLGLIDTKKMTIKYVNASMEKPFILTESRPTFKVKTLESNCSVVGIIDLDEVIVEERPLYHGDVILMLSDGIPETMDANGIELGETDYYLDSIKEFAHNPPAEMVKNIADMALSFSANNAMRDDVTIVAVKLKR
>NZ_CP042818.1|WP_024752024.1|2416085_2418218_-|SpoIIE-family-protein-phosphatase
MGLLFFAYFFAVIIILDSVYLKFNDRQSSVFLRRIAHTAGIAALLSAVSISFVMYNKVEAQAFMFKLAMVAFTLTSHSLLNMTFKVPYFEKNKTFSILNFLLHTFGIFLVFFAVGRFSWNSIVSFKFYSKKILPFLTGAELYVYIFLFAVPVVSFILLVVKAFKIKSNIYRQQLILIAFSVLAALISWIVIVRLFAFFPWVFSLFPIGILCVLFISQAAFSLTSVFDLKQILLSFARFIFFTLMFALTAGLAAAFIVQTSPTLRMLLLGGIITSFILFITRDFITKKFAFLLGDTSDYESKLTEELQQFDYTLGRDSILQSFVELMKTRIDCCGLGILITDENGVFKTVYSDFEKRLSIPTGKKCFAFLMNRNVSVITKTEIVANYIYENIKSEMLDVFTEMDAQTIILIREGQKLIGCIGLGAKNRGAEYNQYDIRVLRNIYSYFFLIIYYLSNIAKQDIILTVDREVEMSDQIIGSIQKNMDKIENKAITVGSVSYSAHQLGGDFIDFIKLTEDRFLFLIGDVAGKGLAASMSMVILKSVIHTFLQETGDFKKLIIKINSFVKDNLPRGTFFAGLFGIIDFPTNTVYYLNCGIPLMAMYIQTYQNVIEVQGEGRVLGFVKNIAPFLKVRKITLHPKDVVVFTTDGVLEAQNLRGDRFGNDRVNRILQANKDKNTEEIAKDIYSGLLDFISNEIQDDVTILVMKNNEKP
>NZ_CP042818.1|WP_148889655.1|2415743_2416055_-|anti-sigma-factor-antagonist
MESVQITEKITPDYILLSVVGSINSYTYQEFESKIYSSIKENNIVLELSNVTNMSSSGLGVLMSAHDEGEEHGHKLYILAPSEIVRLAIDSTGFSEMLPSFTL
>NZ_CP042818.1|WP_039943366.1|2415325_2415730_-|hypothetical-protein
MSRVCRLTVTPDTKHLAQLEALIETSPAIPDNKRMNILIIVTEMFDNIAEHALIPDGQSVTMEIKISKQNTIVTFIYKTKNFEELLEGVHTGRPHFDKNAKRYRGLGLIMSKNLSQKVKYKKSIFNTARLIFYV
>NZ_CP042818.1|WP_024752022.1|2414487_2415333_-|M15-family-metallopeptidase
MYKKRIGLCFLICIFFAGYSKAHSDDSFQKEKNTMIPLTVSPAEKIFVAPSSIPKKIIENIIQNQKEFIFELSEVLAEEKEYLLILVDKQHPLPDGYTPKNLVALTNTRAYAINRSDLSLTKTAEEALHIMARAARKDGVTLLVSSSYRSYLYQVNLFARYVRESGEKAAERFSARPGTSQHQLGTVVDFGSITNEFANTRAGKWMEAHAGNYGWSLSFPKDYETVTGYVWESWHFRYIGIKACRLQKKWFNDIQQYMLEFIDAWKRQVVTAEEQPKAISE
>NZ_CP042818.1|WP_002701513.1|2413532_2414525_+|AAA-family-ATPase
MEMQKPVEIIQRFKQEMKKTIIGQDALIEGILTAYIAKGHVLLEGVPGLAKTLIVKTFASIVGLDFKRIQFTPDLLPADLIGTLIFNQAQADFSVKKGPIFANIILADEINRAPAKVQSALLEAMAEGQVTIGEKTYILPEPFFVLATQNPIEQEGTYPLPEAELDRFFAKLFVPYPSFEEEKKIITGFSDIVTNAESERQDTIKILSKEELGVLQTAAHAIHCDETLVEYIASIVAATRPITEKSDTVTKGSYLSYISFGASPRAGIALYKAAKIKALFSERDYVTPQDIKDCAPAILRHRLKLSYEAIADNLSADDIILKLLSVVPQP
>NZ_CP042818.1|WP_039943365.1|2412175_2413468_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKIHPIAKELNEILEQTVAGKLLSNLGKRLFFPKGIIAQGAEVKLKAPNANATIGMMCKNKIPVELNALHDLLPAFSPSEIVAYTPTAGTETVRKLWYNNMLLKNPSLENKKISLPVLVPGLTAGLSFTLDLFLSSKDRLIVPQPAWDNYQLIAEARRNASTAAFPIFDGDNFNIKGFTSCVEREAKSGMLKILLNFPQNPSGYTPTEQEVDSMYSILFEQAEKGVAILIIFDDAYFGLEYESEAIKESLFVRFADAHKNILAVKIDGPTKEDYVWGLRTGFITFASKGFNDIHYETVIKKLLGAIRSSVSCSATPSQTFAVKILENEKTDSEIQNLHTLLNDRYKEVKRVLKKFSSSEKLKPLPFNSGYFMCMHCSGFNAETLRQKLLNEYQIGVVAVDDCHIRIAFSSLDIENIEPVYTAIFEAAENL
>NZ_CP042818.1|WP_024752020.1|2410673_2411381_+|TrkA-family-potassium-uptake-protein
MSIKKNFVVIGLGAFGNKICEILTEGGGNVIAIDKNADTLDKVKNFVSAAILIDTTNEGDLLKAPLDDIDIAIVAIGDNIEASILTTTLLKQRGIPYIVARTISPLHATVLRRVGANEVLNIEVSSATSLARRLVAPDRTNSIAITEDVTIREIIAPKFFDDKTIDDLALRDKFNLKIIAAVRTEIDIDSAGNSIPKKKLYYPDNIFTFKSADRIFVLGKNHDIKELIFTSENLK
>NZ_CP042818.1|WP_024752019.1|2407950_2409669_+|potassium-transporter
MKQKNGMLFLAASMSILLIILEEINSFSSVMYIAFGGNILILLLIGATILLPMKNEKYAKIFIQKNLLKLLTIILLIALFVLAKITSGIKTVNIYTLFNLIKNIFLLALVITAIRGQGKISKQAVTNPAQTLILSFLTVIIIGAYLLKFPISSSDHVGLSLLSSLFTATSAVCVTGSTVINVAEQLSGFGKLILILLIQIGGLGFMVLSFFGMLALRRKLSLQDKLIVSYMINEDDMSDLFKGLKVIIIATFTIEAISAFFLFFGFMQIEGFGIKALAYACFHAVSAFCNAGFSLYPNNMESFTGNYIIGLVIPCTIILGGISFVVISEMAMRSKRRIKNLFSAQKKALEPMSLNTYVVLKITAVVLIVSFSGFYLLEHEYAMKDYGLGTQYLASFFQAVTLRTAGFSSLPFGSFRQPTLFFMVFIMFLGGASGSTAGGIKLNTIAAIIASFKSFLKNEQHAKIRNMVLHIKQIEKAFLIFGFGLSVVCVGVFCLSITERFYFLPLLFETVSAFATVGLSTGITPELTVYGQLIIIVLMFIGRVGPLTILTAVSKPEPESNITYAYSSLAIG
>NZ_CP042818.1|WP_024752018.1|2405880_2407842_-|penicillin-binding-protein-PBP4B
MKKNVIFVLSILLTACASSPKIIVSPTTAPRFLSEQHEAEFQVDTVFPIDFSNYDDSILTNNFISFIGFSEQGKLYFTAKGIKNFNLYVNGYNINTKKICDQENTCIDISTITKNGKNILYIGNIQIVKKGDQKTETKPFLKLQIPYPEIIYKPTNIGTVDYRAFQLVDSIINAEVQNGFPGAQLVIVKDGKLLKSSSYGNISTVDIFGKPVKKPIPVTNSTLFDLASNTKIYAANFALQKLIYEQKISIHDRVVSFFPEFVDSKKAKFTGKKYITIHDLLTHQAGFPAGARYFAKISKPLTKTIRKKNSKGKIRYVIVVSDEVLSPRERTFRLIMETPLVYKPGTQVLYSDIDYLLLTFIIEKITKMPLDEYVTKNFYKPLNLNSICFEPLKHNFMLDEIAATAITGNTASSTDENKNLRRFLIHGTVHDEEAFHSMEQVSGHAGLFANAESLAVLAQVMLNRGGYGTIKLFDENTVSLFASQSYISPSYGLGWRRQGAQNYAWAFSPLADSNTVGHTGWTGTLTVIDPKKNLIIILLTNAKNTPYPDKKRSAVKTEGDYYLAKCYGAITTILYNAFENTDKDFFDFMLIELVEKKYAMLKAIKNFNNSGYIKDLRALMDTVKSSAKHSSKLRAFLKSPTGKAIEKKLESIK
>NZ_CP042818.1|WP_148884097.1|2420569_2422054_-|transposase
MSIPKSIKQFRPTQFGAVEIRFIGNYYYVYQVSSKWDGAKGRAQKVTGKSIGKITEADGFIPNANGLRLMQQMRSTADVAPTVKNYGAYELLQQLAPELNDKLKQHFPDIFREIRTIALLRLVGSICSAKMIQPLFLDSYMSTLCTDIAVSEASVRKFITLLGSLQEQADAFMRDQVMPANALLFDGTSIFTRSADSLAAKGYNPQHSRGTQARILYVFEKNSHKPVFYRVLQGSIVDKVAFMETVHAAGCKDCIIIADKGFYSKENLAALMNAGLQFILPLRKDTVNVEPAFYENTDDSKWDGVFTYNKRPIWFRKKTSGTKGNFIYTYRDDSRKAELVGQYVEKVEKFYGERTHEPKDVLKKIRMGYFSFCSNLDVSARDIYMNYKERWDIEQCFDYLKNSVSQSASHAHTDEYFRGWAFVNHISLLYYYGLLNALRNSKLDEQYSASDVLKLTKNIYLVDSGDNQGFKLSAIQKRTQRILDTLGIELLCNN
>NZ_CP042818.1|WP_024752027.1|2422463_2425214_-|preprotein-translocase-subunit-SecA
MLADTIIKFFFGSQHERDLKALLPILHKINAKEAWALRLSEADFKQKTADFKERFQKGESLDDFVPEAFAMAREAARRILGERPYDVQMLGSLVLHSGRIVEMKTGEGKTLMSVAAAYLNSLSGKGVHVVTVNDYLAERDTEWMRPVYEYLGVSVGTILSNMDNDARKIAYNCDITYGTNNEFGFDYLRDNMQLSLDEKTQRGFSFAIVDEIDSILIDEARTPLIISGSAEDDTQRYFEVDKLINQLTEVQKNPETGEYPNEVEGEEVIGDYIIDEKSKRVSFSGPGMLHIQDILLNQGLIQGSLFDEENFEYIHYFTQSVRAHILYHIDVDYVVKDGQVQIVDEFTGRILEGRRYSDGLHQAIEAKEHIRIAQRNRTMATVTFQNFFRMYDKLSGMTGTADTEAVEFNKIYKLDVVVIPTNLPVARKDEHDVIYMNEDEKWAALCDEIADAYKRGQPVLVGTVSIEKSEKLSALLTRKGVRHEVLNAKNHAREALIIAEAGAKGSITIATNMAGRGTDIKLGGNPEFRAKKRAGTEATHEEYLRAYEDEYKKWQDEYEKVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGRSKFFLSLDDDLMRLFGGESLKRFMGKVGMEPGEPIEHPWLNKSIEKAQTKVESRNFDIRKHLLEYDDVLNEQRSFIYEQRDSILADSNLSERIYVTILEYLDEGFADLKGGSKKEKEEVITAFQAELKRLFNYTLDAEDIPLLDSKEAESVKTKIFEAIKANIEEKIALAGAENINMFLRYQYLQAIDKKWLDHLENLESLREAVYLRSYGQKNPLTEYKLEGFDIFYSMLDEIRLSIASRMALVTVRTDDDSSAGRQVRRRQGTAQHNSMEAFHSHGASPMGASSQPDKVQVVRTMPKVGRNDPCPCGSGKKYKHCCGR
>NZ_CP042818.1|WP_024752028.1|2425662_2427438_-|ABC-transporter-ATP-binding-protein
MKDYTDKIKTSVLIKRFLPYFRKYYGVLALDLTCAFFTTLCEIVFPLMVRNITNKAIWDISTLTMDFVIKICIIYFLLRLVDTAANYYMASVGHIMGAKIEKDMRRDLFAHLQKLSFSYFDNTKIGQIMGRITSDLFEIAEFAHHCPEEFFIAGVKILISFIILCQANILLTVIVFSVIPLMIISTVYFRRRMRLAFKRSREQIGDLNARVEDSLLGVRVVRSFANEETEEQKFERGNNGLLNIKRYQYRYMAGFKAVTQFFDGLMYVTVLLCTAYFLIKGKITAGDMIAYMLYVSMLLASIKRIVEFAEQFQRGMTGVERFIEIMDAKVEITDREGATEIKDAKGDILFDKVSFQYPEHDKVVLSNIDLHVRPEQKIALVGPSGGGKTTLCNLIPRFYEVSKGRILLDGKDIRDITQESLRSQIGVVQQDVYLFSGTVSENIEYGKIGASREEIIEAAKKAGAHDFIMELEDGYDTCVGERGVKLSGGQKQRISIARVFLKNPPILILDEATSALDNENERIVQKSLETLAKGRTTFTIAHRLTTIRNADTILVLTENGIEESGSHETLMKKKGRYYSLYQLYGQGYFEE
>NZ_CP042818.1|WP_024752029.1|2428091_2429282_+|dicarboxylate/amino-acid:cation-symporter
MKKFGLLPRLILAIVLGIVIGFVAPLPVVRTLATFNGLFGNFLSFVIPLIIVGFVAPGIADLGSGAGKSLAITAGLAYGSTITFGTLAYIAGSIFLPIFTRGGSMHVFEQTDAVTPFFNSPMPPIFGVTTALILSFILGVGIASLGEKRDALKNMVHEFADIVTKLIKIIVIPLLPVHICGIFATMAHEGTVARVMSVFAKVFILIIIMHWLTIFIQYTLASLIGGGNPFSKIRVLIPAYLTAIGTQSSAATIPVTLAQTIKMGVNKGVAEFVIPLCATIHLSGSTITLLTCSMTIMFLNGMDTSFTAIFPFILMMGVTMVAAPGVPGGAVMAAIGIMESMLGFDKSMIALMIALYLAQDSFGTACNISGDGAIACIVNKINGYKLTPGQKTELVK
>NZ_CP042818.1|WP_024752030.1|2429411_2430611_+|threonine-ammonia-lyase
MINLQMIHEARQKVSEIINATPIFTASRLGDNIYIKMENLQKTGSFKIRGAYNKISNLTDEEKKKEVIACSAGNHAQGVALSATKQGIKSYICVPSVTPLSKIDATKGYGGEVIVVEGSFDDAMKRALELKEEHNYTFIHPFDDEYVIAGQGTIGLEILEQLEDIENIIVPIGGGGLISGIALAVKETNPKVKIIGVEPENAASMRDSIKANKRMLLDSVNTIAEGVAVKIPGEQTFALVKKYVDEIVTVSESEISNSILRLLEEGKTTAEGAGACSIAAAISDKYSFKGKTVCVLSGGNINVNMISKIIKTGLFGSGRLTEVVTTLVDKPGELVKILEIVKKCGANVLNINQYSESSHMQLNTMVVRIVLETFNETHQRAVWQALRDAGYEHFREAIY
>NZ_CP042818.1|WP_024752031.1|2430760_2431960_-|methionine-gamma-lyase
MDKDELKNMGFASKQIHAGYTKNTYGALATPIYQTSTFVFDSAEQGGRRFALEEAGYIYTRLGNPTTSAVEEKLTCLENGEACVATSSGIGAISSSLWTLVSAGDHIVAGKTLYGCTFSLLSRGLTRFGVDVTFIDTRDPENLRKAMKPNTKVVYLESPANPNMYLCDIQALSAIAHQNSDCKVIVDNTYMTPYLQRPLNLGADIVVHSATKYLNGHGDVIAGFAVGKKDVIDQIRFLGIKDMTGSVLGPFEAYLIGRGMKTLDIRMEKHCANAQKVAEFLETHPTVESIAYPGLPSFPQYELAKRQMALPGAMIAFTVKNGLEAGRKLMNSVKFATLAVSLGDAETLIQHPASMTHSPYTAEERAASDIAEGLIRISVGLEDAKDIIDDLRQALNTLI
>NZ_CP042818.1|WP_148879032.1|2432448_2436057_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MQKKTQTMTGNNAASYVAYAFTDVAAIYPITPSSDMAELIDSWSANGKKNIFGQTVLVSELESEAGAAGAMHGALSAGALAASFTASQGLLLMIPNMYKMSGELLPGVLHVSARALSSHALSIFGDHQDVMACRQTGFGMLASGSVQEIIDLGGIAHLAAIKGRVPFMHFFDGFRTSHELQNVELIDYEDFAKMIDWKALNDWRTTAMNPEHPFTKGTAQNPDIYFQAAEASNRFYIDAVEIVADYMKQISSLTGRTYKPFDYHGAADAERVIVAMGSITETAEETVDYLVSQGEKVGLIKVRLYRPFSPQYLFEVMPKTVKKIAVLDRTKEKGALYEPLHLDILGAYIDVPNKPIIVGGRYGLASKDTTPTMVKSVFDNLKSDTPKNNFSVGIEDDITHLNLPMPEEIKTEPTGNIRCKFWGFGSDGTVGANKSAIKIIGDSTGMYAQAYFAYDSKKSGGVTVSHLRFGKKPIKSAYLISDADFISCSKQSYVHQYDLLKGLKKGGTFLLNCLWSDAELENTIPAAMKKFIAKNDIKFYTINATEIAQKIGLGHRINMIMQSAFFKLAEIIPIEQAVESLKSSILSTYGKKGDDIVKMNYTAVDMGIESPHQVTVPKSWADAEDKSIDNAHLPPYIRNILVPINRLEGDRLKVSAFKGVEDGRMPNCTSRFEKRGIAVEVPHWIKENCIQCNQCSFVCPHAVIRPFLLNEKENSAKPQVFETIKANGKGLEDMTYRMQVSVLDCTGCSNCANICPAKNKALVMKPLAEEEAQAANWDFAVDEVSNKHGVMDQFSVKGSQFKQPLLEFHGACAGCGETAYATLVTQLFGDRMMIANASGCSSIWGGSYPTAGFSYNEKGKGPTWASSLFEDNANYGYGMALGTRKLREQAEDYMKKFLELNVGTDFTPLFKEWIENKKNLAANVITCDKIKALFDKHQKPVNQIIKNTPEADYLPKPESHVFKYDTGNIEADRLLEYIYKLKDFLVKKSVWSFGGDGWAYDIGYGGLDHTMASGEDFNILVFDTEVYSNTGGQSSKSTPTAAVAKFAAGGKRMRKKDLGAMLMTYGYVYVAQVSLGANMNQLVKALKEAESYDGPSIVLCYAPCVNHGLRSGMGRSVEQEKKAVEAGYWHLYRFDPRLKKEGKNPFQLDSKEPTASFQDFINSEVRYTSLKKTFPDVADELFLKAEEDAKDRYDRYKKMAQN
>NZ_CP042818.1|WP_148889657.1|2436441_2437938_+|aromatic-amino-acid-lyase
MDTLLLTGTPLSLDDVYSVAYDRRSVEISEEAEKRVQTARQILFDMAAEGKPVYGLNRGVGWNKDKEFDSEFFATYNRNLLNSHCLGVKPYHTDEQVRAILLLRLNKALTGHTGISAELLYHYRDFLNYGIHPKIPMRSSIGEGDITTLSHIGLAFIGEEDVSFNGETMNSRVAMEKVGLKPAKLGPKDGLSIVSCNAQGEAMTAIVLKEIEDVIQISNLIFCLSLEGLNGVVQSLREDVNAVRGIKGQIKAAKMCREFLKGSFLYDFDPERALQDPLSFRCAHAVNGSMYDAMEYVKEQLLITMNTTDDNPCILIDEHTAFVSANFEITSLAIGVEMLATALSHISKTSCYRMIKLADPAFTKLNRFLTPEDVKTIAFGTIQKTFTMLDTQNRGLANPSSMDFYSLAGTIEDHASNLPLACYKIFQMIDNIYYVIGIEAMHAAQAIDLRKNYKLGAGTKKAYALIREVLPFYSEDRNLSKDIEKIYEFIKSKKLLHI
>NZ_CP042818.1|WP_024752034.1|2437951_2439496_+|BCCT-family-transporter
MAENQKKEIRWAVFIPALAFVLIAAITGIVSNETLTSVSNSFFAWSLESFGWLYQITLIAVLIITCVIMFSKLGSVRIGGKDAKPKYSFGTWFAMTLTGGVATGIVTWGVNEPIIYLGNIWGELDAVGITPGTPEAARFAMGRCFYNWTFIPYAIYALAGVVVAYVYFNKKQQLNVTSTLEPLFGEKIKKGIIANIIDTLSMLAIAIGLCTALTMCITLITTGLNASYGVTNNLKLFVIVGVLIVAMFTLSSYVGLDNGLKKLAGINAYFYYGLLLLLLVTGPTLYIVRNTTAGMAVWLDKFWLWGLDPIDIGGAPLTRSWTLFDFAFWVAYAPVTGIFLGQISYGRTIRECLIVNLVLPSVFGIIWFGVWGSTAMNMQLTGQLDLVAIIQNSNAVMGLFEFIKNMPLAVILVPVNLFVILISFVTAADATANNVASMCIKNIPIGSEAPRYLKALWGIIIGIIAIVMAAFGGGEQGVAGVKSLAAAGGFIVLFIFILQVISAVKMFFVDKIVE
>NZ_CP042818.1|WP_024751799.1|2440405_2441353_+|sugar-ABC-transporter-permease
MQKKLKEAKGKRHFFDESFELALLSLPTTIWYFLFSFLPMFGVIIAFKNYRIFGPGFIGNLIKSKWVGFDNFAFLFKTKNAWLIVRNTLGFNAIFIVLGIVIPISLAVLLSLLYNQRLGKIYQTMMFLPHFLSWVVVSYFLYAFLNAQNGLFNHLIVKYGGTPIQWYAEKAYWPWILIFMSVWKGMGYGTVMYLAAITGIDKSLYEAAYLDGASRWQGVKYITIPSLKSLVIILFIMSLGGIFRADFGLFYQVPMNSAFLYDITTVFDTYVYRAIGTVNIGMSAAAAFFQSIMGFILIFSSNFLIRKLDRNAALF

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Crispr_ID: NZ_CP042818_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_12

2479968-2480057

Orphan

Consensus_repeat	Method
TTTTGACACGGACGTCAAAAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_12

>merge|NZ_CP042818|12|2479968-2480057|CRISPRCasFinder
TTTTGACACGGACGTCAAAAACTCAGAACCGCCACGGATGGCGGTGGTTCCAAGCAGACGGTTTAGTTTTTGACACGGACGTCAAAAACT

>NZ_CP042818|12|12|2479968-2480057|CRISPRCasFinder
TTTTGACACGGACGTCAAAAACT	CAGAACCGCCACGGATGGCGGTGGTTCCAAGCAGACGGTTTAGT
TTTTGACACGGACGTCAAAAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_044634938.1\|2483078_2484794_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042818.1\|WP_148879040.1\|2474392_2477668_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042818.1\|WP_002698745.1\|2496455_2497094_-\|P13-family-porin	unknown	unknown	gnl\|CDD\|310316
NZ_CP042818.1\|WP_002695094.1\|2473460_2474171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199892
NZ_CP042818.1\|WP_002697897.1\|2470174_2470699_-\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|223877
NZ_CP042818.1\|WP_002698755.1\|2494918_2495389_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP042818.1\|WP_148878789.1\|2490341_2491616_+\|aminoacetone-oxidase-family-FAD-binding-enzyme	unknown	unknown	gnl\|CDD\|367519
NZ_CP042818.1\|WP_044634937.1\|2484793_2486524_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042818.1\|WP_002697896.1\|2470717_2470951_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224750
NZ_CP042818.1\|WP_024751815.1\|2470969_2471218_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP042818.1\|WP_148878585.1\|2482437_2483040_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP042818.1\|WP_082048242.1\|2473171_2473387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148878584.1\|2480110_2481616_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|180842
NZ_CP042818.1\|WP_148879041.1\|2477810_2478026_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751816.1\|2471829_2473239_+\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|376461
NZ_CP042818.1\|WP_024751818.1\|2478122_2479304_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP042818.1\|WP_024751814.1\|2469449_2470178_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP042818.1\|WP_024753296.1\|2494532_2494907_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP042818.1\|WP_148889664.1\|2492152_2493994_-\|flavocytochrome-c	unknown	unknown	gnl\|CDD\|273816
NZ_CP042818.1\|WP_044634368.1\|2495465_2496185_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_044634938.1\|2483078_2484794_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.58967e-134
NZ_CP042818.1\|WP_148879040.1\|2474392_2477668_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.83298e-09
NZ_CP042818.1\|WP_002698745.1\|2496455_2497094_-\|P13-family-porin	gnl\|CDD\|310316	pfam05628, Borrelia_P13, Borrelia membrane protein P13. This family consists of P13 proteins from Borrelia species. P13 is a 13kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism.	1.41209e-05
NZ_CP042818.1\|WP_002695094.1\|2473460_2474171_-\|hypothetical-protein	gnl\|CDD\|199892	cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins. E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase.	1.55288e-07
NZ_CP042818.1\|WP_002697897.1\|2470174_2470699_-\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|223877	COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis].	1.94221e-34
NZ_CP042818.1\|WP_002698755.1\|2494918_2495389_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	3.7586e-100
NZ_CP042818.1\|WP_148878789.1\|2490341_2491616_+\|aminoacetone-oxidase-family-FAD-binding-enzyme	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	1.38839e-141
NZ_CP042818.1\|WP_044634937.1\|2484793_2486524_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.22429e-130
NZ_CP042818.1\|WP_002697896.1\|2470717_2470951_-\|KH-domain-containing-protein	gnl\|CDD\|224750	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only].	4.10131e-24
NZ_CP042818.1\|WP_024751815.1\|2470969_2471218_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.77002e-36
NZ_CP042818.1\|WP_148878585.1\|2482437_2483040_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.44605e-12
NZ_CP042818.1\|WP_148878584.1\|2480110_2481616_-\|IMP-dehydrogenase	gnl\|CDD\|180842	PRK07107, PRK07107, IMP dehydrogenase.	0
NZ_CP042818.1\|WP_024751816.1\|2471829_2473239_+\|alpha-L-fucosidase	gnl\|CDD\|376461	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase.	4.11571e-84
NZ_CP042818.1\|WP_024751818.1\|2478122_2479304_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.41425e-24
NZ_CP042818.1\|WP_024751814.1\|2469449_2470178_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.32264e-142
NZ_CP042818.1\|WP_024753296.1\|2494532_2494907_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.65085e-87
NZ_CP042818.1\|WP_148889664.1\|2492152_2493994_-\|flavocytochrome-c	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	5.1452e-144

>NZ_CP042818.1|WP_024751818.1|2478122_2479304_+|IS630-family-transposase
MPKPPSKLELNPEELTYLESLVRLRTIQAQTLTRARILLLKSKGLSIKETADKVGYTYRSVALCLKKYKQGGVEHALTDAPGRGNNPEITDEEKSWIINLACQKPTTFGYAAETWTYALLTKHINTTAESAGYLRLATIHKTTVFKILTEADIKPYKIEYYCENRDPDFDRKMHNVLLVYKQLELYFEENKPLQTEEGKNIHVVSYDEKPGIQAIATTSDDLPADETHQCIRRDYEYKRLGTLSLLAGIDLQTGDAIPLVSDSHTSKDYVQFLKILDERYPQEDKIRIILDNLKVHTSKETIRYLSTVPGRFEFVFTPKHGSWLNMIEGFFSKLTRQLLRGMRVKSKTELVNRLYKYFDEINEEPVVFHWKYNLDDLDVSEAVITDALKYELN
>NZ_CP042818.1|WP_148879041.1|2477810_2478026_+|hypothetical-protein
MLFKSKTFILTALKILHSLCKQVQTPVVPRRSDVLKQDYLQSFKTRRHNFATDGKTQNGHGCPWFQAAAMF
>NZ_CP042818.1|WP_148879040.1|2474392_2477668_+|tetratricopeptide-repeat-protein
MPSLQELKEFRDELKHIGNEPEVTADWGDLYDELPPPSEAPVPDVNVDDLLDSIGIDTDALLAAEQSAQSRNEDKKPEKEKRNLEAELVDIDLDDIGKDPAPVNPPSETGDALPEMDLTSDFFDSSDSDWKTHEIPETDVSLDVLDAPEEKTEIKELPEEPLSIPQSNFSDAADFDDLLSSLDLDEPMQDQNTEKEESFSDVPESLLAGLQDDLNTAKTESEDASLPEFDLGDFDFNSPEIDDLDIDKIGEAEALDLQEIEDAPLESADHNAFDIPASAFDEIPSSTDEKDSDTFPEDFLDLSLPAESDDGFSDNAFNLEDSLTLQPESGLKDDFTPDISALNAPPEENVDIESFTAPPEIDVENFTAQDQNQTDEHTGFAVEDNALDTSIEDINEGAFELPESFQSFAQESKLHDFRPLSHDDEEIDENAALSNDDYLYFLHRLESFPLNVRLIIQDYLANVPDSDAAKMNLIRMIVDDTSLKKVAAHLETILEKSVNIPKGFERKTAEEYEREKRTFSYRLKHRILPIATMSFLALLFAFCISVLSWQFIYKPIHSEILYKTGYTALESANYQAAISKFDEAGTYWKKRRWYFSFARGFRDKKQYLNAEKIYLRLLYDFKQDKEGGIEYAEMLSKDLRNYEKAETVLRRQVLDYHINDSDALIALGNLFLDWGDEDSSKYQEAEKIYQSLISMYGTKDPYLSGLMRYYIRTDNLAKVLPIQEILTDKNSMLVSDLIELGGYLLEKRYEPKPSDSEKLRAKIEDLRKLLDKALQAAPAEPEAYYNLGRFYIYNYKPAKAKDFLSEAIRLYQKSAHLTAGKTIKKINAMRLLGELLCDDKEYLDAHDLYAQALTEYQEYTAIRALPPHRIIGLLYSNYADIDYFISGNFDSALENYRSAVKELNNTPSIQYRIGFLEYKRDNYPAAIQAMSLAYAEKPDDKNLLYGFGTVLFKRGNYFAAQGYYNHLMELLDIERLRKGIMFPYTNKEDAAFIDEYMRTSNNFGVVLNRLAETNGDSQKNARAMALFAESSRAWDALTRNPDTMIRSKSASLAYLNIQNMVNSLSAYEPEVYADIPMTLQYEKVLQQKEDR
>NZ_CP042818.1|WP_002695094.1|2473460_2474171_-|hypothetical-protein
MKSIKLVFFLSAIFCAAAGFCSEQIEPLVYNSLVDSIHKAKEPSIQGKYIIFTANGSSRYAGIAFAHENYKKIYSFKKLNLETTGKTSNDPVLFFIMPIPEGMRQIRYRMVIDGLWTADPYNANQIYDYAEKMSVSILDVPFQKEYKTNVENGLTQFVYQGEAGQRISLAGTFNAWDPFMYVLKEISPGYYELYLPLPPGTWLYAFFKDGNQLPDIANSDHVYTVDGRTASVLQVK
>NZ_CP042818.1|WP_082048242.1|2473171_2473387_-|hypothetical-protein
MAPLTLRLFLRYFRRAKRIRLRTFEKVLAAPPIPHAQALCCITGFVSLPFKNTASDNPRNLHRADQAQSCE
>NZ_CP042818.1|WP_024751816.1|2471829_2473239_+|alpha-L-fucosidase
MLFYKTGEDFWRKIMEEPIMEKGVHAYSEEDRYVVPKSAAVRKHLEFFTGLKFGLMMHWAPGCQIATYESWPLCDDADDWSREDVIWTDDMEEFKHHYWNANKTFNPIKFRPDHWADFAKRAGFKYLLFTTKHHDGFCMFDTQQTDYKITASDCPFSSNKRANIVQEVFNAFRAEGLAISAYFSKPDWHSEYFWAPEMGKAETRNANYDIPSHPELWNKFVDFTHQQLREICSLYGHIDVLWLDGGQISPRIHNQDIRLGEIVEEIRNTTQPHLIVCDRTVGGEYENIITPEQSIPSHYIGCPWEACITAGDYFSFHYEDNFKSPHAIVRLLIEVVSKGGNLALNIPPQPDGQLPAKAMRNLLRVGEWLHIHGQAIYNTRGYPIAQEQKIFITEGSENVFVFYCYDENTPRLPRRVNIKLKDERAVQKITCLRSGAAVSFIQNGKILVIHTIELDPLGANYADCLKLCF
>NZ_CP042818.1|WP_024751815.1|2470969_2471218_-|30S-ribosomal-protein-S16
MSVKIRLKKFGSKKRPFYRIVVQDSREPRDGKTIEELGIYHPIAAEDKQIAFDSEKVRSWLDKGAEPTDTVRRLLNKKQFTL
>NZ_CP042818.1|WP_002697896.1|2470717_2470951_-|KH-domain-containing-protein
MDKDLVEYIAKSLVDDPSAVQVTRTEEENLVVLQLRVAENDVGKVIGKNGRIVKALRTLLSASAGNARTRYSLEILD
>NZ_CP042818.1|WP_002697897.1|2470174_2470699_-|16S-rRNA-processing-protein-RimM
MDLLVTAKIFGTFGVEGFVKISSFSGEYEHLLNLAEIRLRLPKSKTGKETQELLYTIEEIELRYTDALLKLEGIDSVEAAKKLVGSELLVPRDMACPLYEGEFYITDLCNSILVYQETPVGTITSVAEGGGGYVLEISEAETGLVKYVPFIKQFIGKVDIAQKRVELMHRWILE
>NZ_CP042818.1|WP_024751814.1|2469449_2470178_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRFDVLTLFPQIPQAFFDSSIMAKAVQKGIISYTLVNIRDFAHDKHKTCDDIPYGGGAGMLMLAEPLALALDSVQAKEKRVLYLSPSGKKFSQKTAEQLSKEESLVLICGRYEGIDQRIIDEYVDDEVCIGDYVMSSGELAALVVIDTIYRLIDGVISGESLEEESFTDGLLEYPQYTRPRVFRNREVPAVLLSGHHANIRRWRLEKRIEKTLKNRPDLLQVLQESGTMSQEAQIILKELIK
>NZ_CP042818.1|WP_148878584.1|2480110_2481616_-|IMP-dehydrogenase
MAFYYTEPSHTFNEYLLIPRYSSKEHSPQNVSLRTPLVRMKNGEEPQFTLNIPLVSAIMQSVSNDKTAIALAKEGGLSFIFGSQAIEKQAEMVSAVKNYKAGFVESDSNILPRQTLQDILDLKIKTGHTTVAVTEDGSAHGKLLGVVTGRDYRPSRMDRSLLVSEFMTPISKLTVGKEGISLAEANDLIWEYKLNSLPIVNEKGELVAFVFRKDYESKKENPNELLDEKKRYIVGAGINTRDYKERVPALIEAGADILCIDSSDGFSEWQKETIQFVKKQYNGRVPVGAGNIVDKDGFDFLADAGADFIKVGIGGGSICITRETKGIGRGQATALIEVAKARNEYYERTGVYIPICSDGGIVYDHHITLALAMGADFCMLGRYFARFDESPTNKVLVNGTYMKEYWGEGSARARNWQRYDSGGDAKLAFEEGVDSYVPYAGPLHDNVQESMHKVKATMCNCGTLTIPELQKHAKLTLVSSASITEGGAHDVILKDIHANRT
>NZ_CP042818.1|WP_148878585.1|2482437_2483040_+|TetR-family-transcriptional-regulator
MCAKKRLPAEVRKKEIRDAAKKVFLQKGFSNTSMEDVIAEVGMSKGGVYRHYKSTAEMLHDLMTDGNHNRYNLIDDFLAKEKNISEPDVAIEVSLMKLLDKNDYKSLYAMFLMEAEKNPDLKKLKNKIFNEGKKEFLRVVTQRDLKELECFISDEWVAFTNAIIVATEILDVRKVFCNHKDFFKDIIRQYMEKSQNKNNF
>NZ_CP042818.1|WP_044634938.1|2483078_2484794_+|ABC-transporter-ATP-binding-protein
MNLIKRYVQKNKGKYIASIFFAVVGVIMDLAAYIILSKIIAALITGSTDAGFYGKNILYILLILVLKEIFAGTSTTISHTATFKSLKEIRKEIARKLFKMPLGDILNQSSGKLKNIIVDQVDHMETTLAHVIPEATANIVGPAILLIYMFILDWRLALLSLIPLIIGMLAIMSVMNESYKKNYKESVELGQNMNNAIVEYVGGVEVIKTFNQSETSYKKYSDAVYDNARFYYNWMKGCMMQVSIGRFISPMGLLTILPFGVFFYIRGTIALTALIQLIILSFGTVSGILKVMNFMDDLARVGTITGEIESILNARELSHSEESVSINNHTIEFTDVNFSYEKDKKVIDNLNLKINEGDVTAFVGPSGGGKSTIAKLIAGFWDTDAGEITIGGANLKEIPLSQLSDLISYVSQDNFLFDMSVLENIRIGNPNASDSEVKEIAKKSGCEKFILELENGYDTLVGEGGGHLSGGERQRISIARAMLKNAPIVILDEATSYIDPENESIMQEAIGNLVQNKTLIIIAHRLRTITDADKIFVIQGGHIESSGTHQELLEKSSLYSDMWNAAIKGDE
>NZ_CP042818.1|WP_044634937.1|2484793_2486524_+|ABC-transporter-ATP-binding-protein
MLTIFKKIWNFSKQEQSNIKFSLFFGFLNAVFNALQFAAIYYMLIKILQNEIAVIDIGIVSAIMLTSAVGKVLTQNKSQLQQTHAGYFMAAHKRISIGEKLKKVPMGFFSDFSLGKITTLATTSLSQIEIWVPLLLVLVLGGILNTVVFVLSLFFLNVTITAAAVVGIIGFFIVTSLMERKSRRNAHHVQEVQTALTKEVLSTVQGMQVIKSYNLDGENNKELDDSFERTHVLLLKLEKLMIPFTVIQRIVIGLTITCMLYLAVTMYISGTLTLAKTIMSMIASFIIFEGLLAAGSSMAVLRIAENAIDSLDYVNTIPDMEEGKDEKEISNSNIEFKNVSFSYDKKKILDDVSCVIKENTMTALVGPSGSGKTTFSQLIARFWDVNAGKITIGGKDIREYTLPNLMSNISYVFQNVYLFNDTIENNIKFGSPDASREEVIAAAKKACCHDFITALPNQYETIVGEGGAALSGGEKQRISIARAMLKNAPIIIFDEATANVDPENEDKLQTAIEALTKNKTVIMIAHRLKTVRNANQIIVLNDGKIEELGTHNQLMQKEGTYKKFIEARQSASSWKI
>NZ_CP042818.1|WP_148878789.1|2490341_2491616_+|aminoacetone-oxidase-family-FAD-binding-enzyme
MEDVNLNQRTRKNSLSRYIISMSKNKMKTIIVIGGGPAGMMAAYQASFNHNVILLESNAHCGRKLLLTGNGRCNVTNRREIENFLQHCSRSCRFLYSAFSQFDNYDLIKFFEDNNCPLIEEEDERMYPKTQKAQTVLDIFISLLKNRNVVIKYQTKAIDLIVDEKKIIGVKTDEQIINCDGLILATGGKSYPQTGSTGAGYQMLKKLEHSITDLYACEVPLVCQDAIIQTKELQGLSLQNVETSLIIDNKIRKSSRLNLLITHFGFSGPAALILSEAVSQHEVSKVTKTDCNLAVTHYKLDLDKSQSIAACLKQIQPKRWRDYLAAQIDFSLNLKLHQLSKEQKAVFNSLIFDHRFKLQGTLPIEKAFVTGGGLNTGELNPKTMKSKLIENLAVCGELLDCHGELGGYNLTIAMVTGYVAGKNF
>NZ_CP042818.1|WP_148889664.1|2492152_2493994_-|flavocytochrome-c
MEVYVKRLFISLAAVMVLLFASCGNKDTYTGTAKGNNADITVQVGYKDGVIQSVKVTKHAETAGVADAALEKIPEAIVAHQSLNVDIISGATETSKAIVNAVKSALQSANADLSKFDTAVVKEQREAQELTTDVVVIGAGGAGLTAAITAASEGKKVIVLEKKSIAGGNSTLATGGMNAAKTSYQDKNTFAEDKGVTTKIAAAEKDYPALKDLTATVKSQYEKYKKDPKGYFDSVELFELDTMVGGKATNNLELVKTLTKNSKESLEWLATIGADLKSVGSFGGASVKRIHKPVNAEGKTVAVGSYLVPILEAQAKKAGVQIIFDTPAYAIKLTDSGVTVEAEATTVHAKSVVIATGGFAGNSEMVEKYKPELKGFATTNTSGITGDGIKIADALNAALVDMEQIQIHPTVEYTSKALITEGLRGDGAILVNQDGKRFFDETSTRDKVSAAEIAQKGNYAYLIIDQRMADASAVIQGYIKKGFTKTGKTIEELAKEIEITPETLAATLQTWNKAVEAKTDSEFNRTSFAEKLDTAPFYAIKVSPGVHHTMGGIKINSNAQVIDKSGAVIPHVYAAGEVTGGVHGANRLGGNAVADIIVFGRIAGKQAAANAGN
>NZ_CP042818.1|WP_024753296.1|2494532_2494907_+|30S-ribosomal-protein-S12
MPTINQLIKKGRKAAVSRTKSPALQACPQKRGVCTRVMTFTPKKPNSALRKVARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTKDALGVADRKRGRSKYGAKKPKA
>NZ_CP042818.1|WP_002698755.1|2494918_2495389_+|30S-ribosomal-protein-S7
MGRKKKSINRPVAPDTRYNSVVLSKFISRMMLDGKKSTTTHILYACFDNIKEKTGEEPLEVFTKALENVKPLVEVKSRRVGGATYQVPIEIRESRREALGMRWLIAAARKRSGHGMPERLAAEIIDAYNNTGTAFKKKEDTHRMAEANKAFAHYRW
>NZ_CP042818.1|WP_044634368.1|2495465_2496185_-|hypothetical-protein
MRRLFFSFMVSVTILLVFSGCAPRAEIKVFPNGNASMKIKIIPGKTTEEVLVRFAQMSDTQENKDSIFDIPDIKENLVKQGFTVRALEKKSFAGLEADIGARWNQSLIKSVLNTKKGTIDFHLAPEDLKEIHALLPDESKEYADLLMAPVFTGEELSVDEYKAVVFSAYGEKIAKELTQSSFDFTIRCPGKVQTASIEPVGKVTYQKNADTVKAVVPLVDILTLKEKVNVHIEYKPSSN
>NZ_CP042818.1|WP_002698745.1|2496455_2497094_-|P13-family-porin
MEGSMGKLLIEKKLLFFCFMLITAEVLSAQSNFAKIQLLIDKGLHKNKAEIALLAADLTDQERVTLLNRNTLSLDIPMLLNGVIGFGSGSFVNKDYIAGGIHCGIDVACTITSITVGYLYSTRMMNSATSYDSDKMLKDTKIVLYTAITGFSVLAINKIAQLITLPVYTNKYNAALHDALLGQGVAAKKPVKIQLFPVFVPENIGLALAVDY

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Crispr_ID: NZ_CP042818_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_13

2600269-2600386

Orphan

Consensus_repeat	Method
AGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_13

>merge|NZ_CP042818|13|2600269-2600386|CRISPRCasFinder
AGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGTGGGGTGCTTTCTATGATTGTAGCGGGCTTACAAGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGT

>NZ_CP042818|13|13|2600269-2600386|CRISPRCasFinder
AGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGT	GGGGTGCTTTCTATGATTGTAGCGGGCTTACA
AGCATCGACCTTTCTGCATGCACAAAGCTTACCTCGATTGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148889685.1\|2590797_2592969_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042818.1\|WP_148879094.1\|2596022_2596676_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_052335779.1\|2602277_2604083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002698599.1\|2607131_2607623_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753234.1\|2605269_2605926_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889689.1\|2609408_2612399_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223957
NZ_CP042818.1\|WP_148889687.1\|2598631_2599501_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP042818.1\|WP_024753233.1\|2606319_2606502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889686.1\|2597173_2597494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP042818.1\|WP_002698596.1\|2607664_2608372_+\|response-regulator	unknown	unknown	gnl\|CDD\|381089
NZ_CP042818.1\|WP_044634390.1\|2593543_2593933_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379567
NZ_CP042818.1\|WP_024753235.1\|2604191_2605034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753231.1\|2608368_2609421_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224453
NZ_CP042818.1\|WP_024753245.1\|2587488_2588625_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NZ_CP042818.1\|WP_148889684.1\|2585142_2586627_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366146
NZ_CP042818.1\|WP_148884252.1\|2613008_2613755_+\|HAD-IIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319858
NZ_CP042818.1\|WP_044634388.1\|2589545_2589998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024753246.1\|2586623_2587445_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148879436.1\|2601567_2601873_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP042818.1\|WP_082048184.1\|2594701_2595565_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213216

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148889685.1\|2590797_2592969_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.82649e-52
NZ_CP042818.1\|WP_148889687.1\|2598631_2599501_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	8.41656e-08
NZ_CP042818.1\|WP_148889689.1\|2609408_2612399_+\|insulinase-family-protein	gnl\|CDD\|223957	COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only].	0
NZ_CP042818.1\|WP_148889686.1\|2597173_2597494_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	1.92448e-07
NZ_CP042818.1\|WP_148884252.1\|2613008_2613755_+\|HAD-IIA-family-hydrolase	gnl\|CDD\|319858	cd16422, HAD_Pase_UmpH-like, uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid dehalogenase-like superfamily. This uncharacterized subfamily belongs to the UmpH/NagD phosphatase family and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.16237e-99
NZ_CP042818.1\|WP_044634390.1\|2593543_2593933_+\|hypothetical-protein	gnl\|CDD\|379567	pfam14341, PilX_N, PilX N-terminal. This domain is found at the N-terminus of the PilX prepilin-like proteins which are involved in type 4 fimbrial biogenesis.	0.00759278
NZ_CP042818.1\|WP_024753231.1\|2608368_2609421_+\|hypothetical-protein	gnl\|CDD\|224453	COG1536, FliG, Flagellar motor switch protein [Cell motility and secretion].	2.70845e-61
NZ_CP042818.1\|WP_024753245.1\|2587488_2588625_-\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	8.62725e-06
NZ_CP042818.1\|WP_148889684.1\|2585142_2586627_-\|hypothetical-protein	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	7.07555e-08
NZ_CP042818.1\|WP_002698596.1\|2607664_2608372_+\|response-regulator	gnl\|CDD\|381089	cd17534, REC_DC-like, phosphoacceptor receiver (REC) domain of modulated diguanylate cyclase and similar domains. This groups includes a modulated diguanylate cyclase containing a PAS sensor domain from Desulfovibrio desulfuricans G20. Members of this group contain N-terminal REC domains and various output domains including the GGDEF, histidine kinase, and helix-turn-helix (HTH) DNA binding domains. Also included in this family is Mycobacterium tuberculosis PdtaR, a transcriptional antiterminator that contains a REC domain and an ANTAR RNA-binding output domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.71446e-36
NZ_CP042818.1\|WP_148879436.1\|2601567_2601873_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.26087e-08
NZ_CP042818.1\|WP_082048184.1\|2594701_2595565_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213216	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins. MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.	1.58014e-91

>NZ_CP042818.1|WP_148889687.1|2598631_2599501_+|hypothetical-protein
MKKLTPSPKRAYKDNVFTHLFGKGVQGKKHFLELYNALFNENLTDTKALENVRLGTPFYSTVINDLAYLVEGKLFVFIEHQSTISELIILRVLVYLILTIQKVLKAPNWFARKMKKFPKPVFFVFYNGKENFPLESKLQLSDFFIEGSDEFSIDLVVKVININYDKGHKILEKSPILKDYAFLVKMVNEKGFDKAIDECLELGVLKGYLEENIMEVKNMLKWEYDYDMDIAVQRAEAEAIGLEKGEAIGLEKGSYQKAIETAKNALKMGLSVDQISILTGLSTDEIEAL
>NZ_CP042818.1|WP_148889686.1|2597173_2597494_+|hypothetical-protein
MKKAFLKTSRIMLVLGLALLATLFGCMQTTEVQNQQKPIPEPEKFAVSFSVDVPEGVEKADFKLTAKVEGAHQNKLETAKAFKDMGLPLEQIAQGTGLSIEEIEAL
>NZ_CP042818.1|WP_148879094.1|2596022_2596676_+|hypothetical-protein
MKKLRFLGFAIVAIALIVSCPGTSGTPKASENTGGKVQPTPTPAPQPAPAPGESGNTSPDGNTPLGGTKDLSTEDVKTVVDKINQMFEGLGVKVTDSSSDTPVTKEITPNQLKERFKFTNNPKLADSFLTKFIKAALEALKFDDIPAVPDGAKAIEKLGLDLKLVDSTPGQPIKKDTTREQLKARFTVEGDATAFDYFVAYVKEYLNGNNSKNIPSL
>NZ_CP042818.1|WP_082048184.1|2594701_2595565_-|ATP-binding-cassette-domain-containing-protein
MYVGMNHGLAKMAVDKLEDLFTKMEAKKVSFGTEENFAHYNIEFKNVSFKYEKDFVLKDLSFTLDAGKTYAFVGSSGGGKSTIAKLISGFYSLDGGEILIGEKPLSHYSEKALTAKIGFVFQNAKLFNKMSLYENVHLAKPSASRAEVMDAFEKAQCNDILEKFPEKENTIIGTTGVHLSGGEIQRIAIARVMLKNPEIIILDEASAAADPENEYEIQKAFSNLMKGKTVIMIAHRLSSIVNVDEILVVEDGQIIERGSHAELMAGETKYRHFQDLYAKANDWRIKE
>NZ_CP042818.1|WP_044634390.1|2593543_2593933_+|hypothetical-protein
MKKFFGVALIVATVLMAVFTLVGCATTPKGPISNEYVGFYSGSIIHPITNMEVFTWTAEAKQNGEFIFTVNKATATGTIDSNGKFYVKPKGILQPKYKGTIDKNTKKVEGKMIGGFGVTAGKIQGKKIR
>NZ_CP042818.1|WP_148889685.1|2590797_2592969_+|HAMP-domain-containing-protein
MEKISIIPPPPPPPRKSEVTMMRRKKKISSIRVRIFLFIGALILLSIMFLATIVDRTTKRMITDDLKRSLTDATANAAKLFDSHMREWWEYASGLALSDTLQDPDISYLKKAQRLEGFTKAQGENIKHWIVDAQGRLYLANGDVVDVSKQDWFIESKGGRNTYFSTPFISKVNNELISVICVPVFDINGNFFGAFQLEIDGRFLSMDSLPDFNLEGKTSEIFILDKNGTHIANNDLTFVTKRVNRIEEAKSDPSLKSLATAMSKAISEESGLINFKYNGIDRVGGFAKMKQTGWTVVITQDVKELQAPLYSLRIKLLFIDIAVLIAAFCVIFFIAQSITKPLNRTVDALKNIAEGEGDLTVRLPVQGNDELTQMAAYFNKTMEKIRAMTKKVGVNAVAMHELGTNLSSNMTETASAVNQISSNIEGVKQQVINQSASVTETSATMEEIIRTIEQLNASIESQATSVTQSSASIEEMVANIASITESLNENNQAMGDLAEQIMAGRNGAVDANNFVKQMSERSDALGEAANVIQNIASQTNLLAMNAAIEAAHAGDSGKGFAVVADEIRKLAEESNNQGKQIGAMIKETIAIIVEMTKAGKATEEIFNRVYQVSSKIAEREEVVAAAMQEQDRGNKEVLQTIKTISEVTSEVKGGSTEMLSGGRTIAKEMQKLDELTRMITDSMNEMASGVVQINNAVQEVQEMAHQNKNAIDSLNNEVGKFKV
>NZ_CP042818.1|WP_044634388.1|2589545_2589998_+|hypothetical-protein
MKKNLALLFGALICFSIFSCAGGIVNVPFVISVYIEKEDGTRFTENEVSLLKLNSNGRIYTDKCDENGMPIYKDGGFRIQYELGYARSMRKIKEIENSWKKKMNEFWFMIDGTSIGYEVFTMKPLGENYVISSEPKESKITYIIKLKKKL
>NZ_CP042818.1|WP_024753245.1|2587488_2588625_-|hypothetical-protein
MDEKELKDLRRGNLPQITEHKQKTDLMGDKIMNYWLHRIAHLEPVSYPLLENGLLSIGFSDFCNETFLNKVSNADEDFFDNAFQKNWGHKSRNRKNLWRFIAEMDKGDWVIVPSWKSFSVYEITESCALLASDKTLTLPKADWNGTSIEYDSKTGLLKLQGEAEYLDLGFVRKVKPICLDIPRAEYADSKLTARMKIQRTNADISDLKESIEDAIKNFKAKKPINLKSELMNKSIKSWKALIKKCLQPEKFEKLVQKYFEAARANSVIIPPKNPSGKEGSEDVDVIAYFENIKTAINVQVKFHDGETSDWAIQQITEFAKIKGNNSDGYVNQYWVISMADSFSEESYKMAIEHNCVLINGDDFVEMLLNVGIQNLDDI
>NZ_CP042818.1|WP_024753246.1|2586623_2587445_-|hypothetical-protein
MYKLKKICSVAFEIPLVFVAIACLSFPLIVIAMPLPIRAIEILIACSFLWAKALSLEAVWNYKNKTISSCLFWYCFFSFAVEFASLRMILMFGTAENKIPFLRYFANHQLNYIVGSSVSLLLLFFVLLLIRIKFCRMEMSIARILFTAIPQPCDEQCIQEQFRTNKITEEEKDRTIKNTRIEHKFIDESQCLIKVFKINVMAPLCIFVLTLAGGIAIGHYQYHLSFKAAIQQYAMPVTLTTCMVFVPIMMLYSGMVYKRENYVPKTAFKDQAV
>NZ_CP042818.1|WP_148889684.1|2585142_2586627_-|hypothetical-protein
MIDRSKLTRQKGIKGFLWWYLESENNSKTIFTDIIIFLAVLLSVSLTIFELVHQNKDLPLWIFQLDYALSIFFIIEYAMRFYISTDFIYDTKTKGFASAVKHKAAWIFSLSALLDLIALFPLIRFLRVLRAFQFLRFIKLLRLVRIVKLRSLFIHISLFVRSLRESSFSFLILFIATLLVVVLNSIGLFLAESKAGGTTSFFPSFVYMLKLIGFTDDRPTTILGKVFASLTLFANIAFIGFFISIISSKMGEIMDNVKKGKTGNLNIKDHIVLCGYTSSSKKVIEELVNNKKYCSKKIVLITEKENPDIGGIIYVNGDYSDIEMLRKVNIKDATLAVVFSESKKNETIKNVDMRTVLTVYNIEQENSAVHTIAEIINEKNAEIIQEKIKGDEIVFKDTIDAHLIVNCIRHPFISSMLYNFLNLDGRILNEEKLSYFGFNEPTTFKSLKQHQVESDIVIIGYIDSRNNAYLAPQSDVRIEPSDRIIYIDEAQKKQ
>NZ_CP042818.1|WP_148879436.1|2601567_2601873_-|ABC-transporter-ATP-binding-protein
MMFAVMFFVDWRLGILLVILTIISIACMFGMYGDMTFMEKYAKALEKMNSEAVEYVRGMQVIKIFNASVASYKSFYNAISDYKDCVFKYTMSCRVPYNLFF
>NZ_CP042818.1|WP_052335779.1|2602277_2604083_+|hypothetical-protein
MQLPIECKNATHLELHITKATPNKRIWVVSFFAGFEYALDESQIVKIKYQQKKSENKEGSIGRLYFNTIDLTLSNIDRIFDKENPKSKIVNYLTTTATFSVVLSMQQDKMQNRFVLDLGVFSVTDFSSKLSEAKATIKGTDFIGSQKDKEISLGIIENKSAYEVFKTVALKLGLEPLGIDPTLKNITYSLLPLNGTVAKVLNQLCSNTNVFCTTRGNIFVATLLKNKHATLRYPQRYFALNEFKETNATKTQSLIPNVINLSYSTYEYENGIFIKDKKVLFYNKDIIQQPKNWETMPLTEYINDVFIPEKNKPVSYQKTFYAGELPKNFHHIEISDDFLYRSFEYKVETKKNDKGALESVTVKLWNYEKRDDTDQCTIFICVKEKPASTIIDSQDFPVYSHADEYIRGAELEFQPENQNDAAEIERRNIPNKPEIFSVETTGDIQVDRIEVGNYFVRGFFEFYMTRTEKGVTVKAWNYSAVPQTLTVNVYGVRLKKSEQKITIQARNEENIKINGEIVKNISVDGVSDKKSAEEILKTAMKYYKELNGALSDETWSDPRIQLYDFLGFKKLRYPNYSQGIVDEIGLEYAGYLTQKITLRET
>NZ_CP042818.1|WP_024753235.1|2604191_2605034_+|hypothetical-protein
MSYTRLMNKDETGRAPENKVTGEVVNVIQGVPQKLAHSIFFEEDFFIYADAEKRQKLRRGIDFDFENEDTIATEITNKNCWTRITVYKSISQVYIDYKVCGDFVTAEIINEIYDAADAISNDVNALNDKLEANKKELANHKVDTEPHGASKYVNPNSLALRTSAGTLQAANATEGNDLVNLNVLNEKQREQDNATQNKITESARTIYHVLQANEAVLTKDDFSEGLDPNASDYEEQLATRLETHVNDLKPHHNAIRNKDGNLTTGEATLETEAVNKKTAG
>NZ_CP042818.1|WP_024753234.1|2605269_2605926_+|hypothetical-protein
MEQAGGFQNSISPDATPQSIALRTDTGTLKAANATENDDLVNLHTLKKEIDSKVSVIPSAENLFILFFQNTPYVQFPGKPEPGTLFSFDGYHWEKANYGGAFFRAEGGNANGFNGGVQAGGIPDAQGWLGFHGNRGGFAGVKGREGNAGNSGVFQERKRVEDPDNGIVTPVNETLINNYKELYLIEATEFRLSYGGMPIANEVRPVNYTVRLWYLIKD
>NZ_CP042818.1|WP_024753233.1|2606319_2606502_+|hypothetical-protein
MTTEEVAKKAGCKQITARKWALANGVKFIGSSNRKMYIWTDADLARFKARKKPGRPKEST
>NZ_CP042818.1|WP_002698599.1|2607131_2607623_+|hypothetical-protein
MLVEDHIISELIMSISKHYADTVATRFLRPLFAAILSDIDIARHISDLTEHADDFIIQGFHLDELYEDIIALSRFIFLVRRDILPHLRTLAEENIRMDSIDRVYRNMAFHALPTNITILAELLYSLYERAIAYDKKQSRKKGKKPIAHRFSELENVKKLIEKY
>NZ_CP042818.1|WP_002698596.1|2607664_2608372_+|response-regulator
MTKTITNQIHILIAESDTIIALDLQSMLQRLGYTVAASVETAEDAISFAKQLNPDLILLDIGIQGKINGIEAAIKIQDSVKTPMIFLLSAADTPLLTKADDINYDGYLLKPIHPDSLAGTIDTAMYKYRSMQRIAQAQEEIKRYRKNYASLETLAKVDRVLFWQKEENCEVQFSSNEAGSRYRAIIEAAIQQYETDFAVFHRFDTIETVLITGTKTATEASGVIIRIDEDKEVHQ
>NZ_CP042818.1|WP_024753231.1|2608368_2609421_+|hypothetical-protein
MTDIESEMLKRGLIKVPSADQKTESSYRKVAKFLYLIGVEQAAQVLKQLKPEQIDKVVTELVTIRHIDKDEATYILSEFSALYESSKNSLGGIQTAESMLTKAFGAEKASEILKAAVPEKQTKPFEFLDSADVEKIAQLLDKELPATKTLVISQLRPKLAAEYIKTLPAEEKKDIILRLAKLKTILPEVFRQVSNSMQEKYQRLQTGKTDLIDGRAVLAEILRKIDPATEHDILQNLSDSNPELEQNIRERLFTLEDILGINNSYLQKKLSTLTDDTVAKLITGKHEAFIEKILSNVSKNRAYYIQDEKKTNPSTLKEVNEVTNQFLTELRRAWERGEFIIEGRDEEWVP
>NZ_CP042818.1|WP_148889689.1|2609408_2612399_+|insulinase-family-protein
MGALIHGFEIIWKHDLPEMQAVGVYAKHKKTGLELYHILNDDEENLFAYSFMTASANSTGVAHILEHSVLCGSKNYPLKDPFVLLSRQSVKTFLNALTFPDKTVYPASSVVEADYFNLLQVYGDAVFFPLIEEWTFKQEGWRFEFDANNKLCLQGVVLNEMRGNYADFDSLMYDYARASVTQNSIYMYDSGGEPSTIPSLSYEQFRGFHKKYYHPCNCKLFLYGNIPTEKQMQVLHERFLSCFEPAEPPESIPLIPHMGEPVFLSRYAPASEGMDMDRCGLVETWLLPESDTAENLMDAFLLEEVLLGHDGSPLSKALLHSDFGTDLYVYNGCQADLKNILFFIGITGAEKGREREFKNFLHKTLQGFIEKGIDKKDIDSALNSIEFANREIRRGSGPFSLTLMQRSLRGWIHGKGPESSLRYIPAFEKLKAAIKTNPQYVERLIDKFLLQNKHSAMLSVFPDEDFSATLDAKLQKIAEAYEKTLTKEMRIKLQKEQEILLERQKEVDSEEKLALIPHLKKSDLPVPRPAIEETMQFFGEVPAIIHELPTNDIAYLQLAIPVDNFSMEEALYLPLYANALTGIDTHTLSWHEVSSELAYLTGNFSVSCVNAGDLNVQELPLLQNQTKLLREEVVGRSWLLIRAKMLPELIKPAVDFIFQYLKTAAFSDRKRLKDLLVQQKNDMDSAPAHSGHLLMLFKTTSLLSPVKAIDELFSGAAQIRFLRKLHASCAEQDFPESEAEKLKSIHAKILNSGMLVLLCGTAENLKVFAEALPPHLSGLKKPAPGKNLHVEVKTNFFAKQQLTLFPSALQVGFTAVSFPHFSLSDKQGVEAVFASWLSAGPLWERIRIIGGAYGAFTAPEPIESIFSCATYRAPDPLHSVSQIIESIESCATEKFDAPTMERLITGAYSTTVTPQSPTQKSQTAFVRFLNGMSEAVRLRNIQNLLNTQGSDMNRCAELLLAQKSCIEGAALGSDTQLRHTEEAARFFAKMQCEQPI
>NZ_CP042818.1|WP_148884252.1|2613008_2613755_+|HAD-IIA-family-hydrolase
MDGTFYLSDTIIPGSLHFIEQAKKTGRDFIFFTNNSSKNPENYIDKLAKMDCKIGREQIMTSGDVTIEYLQTNYPEKKVYLVGTEPLVQSFAIAGIALVEENPDIVVLGFDQTLTYEKIKNICNFIRAGAMYFATHPDINCPVEGGYIPDVGSFMAMIELSTGSKPNKILGKPYKTTVDMIVHRTGWKKEAIAFVGDRLYTDVATGVNNGAHGLLVLSGESDMHTVQESNVKPDAIFLDLKEIAAYLR

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Crispr_ID: NZ_CP042818_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_14

2647814-2647899

Orphan

Consensus_repeat	Method
TAAGCGGCTTAACAAGTTTGAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP042818_14

>merge|NZ_CP042818|14|2647814-2647899|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAAGAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACGTAAGCGGCTTAACAAGTTTGCAA

>NZ_CP042818|14|14|2647814-2647899|CRISPRCasFinder
TAAGCGGCTTAACAAGTTTGAAA	GAGCTGTACTGCAACAACAATCAGCTAACCACATTGAACG
TAAGCGGCTTAACAAGTTTGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_148879526.1\|2645276_2646293_+\|endonuclease	unknown	unknown	gnl\|CDD\|227668
NZ_CP042818.1\|WP_148879533.1\|2654248_2654608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_044634970.1\|2644705_2645092_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148878755.1\|2656037_2657633_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226810
NZ_CP042818.1\|WP_148889694.1\|2651924_2652968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752213.1\|2642092_2643331_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP042818.1\|WP_044634438.1\|2640575_2641328_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP042818.1\|WP_044634232.1\|2654943_2655135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752208.1\|2633236_2635042_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP042818.1\|WP_148879628.1\|2635419_2636673_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379256
NZ_CP042818.1\|WP_024751666.1\|2653830_2654229_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|273179
NZ_CP042818.1\|WP_148878748.1\|2649147_2650104_+\|recombination-and-repair-protein-RecT	unknown	unknown	gnl\|CDD\|236628
NZ_CP042818.1\|WP_024751636.1\|2652981_2653761_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_CP042818.1\|WP_002696692.1\|2650119_2650923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889692.1\|2646308_2647589_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|213207
NZ_CP042818.1\|WP_024751742.1\|2648526_2649099_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP042818.1\|WP_024752211.1\|2639535_2640579_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP042818.1\|WP_148884482.1\|2655131_2655929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002698061.1\|2638534_2639539_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP042818.1\|WP_044634969.1\|2644189_2644573_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148879526.1\|2645276_2646293_+\|endonuclease	gnl\|CDD\|227668	COG5377, COG5377, Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair].	1.59871e-30
NZ_CP042818.1\|WP_148878755.1\|2656037_2657633_+\|hypothetical-protein	gnl\|CDD\|226810	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only].	5.31031e-32
NZ_CP042818.1\|WP_024752213.1\|2642092_2643331_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	4.04346e-35
NZ_CP042818.1\|WP_044634438.1\|2640575_2641328_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	1.39374e-129
NZ_CP042818.1\|WP_024752208.1\|2633236_2635042_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP042818.1\|WP_148879628.1\|2635419_2636673_+\|ISNCY-family-transposase	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.71116e-09
NZ_CP042818.1\|WP_024751666.1\|2653830_2654229_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|273179	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb). All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair].	1.84771e-35
NZ_CP042818.1\|WP_148878748.1\|2649147_2650104_+\|recombination-and-repair-protein-RecT	gnl\|CDD\|236628	PRK09846, recT, recombination protein RecT.	5.294e-75
NZ_CP042818.1\|WP_024751636.1\|2652981_2653761_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	1.48504e-17
NZ_CP042818.1\|WP_148889692.1\|2646308_2647589_+\|AAA-family-ATPase	gnl\|CDD\|213207	cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.	4.39719e-06
NZ_CP042818.1\|WP_024751742.1\|2648526_2649099_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	9.06068e-23
NZ_CP042818.1\|WP_024752211.1\|2639535_2640579_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.68345e-98
NZ_CP042818.1\|WP_002698061.1\|2638534_2639539_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	5.71106e-121

>NZ_CP042818.1|WP_148889692.1|2646308_2647589_+|AAA-family-ATPase
MLLKNIEIRNVRKIKQAEIEFHGAGVQVIQGLNKSGKTTIAQSIALTLGGSKDFVPGMISAGEEQAEIIAYTDDELKIRTLIGEKVTQDVSQLDELTGRYAKVSGGVRAFLDSIRSGLEMPFAIKDWTDESIIELLKERTGTSEKIALIDEELKRLEEARTQTGRDKKRLGTPTPVPKVEHAKPIDELQAEKEKAQNFLSTLKNAFSNINQEMHTLNIESESDIDAAIQRLELAKENLHKWLSKNHKQYSKEDIAEIDAAILEWNKNETAANAYDAYIAACDEIKKLEDEYNGLTKKIEAKRQERKDTLASMDLGVSGLEINEDNQLVHNGAIRGITKTNTIGNWSTAQSIQVFFSLGVRFSGEMKVMVVDNAESLDEAHTAIISEWAEKSGFLVIMLKVGDVPEELEEGIIYLKNGEVVANEYRI
>NZ_CP042818.1|WP_148879526.1|2645276_2646293_+|endonuclease
MENLVKQLLGKDTNYVFTKSMAKDEWRNARRSSIGGSDAGAIMGLNKWASPLTVYLDKKGLHSFEGNMFTERGSWLEDPIRQRCREEFGVLIEEVPYMFYSGEQKFMSANIDGLIYVQEPKTISGIEVSGLGGHEIKTSQRGDGFGENEIPDSYFAQVQHYMSVLNLDWFVLSAYIIDKNELRHYAINRDEAFITRLVKAEKTFWEDFIEENIMPAPSGVDAEDEAIAKMFEGAENTLILDGEAESMSAEYLLINAQIKELEEKKSKLSSSLKLKIIEQQTNSEEKKAKAVAGKYNLSFSKSIRRTVDSEKLKKDGLYEQYLKESEVAMLRITEPKAK
>NZ_CP042818.1|WP_044634970.1|2644705_2645092_+|hypothetical-protein
MSEPITKVSETISFEDDCTFGNVETKLSNGWTVTQKFSWSFDSYYEPEIDYQCEDVGDLSIFDKNMEPYSNELTSEEEKALARLCIKDADELTDAVYQQTDWKSLAEEVREYNKNPYSYYGVTPLDFI
>NZ_CP042818.1|WP_044634969.1|2644189_2644573_+|hypothetical-protein
MNIEEIKKLSLNRRKTIAKSEKTPQNILLSLAASDPHRYVRGAVAENINVTADILEILLEDDDLYVRNKARERLGLFKLRLSEEREKTIEEKAEDIEDECDCLADFEARKKEQERWAKGAEICIPFK
>NZ_CP042818.1|WP_024752213.1|2642092_2643331_+|OmpA-family-protein
MRICFKKILAVLLLVLNTAVMQAEIFRFKFKDGESYRINSLVIEDVFVNNFFSHTAEITNRITVDISDVKPESAENRLSALHTCTFMTSERNLHKTFRWGRNYESVFRRDDLGVYTIEPKYFMPVVRNVPVFPEKDLKPGDTWEFEGEEAHDLRDGFDIQTPFRVPFTVAYTYKGEIEKGGKKYHHIIAEYNLLYNVPPQLIAKNQHKLPTLYPVRTIGYSKQDLYWDNEAGNLPKYTETFKIQLMLNSGRTLTYEGTASAEITETKKLDKAAVAEDLTQKIEELGIENTTISQTDEGITISIENIQFEADSARLLSSEKEKLQKIGRLLQDFPDKELLISGHTALRGTAAERQKLSEERADSVARYLEEIGIRDTQHLYTRGFGARRPLAPNTNEENRARNRRVEITILEK
>NZ_CP042818.1|WP_044634438.1|2640575_2641328_+|ATP-binding-cassette-domain-containing-protein
MIEVKNAKKKYSKEVQIGPLTINIPEAGITSLVGPNGAGKSTMLLMIGRLLGLDEGQILVAGLDTVSANSEALAKVLAVLRQENLFVTRLTVRQLVGFGRFPYTKGRLNKVDEKIISKYIDFLGLTDLENRYLDELSGGQRQRAYVAMVLCQDTDYLLLDEPLNNLDVSRSVQMLTHLRHAADEFGKTIVMVLHDINFAARYSDRICCMKEGRIVEFGTPAEVMQGEKLSKIFETKIEIIQGPYGPIAIY
>NZ_CP042818.1|WP_024752211.1|2639535_2640579_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTNNNLTQTCLHNGKRSAKAFRSAKEQRHYFYILFAFFALGLLASYGLLVYKNPVPVSSPSFLPVVKRRMIAVTAMIIAATCHGLSTVAFQSVTNNRIITPSLLGFEALYSAIHTSTIFFFGITGLMQFTGIYAFIIQIVIMVGVCLLLYGFLLSGKYGDLQLMLLVGVILGTGLRSISAFMRRLLAPSEFDILQARLFGSVNNADPVYFPVAIPLVLVTSILLLFYSKKLNALSLGRDVCTNLGIPHKRCVIYTLILVSILMSVSTALVGPITFLGFLVAALTYQIAPTYDHRYVFPMVLAVSYTVLTGAYFLMYHVFSAQGVVSLIIELFGGLAFLIVILRKGKL
>NZ_CP042818.1|WP_002698061.1|2638534_2639539_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTTQPTVEAEKPQRFDRKLWTPAFFIAVVVIIALGVASLFTGVYDIHGQKDGWQMFFITRVPRTISLMLTGAAMAMSGIVMQLLTQNKFVEPTTTGTIEWAGLGLIFVYVTIPGPTLMQRMTGAIIFSFVGTMIFFLFLRKVRLRSSLIVPIIGIMLGAVVSALSTFIGLVFSMTQSLEVWFAGSFASVQRGRYEYLWIIIAITVVVFIFADRLTVAGLGEDIATNLGLNYNRIILFGTVLISLAVGIVAAVIGHLPFLGLVVPNIVSMFRGDDLRSNLPWVCVLGMGTITLCDIIARTIIMPFEVPVSLILGTIGAAVFIGLLLKQRRRKIKR
>NZ_CP042818.1|WP_148879628.1|2635419_2636673_+|ISNCY-family-transposase
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGLAAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGIYSPKKRRTRKKVHKTRERRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTKEQVTQFGKIIKYLGIDMFPAHSSQAKGRVERLWQTLQSRLPVEFARRGITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNHLFKIEQNKFGAGTMVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042818.1|WP_024752208.1|2633236_2635042_+|elongation-factor-4
MFNPDNIRNFCIVAHIDHGKSTLADRLIEKTKAVSERAQRAQMTDDMDIERERGITIKSHAVRIPYTAQDGKAYILNFVDTPGHVDFTYEVSRAIASCEGAILIVDASQGVESQTLSNMYLALEHNLEILPVINKIDLPAANIPEVLHQIDHDLGLDSEQAVPVSAKTGQNIDALFEAIVTHFPPPTGSDNNPLQALIFDCNYDPYRGVIIHVRVFEGVLKPGMTIRFMNNKAEYKIEETGVFVFALVATECLHAGEVGYIIAGIKTVSDVGVGDTITDANAPCAEPLAGFKEIKPVVFSSVYPVDTNDYEELRESFEKLKLNDASLSWEKDSSLALGHGFRCGFLGLLHLEIVQERLEREFDQSVIFTAPSVRYQIHLRSGETIICDNPADYPDETKIASADEPYIKAMVITPTEYLGNIMSLCMEKRGVQAGMNYLDEKRVEMIYEMPLAEVLFDFYDRLKSVSRGYASFDYELIEMRPTDLVKIDILINGKSVDALAQLAYRPNAYKKASHVCAQLKEEITRQQFKIAIQGAIGNQIISRETVNALRKDVLAKCYGGDITRKRKLLEKQKEGKKRMKMIGDVELPQSAFLSVLKTNTD
>NZ_CP042818.1|WP_024751742.1|2648526_2649099_+|3'-5'-exonuclease
MNTIWCDTETTGLEPENSGAFEIAFIFAGKGKVTCERLFKLNPLNETILYHEEAAKTHGVSEEEIRSFPPAEEIVPNIANFFQQAIHVFGDGEKLTFAGYNCNFDYRHLEALFNRCGLTLADYFSKQFDALKFVKKATRQKAIPRLENLKLGTVCKSLGVNLENAHTALADIQATQALCIELFKRGVKVE
>NZ_CP042818.1|WP_148878748.1|2649147_2650104_+|recombination-and-repair-protein-RecT
MNVNNTNKNQVTAKTKGGDLRSMIMANMDMFKMALPKAITPERMTRIAMTAVTRNPKLALCNQNSFFGALLTAAQLGLEVNTPLGQAYLLPYDSKNGLQCQFQLGYQGMLELAYRSGQFKRIKAVVVHEGDEFTYSYGLNAILEHTPSGNGNPTHVYALYELTNGGVDFEVWTWEKVMQHGMTFSKSFENGPWQTAPEEMAKKTVLKALLKYAPKAVELAEAANLDEGIIDKKLVRNDGIAEIVTNIEYTEPVQQQTAVQYAEQDPVNANGKTRSSERQKSGAAAQMSKEQQMEDEQAIEKFELQQNAIFDIAPEFPM
>NZ_CP042818.1|WP_002696692.1|2650119_2650923_+|hypothetical-protein
MKVTGQYLARKVYSNNVHFVMLKIDDKKQADLLDTLFKRKAERDARAGHESLLNVSFNLQYREKSYKQLRTVFALVTAIFISMDGRLPTEEEKYALYLDLLDVYALKTPSKIKPDTLRTIHLSESNTFEAAHFINGLMLHLATECDLDLDLQSDVKNLLWEWELHRGGEEKDPLDYYDTECTQLISEADWRELHQYSEASGLHEAIHLHHIVTRGANAAAIDKAWNWCALTSDEHEQLHHYGEKAFLKKYPHLEGKFKRAHRMAGKL
>NZ_CP042818.1|WP_148889694.1|2651924_2652968_+|hypothetical-protein
MKSNFKSCIFSETTKKQIDAMTDINMKLRFYEAVTNYGIYGIDPDFEGIDLLIWIPMKDIIDNATNKRGAPVGNANAKKANNKTSDSDTEQEKQIKYNETKKLPKNIESNSEQKKQMDLIENKENNSKQEKQIKQLNSIKTNKTIRPNDNDNVNVNVNDNVNDNVNHPPPEDTAGQDIYTCSDKQEDEEVFSDFSENENLTQLAKDIYGVFVEAGINKPNTFLLFLQRDFQLGLDKLREQAIPVTPDILAACKNYAKVLALKKQQATWWNFTGGFDGFCGKNIILKFLPERFTLTQFEKNNRSPQAEKDYSKQDFSQSSIDEFFGKPQPPPQVVSADVGDELEGVMF
>NZ_CP042818.1|WP_024751636.1|2652981_2653761_+|ATP-binding-protein
MRVLKQGKWQQVNITQSFLPDYLRQSKALCKTHGEYKCLIDTRTNEASPCPLCEQDRERAELETQKELEQFEARLKKIDGLPKRYRNAGFKNFVVDEKNKTARDSVLSFAKNPNNKWLLLLGKNGTGKTHLAHAVLKLTGGIFRDFDDVSTDLLDAQAGYGAGLNKTLDKYANAPMLVIDEIDKVKNTEGRITWLNTILRRRYNEMLPVVLVGNIDLERLCQIIDLHGGEAMRDRIKELGIVVNFNFESYRPVLRNEKE
>NZ_CP042818.1|WP_024751666.1|2653830_2654229_+|single-stranded-DNA-binding-protein
MTDLNKVMLVGRLVRDIELRYTASGTAVGNISLAVNQSRKVGNEWQNEVSFFDCRLWGKTAESLQQYLTKGKQIAIEGSLKQERWEKDGKTQSRVIIDVQFVQLLGGNERASGNSGGVLGNYNAADEEAIPF
>NZ_CP042818.1|WP_148879533.1|2654248_2654608_+|hypothetical-protein
MKMDLTKKINDLIKAKDEHGLDALINKHGGHIFKAECLTAVDLVGIKGECFYSDSFEEALKKTKDYLRPLQQKEASLLISLELITKIFGGGLEYCCYLHFIRLQLFLICLYYKKYYLNS
>NZ_CP042818.1|WP_044634232.1|2654943_2655135_+|hypothetical-protein
MIVCPSCKKPVKYIASKDNTILIVNAELKTLVNERGRFIQGYELHECPSEVAAKTIPTAEAQA
>NZ_CP042818.1|WP_148884482.1|2655131_2655929_+|hypothetical-protein
MKKEKETPPEKKPKEKLKKTTAAKTSAAKKSVKKEASLSKNDVLISMETFDVGDAKITEKEKRFVFWYTYPGSDAFMVQARAAELAGYKSPTSEGYRLRKKDTVAKAIRYVLDTNIKKDLDEEYYKILELKKRRIHYDLADYVKKEQKTIITKEGIEKIIEIEELKDLQDLTPQQRQVIDGLDLKGGNNTWVYIFADRDKAMADIIRIREKLFEREQGDEGDNIEFVAEIIKEGLALKVSARNKKRAISESADFLELSNEGSEEF
>NZ_CP042818.1|WP_148878755.1|2656037_2657633_+|hypothetical-protein
MGALFTPDERLNYTDAFIKVDEKPIDLDFWQERFLMDAQRHSIVLKSRRTGFSFITALKGLVKAMDGNRTKYVRQFVSYNEEDAKEKIQYAQEFYASIHPKAKKKLRSCTKTAMEFYDKSGKTVSRLISIACRPPRGRGGDIVFDEMAIYPENKAEVIYTAGIPVTARGGCVEIGSTPLGKIGRFYDVFIDKKKYRTYNRYTIPWWFSAALCTNVEEAVRNAPAMDTEERVYRYGTPPVIEAFEAMLLEDFQQEFECTFIDSALSFITLDLIYANTPGMRAEDRTEEIRGGNIEDADIEDEKDLEIKIFRTSDELCAGYSREEHGALYLGYDVARYRDAAVIYVLGVVDGKKKCVAEIEMKNKKFEYQRDEIRKIMRQLPVVRGCIDRTGQGLDTTETLQKEFGESKLEGIDFTTPAKEVLAMGVRTGLEKREFLLPNDQKFRKQIHSIKRIPSAGGSFRYDSTRDKDGHADSFWAFALANHAIIGNTAQATTGFYQQVKQRNEAGKKETKKSSSRRTRGKTLAQIDKKIK

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Crispr_ID: NZ_CP042818_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_15

2698788-2698939

Orphan

Consensus_repeat	Method
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP042818_15

>merge|NZ_CP042818|15|2698788-2698939|CRISPRCasFinder
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTTAAAAGCTTCAATTTTATAAAACAGTGTTGATGCTTTTAAACATCGTTTAGAATTGAGCACGGGCGAGCCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT

>NZ_CP042818|15|15|2698788-2698939|CRISPRCasFinder
GCACGGGCGAACCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT	AAAAGCTTCAATTTTATAAAACAGTGTTGATGCTTTTAAACATCGTTTAGAATTGA
GCACGGGCGAGCCCTTAGAATTTTTACCTATGGTTCGCCAACGAGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024753214.1\|2710297_2712058_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238518
NZ_CP042818.1\|WP_148879155.1\|2712057_2713464_+\|DUF814-domain-containing-protein	unknown	unknown	gnl\|CDD\|224212
NZ_CP042818.1\|WP_148879153.1\|2705227_2706049_-\|ferredoxin	unknown	unknown	gnl\|CDD\|224069
NZ_CP042818.1\|WP_148889697.1\|2690046_2690868_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889700.1\|2696595_2697537_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376217
NZ_CP042818.1\|WP_148879633.1\|2702938_2703316_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234601
NZ_CP042818.1\|WP_148889698.1\|2693754_2695668_+\|cell-envelope-integrity-protein-TolA	unknown	unknown	gnl\|CDD\|274303
NZ_CP042818.1\|WP_024753220.1\|2703312_2704209_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_CP042818.1\|WP_024751719.1\|2692575_2693751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP042818.1\|WP_148878928.1\|2697538_2698735_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751722.1\|2686747_2688574_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889701.1\|2699026_2701477_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374435
NZ_CP042818.1\|WP_002695630.1\|2688570_2690040_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024751723.1\|2685920_2686727_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148889699.1\|2695692_2696586_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275380
NZ_CP042818.1\|WP_039914501.1\|2704249_2704816_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|273579
NZ_CP042818.1\|WP_148879154.1\|2706085_2708392_-\|DEAD/DEAH-box-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|236148
NZ_CP042818.1\|WP_024753216.1\|2708375_2709515_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP042818.1\|WP_024752184.1\|2701535_2701817_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP042818.1\|WP_148889373.1\|2690871_2692548_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_148879155.1\|2712057_2713464_+\|DUF814-domain-containing-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	2.33166e-42
NZ_CP042818.1\|WP_148879153.1\|2705227_2706049_-\|ferredoxin	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	4.96827e-07
NZ_CP042818.1\|WP_148889700.1\|2696595_2697537_+\|hypothetical-protein	gnl\|CDD\|376217	pfam18798, LPD3, Large polyvalent protein-associated domain 3. This domain is predicted to adopt an alpha and beta fold. The secondary structure arrangement suggests it to be a member of the BECR fold. The domain is found in polyvalent proteins of both conjugative elements and phages/prophages.	3.35051e-19
NZ_CP042818.1\|WP_148879633.1\|2702938_2703316_+\|hypothetical-protein	gnl\|CDD\|234601	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed.	1.79158e-46
NZ_CP042818.1\|WP_148889698.1\|2693754_2695668_+\|cell-envelope-integrity-protein-TolA	gnl\|CDD\|274303	TIGR02794, Protein_TolA, TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	1.90299e-09
NZ_CP042818.1\|WP_024753220.1\|2703312_2704209_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	9.57582e-164
NZ_CP042818.1\|WP_024751719.1\|2692575_2693751_+\|hypothetical-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	3.81516e-16
NZ_CP042818.1\|WP_148889701.1\|2699026_2701477_+\|hypothetical-protein	gnl\|CDD\|374435	pfam16210, Keratin_2_tail, Keratin type II cytoskeletal 1 tail.	0.00112613
NZ_CP042818.1\|WP_024753214.1\|2710297_2712058_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	1.7573e-115
NZ_CP042818.1\|WP_148889699.1\|2695692_2696586_+\|hypothetical-protein	gnl\|CDD\|275380	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.	2.80862e-31
NZ_CP042818.1\|WP_039914501.1\|2704249_2704816_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	2.4438e-69
NZ_CP042818.1\|WP_148879154.1\|2706085_2708392_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236148	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.	2.38008e-140
NZ_CP042818.1\|WP_024753216.1\|2708375_2709515_-\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.28689e-171
NZ_CP042818.1\|WP_024752184.1\|2701535_2701817_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.32031e-06

>NZ_CP042818.1|WP_148878928.1|2697538_2698735_+|hypothetical-protein
MKKNPIGKRLKEYTASAINTGGEVYEKIMASGKEHAEEQGAIENALCQLFDFIDYYRQPEIFNHQGTHLLKGLNFFSGLKKSRQEPYSSTKHKYKAMMIRVDDDAPLDTVWGTKWNAEHALRYYFNNDDCFVMEFTNEQEKNLLKNQFISDGWQVDGLPVEKSPHLNDQASLVNVNGIRMINNTVLQTAQAVRIAKGIYSLHFFIRGAMRNSKGVWQGKLNLKIVRKDGAAIFTKTYSCGMHWENIQEHLYFEQDGEYDCIFTCEKNVDIDFINLFPEVPYPSLSILIGHGGMRDLFSIFFAPHVADPKDKDDEKNFKDNEFIVFDLLDKYKFWFPFADDSESKRERLRLKIDFNDKHWGYWTEDIRWLDLLYVSALLDSLLPVGVKVFTIISSRRGS
>NZ_CP042818.1|WP_148889700.1|2696595_2697537_+|hypothetical-protein
MRIVIDADVSKQIIHTLKRLSEQQYFHEVLKLMQKTFVESKHPRDEAGRFTDKREEKTCLKENISSASDVKQALEAIKNTDIVNKKTGIIARISSTGINKMISNKAVEKSEANGFTRQEHYRAAAQIKDLFEKAHLIEARADKNNDPNIQSIKRFYSSVVLEDGREGKALITLKETYQSGHRIYTVELNRIIKPIDMRKAVAQYAQSAYSPSTSKGWETTDTHARTRTEQKAPTDFSIPHSQKKARAQNAALPKDFVSRCNMVSIQLMLLKWDIAAIQEETDRRNNMYDLVLKSFNGIVQELKKTQGSKQRRL
>NZ_CP042818.1|WP_148889699.1|2695692_2696586_+|hypothetical-protein
MITINGTEITELKYNGVEIEKAICNGVVVFEERKKNPGDISIKTSADSIKLRVTTKDGSPCELWNDGKKIAEMQSGTHQTVSIPNNAEEILIKGKDIQVLNCQHNQLTELDISGCTSLQELYCQYNQLTTLNASGCTRLQRLHCDRNQITSLNISGCTSLQHLYCYYNQLTTLNVSGLTSLEVLECYRNRLTTLNASGCTSLKRLVCFNNQLTSLAVSDLTSLQWLDCSNNKLSAEVFKKLFEDLPERKEKDGRVLLYKDGDSNYKDFTQPPELAAAFKAAKEKGWKFYKNNWSTEI
>NZ_CP042818.1|WP_148889698.1|2693754_2695668_+|cell-envelope-integrity-protein-TolA
MTIQDFFSTVKTNPFEIVKASDMDVGFQSIVDNASFLVRLAVQAEHDFIIGGQVTPIKDSLSVRVSPFIAFNKKTQRLLCKGTETIVELKAAHATKNRRDVLFITEKGWVDFKKENRARWFVARGNAGQTGQENSGFAKVEPLNKRQAFKVALAVISGENNSGTAKYCDEECVKLGEISVKASQTKFGKEDIFAVSALAENEENVGWTNETMRTFSLAPMSKAAMRFFKIHKPDGTLKDGVVGKSNLALSGGDMLTGDDIVIGKKIAVKAGSINPATGAFEYTIPFVGTERLEFTIFESAKIKEVFDVVFNAFAYVWKTFIANDAAVYRYAQGYTDLGIADLNKVFFEALQKEIQERIAAIDKEAKERKEADAAIKTFAEEAIAQEAQERKEADEKETKERKEADAEIKTFAEEAIAQEAQERKEADEKEAKERKEADAEIKTFAEKAIAQEAKERKEADEIEATARIEGDKQIKELAEEAISLSVPEGSTLGIYDDEEHKTFLKLDGKSFEPAEYPRFYEYWKEHLAFLGEDNEKKPFLPLVETADYTRLGEVVSFIGTDYHHEFLLCDGGPFSPDVYAEFYEQYWKKHLSHLGKDSIGWPLRPKLEGSIAGSNVYIKALPHVEHEFITPVIKTGK
>NZ_CP042818.1|WP_024751719.1|2692575_2693751_+|hypothetical-protein
MDFDYKIKTFDEIYTEMQLKVFGKILTATDANSGSVLCSLLEATARLIAEAYLHCQIGYAKYLQDLVEGAFGVKRLLGTKAKGKVVFFTEKGKPAASHLYIAVGTEIACGDTVFVTTESGMIDKGTEQSNPIFAEAKEIGEKGNVPSESVDTILSGLHSSIAGVKNIRPFENGTSAETDPELRKRFVNYLRGLQRTNFYGVKEAALSTKAYHVNVVLCAPPKDIPTRDFDGNPITEHNVNCAVYVCDKEGECSGALLDEVRKTLRGDGTYNNPGYTPAGVHLAVAPIVADRRFQGEGNKLNLEIFSVLPDKEEAKERVRKKVIEFFQGFEVGQSLIITDLILAVRQFDWVTDVIIKDMNLPQGSANPSATESHKLLVVKEEDVLITIKQQG
>NZ_CP042818.1|WP_148889373.1|2690871_2692548_+|hypothetical-protein
MRQGYLREGLWQNVYLIEFYVDNNTSPSESFAFGVPPESEEFVLTQRKTETKTFGGLVIDDYGHDALKITLSGSTVNNELRRMYHTTGSSEYVTGEEEIFRLKTLLEKYKGNINTLGKKILLYDLSKHTNRSRRKKTIDSFCWQVYPGEFKIKRTKEKPNVYTYSIEFTAIPAKDTFVFYNTIFGVDFNKAFDAIEQYLQKLEKSLSFFKSVLEKINEARRFAAACKEVALYAISGTINAFRILLDDTFQLGHSAIALYRETVGAEGIPALIFETGDFVAAMLIDFMTNINVLANNIHAMSKKEFYIPAGVFEDWEVTIEELDALSQLQCSGIYNELCALSVSAQMERPKEYTLPVARGAAITTYGMQIGLITDGMSFESIAQNHYGDSSKAYIIASANSAGSIDDLSARGQKNVLIPVLERSASNYQNRIIGLSGQRDNYGVDIALDENGNILLNELQTDFKFVTGRRNISQAVLMRLRENINKRVMLQLYGIKTTIPDSESAGSAYILSSIIQTLKQESRIKELLSVSFKGDGDALRIDIEYTDIGGQRRSLSELI
>NZ_CP042818.1|WP_148889697.1|2690046_2690868_+|hypothetical-protein
MRIVIRERSGQVTGQVPLQNTVPRIGMWGTVTDVDSTRNAVNVRLTGGVLLEDVPVASLDEWICEFKDEGYLSGSRNLPPENARVFVLMPTGTFEGAFVLCSSLSMFEKEHQKKFMSTKEQRTEKNVERLRVRPGKWIEKYNYKTGQLELTSSNEKVKIAITDDNNKKEVSVNAFGANITIDKDGNIAVKAATDKKISLNGENLSGIVKADELKTQLDKMSDRIDKMVNTFNGWVVLPNDGGAALATAMKTVIGTMVKEDFSNIKNDKVVHGG
>NZ_CP042818.1|WP_002695630.1|2688570_2690040_+|hypothetical-protein
MMITIHKSPQPKIEIFDYNAPTVPAFTLSAQTHEYTQLLSYSFTESTMDLKGRFQFSIAGGDNNLFNEIQPLQIVKIYEGANTPVFIGVIANKDLSCTMSQGGVQRQINFSGMSITGLIANFQLILDIKFLSLTQIMSAETINKDMVLRINELQTKEPLKIKKFLELTWDTYLGYVGVRYLKPTADKAPVKGKAGESNKIVYDIIKNFMGNDFFEVGEAESIPVPIANTFFNQGINTVQQIWQTILAPPVYEMFSRVNEKGKTKIVVRELPFSFRENGIVHNRWGKLPIRKIKSPHLVDYSLRLSIDEVYTTFFAYIEGSSLSADQYIVIEQTDGDKIEKKILQVDEKKLKTYGMKMLQVAFRGYKKQTEKTETITNAMHKLSLRLRSWFGRLDEMYTGSIRIINDFSEKQIRCGERVSFLGGEFYVRSCDHSWSYGGTPTISLQVIRGGKYNKGGEFVKVMPEMGTSNIELKFDGEETNSLVDISWAR
>NZ_CP042818.1|WP_024751722.1|2686747_2688574_+|hypothetical-protein
MGMKEVAIKLNLETGSFSSSAQTISDAFDKMLGKMKEAQEVGNFDLAAQYAKSAQQMQQVYNGMANGNQAGGGGIAGFNNTVGGISNTAQSVIGQIGAGDAAGGGLTLLGKGAGLLGKLGTGGAIAGAGLLAAVGAGWGVKKLSDLYTSHDDAAEALNASLNNTMRTRFDLSTKEGRGEWRQFAKDYPERKNDFEISKDGKTMIETLESRYKVNTKNIEDAFTKASAAANSFSYSMEDGLSMVKHLTQYGLSSGSYDVARNVFGWSRMMGIQKEEAADFKGTFSRYGNKDADSLAQAYRASSFMGMKEGQYSETLGLLQNIFTDGISKGFTKSIAEIGSTMTFLKNASGNNPLWMGEQGASRYQQLNESGRSATSLSSVSDILTYRAIASLSDAEKARILKEHGLESQGGYLDNMQIAELGFLPEIYKKKMGLFEQMSGKGNKAGMIEMIRKDTGFDYIQAAQFYELMNNGEINKDAYESITNASIRPEYTSRVGASTGSAELWRTWTAELGKGPAELTKFLSVFLSGTRQEEFNTGKLPGIGEGSVNNVSLIKELQQRKQDLAFELQTLYNTFFPDQEKIKENTEELKKINAQLELLLNGEIKVESR
>NZ_CP042818.1|WP_024751723.1|2685920_2686727_+|hypothetical-protein
MVKIKITADNPALQELAAAVKKIGRSDILPATDATFQGCAKMVADSWRAYGQGQKDIPGVPPMKKPSSNYSGGVKVKKSAPLEYTISNESKAAPLLEYGTDGYDMKTTHPYGKKSRVSKQKNPKTKMIELIPYLIVPFSWGTPGTVTFQNTMTEDIYAIAERMKKSVVMEETHFEENWAGEAIERHEYTWADRLNENDLGNADGMVRMSDTPTGKSTYWTFRIISAKSPKNSWINKGIPARNVTEGLKALHEKEIADAIQNALATDLG
>NZ_CP042818.1|WP_148889701.1|2699026_2701477_+|hypothetical-protein
MAFKDRKVLTTVKVNPYEIAKASDMEFGFRSILDNFSMLLNAIGATHTPLVDEAGFNNSNELKYVGKKEKDFIIGGGLVDAGNKQLRLLPILAFNNKIGLLISDGLDKDNKPIEIEIGSGSGSFILTHQEDYLYRIESVYIGNANTGEETSGTTANIKKSDPIWDEFQTEWRGSYRVGENDTMQVSTFNKRQSQAVRLFVDFGALVPRAADASANIPDERSIWSERVKIAEVLVCFKRNETNWIYEMQPITKDDVRFVTARCYFDWRVQEEVIEKAKAADSVWVQHAKVAKPNQNAQNQKAEEKRIAGINLDNKAWRAEHYNYRWTAEHTRTYRLGSIAEINEQLYKMHKSDGDIKERVIRLDHINLRPEDPNALRAEKIPIDLVGNADIPLPYNKEIKSYDDVKKGLRAIAETLRGDLIPVGPDDGSGNSDISLPHNKKIESKENIKKGLRVIAETLIAADEKTNTVNTTLNKKIDTVNTTLNSRINRVGEVLTNHINATNVHSATSDPTAHRIAMRDGNGRMQVASTDKNSGESIVNVNFLTSEWSPDFVMKVLRTKLITNQQEFDLWVGQENPNEMYTFVYLKGEFRSKQTIDLVKIGTMEVTGYPAAKISAYSERSGRSFYTGMKGDGSDRKVMNINLLSNDSRNLYYNCRLGIEKCTCINCIVDIYSSAGGRDEIVGFSESTCINCTADVSGASGYDGDKNIRDGTYGSGAIGFYKCDSENCTATVQGGYGGKGFGGNETWSDGGNGGNGGNAIGFSYGSVSNCSVEARGGSGGDGGRGSRFSEINPIHYSGWDGGHGGSGGDAKSYYGRI
>NZ_CP042818.1|WP_024752184.1|2701535_2701817_+|transposase
MRRYSQEFKQQALQLSDEIGTKEAAKNLGISYGTLTDWRKTKNRYKASDGAATAKAIVLDERERQLQREIKELKEANEILQGALAFFVKGWKK
>NZ_CP042818.1|WP_148879633.1|2702938_2703316_+|hypothetical-protein
MPKPLIQRISGVQGAARTAPYFLEELSPYAEKIHVATEDGSYGSKGFVTDILNPKDFDLILCCGPNAMMQSVKKILNDTPALFSLESHMACGIGACLACSVRTVEGMKRVCREGPVFPAKEVCFS
>NZ_CP042818.1|WP_024753220.1|2703312_2704209_+|dihydroorotate-dehydrogenase
MMKVDLCGIELKNPVIAASGTFGFGREFEEYIDLSLLGGISTKGLTLEAREGNPGIRSFETPAGMMNSIGLQNPSVEVFMRHELPYMESLHTEIIANVGGSKIEDYVQSVTLLENTSIRIIELNISCPNVKEGGMAFGIKCETAYQVVSAVRKATRKKLMVKLSPNAENIRAMAASCVEAGADMLSLGNTFNALAIDIKKRKPVFNNITAGLSGPCIKPIALRMVREAAKEVDVPVIGLGGIMNWQDAIEFIMAGAAAVQVGTANFTDPTVMLKIIRGIEQFMHDEGIKDLSEIRGII
>NZ_CP042818.1|WP_039914501.1|2704249_2704816_+|orotate-phosphoribosyltransferase
MEENLQILQDCEAVLQGHFLLSSGRHSDGYAQCAKLLMYPDKAAQVLSGVVRKLKELKIDKVIGPAMGGIIVAYEIGRQLGVPAMFTERENDVMTLRRGFTVEKGDRILITEDVITTGKSSLETIEALKDFGVEIVGLAAIVDRRNGADFPYPVYAALEFNVTSYTPEECPLCKKGLPLVKPGSRKKF
>NZ_CP042818.1|WP_148879153.1|2705227_2706049_-|ferredoxin
MATIKKVKAVFFSATGKTKNIILQCAKNLADNLAVPLETDDFTLPKNHTAVRQFSAEDLVVFGTPTYAGRIPNKVLPFVQELFQGNGALTVALVTFGNRSFDNSLTELQSELTKNNFRVIGAGAFVCEHAFADIALTRPDKTDFDLLNNLCTAVLDKLKTQTDFPALAVRGNEKLEGYYKPLGLDGQPTNFLKAKPITDMTKCDRCGVCIKVCPMGSIAADDPANVFGICIKCQACLVYCHTGAKSFDDPAFLSHKAMLEKNYTAPAASEIFV
>NZ_CP042818.1|WP_148879154.1|2706085_2708392_-|DEAD/DEAH-box-helicase
MKNSAKLFGKHFDPSDTEENSFDDFSDDGYRDADNFGELNDFSDEAYHDSVNDYDVESSEIFYDTESDEDSEPVIIPLDTAQIVEYLDETGSFASFFERYEVRHAQLDLTEEIANCFNNDSIGVFEAGTGVGKSLAYLIPAIKWALQNKERVVISTGTINLQQQLMEKDLPSAKKIIGKEAKDLKVLLLKGRHNYLCIRRLMQALQEPDLFNDDYDEIKKIQAWAATSADGSKAEMPFVPSDKVWAKVCAESDNCLGRRCPYYADSFVMKLKKEAAKASLLIVNHHLLFADLAARYEGYGYQTTAVLPPFKRLIFDEAHTMEDAAQSFFSKTFSQFELQRQINALYRHKKGKPIGVLPKLITIAHADEIVPEITKTLFELQTAYAVLDSEALPLCSSGAISFQQMLPYQRDALTQKLSAVRRNLEIVIQHFTALIDTVSDDEQSEDTVQDAKLILWRFRELKETAESFEQWKKLSEKVFWIEKIRSAQKETVRFHQTPLNLASLLHDAVFFPMRTVICLSATLKIGESFDYWLNRTGLNLPIDAPLITKTFPSPFPYKRNVLLNVPIDAPPPDDKEFQNWINKAIAEMIELSGGKTLVLFTSYESLKTACAHARAALKDTDLLILQQGEDDRSRLLNFFKENVSSSLFATTSFWAGIDVPGESLTHVILVKLPFSVPTDPVFKAKADAIDSAGGSSFMSLSVPEAVIQFRQGFGRLMRSQSDRGIVTLLDKRIIAKRYGQIFITSLPETRQCFDSFKNILYNIENFLF
>NZ_CP042818.1|WP_024753216.1|2708375_2709515_-|alanine-racemase
MRATKAIIHLDNLQYNIAEIKKRLKPGVKICLPVKADAYGHGAFRVAVAAIRAGVSSLAVASIQEGIDLRDAGIVAPIISLSLPILEEIHSIIEYNIHPLVIDSEFIHALNEEAARMKTVQAVHLKIDTGMNRIGCKPEDAITLAAEIVQLPNLKLEGVCTHFSVADSVSPENIAYTKKQLALFTQTLDALRAKGIDPGIVHAANSGAVLQYPEAQFDMVRPGIIVYGYPPSDCLADKIPLKPVMELVSQVVLIKCTPQGSDISYDRKWHADKDTFIATLPIGYADGLMRALSPGLKVRIGDTFYPIVGRICMDQCMVDLGSEPTVTRWDTAVIFGPSENSVKNNSAKELATIAGTIPYEITCDINKRVPRVYINEKLG
>NZ_CP042818.1|WP_024753214.1|2710297_2712058_+|aminopeptidase-P-family-protein
MTIPERLAALRKRMAEEGIDAYYIPSSDAHQSEYLPKYAKTREYISGFTGSAGTAVVTKDKALLWTDGRYFLQAEQQLHGSGFELCKMGEPGVPSIEEFFQHELRAGDTLGLDGKVTAAASYRQLKDCLPAIRFVADKDLVGSIWNDRPEPRYSTAYILEQKYTGKSVKEKLSEVRALLAEKKCDATVIGALEDICWLYNIRGSDVKSNPVLTSYAIIEKTQAKLFIDPRQMPKDVEEALRKEGVDCYPYEAVFEAAAKLDGVVFIDPSRTNIYLRNCIQAKVLEGINLTSILKAVKNETELKSIRNAMLKDGVAMVQIIKWIEENADARISECDVADKLLEFRAAQKDFIEASFGTISGYGANGAIIHYAPRPETCATLEPKGFLLLDSGGQYRDGTTDITRTIQLGPLTEEEREDYTLVLKSHIQLAIAQFKAGTPGYVLDGIARLPLWKAGKDYKHGTGHGVGFVLSVHEGPQSISNRYTINVPLEPGMVTSNEPGMYVAGSHGIRIENLTVTQVAIENEYGPFYSFETVTLCPIDTRPVIKSLLLPEELAWLNNYHKLVQEKLSPLLDAEHQAFLAERCKAL
>NZ_CP042818.1|WP_148879155.1|2712057_2713464_+|DUF814-domain-containing-protein
MSLNSAEINLILKELDIEGSYVQKIVQPSYSALVLFLYKNRAINLFIGLEGGACRLHETAKKIPKFEKPLRFMELLRSKIRGMKITQAEQLHNDRIIKISLSGGDEKLFLYIRLWSGAANIILTDSQQRIIDAFYRRPKRGEVSGALWNEPEPPQTASVFSVREYDSTKSFNQAIEEWYDQKAPKVSREALLEQAENLYGARIDKLRAVIKKLTAKRQTFSQNEQLKHQGDLLLSNLHLIKPNSDFVELEDYTAPGTVLRIQLNPQKTAKENAAFYYEQYKKAVSGLQALSEDIQAAENRIAGLQAELANIRAEENPRLIEKLLRKQPAATKQKPATQKEKTGLTFFVDDWTLHVGRTAAENDSLLRHVVKGADLWLHTRDYAGGYVFIKAKKNKTVPLPVLIAAGNLAVFYSKARKAGAADLYYTQVKHLRRAKNAPKGTVLPSNEKNLSVKLDPKILKMLESCRAD

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Crispr_ID: NZ_CP042818_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_16

2787846-2787993

Orphan

Consensus_repeat	Method
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_16

>merge|NZ_CP042818|16|2787846-2787993|CRISPRCasFinder
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTCAAGGCAGCAACGGCTCAAAAACTGTTTTATCAATCTCCTCAATCTTATGCAATAACGGCTTCAGCATTCCGATGGTAACGGGCACGGATGCCCGTGGTTC

>NZ_CP042818|16|16|2787846-2787993|CRISPRCasFinder
TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	AAGGCAGCAACGGCTCAAAAACTGTTTTATCAATCTCCTCAATCTTATGCAA
TAACGGCTTCAGCATTCCGATGGTAACGGGCACGGATGCCCGTGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_024753166.1\|2798558_2800235_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP042818.1\|WP_024753171.1\|2786145_2787468_-\|putative-aminohydrolase-SsnA	unknown	unknown	gnl\|CDD\|235963
NZ_CP042818.1\|WP_148879168.1\|2796194_2797541_-\|glutamate-mutase	unknown	unknown	gnl\|CDD\|379405
NZ_CP042818.1\|WP_002699340.1\|2777430_2777871_-\|molybdenum-cofactor-biosynthesis-protein-MoaC	unknown	unknown	gnl\|CDD\|237733
NZ_CP042818.1\|WP_148879167.1\|2788216_2789899_-\|selenate-reductase	unknown	unknown	gnl\|CDD\|236630
NZ_CP042818.1\|WP_002699342.1\|2776616_2776952_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224916
NZ_CP042818.1\|WP_024753167.1\|2794588_2795998_-\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_CP042818.1\|WP_002699321.1\|2791230_2792553_-\|YgeY-family-selenium-metabolism-linked-hydrolase	unknown	unknown	gnl\|CDD\|183836
NZ_CP042818.1\|WP_002699337.1\|2779293_2780265_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|239599
NZ_CP042818.1\|WP_002699312.1\|2797540_2798164_-\|cyclodeaminase/cyclohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377428
NZ_CP042818.1\|WP_024753175.1\|2780295_2781240_-\|XdhC-family-protein	unknown	unknown	gnl\|CDD\|224886
NZ_CP042818.1\|WP_024753169.1\|2789920_2791123_-\|diaminopropionate-ammonia-lyase	unknown	unknown	gnl\|CDD\|236186
NZ_CP042818.1\|WP_002699307.1\|2800236_2801130_-\|glutamate-formimidoyltransferase	unknown	unknown	gnl\|CDD\|131079
NZ_CP042818.1\|WP_002699320.1\|2792571_2793765_-\|knotted-carbamoyltransferase-YgeW	unknown	unknown	gnl\|CDD\|274517
NZ_CP042818.1\|WP_024753168.1\|2793794_2794460_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|377981
NZ_CP042818.1\|WP_024753173.1\|2784202_2785579_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274468
NZ_CP042818.1\|WP_081718799.1\|2781567_2784117_-\|selenium-dependent-xanthine-dehydrogenase	unknown	unknown	gnl\|CDD\|132354
NZ_CP042818.1\|WP_024753178.1\|2776948_2777452_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP042818.1\|WP_024753177.1\|2777871_2778840_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP042818.1\|WP_024753176.1\|2778820_2779297_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_024753166.1\|2798558_2800235_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP042818.1\|WP_024753171.1\|2786145_2787468_-\|putative-aminohydrolase-SsnA	gnl\|CDD\|235963	PRK07203, PRK07203, putative aminohydrolase SsnA.	0
NZ_CP042818.1\|WP_148879168.1\|2796194_2797541_-\|glutamate-mutase	gnl\|CDD\|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	5.03816e-158
NZ_CP042818.1\|WP_002699340.1\|2777430_2777871_-\|molybdenum-cofactor-biosynthesis-protein-MoaC	gnl\|CDD\|237733	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein.	1.88551e-43
NZ_CP042818.1\|WP_148879167.1\|2788216_2789899_-\|selenate-reductase	gnl\|CDD\|236630	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional.	0
NZ_CP042818.1\|WP_002699342.1\|2776616_2776952_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|224916	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only].	7.65451e-20
NZ_CP042818.1\|WP_024753167.1\|2794588_2795998_-\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
NZ_CP042818.1\|WP_002699321.1\|2791230_2792553_-\|YgeY-family-selenium-metabolism-linked-hydrolase	gnl\|CDD\|183836	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase.	0
NZ_CP042818.1\|WP_002699337.1\|2779293_2780265_-\|molybdopterin-binding-protein	gnl\|CDD\|239599	cd03522, MoeA_like, MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.	9.48134e-124
NZ_CP042818.1\|WP_002699312.1\|2797540_2798164_-\|cyclodeaminase/cyclohydrolase-family-protein	gnl\|CDD\|377428	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase. Members of this family are thought to be Formiminotransferase- cyclodeaminase enzymes EC:4.3.1.4. This domain is found in the C-terminus of the bifunctional animal members of the family.	2.71409e-72
NZ_CP042818.1\|WP_024753175.1\|2780295_2781240_-\|XdhC-family-protein	gnl\|CDD\|224886	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones].	3.30633e-48
NZ_CP042818.1\|WP_024753169.1\|2789920_2791123_-\|diaminopropionate-ammonia-lyase	gnl\|CDD\|236186	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional.	0
NZ_CP042818.1\|WP_002699307.1\|2800236_2801130_-\|glutamate-formimidoyltransferase	gnl\|CDD\|131079	TIGR02024, FtcD, glutamate formiminotransferase. This model represents the tetrahydrofolate (THF) dependent glutamate formiminotransferase involved in the histidine utilization pathway. This enzyme interconverts L-glutamate and N-formimino-L-glutamate. The enzyme is bifunctional as it also catalyzes the cyclodeaminase reaction on N-formimino-THF, converting it to 5,10-methenyl-THF and releasing ammonia - part of the process of regenerating THF. This model covers enzymes from metazoa as well as gram-positive bacteria and archaea. In humans, deficiency of this enzyme results in a disease phenotype. The crystal structure of the enzyme has been studied in the context of the catalytic mechanism. [Energy metabolism, Amino acids and amines].	4.43308e-154
NZ_CP042818.1\|WP_002699320.1\|2792571_2793765_-\|knotted-carbamoyltransferase-YgeW	gnl\|CDD\|274517	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with selenium-dependent molybdenum hydroxylases.	0
NZ_CP042818.1\|WP_024753168.1\|2793794_2794460_-\|PAS-domain-containing-protein	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	4.36089e-33
NZ_CP042818.1\|WP_024753173.1\|2784202_2785579_-\|hypothetical-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.44944e-116
NZ_CP042818.1\|WP_081718799.1\|2781567_2784117_-\|selenium-dependent-xanthine-dehydrogenase	gnl\|CDD\|132354	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase. Members of this protein resemble conventional xanthine dehydrogenase enzymes, which depend on molybdenum cofactor - molybdopterin bound to molybdate with two sulfur atoms as ligands. But all members of this family occur in species that contain markers for the biosynthesis of enzymes with a selenium-containing form of molybdenum cofactor. The member of this family from Enterococcus faecalis has been shown to act as a xanthine dehydrogenenase, and its activity if dependent on SelD (selenophosphate synthase), selenium, and molybdenum. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP042818.1\|WP_024753178.1\|2776948_2777452_-\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	2.54483e-69
NZ_CP042818.1\|WP_024753177.1\|2777871_2778840_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	1.46454e-91
NZ_CP042818.1\|WP_024753176.1\|2778820_2779297_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.32528e-77

>NZ_CP042818.1|WP_024753171.1|2786145_2787468_-|putative-aminohydrolase-SsnA
MIITNGKVITNDKNSTFYDNGAVYIKDNIIVDVGNSDEIKKHYKTETILDAKGGIILPGFICTHSHIYSAYARGISVTKPTDNFFNVLENLWWSLDSKLKEKDVELNALTTYIDSIMNGVTTVIDHHSGPQSLDGSLFIIAEAAKKLGIRTSLCYEVTDRYGDDVRDRAIKENIAFIKAAQKNESDMIKGLFGLHASFTVSDETLYKVREAMEGVYDGYHIHVAEGLEDELLCLKKYKKRIVNRLFDFDILGERTIAAHCVHINAGEMDILKKTNTNVVHNPESNMNNAVGTTNVLKLLEKGIVVGLGTDAYTNDMYESMKVAKILMSHEASDPTVGFAETKQMQFTNNPIILSKYFNKNLGVIEKGAYADIAVAEYNPPTPMHKDNWFGHLVFGLSGKQTIHTVINGKIVMKDREVLGIDVDKIMSESRIRAAEIWKEM
>NZ_CP042818.1|WP_024753173.1|2784202_2785579_-|hypothetical-protein
MEKDTKGLLFQLEGKPSLNETMPMAFQHVVAMIVGCITPALLVGGVAGANLSQDNLVLLIQMSLVIAGLSTLVQLFPIGKKIGSSLPVILGVSFAYVPTMQSVASTYSKNPAFGSEKAIGVIVGAMIVGGACALLFGMFVKYLKPLFPPLVTGTVVFTIGLSLYPIAIRYIGGGNAMAKDFANPKNLFVGFLTLAIVTALNHFGKGFIKLSSILISIIIGYLVSIPLGLVNFSKIASSSIIINQNPILHFAPQFETSVIISFVILFIVNSVQAIGDFTATTVGGLDREPTEKELSGGIIAYGITNMLGSLIGGLPTATFSQNVGIVGTTKVVNRRVFAQAAIIILIAGLIPKFGALLTTIPTPVLGGATIPVFSSITMTGIKLIAKEPLSFRNTSIIGLSVAIGMGVTAVPQLFNVEVYGPTALMVKTAIGSSPVVLATLCAIILNVIIPKKAEDIAK
>NZ_CP042818.1|WP_081718799.1|2781567_2784117_-|selenium-dependent-xanthine-dehydrogenase
MYELNINGLNYKTDKDKKLIRFLRDDLRLTSVKDGCSEGACGTCTVLIDGKPTKACIPTVAKSVGKTIITVEGLSDWEKEVYAHSFSIAGAVQCGFCIPGMVIAAKALNDTNDNPTEEEIRHAIRNNICRCTGYVKIIEAIQLSSDILHNRKSIEKEDEKTGVGTNTIKIDSYDKVLGTGMYTDDLYLENMAYGRLLKSKYPRAKVLSINTEKAEALEGVIGVLTAKDVPHNKIGHIIQDWDVFIAEGDFTRYVGDDLALVVAEDDETALKGLSLIEVEYEVHTPVSTIKQALSEDAPKLHEKGNMCAEKHVARGDAAKALENSKYIVTDKFTTPFTEHAFLEPECSVAFPYNNGVKVYSSDQSVYDTRKEIAIMFGWEPERIVVENMLVGGGFGGKEDMSVQPHAALAADKFKRPVKVKLTRQESINTHPKRHPMEAEFTIGCDENGILQGMKADIYFDTGAYASLCGPVLERACTHAVGPYNYQNTEINGYGLYTNNPPAGAFRGFGVCQSCFAIESLLNILAEKVGISPWEIRYRNAIRPGQVLPNGQITDPSTSLVETLLAVKEVYEKNKDRAGIACAMKNAGVGVGLPDKGRCKLVVKDKTVEIYSGATDIGQGIATVLVQIACETLGLKKHEVKFMVVNSKDSPDSGTTSGSRHTLITGEACRGAAALLLEDLKNSSLEELEGKEYFYEYFDPTDPLGSPKENPKSHLAYGYATQVVILDDGGKVADVYAAHGIGRAINKKALEGQIEGGVVMGLGYALTEDFPLENSVPKVKYGTLGLLKATNSPKVHSIIVEKEGIKEAYGAIGVGEITTIPTAPAAAGAYYAFDKKFRTNLPLKETAYKK
>NZ_CP042818.1|WP_024753175.1|2780295_2781240_-|XdhC-family-protein
MIETFVFARELFLKTTPFVIATIIDKKGSSPREVGASMIVTQNGLAQGTIGGGAIENEAIKKAKSLIEENSSSIEEYILTDNTAASIGMVCGGSNKIFLKYIDTKNKIYLEIFNRLIENYKEKETKLIFDLERLNIFANIDGEIFPNETISGNSFQLLVKDSIKVFVFGGGHVSKAFVKILDFLKLNSVVVEERAEFLEEKDFPNSKRILIGYEDIDTVNITSDDYVCIITRGHTSDSIVLEKVLEKNPQYIGVIGSKRKVALMFKNISDKYSKTMLDKIHSPIGLDIGAQTPEEIAISIAAEIIGEYRAAPLR
>NZ_CP042818.1|WP_002699337.1|2779293_2780265_-|molybdopterin-binding-protein
MKVIQTKDAVGKILFHDLTQIIPGKSKSARFKRGHVIKEEDIEVLLSMGKEHVYVYELDDTHYHEEDAARILAGICAGENIRLSDVSEGRINLISEIDGLLKVNVKLLHTINSMPDVMIATKYNDSVIKEGDVLAGTRAIPLIIKKEKIKNCLDSAQGEHILKVLPYKKQRVGIITTGSEVFSGKIKDGFKEVLTEKLLPFDFEIIHHSYSKDDIDSILTEIRAADKKNCDLILCTGGMSVDPDDLTPGAIKAYADHVVSYGTPVLPGAMFLVAHKNRTAVLGLPGSIIFNKKTVFDLILPKIAAGEIITKEYLISLGHGGLL
>NZ_CP042818.1|WP_024753176.1|2778820_2779297_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MNTLTHFDERGNARMVDISNKSVTKRKAVACGKITMNNNVFEKIKNKEIEKGDVLTVAQVAGIMAAKKTSDLIPMTHPINTEKLALSFELDETEHSVIAVCEAEIYAKTGIEIEVITGVSIALITIYDMVKALDRSMVISDIKLVHKSGGKSGEYNRT
>NZ_CP042818.1|WP_024753177.1|2777871_2778840_-|GTP-3',8-cyclase-MoaA
MSIIELKDSFNRKIDYIRVSLTKNCNLRCKYCMPECGVYKESLLKIKDYEKVLLALSEVGIKKIKITGGEPLVRKDTMDLVKSLKESKKFTKITLTTNGLLIDKYIDEIINYMDGVNISIDSLNDSMYKYITGGELQNLKENIRLLLKRGYKNIKLNTVLIRGFNDKEILNLITFAEDNNLILRFIELMPMGNGKAYNKFSREEIDCVVSKVYKNKKRYNGKLGNGPAEYFTYDNLKIKIGFIDALGHSFCKNCNRIRLDSDGKIVFCLCYDTGFSTLDYIDGSITKDEFLKRVTQEILLKPMENIFNKKSESSYSMNELGG
>NZ_CP042818.1|WP_002699340.1|2777430_2777871_-|molybdenum-cofactor-biosynthesis-protein-MoaC
MGTLISINISPKRQTVKKEVTEANLIENFGIENDAHGGNWHRQVSLLSYESFLQFKDTIKIPMEHGIFGENLLISGIDFSKIKIGDRIIISNAELEVTQIGKDCHKGCEIKDIVGRCIMPEEGVFSKVIQGGAIKKGDAVCLKSIL
>NZ_CP042818.1|WP_024753178.1|2776948_2777452_-|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MFKVHIITVSDSSYYENKKDLTGPALRDFLTEHSFEVCGYDIVPDEINPISNLLIEISDSQKVNLVITNGGTGFNKRDVTPEATLKIADKIVPGFGEEMRRRSLEITPFGILSRAVSVIRNHTLILNVPGSPKAAVENLGFIITAIPHALKILTNEKNDCAKVDDSR
>NZ_CP042818.1|WP_002699342.1|2776616_2776952_-|LysR-family-transcriptional-regulator
MKNKFNHYIKITLVNENKFFGPGVYDLLTLIKKEGAIKTAAQKMGLSYSKALKMIGNMEKELGSKIVDRKSGGITGGESTLTEYAEQFLENYKKFEEEVKSYSEKIFNKYF
>NZ_CP042818.1|WP_148879167.1|2788216_2789899_-|selenate-reductase
MSDTMYGVGFKNILKHIFTEYEKKQTIYNVKGIFKKNNDKVLKIFGSDLESPLGVAAGPHTQLAHNIAADYVGGARFIELKTVQYLYGEELGIQRPCIRADDEAYNIEWSSEFRADIARDEYVRAWFVCKVLAKELDLGSPEGFIFNMSVGYNLEGIKHPLIDEFIETLKDARNTKVYKQCKEDLIELLPMFKKVDREFIESISPNICNSLTLSTMHGTPPEEIEKIVKYILTEKKLHTYIKCNPTLLGYEYVRKVLDEMGYDYIQFGRHQFDIDLQFDDAVVMIKNLQNLAKNLNLEFGVKLTNTFQVAINNRELPGSDMYMSGKALYPLSIATAAKLSKAFDGKLPISFSGGADKNNIKELFDAGIFPVTVCTVLLKPAGLDNLKQLADKLEEVEYKKNKITDTEKIEALRKDSLKNKNYIKSEKERKKYDLHKSFEGIKDDSYECRVLCKNCIRVCPNRANEELVLDDKKIIVHIDSVCNECGNCQFYCIEPARPYKDRITIFNTLDDFHNSENPGFYKKQGEFYYRLNGDEGVGELPKELKNIYSKIAEDMPYYIE
>NZ_CP042818.1|WP_024753169.1|2789920_2791123_-|diaminopropionate-ammonia-lyase
MEKILLASMRKDPRDVDIRFINDTVAKRVINFHKSFPQYEKTPLVELAHLSNYLGIKNIFVKDESYRFGLNAFKVLGGSFAIGSYIADRLGMSVEDLPYERMISKEIKEKLGEITFATATDGNHGRGVAWTANQLKQKSKVFMPKGTARERLDNIRAENADADIYEYNYDECVRLADEYAKTHNGILVQDTSWEGYEDIPRYIMQGYMTMAYEAYNELKEKGSLPTHIFLQAGVGSLASAVTGFFANVMKDAIPTIVIVEPHKAACLYQTAKADDGKLHPVTGDMDSIMAGLNCGEPVTVGWPILKKYAHSFLSVDDCFAAHGMRLLGNPLKNDKKIISGESGAVTAGVVSKLMTDDSLKNIKEKIGLDSSSIVLCFSTEGDTDKDNYLKTVWDGKDSSL
>NZ_CP042818.1|WP_002699321.1|2791230_2792553_-|YgeY-family-selenium-metabolism-linked-hydrolase
MANMDFEKIKAKAAEYHEDMIKFLRDLVQLKGESCEEGEKAKRIQQEMDKVGFDKTWIDKQGNVLGEMGTGKTIIAFDGHIDTVGIGNRDNWKFDPYEGYEDEHTIGGRGTSDQLGGPVASVYAAKIMKDLGLLNDKFKVLVTGTVQEEDCDGNCWLYMIEQEGIKPEFVVSTEPTDGGIYRGQRGRMEIRVEVSGVSCHGSAPERGDNAIYKMAEILKEVEALNENPADDSVEIKGLVKMLDKKYNPEYEEANFLGRGTVTTSEIFFTSPSRCAVADSCAISLDRRMTAGETWESCIKEIEDLPACKKHNAKVTMYKYARPSWKGLSYEQECYFPTWVIPKDHKVTVALEKAYKALYGDKRISPPIKKEEEKRFSRPLVDKWTFSTNGVAIMGRHKIPTIGFGPGAEDQAHAPNEITFKQDLITCAAVYAALPTMYIEG
>NZ_CP042818.1|WP_002699320.1|2792571_2793765_-|knotted-carbamoyltransferase-YgeW
MDFKELIGSLDKLDFKGLYNENFFLTWDKTDDELKAVFAVADAIRKLRENNKSAKIFDSGLGISIFRDNSTRTRFSFASACNLLGLEVQDLDEKKSQIAHGETLLETANMVSFMADVIGIRDDMYIGKGHTYQKEFADSVKLGYEEGILEQKPTVISLQCDIDHPTQMMADTLHFAHYFNGFENLKGKKIALTWAYSPSYGKPLSVPQGGIGLWTRLGMDVVLAHPEGYNVMEDVVGVAKNNVKKYGGSFTISNSMEEAFKDADIVYPKSWAPFAAMEERTELYGRGDFDGIDKLEQRLLKQNATHKDWTVTEELMKLTKNGNALYGHPLPADITGVSCEAGEVDKKVFDKYRKELYTEASFKPYIIAAMIFLQKIQNPKAKLEELWNKDTARINDK
>NZ_CP042818.1|WP_024753168.1|2793794_2794460_-|PAS-domain-containing-protein
MERDEKERILEQYISIAQFISVVAGPNCEVVLRDYHKGYSKIIFMVNGRLSNRKVGDEITGYTLEKIMRSDYRKHDCVLNYIIINESNQRVFRASTYYIKQGGELIGLLCVNYDLTKYLEFRDFYTNEVLYGLEENLAGSKDYFDESMDSILEGIIRNVFVHWDRNIPVKNIESEGNPIRELYKLNVFKYKGSVNKVAELLDISAQTIYRYLGEIEKSIQE
>NZ_CP042818.1|WP_024753167.1|2794588_2795998_-|dihydropyrimidinase
MNILIKNGTIVTDSEVKKADVFIEGEVIAGIGDFAHKEKTCEAVYDAAGLYVMPGLIDPHTHMELKQSETYTSVDDFYTGTIAAACGGTTMIIDHIAFGPQGCNLHYSLNNYKELGKKSVVDYSFHGVIQHVDDSILEELYDIVKNEGIASFKAYSTYGYAMNEVDFYKIIEVMKKAGGLLTIHCENDKITNYLRNKFVSENKISPIYHAYSRPNEAEAESVDELLNLAKLIGDGPIYIVHTSAHESVERIRLGRALGQKNLYAETCTQYLTLTEEKYFEDGDEEGMKYLMAPPLRKKADRESLWNALEDKTLQVVATDHCPFNLKRDKLPHIKNFTASPGGAPGVEERPMVVFSEGVMKGRMSLNRFVEVMSTNAAKIFGMYPKKGALKVGSDADITIIDPNRKKTISVKTQHSVCDYNTYEGFESKCSIAMVFLRGKLVAQYGKFLGKKGDGAFVFRKREQAYAAVR
>NZ_CP042818.1|WP_148879168.1|2796194_2797541_-|glutamate-mutase
MKYLLVDLGSTYTKLHIVDTEKNAVTAAASAYTTVETDVAVGFNVAFQKLKDAGAADYDRILGCSSASGGLKIVVIGFSKSLTTEAARLASLSAGGRILKIYSYELSDEDVAEIEKSGADIIVLSGGTENGNKQNIIVNAEKLSAANLQNATLLVAGNTAANPKIKAIFEQSPIVPVFTENVMPATNVVNYKPLRETIGNIFINTIAFAKGIHELSKNFEILLPTPVAVQKAVAAVKKVKGAEVMAVDIGGATTDVHSVAKSFHGEENILSPLFEDPYEKRTIEGDMGMRYSACALYESVGEEAFRKFGIENAKEKTDFRFRNTAYIPETFDEYEFDQIMAHIAAKEALKRHVGTVKKVPTSTRTMFQQNGKDLRFVKYFIGTGGVLIHSKAPERILCAIHQMEENYLAPKNCTFLLDKSYLLASAGLIATVDEQAACKLLEKYLEKV
>NZ_CP042818.1|WP_002699312.1|2797540_2798164_-|cyclodeaminase/cyclohydrolase-family-protein
MLKDLTVVEFVNETASNSPAPGGGSIAALNASVAAGLLTMVANLTVGKKKYLDVSERMEEIAKVCGKYKDTFVDGIDKDANSFNGVMDAMKLPKETESEQKVRSAKIQEGYKEAIAVPLSLGTEVTALYPYAKELAETGNANAITDVAVALINIKAAVEGAFLNVRINLNSLKDEAYKAELNKKMDEVQALVKKNDAEIMEIVKTKL
>NZ_CP042818.1|WP_024753166.1|2798558_2800235_-|formate--tetrahydrofolate-ligase
MEFKTDIQIAEEAKLEPIADVAAKIGISSDELENYGKYKAKISWEALDRLESKKDGKLILVTAISPTPAGEGKSTVSIGLTQGFNKIGKKSAVALREPSLGPVFGVKGGAAGGGYAQVVPMEDINLHFTGDIHAITAANNLISAMIDNHIHQGNALNIDTREVVWKRVLDMNDRSLRNIVISLGAKADGVPREDHFMITVASEIMAVLCLSKTLTDLKERVGKIIVAYAKDGSAVKVSDLKAEGAVAMLLKDALKPNIVQTLENTPAFIHGGPFANIAHGCNSILATKLALKTSDYAITEAGFGADLGAEKFMDIKCRMSGLSPDAIVIVATIKALKMHGGVPKTELKAENIAALEKGFANLKRHVENVHKFGVPAIVAINKFANDSDAEIAKLKELCKQLNVRISLCECWEKGGAGAEDLAQQLVELIDEGKKDFKYLYDVNDSIETKVNTIVKEIYRGKGAVFTKAAKGQVKKLEALGLDKMPICVAKTQFSFTDDASVMGAPEDFTIEITDVRVSNGAGFIVVQTSNIMVMPGLPKIPAAENMDIDNNGRVSGLF
>NZ_CP042818.1|WP_002699307.1|2800236_2801130_-|glutamate-formimidoyltransferase
MKRVMCIPNYSEGRDLEKIEKIVECFRAKENVRLIDYQPDADHNRVVVEVIGEPSAVVKAVIESVKVAAQVIDMSTHQGAHPRMGAVDVIPFIPVTETTTAECVEYAKEVGKAIGDMGIPVYLYEDAATKPERTNLASIRKGQYEGFFDKIKDSEWKPDFGPAEMNAKSGVTAVGARFHLVAFNVNLNTPNLEVADKIAKKVRFIGGGLRFVKAIGLELKEKNQVQVSMNLVNFEKTAIYQALEMVKSEARRYGVSVANTELIGLLPLQALIDSAAYYMQIEDLKAEQVLETLLIGE

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Crispr_ID: NZ_CP042818_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_17

3147518-3147808

Orphan

Consensus_repeat	Method
CGAGTTTTAAAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	PILER-CR
AAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTGTTTGGAACCACGGGCGTCCGT	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP042818_17

>merge|NZ_CP042818|17|3147518-3147808|PILER-CR,PILER-CR
CGAGTTTTGAAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTGTTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCTTGCGAGTTTTAAAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTGTTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCTTGGCAAAACCAAACCTTGCGAGTTTTAAAGCTTTGCAAATAGTTTTGCTTTAAAACATCGTTGCTGCTTGGAATCACGGGCGTCCGT

>NZ_CP042818|17|1|3147518-3147787|PILER-CR
CGAGTTTTGAAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	TTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCTTG
	GCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCTTGCGAGTTTTA
AAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	TTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCTTGGCAAAACCAAACCTTG
	GCCCGTTCTGAGTTTTGCCGTCCTTGGCAAAACCAAACCTTGCGAGTTTTA
AAGCTTTGCAAATAGTTTTGCTTTAAAACATCGTTGCTG

>NZ_CP042818|17|2|3147527-3147808|PILER-CR
AAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	TTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCTTG
	GCCCGTTCTGAGTTTTGCCGTCCGTGGCAAAACCAAACCTTGCGAGTTTTA
AAGCTTTGCAAATAGTTTTGCTCTAAAACATCGTTGCTG	TTTGGAACCACGGGCGTCCGTGCCCGTTCTGAGTTTTGCCGTCCTTGGCAAAACCAAACCTTG
	GCCCGTTCTGAGTTTTGCCGTCCTTGGCAAAACCAAACCTTGCGAGTTTTA
AAGCTTTGCAAATAGTTTTGCTTTAAAACATCGTTGCTGCTTGGAATCACGGGCGTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_002700663.1\|3153391_3154555_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NZ_CP042818.1\|WP_024752765.1\|3135617_3136376_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752755.1\|3150803_3151502_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP042818.1\|WP_002700662.1\|3152058_3152676_-\|MptD-family-putative-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|370580
NZ_CP042818.1\|WP_148879325.1\|3143262_3143445_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752759.1\|3145583_3147365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002700640.1\|3140940_3141933_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP042818.1\|WP_148879521.1\|3136456_3136993_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_002700644.1\|3142577_3142979_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|131417
NZ_CP042818.1\|WP_002695852.1\|3137108_3137390_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372498
NZ_CP042818.1\|WP_024752752.1\|3154629_3156690_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP042818.1\|WP_024752761.1\|3141953_3142568_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP042818.1\|WP_002700654.1\|3148074_3148293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_052335732.1\|3149202_3150810_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP042818.1\|WP_081718756.1\|3156643_3157147_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP042818.1\|WP_148889758.1\|3148330_3149080_-\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|372554
NZ_CP042818.1\|WP_052335653.1\|3137588_3138842_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|379256
NZ_CP042818.1\|WP_148889757.1\|3143714_3145565_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP042818.1\|WP_002700668.1\|3157143_3157986_+\|FAD-binding-domain-in-molybdopterin-dehydrogenase	unknown	unknown	gnl\|CDD\|366378
NZ_CP042818.1\|WP_002700661.1\|3151498_3152053_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_002700663.1\|3153391_3154555_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	6.66971e-144
NZ_CP042818.1\|WP_024752755.1\|3150803_3151502_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	3.38388e-15
NZ_CP042818.1\|WP_002700662.1\|3152058_3152676_-\|MptD-family-putative-ECF-transporter-S-component	gnl\|CDD\|370580	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.	4.94323e-48
NZ_CP042818.1\|WP_148889758.1\|3148330_3149080_-\|leucine-rich-repeat-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	9.15763e-22
NZ_CP042818.1\|WP_002700640.1\|3140940_3141933_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP042818.1\|WP_002700661.1\|3151498_3152053_-\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	6.75385e-23
NZ_CP042818.1\|WP_002700644.1\|3142577_3142979_+\|diguanylate-cyclase	gnl\|CDD\|131417	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to.	8.32044e-34
NZ_CP042818.1\|WP_002695852.1\|3137108_3137390_-\|hypothetical-protein	gnl\|CDD\|372498	pfam13146, TRL, TRL-like protein family. This family includes the TRL protein that is found in a locus that includes several tRNAs. The function of this protein is not known. The proteins in this family usually have a lipoprotein attachment site at their N-terminus.	1.31241e-07
NZ_CP042818.1\|WP_024752752.1\|3154629_3156690_+\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	3.15386e-40
NZ_CP042818.1\|WP_024752761.1\|3141953_3142568_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.41833e-86
NZ_CP042818.1\|WP_052335732.1\|3149202_3150810_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	2.36425e-87
NZ_CP042818.1\|WP_081718756.1\|3156643_3157147_+\|hypothetical-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	3.65345e-47
NZ_CP042818.1\|WP_052335653.1\|3137588_3138842_+\|ISNCY-family-transposase	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.57058e-09
NZ_CP042818.1\|WP_148889757.1\|3143714_3145565_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	3.31882e-60
NZ_CP042818.1\|WP_002700668.1\|3157143_3157986_+\|FAD-binding-domain-in-molybdopterin-dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	5.96053e-34

>NZ_CP042818.1|WP_024752759.1|3145583_3147365_-|hypothetical-protein
MKKKLVCFFVAVFAMILLYGASPKDEAHKRLYQKEIDEALQNEVPADSIGDWYEALQTTMCMLIRRTELYRGDMRCIISNAPQARCAVYPDGTIVFTTGLLDYADTVLFQAVMSTPRLARNFNSERERFIAPILADALARFAFHFERPSVYAVHAPAVQEYSDRLTQALLQLAGYSPSLFVTWLERLQDIQTDSYNAEFFSSFYEQQNIPDRLTALHTSSVFFLAEDLSDILFALQTNIGTADAVQTIQGLVKRFPHNIYFERLQALALHKAWLNSLSVKDLELAHFLPLACNDAKTLRSLYENLAAAGKNAQMKFKTTTRKAVAGSRGYYDAAVNAYQTYLADMPEYGMQSAYARLLFESSEKAALALRLAKNAAGFEKDSDSLTARANFATMLYYSGTSYTEALAIMQKLNAQSGSTNSREQMEVSMPKETDMRLISYNYAQMLLGLGETVKAEKIREEMKAMLYPKTQGQPFVLRNIKLKDNTDKLLEHWGKPSSIIYNFAVERWVYANLNVQVYLSTYDSVEQIFGIAVERESPVSLPGDVRTGDTRASFEAFYGKPVYHCADKDVYFFNGNTLAVLYCENIIQTVTLE
>NZ_CP042818.1|WP_148889757.1|3143714_3145565_-|RNB-domain-containing-ribonuclease
MKKGNPVLYKNRPALIIDEQADKFEIETENGTKRVREKDMNLLHAGTVNSLKELLSAPLPSGNIEDALEFFEVESESFFEFAELVWGEYPASAAWAVWDATLSNPLFVCTAPNEPVKIRSKEELEALTKKQNEKNAAEELKRQFVLALKKALQGKEIAVFDCETYAPFLQEIEALALGKTEQSKYLKEAKIAETPESAHTVLLKTGFWTAQKNPYPARFDHSLYSSKIDIPPLKRAENITDLSGIPAFAIDNEGSTDPDDAISFDGKYLWIHVANPADTIEPDTKSDIDARGRGATLYAPEGASRMLGEKAIEYFALGLTPFSCALSFKIGINNEGEIISVGIERTKIAVTRMTYRQAEEKKDDAALKPLFEIARRNTERRHAAGAVSIEMPEVYISVDKDKTVHIQEAQKFESMDMVREMMLLAGEAAARFAFKNAIPFQYISQPFPELPKKLPEGLAGEYKKRRAMKPRNVGTIPSIHAALGIALYSQVTSPLRRYGDLVCHQQLLRFIDGKPLMPADDLVLRIGAADAATRNAILAERCSKKHWTLVYLLDNPDKIFRAIVLETVGNKAHIIIPALAYEADITVKEPLELNAEISVKAAKIFLPKLEAHFIHV
>NZ_CP042818.1|WP_148879325.1|3143262_3143445_-|hypothetical-protein
MVPNRIEFENYHSILGVFKLTGIILPRTAKTELPRMAVVPNRNDVLKQNACKALKLVVWF
>NZ_CP042818.1|WP_002700644.1|3142577_3142979_+|diguanylate-cyclase
MVGIVVVSHSKNLADEIITLAREMKQNDFPLLNGSGIDGEHFGSDPMIIKETIEKAYLDGGVIIFVDLGSSILNTEMAIDFIDEAAFDTSKIKIADAPIVEGLIAAVPINDEKATAEDILTEMEDFKNFSKVK
>NZ_CP042818.1|WP_024752761.1|3141953_3142568_+|dihydroxyacetone-kinase-subunit-L
MKPYEILSKVIDVIAENKEYLTELDRAIGDSDHGVNLDRGFQKIKSELTAYENMNLAEMANKIAMTLISNVGGASGALYGTAFMKAGMFLKTQTEINDVVIAEALNQMIAGIKSRGKAERGEKTMLDTLIPVYEFVKAAADKGDSLLDTADEIAEIAKKSMEATKDIKATKGRASYLGERSIGHIDPGAYSSYLIIKTICENIR
>NZ_CP042818.1|WP_002700640.1|3140940_3141933_+|dihydroxyacetone-kinase-subunit-DhaK
MKKLINAPENILQEMVGGLVKAHGDLVKNIADLPVIVRKNKADKVCLVSGGGSGHEPSHAGFVGEGMLDAAVAGEIFTSPSADKVYEAIKAVDSGKGVLLIIKNYSGDVMNFEMAAEMAEMEGIKVAKVIVNDDIAVENSTYTVGRRGIAGTVLVHKILGAAAEKGYSLEELVALGNKLIPNIKTMGMALKPATLLSTGKLSFDISDDEVEIGLGIHGEPGTHKEKINTADYFAELLLTKILDEHTLSANSEVAVLVNGLGDTTLIELYILNNKIQQMLAAKNIQVVDTLVGNYMTSLDMGGFSITLLKLDQETKDFLKAKANTIAFKRF
>NZ_CP042818.1|WP_052335653.1|3137588_3138842_+|ISNCY-family-transposase
MKLFMSIDQITRGHVIANCLEGRCTVQQAALRLNLSRRRVQQLKKAFKEKGLAAMLHGNSQRPSAKKTSKEIEQRLLALRSDPALSKSNFLHFHEIVTEEYQLQLSYSTLRRILLSHGIYSPKKRRTRKKVHKTRNRRACFGELLQVDATPFPWFGGKEKSALHAFIDDARGMITGLYLCKNECLLGYLEVLRQTLENYGLPAALYPDKCSVFFVNAKKQLSIEEQLQGTKEQVTQFGKIIKYLGIDMFPAHSSQAKGRVERLWQTLQSRLPVEFARRGITTIEQANQFLKEYIGIFNKQFGVPACDSYSMFVPTPKTLDLDKLLSSVITRKLSSGSTISIKNHLFKIEQNKFGAGTTVNVLISQKHGIRALIHDEFYPIVPLDDIYRTDTVGRTGDLPQVVIDLIYEFLLKDAKAG
>NZ_CP042818.1|WP_002695852.1|3137108_3137390_-|hypothetical-protein
MKKIFPILIVVGLILASCSTTAPIAGATGKVGPKTGEAKQKWLFGLPLKGEGGIQAAANNGGIKTVGTVDVRIDWPASPVIPYHVVTTVVTGE
>NZ_CP042818.1|WP_148879521.1|3136456_3136993_-|hypothetical-protein
MKFSFHSLFLFLLFSPLMICSCVSSSSTIFKNSNKVLVMTFDGNALKYYLRPEIMLGKDKNSSVNIDFSYQKRNDAYISDSYTNFTLNYNTSAYIQSAQFNIPGKEPVVCNNITTLNRNVSQKFIRVQTIVLQKDMETLMNSFEIPEFNLSIELTDGTVLFFTPSKTLIETIREEKMR
>NZ_CP042818.1|WP_024752765.1|3135617_3136376_+|hypothetical-protein
MAEGKEHDKHIAQIFKKSFLSGKSEKLSAIQDAVYLLMDLTMRDKNSKRANRATRRLREWNIADINGEDIAAFESSASTHQYYAHLGWNYDYTVDGLHEQEKTAEWQSWTRAQCEEFKTHLQNCQRRFMLGKSILCKTLQVIFPHLPPSRINALARLCYYTHIYGDLRWNSRLDYLIDMPQFRSGLIAAVADFYDGTGKERQGIEITARIKQELPDGLVFTIPAAGDDAPLEEWKHCIPLNKAMDTVWGLEI
>NZ_CP042818.1|WP_002700654.1|3148074_3148293_-|hypothetical-protein
MKTMMKKAAVIAMTVFLLLAICTSCNSSREPDTVILTVKTNRNVKEIAEIKLNVKKVVTNLILGNWSLQAKL
>NZ_CP042818.1|WP_148889758.1|3148330_3149080_-|leucine-rich-repeat-protein
MKTIKTMIKKAAVIAMTVFLLLGGSFGFAQKSSTDGNFETDGKGLITGYKGTPPVKLVIPDKIGKEKIIGIGKNAFRGAESIQELKLPKTLVLIDNYAFILCRNIKSLDLSRCGKLEKIGDGAFSDCNGIGMLALPANLAEMGEEVFAYCESIPDINLSKCTELKTIAIRAFFGCTNAIITLPKSIEAIGEDAFGNEMYMDSSNNAEDSESNSEGKVYNYTCKEVRVPKAKVSLVTEEPCNFGGKVTPY
>NZ_CP042818.1|WP_052335732.1|3149202_3150810_-|ABC-transporter-ATP-binding-protein
MVEKDKAEKIVEIRNVSFQYENGVQDAAVINNVSLQVERGECILLTGISGCGKTTILRLMNGLIPHYHAGSFSGEIKICGENVSDKPIYEISKKASTVLQNPKSQFFNLDTTSEIVFFLENMGTPFEKMHERLTEVSNFLGIKHLLDRSIFQLSGGEKQMIAIASALASDTDILLFDEPTSNLDVSYIEKIAAVLKRLKEAGKTLIISEHRLYFLKDVIDRALIIKDGKIAQTFSANEFSSLTEDERKQLLLRPINFESNVFCKPKNHKTETFENGSDEGSEKNLNDKNTELCTELYIKNLRYRFPKEKINTIEIENLKLEFGKVIALAGKSGQGKTTFAHCLAGLTKGNKDAVFFSDKTCTSKTSESKKLSSKKLSAKKRLTFSYIVMQDVGYQLFTESVADELELGKNKTDSSIDIEQILSALCLTELKDRHPLSLSGGQKQRVSIGAAVSSGARILIFDEPTSGMDYFHMKETAELINSIRSPEKLILIISHDFEFLSLVADELLLMEDGKIISQNPFTESEAEKTFEYLKA
>NZ_CP042818.1|WP_024752755.1|3150803_3151502_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKKIVLDPRTKLFLTFCMGLSITVMVPLYVEVLNMLLLAFLFFTNGQVKSAIKLMLFFLILVCLSFLPVTNGFVSNVIFQITFMIRRFMLPIVAGKYLIDSTPVGLLMSALEKLKLPQSLVITISVMLRFFPTLSEEYTHIKNAMKMRGIGLNASHVIQKPLLMLEYVMVPLLASASRIGDELAASAHIKGVDAGCEKVRYKSAKFSSADVFISMYIVAGFVLVIGTRVGLW
>NZ_CP042818.1|WP_002700661.1|3151498_3152053_-|isoprenylcysteine-carboxylmethyltransferase-family-protein
MQKNHLPLLGVGPLYVISIILITAAGGLFTCLGIIAGGKIPLIVPCVIAGICFIGIGIALWIAAVFFSKIDANIIANKLVTDGVYRIVRNPIYSAFLFVCTGVLLLFCNWYLLLLPPIFFLYLTLLMKYTEEKWLLQQYGEEYQDYCKRVNRCIPSVRGLLHGGNKGFGNKNAGNTGNPMEEHK
>NZ_CP042818.1|WP_002700662.1|3152058_3152676_-|MptD-family-putative-ECF-transporter-S-component
MEETNLQNNKPVEKTGLVLKDFVNIGIFTVIYFVALFIVGTPLGILVVTYLAYPFTASLVLGILGMFLLAKIQKPFGLFIFAALPGVLTTVLGHTPVVAIHSLIVAAIAELVRKFLGYKTIKGSIAGYAIMSLWFVGPFWQIFILKDQYYALTEKMMGTEYAIQLTSLPIWVIPMLYVTSCIGGILGGLLGAKVLKKHFQKAGLV
>NZ_CP042818.1|WP_002700663.1|3153391_3154555_+|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MKNRTVPFFKPSFTTEEEEAVCRVLRSGWLTTAKEALDFEKEFADFVGAKHALAVNSATSGLLLSMHAAGITAGTKILTSPYTFISTATTALHLGGGIVYADIEPDSYNISPEQIEEKLKRDPQIKAIVPIHIAGNVCNMREINRLAKQYGVAVIEDAAHSFPSKTAQGYAGTLGTLGVFSFYATKTITTGEGGMVCTNDDALAKRISVLRSHGINRTIWDRYTDSKASWVYDVSDLGWKCNLPDILAAIGRVQLRKAESFFQKRKAIAEQFNKAFSQYDFLQTPPDGDGNAWHLYLLRLVPEKISVTREAFAQALQEKGLGISVHFIPHFEFTYIKEQLGVQAKDFPQAAAKYANTITLPFWPDMSDEDIAYVIDTVIQTGKEFAR
>NZ_CP042818.1|WP_024752752.1|3154629_3156690_+|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MKKFVSDIHFENEYFSLLIRSPIAEGVLLGIDVPELPENCFFYSAKDVPGINKIEVFGSSIPIFAGPELNYKGESIGILVGNNLKTLYDVSKQFVIRAQSTPTEEFEKPIDFFDYPKFAHESRSYNNADGILDSADTIIYSSTVFEPQYHYFAELPIVKACPGNKTLSVYASSQWAAHVKKSVSEALKMPEKNIDFFSQAEGEALDGKIWFPSLMAAQVAVAAWLSGKPVSLGLSLKEYYAFAPKTPKIIIQHKTALSKNNEIEAMRTFILIEAGAYSPLIKIMISQMLAAANADYFIPAYTIEAIAVKSNDGMTDIFNGWGGAYVNNALEKHINEICSQLNVMPDEWRLKNMQHAAVKQYQNAKASAASVFSDLLKTVCQNSDFYRKYNVYNFLNSKREKRDPHAWRGTGIAIGFQYNGVQAIIDEGFTYAVEITLDTNSKIYVKTDTISETMQKILKKDIAKKLSVEENTIVFEEKEASAASLMTASAEIIIIPDLIDKCVKTIQGQRFRKPLPITVQKRYRKPRRAKTKDQAKDESFLSKTPAACAIELEMDPVCQDIQVKGVWLACMPGALYSKRAALTEIHKNIITALSKVNSEIIRKKTGVMQNNSIINAKDIPPIHIYLLESQSKPLGTNMIAEGIIHAAYLSALSQVLINTENHLIIAPSLTSNADNNEPLEETENEN
>NZ_CP042818.1|WP_081718756.1|3156643_3157147_+|hypothetical-protein
MLTTTSRWRKRKMRINFKLNGTEIQMDANPHERLSDVLRREFNILSVKESYPYGENGSSTIILDGKAVPACMVPIFLAANTEIITLEYFQTQNEYKEIINAFKQAGVSLCGYCNTGKILTIYTLLQQNAYPSEEEIKDALSGIVCRCTCMDDIISAVKRIKPQRKKR
>NZ_CP042818.1|WP_002700668.1|3157143_3157986_+|FAD-binding-domain-in-molybdopterin-dehydrogenase
MKNMDKTSTIYLPRTMAELQSIIKNISNIHAIGGGTEFLRKQYRKNLYFPERIAVLKNIPELKSISKTERTIDFGAAASLQSIVDLGEKNIPQALYEALIYCANPAIRNLATIGGNIAKLRPQSSTLAVLASLDAKIEIRTAAETLWLPIIRFADPKFTDLRSKNHIITKIRISSEPWDYVFYKRIGGTVISKNSASFIFLVRLQKNIIYEMRLIFSNNKFIKNKEFNNLFIGRTVPISERDITVLIEKCTEFFPENTFQNNYLKNCFFNLIEDCLYKLI

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Crispr_ID: NZ_CP042818_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042818_18

3234252-3234362

Orphan

Consensus_repeat	Method
GTTCCAAACAGAAACGATGTTTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042818_18

>merge|NZ_CP042818|18|3234252-3234362|CRISPRCasFinder
GTTCCAAACAGAAACGATGTTTTAAAGCAAAGTAATTTGCAAAGCTTTAAAACTTGTGAGTTAGTTTTAGCCACGGACGGCGGTGGTTCCAAGCAGAAACGATGTTTTAAA

>NZ_CP042818|18|17|3234252-3234362|CRISPRCasFinder
GTTCCAAACAGAAACGATGTTTTAAA	GCAAAGTAATTTGCAAAGCTTTAAAACTTGTGAGTTAGTTTTAGCCACGGACGGCGGTG
GTTCCAAGCAGAAACGATGTTTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042818.1\|WP_044635054.1\|3231507_3233961_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP042818.1\|WP_024752709.1\|3237812_3238565_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP042818.1\|WP_002694975.1\|3225533_3225791_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_039943645.1\|3246590_3247313_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752710.1\|3234521_3235760_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376358
NZ_CP042818.1\|WP_024752714.1\|3223842_3225498_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_148879313.1\|3221405_3223673_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP042818.1\|WP_044635053.1\|3236469_3237732_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176200
NZ_CP042818.1\|WP_148879309.1\|3235975_3236155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_052335727.1\|3247330_3248518_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP042818.1\|WP_044635060.1\|3217186_3217855_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP042818.1\|WP_148889765.1\|3238623_3240459_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NZ_CP042818.1\|WP_044635056.1\|3226081_3228910_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP042818.1\|WP_044635058.1\|3219912_3220470_+\|hemerythrin	unknown	unknown	gnl\|CDD\|226454
NZ_CP042818.1\|WP_148889763.1\|3218014_3219856_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP042818.1\|WP_148889764.1\|3229783_3231052_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179486
NZ_CP042818.1\|WP_024752707.1\|3242790_3244623_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP042818.1\|WP_044635052.1\|3241264_3242440_+\|RNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
NZ_CP042818.1\|WP_148884633.1\|3248843_3249404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042818.1\|WP_024752720.1\|3215991_3216363_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236123

Protein	Function_ID	Function_description	E-value
NZ_CP042818.1\|WP_044635054.1\|3231507_3233961_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP042818.1\|WP_024752707.1\|3242790_3244623_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP042818.1\|WP_024752709.1\|3237812_3238565_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.35301e-68
NZ_CP042818.1\|WP_024752710.1\|3234521_3235760_-\|hypothetical-protein	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	8.05127e-51
NZ_CP042818.1\|WP_148889764.1\|3229783_3231052_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179486	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP042818.1\|WP_148879313.1\|3221405_3223673_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	3.38824e-90
NZ_CP042818.1\|WP_044635053.1\|3236469_3237732_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176200	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_CP042818.1\|WP_052335727.1\|3247330_3248518_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.24757e-44
NZ_CP042818.1\|WP_044635060.1\|3217186_3217855_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.40149e-15
NZ_CP042818.1\|WP_148889765.1\|3238623_3240459_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NZ_CP042818.1\|WP_044635056.1\|3226081_3228910_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP042818.1\|WP_044635058.1\|3219912_3220470_+\|hemerythrin	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	4.41722e-38
NZ_CP042818.1\|WP_148889763.1\|3218014_3219856_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP042818.1\|WP_044635052.1\|3241264_3242440_+\|RNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	3.30498e-73
NZ_CP042818.1\|WP_024752720.1\|3215991_3216363_+\|hypothetical-protein	gnl\|CDD\|236123	PRK07883, PRK07883, DEDD exonuclease domain-containing protein.	8.74894e-05

>NZ_CP042818.1|WP_044635054.1|3231507_3233961_+|glycogen/starch/alpha-glucan-phosphorylase
MNLTKEELQNSVIRKLKRNFSKDISQASQRELYDALASTIAEQLQTNWMATRKLHAKEKIRQMYYFSAEFLMGRALSNNLINSGLKQIVVDLLNELPFGEYTDIEEEEPDAGLGNGGLGRLAACFLDSLATLDYPGHGYGIRYRYGMFEQRIENGEQVEYPDKWLAFRDPWEVRHAELAVKVYFGGQSVCRQGDDGRLYYSLEGAEEIIATPYDMPIVGYNTKTINTLRLWEASSRDGFDLQLFNNMEYAAAVAKENAAEDISRVLYPNDSGPSGKTLRLKQQYFFSSASLQDILRSFVHKHGNDFSKFPEYTVIQLNDTHPVVAIPELMRLLIDEYYLDWDVAWEIVTKTFAYTNHTILSEALEKWPIEIFQTLLPRVYQIVEEINRRFLTLLREKYQGNWQKQNEMSIIGGGKIRMAWLAIVGSFSVNGVAALHTEILKTKELADWYNLYPEKFNNKTNGVTQRRWLLSANPSLAEFITKHIGTDWILNLSELKKLEPLADNEDALKELIAIKHSNKKRLADYLKKTQSIVISPDSIFDVQIKRLHEYKRQLLNILYVMTEYNKIIENPNYEPFPKTIIFGAKAASGYRRAKMIIKLINTVADRVNNDHRVKGRLQVVFVENYRVSAAEKIFPAADVSEQISTAGKEASGTGNMKFMMNGAITLGTMDGANIEIVEEAGAHNAFIFGLTSEQIAEINQKNHYSPHEYLNKNPALAKAVNQLIDGTYTAPHENTFRELHDSLLYGVEGQRPDVYYVLADFDSYAKAHKDIEEVYRDPIKWARMCMLNIARSGKFSSDRTIEDYVQDIWKLKKIHID
>NZ_CP042818.1|WP_148889764.1|3229783_3231052_+|glucose-1-phosphate-adenylyltransferase
MSKVLSIILGGGKGTRLYPLTKERSKPAVPFGGKHRIVDIPISNCINSGFRNIYLLTQFNSASLHLHIAKAYIFDSFSNGFVEILAAEQTFDHSGWYEGTADAVRKNFTHFKTQKPSHYLILSGDQLYRMNLKDFLQKHEESGSDIAIACTPVNRSDASGFGIMQIDKNSRITSFMEKPGATKNIDEWKIPENSKLGSFGEKEYLASMGIYIFNTEAMEGSLANNMTDFGKEIIPMAIQKYKVSAYVHTGYWEDIGTIRSFYEATLDLTEIKPQFDFYDAVMPIYTHNRNLPPSKINAATLDNATCSEGCVITSATIKHSVIGIRSIIGSDSILEGVVCMGADYYETEAEKEEKRKKGTPCIGIGSNCRIKKAIIDKNACIGNNVSIGMGEVPPDGDYDYYHIVDRIYVITKNAIIPDGTII
>NZ_CP042818.1|WP_044635056.1|3226081_3228910_-|DNA-polymerase-I
MKDDVVFILDAYGLIYRSYFAFVGKPLTNSTGKNISAVFGFFKSLYTILRDYEPQFFAVAMDSRVPTFRHEMYSEYKATRDKTPEDLHAQIPIIEEILTALGITLVRKDGFEADDVIASIAKCASADNKKAVIISSDKDLMQLIDDKITMLKPNKADAWIAFNADDVKEQWGVPPNQMLDFLSLIGDTADNVPGVKSIGPKTAAKLLDEYGSLDGIYAHTNSLKGAMQKKIIEGKENAYFSKKLIALEDSALEKCVLSDFACPVLDYAAAAKIFLREELPSLARQYAPNADFVKTDEAFLVRSADPKKEKKQGANSAGANPITTSPLQEIASASGGFKKNAGNYRGITEPEELRKLIDAAIAQGFAAFDCETTGLNPLEAELAGFSLALKAEEAFYIPVKLLPAELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQTIAYKDVVPKGKIFSDVPYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFLKKEELAEFSEELGKEIIVHEREIFDIVGHEFNIASPKQLQEVLFTELKLPTGKKTKTGYSTDTSVLEVLASEHVIPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAGLIFGVPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQEMESVVKLLVPLRVNIESGKTWGDFH
>NZ_CP042818.1|WP_002694975.1|3225533_3225791_-|hypothetical-protein
MGTPSLFQILKNVLFSPEVLFVTVIIILYLNLVFYVVYYRKTHSKINRRIHKMRMAAKNTKQTAQVEEKEETETEPPKKRAATVR
>NZ_CP042818.1|WP_024752714.1|3223842_3225498_+|hypothetical-protein
MSVIKFSIKNKKLCISMDTGMSSRSFAQSRQKDCFSEKGFILRDARVIPFQFEKTELGIRNGKESVFLTAELSLPELEYEESVNVQTLYANILQHLYEKNTDNLISKSDIQAVQNVLEIFSRILFAKEEISELFLTELAAAGTQSIAFLKETIILLPPITTKNCLMAQPKAEKLDYLSAVHPFAEKVLLKESFGFLIAGTLYYLLCGNSAYGKGIKNENTLSENMLDSFFDPPNTLIQNISQNDSDLLSFFLKVKKNKKEKENLVAFFGRLFSLPERLEKNQENLLQDREAFYLQRERILQQQQKSIQKKRFLRKHRTKLTVGFFAFLTLSLIFASIIYKQNSAPDTKGLTSLQVVEGFYTAVAELNQEISSAYATRNGGGKYESLMMNLYVIKKTREGYEQRKIYFTPQELAVLCDKIKEKQPSASFEEFCHAVKKIMQLGSVYGITDLKITVKEENPSQTVFDVLFFYWLPTPSDAQSKLSAEDPFSPKLEEFGFPVQVYHKHDTVCLQLYKDRWLISSIDSQERLVAEDGKNILKAFFKESEKADYLP
>NZ_CP042818.1|WP_148879313.1|3221405_3223673_+|glycoside-hydrolase-family-2-protein
MSRTIIPLWNNWLFKKDFNNSDIRKDIATDDFTPVGIPHMVQEIPYNYFDERNYQCISCYRREFAVDESMRGSRVFIDFEGVMAAATVYINEKKVGTHKGGYTPFSFDITDYVLYSKSGAADNLLVVEVDSTERADIPPFGFAIDYLTYGGIYREVCLRFVPEVYIKDVFFQPLDSDKLEKKLLANIEFENTGAENKDITYSLVLKDMQDTIIAAVTNSCIAAAGTSFQRAVLTDLQDIQVWDIENPQLYRAELCIVSDTSRDEDIISATVGFRTAEFTPEGFFLNGKQIKIRGLNRHQAYPYVGYAMPKRAQQDDADILKHELGINLVRTSHYPQSKHFLNRCDEIGLLVFEEIPGWQHIGDEAWQDVACKNVEEMILRDRNHASIVLWGVRINESPDSHNFYLRTNEIARRLDPTRQTAGVRCHANSDFLEDVYTMNDFICGSVQPDTLRDRALRPQREITGQADLVPYMVTEFAGHMYPTKRFDQEERLVEHATKHLMVQNTAALNPHICGAIGWCAFDYNTHYNFGSGDRICYHGVMDMFRIPKFAAAVYASQMPPSKKAILEPLTRYTIGERSIGGIAPLMICTNCDSVRVVIGEQDLGLFYPSKERFAGLEHPPIIISQIEGVWGGGWLDAAFIGYVNEKEVAIKRFACNPTAVDLAVHSDHTELSAYEPDTTRITVKLTDRFGNELSFSDAIIKVQLEGPAEIIGPKEFALIGGVRAFWIKTKFESGTVTVNVASEGFKTKQITIQVT
>NZ_CP042818.1|WP_044635058.1|3219912_3220470_+|hemerythrin
MDSIELMIKEHENILKFISVIRKACCRILEGAPVPVEDFTAMISFARTYADTHHHGKEEEILFHNMIEHIGQPATGLIQHGMLVEHDMGRFFISRLEEALTRYAADPNTENKLDIIMYSAGWADLLTRHIEKENKVAYVFARRELPPEVLHNIDKKVQVFEQEAAHRNVQEKSLQLLKDLTAKYC
>NZ_CP042818.1|WP_148889763.1|3218014_3219856_+|hydroxylamine-reductase
MENKMFCFQCQETAGGKGCTLSGVCGKKPDTAAMQDLLMYVTKGLSVVTTQLRAERKTVAADVNHTVTQNLFITITNANFDNEAIITQIQSTLKLKEALLSQIEKKESLPEAALWNEDVSAFAKKAVDVGVLHTKNEDIRSLRELITYGLKGLSAYSKHANALLHDNDEVDAFIQQALTKTLDDSLTVEDLVALTLETGKYGVEGMALLDKANTSTYGNPEMTKVNIGVGKNPGILISGHDLRDMEMLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQKEEFESFNGPILMTTNCIVPPKESYKDRLYTTGAAGYPGCKHIAGDIGEEKDFSPLIEQSKRCSPPTEIESGEIIGGFAHHQVFALADKIVDAVKSGAIKKFIVMGGCDGRAKARNYYTEFAKALPKDTVILTAGCAKYKYNKLDLGDIGGIPRVLDAGQCNDSYSLAIIALKLKEVFGLDDINKLPIIYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVENFGIAGIGTVEDDMQLFFGNDEAKPAISADMLIGSIVRKFPEAVPVLIAQGMHCLGCPSAQTETLANACLVHGLESESVVKALNKSLH
>NZ_CP042818.1|WP_044635060.1|3217186_3217855_-|Crp/Fnr-family-transcriptional-regulator
MDFFMLSNTILFRGITPEEIKNVLLCLGGKQKHFTKEETVYRAGEQVSALGIVLSGSVIIENNDVWGNKTVLDKLGIGKVFAETYACSEKETLMVDVVATEDTDILFLQTKPLLTLCPQTCAYHTKVIRNLVSLLAQKNLHLSHRMFYVSSKSIRGRLLSYLSHQAAQNSSWEFTIPFNRQELADYLQVDRSALSNEISKMQKEGFFTVNKNQFSITLKEFF
>NZ_CP042818.1|WP_024752720.1|3215991_3216363_+|hypothetical-protein
MKFINYEDVKKLTRQDLIKEIKAKANKISEIKLGDFLFTDDGSFAPTHGVYLFLNENKEVLYVGKNSARSYIERIPAHFDVRFAAWMNSFFMDYIKAKNINITPNLIRNMYNSSEVQNQIKKM
>NZ_CP042818.1|WP_024752710.1|3234521_3235760_-|hypothetical-protein
MKEISAKEINESIRGLQSGNIAVNLQSIFIKTAENAFITVAPHSSEQEVTASDLQKLNSKQLQRTNNTVFRIFSHHADISAVIACSPKFCAVAASCYKRIPPVLDDMAQIVGVYAEVVELEDQNRILRLFKKNHALIIKNNADGIGAIAAGRDLAQAAAAALILEKSAQVFIEAQYLGGAKALHWFNAKRMNHGYRTKYSKMNTNVRHLSERDYSRKIAADELELRAKIVEMGKRLVRENLMQGTWGNISVRLNNHQMLVTPSGIDYFSLSPYDIVLVDLESLEHEGSLKPTSEKLIHADLLKKNKDINCIIHTHPLHCGAYIAAHKPLIVTAPEIKSILKGNVAIADYAASGTKKLAENILRAIKENSACFMANHGLVVCGSSLEDALKKCRTIEAYARSELDKLLHTGNA
>NZ_CP042818.1|WP_148879309.1|3235975_3236155_+|hypothetical-protein
MVNCSPLLNSKRCLKASTLFCKIEAFKLAGLVFATDVKTVFKHSCGKFAHRCAVSNSFL
>NZ_CP042818.1|WP_044635053.1|3236469_3237732_+|zinc-binding-dehydrogenase
MKVKAVRLHGANDLRLDEFELPEITDDEILVKVVSDSVCMSTYKCAILGTEHKRVHPNVADHPAIMGHEMAGDIVKVGKNHQGKFKPGMKFTLQPALNYKGTMWSPGYSYEFFGGNATYCIIPAEVMELGCLLEYKGKAYYEASLAEPMSCSIGAINACYHTKMGVYIHEMGIKENGKLAILAGAGPMGLGAITYLLHRDVRPSMLVVTDIDQERLDRATELFPPAEYMAKGIELHFINTGKMDDPAEELIKITGGTGFDDVLCYAPVEAVIELSSAVLGRDGCLNFFAGPTDNKFTARINFYDVHYNSTHVLGTTGGNTDDMIESLELTAANRINPAVMVTHIGGLDAAADTILNLPNIPGGKKLIYNHLNMPLIALTDLRKKGAEDERYIKLADIVDAHKGLWCLEAEQYLLENFIDE
>NZ_CP042818.1|WP_024752709.1|3237812_3238565_+|DeoR/GlpR-transcriptional-regulator
MEERRNKIITFVNEHGNITFNELKENFPHVSEMTLRTDLKVLDKEQRLVRIHGGARSLDKVVGNDDFLKKRFIQNTKAKKIIAKKALEFIESNTTIFLDSGSTTTMLAHILEDKPNIFVTSGLTCAIEIARLERAKVVLSGGNINRHSLSVNGIEGIRYIEKINFDIAFIGVTRYSKETSFTCESLEDAELKQTVIKKSRKVIVLMDSSKINQRGTYTICNHNEVDIVISDNELPEALKHEFRNRGIAVY
>NZ_CP042818.1|WP_148889765.1|3238623_3240459_+|PTS-mannitol-transporter-subunit-IICBA
MKATLQKFGKQLSAMVMPNIGAFIAWGFITALFIPDGWIPNEQLASIQPYMLAYLLPVLIAATGGKMVAGERGLVMGAIAVVGCIAGAGGVDGKPMLMAAMIVGPFAGWVIKQFDAFMENRMPVGFEMLINNFSIGIIGMLISFIGFYLIGPFMTGVLAVLTAGVNVLLKYSLLPFVAIFIEPAKVLFLNNAINHGMFTPIGVEQAAQTGKSIMYMLETNPGPGLGVLLAYWLFAKDKATKDSAPGAIIIHFFGGIHEIYFPYILMNPFIIIAPILGNLAAISFYLIFGAGLKGPASPGSIIAFLSMAPKGSTVIALLGVVIAAGISFLIASPIVKLTSTKDLEKAKKKVKTLKAQSKGEVDRIKKIVFACDAGMGSSAMGATKFKNRIKASRPDIIVTNTSVDNIPGDSDVVVVQAVLAERAQKSAPQAKLITIENFLADSALDDLFFELSTGDAMVSKNTENKKTETPALKDVITIDGILLNQKAKTKEEAIRAAGKLLHKLDYVEEAYIDSMLEREKIATTYMGMGLAIPHGTTHGTETIKKSGIVVLQYPDGVDFDGELAYFVIGIASIGGSHMDVLSKVCTALEDESVLEKMRNTNDKEWVLQQLS
>NZ_CP042818.1|WP_044635052.1|3241264_3242440_+|RNA-splicing-ligase-RtcB
MKNYKIFAESIEEEAKRQVEELSRQEFAKNSKIRIMPDVHAGKGCVIGTTMTIEDKICPNLVGVDIGCGISVFELGKIEPINFHKLDKVIRENIPSGSAIRKDERISKELKERLSTLTCANKINLEREYFSCGSLGGGNHFIEVNKDEIGNIYLAIHSGSRHLGTAVANYHQRKAIELLTSQNKAHKELIAKLKSERREKDIAAELVALPKQTHIPNELAFLSGEHTKNYLHDMTITQSFASENRKIIGEIILEKMNLEANDSWESIHNYVDIENKILRKGATPAYKGQKVIIPMNMRDGSLLCIGKGNAEWNFSAPHGAGRLMSRSAARSKLSFDTFKKEMSGVFSTSVSVCTLDEAPMAYKPMESILRQIKDTVHVTAIIKPLYNFKAP
>NZ_CP042818.1|WP_024752707.1|3242790_3244623_+|oligoendopeptidase-F
MKSTTPKRADIAKENQWKLELLFESEQAWQSALQEAIKSGERVLLYKDTFENPAEVESATLLNCLQAFETFEKQSEKLGQYAFLKKSEDEGNSENIARLSQYIMAMTEISAKLSWFVPALMQIPEDKVRAWIDPSGAEGKAFADYKIFIEKTLYLKVHTLSDREEKMLTLLSESGGTAQRSFSVLTNVDLQFGSITDRGEEKELTQSSFSQFLLSPDRAVREKAYKQFYAGFDAHKNTIASLYIGQVQQNTAMAKIRGYGSARENALYPDKVPVSVYDNLIKSVRDNLEPLHRFYALVQKTLKVEELRHYDVYVPLVAEIRKHTEYTEAVDIITEALQPLGGEYVNTIRSGLLGGWVDRYENQGKRSGAFSSGGFESEPYILMNYKPDVIRDVFTLAHEGGHSMHSWYSVRNNPFLCHDYTIFEAEVASTFNEELLFRSMVKKASDPKERAYLLSIRASDILATLYRQTMFAEFEMITHQLVESGTPLTLDRLRAEYKKLLTAYFGPAMHFEEVSDLECLRIPHFYRAFYVYKYATGISASLALAERVLSGGETERNDYFNFLKSGGSRYPIEALKVAGVDMASPEPVRAACNHFGEIVTELEKALKTIL
>NZ_CP042818.1|WP_039943645.1|3246590_3247313_+|hypothetical-protein
MSSKKEYADFPLDPHKKKMLAVNIKTLFRILTFTTLVFLIASLDMIFAVRAAKTKLLSAWMQEKNLMAASEELRQSSEDLTRLCRVFAANEARKYEDEYLAILNWRNGKTARPAKAANSLYAGKTISQYDVFKELGCTKDELALLTAATKLSDVLALRETQAMETIKQKKYVSGPAAIFDGERYDDFAVRILHDEEYHNQVTKIMQLIDEFCMLLADRTHAVISATNRMADTYLFLTVVL
>NZ_CP042818.1|WP_052335727.1|3247330_3248518_+|methyl-accepting-chemotaxis-protein
MIFFIWFLTTAVIHPILKSSDVFSYLGTGDLRKELEVKSNNEIGRMSGSFNTMLSNIKKLIFSIQKNANNLLNLGEELASNMTETAAAVHQISANIEGVKHQTMTQAASVTETAATIEEIVRIIRQLNKSIENQSASVAESSSSIEQMVMNIQEITKFIGHANETIEGLNTATAEGKESVSVANTISQKITEESGSLLDASSVIQHIASQTNLLAMNAAIEAAHAGDSGKGFAVVADEIRKLAEESNSQGKAITATLKTLSSEIETLANSAKNSEEKFNTIFELSERVQEISNNLISKMQEQEIGSREVLKAIQDINGVTVEVKNGSTEMLLGGESVAQEMQKLDSLTRIISDSMNEMASGAVQIDKAVREVNEITQKNKQSIADLTTEVEKFKV
>NZ_CP042818.1|WP_148884633.1|3248843_3249404_+|hypothetical-protein
MVRASGKKRQDDLDFCFISLWISFNAIYADDLNEIGDRSAVTGFLKKLSDLDTDKLLYALVWDTFFDNIRILLNNQYSFQPFWDEYNKPKTTTANSWEERFESEKKKVTKAMGTQNTAHLLTIVFRRLYTLRNQIIHGGATYNSSTNQSQKKEACRFLLTIIPAIINIIMDNYNEDWGIPYYPVVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	5939-5956	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	161250-161267	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	196561-196578	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	243336-243353	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	412338-412355	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	746373-746390	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	983524-983541	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1329708-1329725	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1508990-1509007	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1588600-1588617	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1794520-1794537	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2910883-2910900	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3183460-3183477	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3323797-3323814	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	142198-142215	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	180539-180556	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1032557-1032574	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1346314-1346331	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	1492358-1492375	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2014627-2014644	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2205642-2205659	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2271985-2272002	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2635315-2635332	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2804336-2804353	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	2823658-2823675	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3021036-3021053	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3050884-3050901	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3112555-3112572	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	3137484-3137501	0	1.0
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	1219688-1219743	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	820068-820122	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2214977-2215031	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2401589-2401643	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2542813-2542867	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2871032-2871086	0	1.0
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2947983-2948037	0	1.0
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	1219688-1219743	0	1.0
NZ_CP042818_17	17.3\|3147587\|51\|NZ_CP042818\|PILER-CR	3147587-3147637	51	NZ_CP042818.1	255380-255430	0	1.0
NZ_CP042818_5	5.1\|1346355\|18\|NZ_CP042818\|CRISPRCasFinder	1346355-1346372	18	NZ_CP042818.1	231330-231347	1	0.944
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	2956102-2956157	1	0.982
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	396896-396951	1	0.982
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	1088325-1088380	1	0.982
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	1219584-1219639	1	0.982
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	1303443-1303498	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	518303-518357	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1110720-1110774	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1654166-1654220	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1825259-1825313	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2198981-2199035	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2314802-2314856	1	0.982
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	3285812-3285866	1	0.982
NZ_CP042818_12	12.1\|2479991\|44\|NZ_CP042818\|CRISPRCasFinder	2479991-2480034	44	NZ_CP042818.1	2882180-2882223	1	0.977
NZ_CP042818_12	12.1\|2479991\|44\|NZ_CP042818\|CRISPRCasFinder	2479991-2480034	44	NZ_CP042818.1	2882470-2882513	1	0.977
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	2956102-2956157	1	0.982
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	396896-396951	1	0.982
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	1088325-1088380	1	0.982
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	1219584-1219639	1	0.982
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	1303443-1303498	1	0.982
NZ_CP042818_17	17.4\|3147698\|51\|NZ_CP042818\|PILER-CR	3147698-3147748	51	NZ_CP042818.1	255380-255430	1	0.98
NZ_CP042818_4	4.1\|1162854\|40\|NZ_CP042818\|CRISPRCasFinder	1162854-1162893	40	NZ_CP042818.1	1166524-1166563	2	0.95
NZ_CP042818_4	4.1\|1162854\|40\|NZ_CP042818\|CRISPRCasFinder	1162854-1162893	40	NZ_CP042818.1	1844015-1844054	2	0.95
NZ_CP042818_4	4.1\|1162854\|40\|NZ_CP042818\|CRISPRCasFinder	1162854-1162893	40	NZ_CP042818.1	2651312-2651351	2	0.95
NZ_CP042818_6	6.1\|1840345\|40\|NZ_CP042818\|CRISPRCasFinder	1840345-1840384	40	NZ_CP042818.1	1166524-1166563	2	0.95
NZ_CP042818_6	6.1\|1840345\|40\|NZ_CP042818\|CRISPRCasFinder	1840345-1840384	40	NZ_CP042818.1	1844015-1844054	2	0.95
NZ_CP042818_6	6.1\|1840345\|40\|NZ_CP042818\|CRISPRCasFinder	1840345-1840384	40	NZ_CP042818.1	2651312-2651351	2	0.95
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	574522-574577	2	0.964
NZ_CP042818_7	7.1\|1896912\|56\|NZ_CP042818\|CRISPRCasFinder	1896912-1896967	56	NZ_CP042818.1	1348253-1348308	2	0.964
NZ_CP042818_9	9.1\|2325306\|41\|NZ_CP042818\|CRISPRCasFinder	2325306-2325346	41	NZ_CP042818.1	1966813-1966853	2	0.951
NZ_CP042818_9	9.1\|2325306\|41\|NZ_CP042818\|CRISPRCasFinder	2325306-2325346	41	NZ_CP042818.1	2625452-2625492	2	0.951
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	866405-866459	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1158565-1158619	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1326496-1326550	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1378483-1378537	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	1820629-1820683	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2198190-2198244	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2198388-2198442	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2198586-2198640	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2198784-2198838	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	2704989-2705043	2	0.964
NZ_CP042818_10	10.1\|2400984\|55\|NZ_CP042818\|CRISPRCasFinder	2400984-2401038	55	NZ_CP042818.1	3198344-3198398	2	0.964
NZ_CP042818_12	12.1\|2479991\|44\|NZ_CP042818\|CRISPRCasFinder	2479991-2480034	44	NZ_CP042818.1	1491924-1491967	2	0.955
NZ_CP042818_14	14.1\|2647837\|40\|NZ_CP042818\|CRISPRCasFinder	2647837-2647876	40	NZ_CP042818.1	1166524-1166563	2	0.95
NZ_CP042818_14	14.1\|2647837\|40\|NZ_CP042818\|CRISPRCasFinder	2647837-2647876	40	NZ_CP042818.1	1844015-1844054	2	0.95
NZ_CP042818_14	14.1\|2647837\|40\|NZ_CP042818\|CRISPRCasFinder	2647837-2647876	40	NZ_CP042818.1	2651312-2651351	2	0.95
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	574522-574577	2	0.964
NZ_CP042818_15	15.1\|2698836\|56\|NZ_CP042818\|CRISPRCasFinder	2698836-2698891	56	NZ_CP042818.1	1348253-1348308	2	0.964
NZ_CP042818_17	17.3\|3147587\|51\|NZ_CP042818\|PILER-CR	3147587-3147637	51	NZ_CP042818.1	1649639-1649689	2	0.961
NZ_CP042818_17	17.1\|3147566\|63\|NZ_CP042818\|PILER-CR	3147566-3147628	63	NZ_CP042818.1	255389-255451	3	0.952
NZ_CP042818_17	17.2\|3147677\|63\|NZ_CP042818\|PILER-CR	3147677-3147739	63	NZ_CP042818.1	255389-255451	4	0.937

1. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 5939-5956, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

2. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 161250-161267, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

3. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 196561-196578, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

4. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 243336-243353, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

5. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 412338-412355, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

6. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 746373-746390, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

7. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 983524-983541, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

8. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1329708-1329725, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

9. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1508990-1509007, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

10. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1588600-1588617, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

11. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1794520-1794537, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

12. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2910883-2910900, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

13. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3183460-3183477, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

14. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3323797-3323814, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

15. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 142198-142215, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

16. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 180539-180556, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

17. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1032557-1032574, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

18. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1346314-1346331, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

19. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 1492358-1492375, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

20. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2014627-2014644, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

21. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2205642-2205659, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

22. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2271985-2272002, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

23. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2635315-2635332, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

24. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2804336-2804353, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

25. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 2823658-2823675, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

26. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3021036-3021053, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

27. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3050884-3050901, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

28. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3112555-3112572, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

29. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 3137484-3137501, mismatch: 0, identity: 1.0

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatctgtgata	Protospacer
******************

30. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 1219688-1219743, mismatch: 0, identity: 1.0

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
********************************************************

31. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 820068-820122, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

32. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2214977-2215031, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

33. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2401589-2401643, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

34. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2542813-2542867, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

35. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2871032-2871086, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

36. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2947983-2948037, mismatch: 0, identity: 1.0

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	Protospacer
*******************************************************

37. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 1219688-1219743, mismatch: 0, identity: 1.0

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
********************************************************

38. spacer 17.3|3147587|51|NZ_CP042818|PILER-CR matches to position: 255380-255430, mismatch: 0, identity: 1.0

gcccgttctgagttttgccgtccgtggcaaaaccaaaccttgcgagtttta	CRISPR spacer
gcccgttctgagttttgccgtccgtggcaaaaccaaaccttgcgagtttta	Protospacer
***************************************************

39. spacer 5.1|1346355|18|NZ_CP042818|CRISPRCasFinder matches to position: 231330-231347, mismatch: 1, identity: 0.944

tgtctttaatctgtgata	CRISPR spacer
tgtctttaatcagtgata	Protospacer
*********** ******

40. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 2956102-2956157, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

41. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 396896-396951, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

42. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 1088325-1088380, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

43. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 1219584-1219639, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttataaaacagtgttgatgcttttaaacatcatttagaattga	Protospacer
********************************************.***********

44. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 1303443-1303498, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

45. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 518303-518357, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

46. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1110720-1110774, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

47. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1654166-1654220, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

48. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1825259-1825313, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtagcggtggttccacgcaga	Protospacer
************************************.******************

49. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2198981-2199035, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaagcaga	Protospacer
************************************************* *****

50. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2314802-2314856, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

51. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 3285812-3285866, mismatch: 1, identity: 0.982

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccacgcaga	Protospacer
******************************* ***********************

52. spacer 12.1|2479991|44|NZ_CP042818|CRISPRCasFinder matches to position: 2882180-2882223, mismatch: 1, identity: 0.977

cagaaccgccacggatggcggtggttccaagcagacggtttagt	CRISPR spacer
cagaaccgccacggacggcggtggttccaagcagacggtttagt	Protospacer
***************.****************************

53. spacer 12.1|2479991|44|NZ_CP042818|CRISPRCasFinder matches to position: 2882470-2882513, mismatch: 1, identity: 0.977

cagaaccgccacggatggcggtggttccaagcagacggtttagt	CRISPR spacer
cagaaccgccacggacggcggtggttccaagcagacggtttagt	Protospacer
***************.****************************

54. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 2956102-2956157, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

55. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 396896-396951, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

56. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 1088325-1088380, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

57. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 1219584-1219639, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttataaaacagtgttgatgcttttaaacatcatttagaattga	Protospacer
********************************************.***********

58. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 1303443-1303498, mismatch: 1, identity: 0.982

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
****************.***************************************

59. spacer 17.4|3147698|51|NZ_CP042818|PILER-CR matches to position: 255380-255430, mismatch: 1, identity: 0.98

gcccgttctgagttttgccgtccttggcaaaaccaaaccttgcgagtttta	CRISPR spacer
gcccgttctgagttttgccgtccgtggcaaaaccaaaccttgcgagtttta	Protospacer
*********************** ***************************

60. spacer 4.1|1162854|40|NZ_CP042818|CRISPRCasFinder matches to position: 1166524-1166563, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

61. spacer 4.1|1162854|40|NZ_CP042818|CRISPRCasFinder matches to position: 1844015-1844054, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

62. spacer 4.1|1162854|40|NZ_CP042818|CRISPRCasFinder matches to position: 2651312-2651351, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

63. spacer 6.1|1840345|40|NZ_CP042818|CRISPRCasFinder matches to position: 1166524-1166563, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

64. spacer 6.1|1840345|40|NZ_CP042818|CRISPRCasFinder matches to position: 1844015-1844054, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

65. spacer 6.1|1840345|40|NZ_CP042818|CRISPRCasFinder matches to position: 2651312-2651351, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

66. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 574522-574577, mismatch: 2, identity: 0.964

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttgcaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
***************..***************************************

67. spacer 7.1|1896912|56|NZ_CP042818|CRISPRCasFinder matches to position: 1348253-1348308, mismatch: 2, identity: 0.964

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttggaattga	Protospacer
****************.*******************************.*******

68. spacer 9.1|2325306|41|NZ_CP042818|CRISPRCasFinder matches to position: 1966813-1966853, mismatch: 2, identity: 0.951

gttctgagttttgccgtccgtggcaaaaccaaaccgtctgc	CRISPR spacer
gttctgagttttgccgtccgtgccaaaaccaaaccatctgc	Protospacer
********************** ************.*****

69. spacer 9.1|2325306|41|NZ_CP042818|CRISPRCasFinder matches to position: 2625452-2625492, mismatch: 2, identity: 0.951

gttctgagttttgccgtccgtggcaaaaccaaaccgtctgc	CRISPR spacer
gttctgtgttttgccgtccatggcaaaaccaaaccgtctgc	Protospacer
****** ************.*********************

70. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 866405-866459, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaagactaaaaatcaggacgtggcggtggttccacgcaga	Protospacer
****************** *************.**********************

71. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1158565-1158619, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

72. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1326496-1326550, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagtgcgtggcggtggttccaagcaga	Protospacer
******************************* ***************** *****

73. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1378483-1378537, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

74. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 1820629-1820683, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cattgatttaatcaagaatactaaaaatcagggcgtggcggtggttccatgcaga	Protospacer
**.**********************************************.*****

75. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2198190-2198244, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

76. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2198388-2198442, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

77. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2198586-2198640, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

78. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2198784-2198838, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccaaacaga	Protospacer
************************************************* .****

79. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 2704989-2705043, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaaggatactaaaaatcagggcgtggcggtggttccaagcaga	Protospacer
****************.******************************** *****

80. spacer 10.1|2400984|55|NZ_CP042818|CRISPRCasFinder matches to position: 3198344-3198398, mismatch: 2, identity: 0.964

cactgatttaatcaagaatactaaaaatcagggcgtggcggtggttccacgcaga	CRISPR spacer
cactgatttaatcaagaacactaaaaatcagggcgtggcggtggttccaagcaga	Protospacer
******************.****************************** *****

81. spacer 12.1|2479991|44|NZ_CP042818|CRISPRCasFinder matches to position: 1491924-1491967, mismatch: 2, identity: 0.955

cagaaccgccacggatggcggtggttccaagcagacggtttagt	CRISPR spacer
cagaacgggcacggatggcggtggttccaagcagacggtttagt	Protospacer
****** * ***********************************

82. spacer 14.1|2647837|40|NZ_CP042818|CRISPRCasFinder matches to position: 1166524-1166563, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

83. spacer 14.1|2647837|40|NZ_CP042818|CRISPRCasFinder matches to position: 1844015-1844054, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

84. spacer 14.1|2647837|40|NZ_CP042818|CRISPRCasFinder matches to position: 2651312-2651351, mismatch: 2, identity: 0.95

gagctgtactgcaacaacaatcagctaaccacattgaacg	CRISPR spacer
gagttgtactgcaacaacaatcagctaaccacattaaacg	Protospacer
***.*******************************.****

85. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 574522-574577, mismatch: 2, identity: 0.964

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttgcaaaacagtgttgatgcttttaaacatcgtttagaattga	Protospacer
***************..***************************************

86. spacer 15.1|2698836|56|NZ_CP042818|CRISPRCasFinder matches to position: 1348253-1348308, mismatch: 2, identity: 0.964

aaaagcttcaattttataaaacagtgttgatgcttttaaacatcgtttagaattga	CRISPR spacer
aaaagcttcaattttacaaaacagtgttgatgcttttaaacatcgtttggaattga	Protospacer
****************.*******************************.*******

87. spacer 17.3|3147587|51|NZ_CP042818|PILER-CR matches to position: 1649639-1649689, mismatch: 2, identity: 0.961

gcccgttctgagttttgccgtccgtggcaaaaccaaaccttgcgagtttta	CRISPR spacer
gcccgttctgagttttgccgtccgtggcaaaacttaaccttgcgagtttta	Protospacer
*********************************. ****************

88. spacer 17.1|3147566|63|NZ_CP042818|PILER-CR matches to position: 255389-255451, mismatch: 3, identity: 0.952

tttggaaccacgggcgtccgtgcccgttctgagttttgccgtccgtggcaaaaccaaacc	CRISPR spacer
tttggaaccacgggcgtccgtgcccgttctgagttttgccgtccgtggcaaaaccaaacc	Protospacer
************************************************************

89. spacer 17.2|3147677|63|NZ_CP042818|PILER-CR matches to position: 255389-255451, mismatch: 4, identity: 0.937

tttggaaccacgggcgtccgtgcccgttctgagttttgccgtccttggcaaaaccaaacc	CRISPR spacer
tttggaaccacgggcgtccgtgcccgttctgagttttgccgtccgtggcaaaaccaaacc	Protospacer
******************************************** ***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

144657 : 195411

Bacillus_phage(25.0%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024752864.1\|144657_145128_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_082048225.1\|145318_146680_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	5.2e-18	27.9
WP_024752866.1\|146682_147453_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_024752867.1\|147434_148184_+	UDP-N-acetyl-D-mannosamine transferase	NA	NA	NA	NA
WP_024752868.1\|148950_150078_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_002700578.1\|150064_150787_-	rRNA methylase	NA	NA	NA	NA
WP_002700580.1\|151043_151589_+	anti-sigma factor antagonist	NA	NA	NA	NA
WP_148879331.1\|151710_151992_+	hypothetical protein	NA	NA	NA	NA
WP_148889193.1\|152206_153385_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002700584.1\|153570_154254_-	hypothetical protein	NA	NA	NA	NA
WP_002700590.1\|154831_155428_+	hypothetical protein	NA	NA	NA	NA
WP_002700592.1\|155473_156262_+	RNA polymerase sigma factor WhiG	I1ZBD5	Salisaeta_icosahedral_phage	9.8e-09	30.6
WP_024752872.1\|156272_158240_+	DUF342 domain-containing protein	NA	NA	NA	NA
WP_024752873.1\|158220_158562_+	hypothetical protein	NA	NA	NA	NA
WP_002700598.1\|158566_159160_+	hypothetical protein	NA	NA	NA	NA
WP_148878587.1\|159915_160428_-	hypothetical protein	NA	NA	NA	NA
WP_148889194.1\|160436_161162_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024752874.1\|161790_163989_-	AAA family ATPase	G3MBE0	Bacillus_virus	7.2e-102	46.6
WP_024752875.1\|163981_164989_-	hypothetical protein	NA	NA	NA	NA
WP_024752876.1\|165000_165678_-	hypothetical protein	NA	NA	NA	NA
WP_024752877.1\|165844_166726_+	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.1e-29	35.1
WP_081718764.1\|166698_167553_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_081718765.1\|167650_167920_+	hypothetical protein	NA	NA	NA	NA
WP_148879326.1\|168777_170385_-	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_148879327.1\|170515_171205_-	hypothetical protein	NA	NA	NA	NA
WP_024752881.1\|171215_171914_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_024752883.1\|173420_174542_+	hypothetical protein	NA	NA	NA	NA
WP_024752884.1\|174528_175302_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_044634710.1\|175322_175865_+	signal peptidase II	NA	NA	NA	NA
WP_024752886.1\|175854_176127_+	hypothetical protein	NA	NA	NA	NA
WP_024752887.1\|176581_178207_-	hypothetical protein	NA	NA	NA	NA
WP_024752888.1\|178617_179451_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_002700602.1\|179564_179789_+	hypothetical protein	NA	NA	NA	NA
WP_024752889.1\|179849_180410_-	hypothetical protein	NA	NA	NA	NA
WP_148889195.1\|180643_181897_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_148879501.1\|181944_182820_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.8e-33	35.4
WP_024752891.1\|182804_183122_-\|transposase	transposase	NA	NA	NA	NA
WP_044634919.1\|183237_185346_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-05	41.2
WP_148889196.1\|185622_185829_-	hypothetical protein	NA	NA	NA	NA
WP_024752894.1\|186074_186899_-	A/G-specific adenine glycosylase	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	3.7e-19	35.9
WP_002696371.1\|186900_187470_-	AAA family ATPase	NA	NA	NA	NA
WP_002696373.1\|187529_188396_-	YicC family protein	NA	NA	NA	NA
WP_002696375.1\|188413_189853_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_148878733.1\|189880_190084_-	hypothetical protein	NA	NA	NA	NA
WP_024752895.1\|190659_192648_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_024752184.1\|192888_193170_+\|transposase	transposase	NA	NA	NA	NA
WP_148879937.1\|194233_195109_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.3e-33	35.4
WP_024752891.1\|195093_195411_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

461478 : 514147

Bacillus_phage(20.0%)

integrase,capsid,transposase,tRNA,head,tail

attL 478648:478678|attR 518077:518107

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024753006.1\|461478_462939_-\|tRNA	cysteine--tRNA ligase	A0A0U2SJ70	Niemeyer_virus	8.9e-40	27.9
WP_002695397.1\|463046_464009_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_024753007.1\|464069_465317_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_002695393.1\|465325_465919_+	hypothetical protein	NA	NA	NA	NA
WP_002695391.1\|465893_466349_+	DUF192 domain-containing protein	NA	NA	NA	NA
WP_002695389.1\|466596_467409_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_002695388.1\|467551_468682_+	chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	2.2e-06	34.9
WP_024753008.1\|469114_470407_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_148889782.1\|470998_471346_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	2.8e-08	42.2
WP_024753009.1\|471457_471739_-\|transposase	transposase	NA	NA	NA	NA
WP_024753010.1\|472269_475041_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_024753011.1\|475040_478457_+	UvrD-helicase domain-containing protein	A0A068EQC7	Bacillus_phage	1.2e-15	23.1
478648:478678	attL	NA	NA	NA	NA
WP_044634746.1\|480705_481524_-	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	7.5e-28	33.1
WP_024751798.1\|481632_482187_+	hypothetical protein	NA	NA	NA	NA
WP_148889215.1\|482190_483555_-	hypothetical protein	NA	NA	NA	NA
WP_148879403.1\|483583_485860_-	hypothetical protein	NA	NA	NA	NA
WP_148889216.1\|485977_486556_-	hypothetical protein	NA	NA	NA	NA
WP_148889217.1\|486584_487022_-	hypothetical protein	NA	NA	NA	NA
WP_148889218.1\|487047_490806_-\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	1.2e-27	32.5
WP_024751792.1\|491037_491424_-	hypothetical protein	NA	NA	NA	NA
WP_024752646.1\|492381_492831_-	hypothetical protein	NA	NA	NA	NA
WP_148878633.1\|492820_493435_-	phage morphogenesis protein	NA	NA	NA	NA
WP_024752645.1\|493431_493890_-	hypothetical protein	NA	NA	NA	NA
WP_148889219.1\|493951_494950_-\|capsid	major capsid protein E	NA	NA	NA	NA
WP_002695879.1\|495000_495348_-	hypothetical protein	NA	NA	NA	NA
WP_148878736.1\|496473_496812_+	DUF4325 domain-containing protein	NA	NA	NA	NA
WP_148878671.1\|496895_497099_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148879513.1\|497530_498151_-	hypothetical protein	NA	NA	NA	NA
WP_148878668.1\|499681_500122_+	hypothetical protein	NA	NA	NA	NA
WP_148889175.1\|500127_500574_+	hypothetical protein	NA	NA	NA	NA
WP_148889173.1\|500682_501270_-	hypothetical protein	NA	NA	NA	NA
WP_148878638.1\|501465_501807_+	transcriptional regulator	NA	NA	NA	NA
WP_148889220.1\|501803_503684_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_148889783.1\|503695_504631_+	AAA family ATPase	NA	NA	NA	NA
WP_148878641.1\|504632_505334_+	hypothetical protein	NA	NA	NA	NA
WP_002696308.1\|505338_505533_+	hypothetical protein	NA	NA	NA	NA
WP_024751779.1\|505574_506087_+	hypothetical protein	NA	NA	NA	NA
WP_024751675.1\|506166_506613_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.2e-08	32.8
WP_081718572.1\|506791_507016_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024751777.1\|507132_507687_+	N-acetylmuramoyl-L-alanine amidase	A0A0B5CTW5	Listeria_phage	1.4e-22	35.3
WP_024751776.1\|507710_508046_+	hypothetical protein	NA	NA	NA	NA
WP_024751775.1\|508029_508392_+	hypothetical protein	NA	NA	NA	NA
WP_024751681.1\|508345_508651_+	hypothetical protein	NA	NA	NA	NA
WP_148878661.1\|508655_509054_+	hypothetical protein	NA	NA	NA	NA
WP_024751680.1\|509080_509371_+	hypothetical protein	NA	NA	NA	NA
WP_002696333.1\|509386_509923_+	DUF3486 family protein	NA	NA	NA	NA
WP_002696334.1\|509919_511446_+	hypothetical protein	A0A0N7AEF1	Bacillus_phage	9.0e-51	29.1
WP_044634727.1\|511442_512693_+	DUF935 family protein	NA	NA	NA	NA
WP_148884650.1\|513079_514147_+\|head	phage head morphogenesis protein	A4JWJ6	Burkholderia_virus	5.7e-12	31.0
518077:518107	attR	NA	NA	NA	NA

DBSCAN-SWA_3

676245 : 746285

uncultured_Caudovirales_phage(60.0%)

integrase,transposase,protease

attL 676150:676209|attR 708066:709370

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
676150:676209	attL	NA	NA	NA	NA
WP_024752136.1\|676245_677439_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_148889233.1\|677730_679851_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-07	37.2
WP_044634793.1\|680357_680855_-	hypothetical protein	NA	NA	NA	NA
WP_024752142.1\|681284_682118_-	hypothetical protein	NA	NA	NA	NA
WP_148889234.1\|682111_682804_-	hypothetical protein	NA	NA	NA	NA
WP_024751687.1\|682848_683451_-	hypothetical protein	NA	NA	NA	NA
WP_024751688.1\|683435_684017_-	hypothetical protein	NA	NA	NA	NA
WP_002701562.1\|684276_685362_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_148889235.1\|685351_686578_-	restriction endonuclease subunit M	A0A1B0XVT8	Campylobacter_phage	7.8e-37	46.6
WP_148889236.1\|686705_688562_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-07	32.6
WP_024751683.1\|688782_690888_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-09	35.7
WP_024752139.1\|692152_693298_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_148889786.1\|693491_695135_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-07	32.6
WP_148889237.1\|695791_696949_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_148879216.1\|697268_697535_-	hypothetical protein	NA	NA	NA	NA
WP_148879241.1\|697651_698059_-	hypothetical protein	NA	NA	NA	NA
WP_148879224.1\|698598_698979_-	hypothetical protein	NA	NA	NA	NA
WP_148879216.1\|699239_699506_-	hypothetical protein	NA	NA	NA	NA
WP_148889238.1\|699622_700060_-	hypothetical protein	NA	NA	NA	NA
WP_148889240.1\|700304_701291_-	hypothetical protein	NA	NA	NA	NA
WP_024752137.1\|701439_702336_-	site-specific DNA-methyltransferase	A0A1D8KJW7	Synechococcus_phage	6.5e-41	44.3
WP_039943402.1\|702328_703195_-	hypothetical protein	NA	NA	NA	NA
WP_148879216.1\|703502_703769_-	hypothetical protein	NA	NA	NA	NA
WP_148879215.1\|703885_704323_-	hypothetical protein	NA	NA	NA	NA
WP_148879597.1\|704592_705858_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	6.1e-61	40.2
WP_148889787.1\|706145_707789_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.3e-07	32.6
WP_024752136.1\|708161_709355_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_148879214.1\|709355_710309_+	Fic family protein	NA	NA	NA	NA
708066:709370	attR	NA	NA	NA	NA
WP_044634957.1\|710528_711677_-	Fic family protein	D7RWK9	Brochothrix_phage	5.0e-38	31.8
WP_148884614.1\|712358_716510_+	TIGR02680 family protein	NA	NA	NA	NA
WP_024752157.1\|716732_718619_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.0e-105	35.6
WP_002699611.1\|718824_719043_-	hypothetical protein	NA	NA	NA	NA
WP_024752158.1\|719340_719706_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024752159.1\|720025_721315_+	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_024752160.1\|721626_722262_+	hypothetical protein	NA	NA	NA	NA
WP_024752161.1\|722258_725894_+	hypothetical protein	NA	NA	NA	NA
WP_148889243.1\|725979_726210_-	hypothetical protein	NA	NA	NA	NA
WP_081718667.1\|726128_726371_-	hypothetical protein	NA	NA	NA	NA
WP_024752162.1\|726431_727628_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_148889788.1\|727924_728143_+	hypothetical protein	NA	NA	NA	NA
WP_148879396.1\|728213_729518_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_148878573.1\|729826_730330_-	hypothetical protein	NA	NA	NA	NA
WP_148889244.1\|730370_732467_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.8e-07	50.0
WP_024752166.1\|734138_735920_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	9.0e-111	37.3
WP_039943445.1\|736033_736762_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_148878575.1\|737066_738143_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_148884247.1\|738261_738474_-	hypothetical protein	NA	NA	NA	NA
WP_148889246.1\|739081_741133_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-07	28.9
WP_081718719.1\|741994_743146_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-06	34.7
WP_024752171.1\|743286_744426_+	hypothetical protein	NA	NA	NA	NA
WP_024752172.1\|744427_744970_+	hypothetical protein	A0A2H4J162	uncultured_Caudovirales_phage	4.7e-10	39.1
WP_052335743.1\|745031_746285_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1172638 : 1183078

Campylobacter_phage(11.11%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148889350.1\|1172638_1173790_+	hypothetical protein	A0A1B0XVT8	Campylobacter_phage	7.3e-37	44.8
WP_148884120.1\|1173907_1174306_+	single-stranded DNA-binding protein	E5DV85	Deep-sea_thermophilic_phage	5.4e-16	40.6
WP_148883997.1\|1174318_1174765_+	hypothetical protein	NA	NA	NA	NA
WP_148884119.1\|1174862_1175039_+	HNH endonuclease	NA	NA	NA	NA
WP_148889351.1\|1175498_1175690_+	hypothetical protein	NA	NA	NA	NA
WP_148884482.1\|1175686_1176484_+	hypothetical protein	NA	NA	NA	NA
WP_148884117.1\|1176592_1178188_+	hypothetical protein	S5MBV8	Brevibacillus_phage	5.3e-70	35.6
WP_148884116.1\|1178220_1179993_+\|portal	phage portal protein	F8WPY2	Bacillus_phage	7.0e-39	29.6
WP_081718581.1\|1180006_1180336_+	hypothetical protein	D2ECI8	Treponema_phage	2.7e-05	64.9
WP_148889353.1\|1180430_1181252_+	hypothetical protein	A0A139ZPI9	Marinitoga_camini_virus	8.3e-35	39.8
WP_148889355.1\|1181248_1182127_+	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	1.4e-27	32.0
WP_024751735.1\|1182123_1182453_+	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	9.4e-14	41.5
WP_024751714.1\|1182449_1182731_+	hypothetical protein	NA	NA	NA	NA
WP_081718583.1\|1182814_1183078_+	DUF1064 domain-containing protein	B8Q5A6	Abalone_shriveling_syndrome-associated_virus	2.3e-07	46.3

DBSCAN-SWA_5

1577841 : 1657802

Bacillus_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018659278.1\|1577841_1578006_+\|transposase	transposase	NA	NA	NA	NA
WP_024753543.1\|1578080_1580012_+	type IV secretory system conjugative DNA transfer family protein	A0A2H4UU47	Bodo_saltans_virus	9.7e-10	23.7
WP_024753544.1\|1580094_1580280_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_024753545.1\|1581425_1582232_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_148878613.1\|1587258_1588512_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_008902116.1\|1591192_1591405_+	helix-turn-helix transcriptional regulator	A0A2I7SC34	Paenibacillus_phage	1.2e-09	48.3
WP_024753546.1\|1591407_1592730_+	site-specific DNA-methyltransferase	A0A2K5B255	Erysipelothrix_phage	9.0e-31	28.3
WP_024753547.1\|1592795_1593077_+	hypothetical protein	NA	NA	NA	NA
WP_024753548.1\|1593104_1593893_+	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_081718841.1\|1593946_1594807_+	hypothetical protein	NA	NA	NA	NA
WP_024753550.1\|1594845_1595835_+	hypothetical protein	NA	NA	NA	NA
WP_148889437.1\|1596210_1597278_+	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	1.1e-58	38.8
WP_148879739.1\|1601200_1602937_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.3e-33	31.1
WP_024753555.1\|1603607_1603769_+	hypothetical protein	NA	NA	NA	NA
WP_044635084.1\|1606504_1608934_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_000332204.1\|1608845_1609235_-	PrgI family protein	E4ZFJ8	Streptococcus_phage	3.4e-47	78.5
WP_002416376.1\|1609238_1609502_-	hypothetical protein	NA	NA	NA	NA
WP_024753559.1\|1609519_1610383_-	hypothetical protein	NA	NA	NA	NA
WP_024751818.1\|1611427_1612609_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_024753561.1\|1613823_1614234_-	hypothetical protein	NA	NA	NA	NA
WP_024753562.1\|1614305_1615526_-	MFS transporter	D0R099	Streptococcus_phage	1.3e-23	24.7
WP_024753563.1\|1615529_1616447_-	DUF1848 domain-containing protein	NA	NA	NA	NA
WP_024753564.1\|1616975_1617290_-	hypothetical protein	NA	NA	NA	NA
WP_024753565.1\|1617307_1617964_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_024753566.1\|1617973_1618768_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_044634501.1\|1619189_1619471_+\|transposase	transposase	NA	NA	NA	NA
WP_148878972.1\|1620790_1621081_-	DUF3847 domain-containing protein	NA	NA	NA	NA
WP_044634810.1\|1621467_1622736_-	MFS transporter	NA	NA	NA	NA
WP_148878971.1\|1622751_1623600_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_024751992.1\|1623976_1624993_-\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.0e-23	30.3
WP_148889439.1\|1625035_1625815_-	ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	2.6e-14	28.6
WP_148878969.1\|1625814_1626846_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_148889441.1\|1626835_1628578_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	2.1e-11	22.0
WP_148889443.1\|1628555_1630268_-	ATP-binding cassette domain-containing protein	A0A2H4UU96	Bodo_saltans_virus	9.2e-20	26.3
WP_148878966.1\|1630275_1632513_-	hypothetical protein	NA	NA	NA	NA
WP_024753570.1\|1633648_1633807_-	conjugal transfer protein	NA	NA	NA	NA
WP_024753571.1\|1634047_1634359_-	DUF3847 domain-containing protein	NA	NA	NA	NA
WP_148878965.1\|1634466_1635771_-	type II restriction endonuclease	NA	NA	NA	NA
WP_024753573.1\|1635763_1636618_-	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	6.7e-72	47.9
WP_002694906.1\|1636631_1636844_-	helix-turn-helix transcriptional regulator	S5MNP8	Brevibacillus_phage	1.2e-06	51.0
WP_024753574.1\|1637008_1637788_-	replication initiator protein A	NA	NA	NA	NA
WP_081718842.1\|1637894_1638293_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_081718843.1\|1638243_1638423_-	hypothetical protein	NA	NA	NA	NA
WP_024753575.1\|1638671_1639850_-	hypothetical protein	NA	NA	NA	NA
WP_009242836.1\|1639864_1640275_-	hypothetical protein	NA	NA	NA	NA
WP_148889445.1\|1640294_1642364_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_024753577.1\|1642938_1644180_+	peptidase T	NA	NA	NA	NA
WP_002694883.1\|1644353_1645640_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002694879.1\|1645936_1648066_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.2e-30	27.1
WP_024753580.1\|1648058_1648991_+	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	8.6e-12	44.3
WP_148889448.1\|1649582_1649837_+	hypothetical protein	NA	NA	NA	NA
WP_148889450.1\|1650212_1652012_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.8e-42	30.1
WP_148878902.1\|1652069_1653878_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	5.9e-17	27.8
WP_024753582.1\|1654442_1656962_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.5e-147	39.5
WP_024752184.1\|1657520_1657802_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1850135 : 1860565

Campylobacter_phage(11.11%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148889483.1\|1850135_1851356_+	restriction endonuclease subunit M	A0A1B0XVT8	Campylobacter_phage	7.7e-37	44.8
WP_148884120.1\|1851394_1851793_+	single-stranded DNA-binding protein	E5DV85	Deep-sea_thermophilic_phage	5.4e-16	40.6
WP_148883997.1\|1851805_1852252_+	hypothetical protein	NA	NA	NA	NA
WP_148884119.1\|1852349_1852526_+	HNH endonuclease	NA	NA	NA	NA
WP_044634232.1\|1852985_1853177_+	hypothetical protein	NA	NA	NA	NA
WP_148889485.1\|1853173_1853971_+	hypothetical protein	NA	NA	NA	NA
WP_148878755.1\|1854079_1855675_+	hypothetical protein	S5MBV8	Brevibacillus_phage	5.3e-70	35.6
WP_148889487.1\|1855707_1857480_+\|portal	phage portal protein	F8WPY2	Bacillus_phage	7.0e-39	29.6
WP_081718581.1\|1857493_1857823_+	hypothetical protein	D2ECI8	Treponema_phage	2.7e-05	64.9
WP_148889353.1\|1857917_1858739_+	hypothetical protein	A0A139ZPI9	Marinitoga_camini_virus	8.3e-35	39.8
WP_148889355.1\|1858735_1859614_+	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	1.4e-27	32.0
WP_024751735.1\|1859610_1859940_+	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	9.4e-14	41.5
WP_024751714.1\|1859936_1860218_+	hypothetical protein	NA	NA	NA	NA
WP_082048203.1\|1860301_1860565_+	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	4.0e-07	46.5

DBSCAN-SWA_7

1908692 : 1979441

Staphylococcus_phage(14.29%)

integrase,transposase,coat,tRNA,protease

attL 1903670:1903686|attR 1925022:1925038

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1903670:1903686	attL	NA	NA	NA	NA
WP_148889514.1\|1908692_1910120_+\|integrase	tyrosine-type recombinase/integrase	Q4ZB10	Staphylococcus_virus	8.0e-09	23.3
WP_024752411.1\|1910944_1911859_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	1.3e-12	33.3
WP_044634965.1\|1912068_1914285_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_024752409.1\|1914289_1915099_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_148889516.1\|1915482_1918068_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	3.8e-267	54.9
WP_148883945.1\|1918140_1918383_+	hypothetical protein	NA	NA	NA	NA
WP_148879048.1\|1918410_1919640_+\|coat	spore coat protein	NA	NA	NA	NA
WP_002700544.1\|1919670_1920090_+	J domain-containing protein	NA	NA	NA	NA
WP_024752405.1\|1920091_1922044_+	hypothetical protein	NA	NA	NA	NA
WP_002700547.1\|1922040_1923228_+	DNA polymerase IV	A0A290GHP0	Caldibacillus_phage	2.4e-11	25.8
WP_148889518.1\|1923402_1928952_+	hypothetical protein	NA	NA	NA	NA
1925022:1925038	attR	NA	NA	NA	NA
WP_148889520.1\|1928968_1931302_+	penicillin-binding protein 1C	NA	NA	NA	NA
WP_002700565.1\|1931768_1932533_+	ParA family protein	Q8JL10	Natrialba_phage	3.1e-20	26.9
WP_024752402.1\|1932516_1933428_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.5e-16	35.8
WP_002700570.1\|1933556_1933997_+	transcriptional repressor	NA	NA	NA	NA
WP_024752401.1\|1934603_1935656_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_148879425.1\|1936891_1937788_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_024752400.1\|1937784_1939080_+	lytic transglycosylase domain-containing protein	C1KFN7	Lactobacillus_virus	5.2e-07	31.2
WP_002695130.1\|1939168_1940482_+	OmpA family protein	NA	NA	NA	NA
WP_024752398.1\|1941333_1942104_+	ComF family protein	NA	NA	NA	NA
WP_044634961.1\|1942788_1943715_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_081718726.1\|1944784_1946461_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_024752395.1\|1946558_1948766_+	glycoside hydrolase family 95 protein	NA	NA	NA	NA
WP_148889522.1\|1949114_1950311_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_024752393.1\|1950986_1952315_-	ATP-binding protein	NA	NA	NA	NA
WP_024752392.1\|1952968_1953622_+	response regulator transcription factor	NA	NA	NA	NA
WP_044634654.1\|1953736_1954420_+	serine/threonine protein phosphatase	NA	NA	NA	NA
WP_148889524.1\|1954824_1955697_-	leucine-rich repeat protein	NA	NA	NA	NA
WP_024752389.1\|1956160_1957663_-	NADPH-dependent glutamate synthase	A0A249XZT7	Enterococcus_phage	7.1e-08	26.3
WP_002699093.1\|1957708_1958542_-	sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein	NA	NA	NA	NA
WP_002699091.1\|1958653_1959247_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.1e-31	38.9
WP_024752388.1\|1961038_1962472_+	amino acid permease	NA	NA	NA	NA
WP_002699081.1\|1963211_1964150_+	AEC family transporter	NA	NA	NA	NA
WP_081718624.1\|1964223_1964412_-	hypothetical protein	NA	NA	NA	NA
WP_002699078.1\|1964632_1965010_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_002699076.1\|1965022_1965889_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-18	30.1
WP_024751880.1\|1965890_1966586_+	hypothetical protein	NA	NA	NA	NA
WP_148878990.1\|1967050_1967377_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_024751882.1\|1967337_1967589_-	hypothetical protein	NA	NA	NA	NA
WP_148884561.1\|1967907_1968702_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.6e-43	36.1
WP_002698290.1\|1968698_1969985_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-90	45.9
WP_024751884.1\|1970003_1970585_-	hypothetical protein	NA	NA	NA	NA
WP_024751886.1\|1971460_1972210_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_148889526.1\|1972629_1973895_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_082048214.1\|1973846_1974500_-	DUF3160 domain-containing protein	NA	NA	NA	NA
WP_024751890.1\|1975364_1975748_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_024751891.1\|1975792_1976422_-	adenylate kinase	NA	NA	NA	NA
WP_081718631.1\|1977136_1977325_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_002698319.1\|1977339_1977576_+	acyl carrier protein	NA	NA	NA	NA
WP_024751892.1\|1977594_1978326_+	ribonuclease III	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	1.3e-23	30.3
WP_024751992.1\|1978424_1979441_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.0e-23	30.3

DBSCAN-SWA_8

2047191 : 2060514

Clostridium_phage(10.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148884524.1\|2047191_2048808_-	hypothetical protein	A0A0A8WIZ2	Clostridium_phage	2.4e-30	32.8
WP_002695934.1\|2048804_2049188_-	hypothetical protein	NA	NA	NA	NA
WP_148884068.1\|2049190_2050684_-	hypothetical protein	NA	NA	NA	NA
WP_148889563.1\|2050711_2052175_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	2.3e-51	32.7
WP_148879788.1\|2052152_2052755_-	hypothetical protein	NA	NA	NA	NA
WP_148879789.1\|2053256_2053781_-	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	3.9e-06	26.8
WP_082048203.1\|2053869_2054133_-	DUF1064 domain-containing protein	B0VK09	Azospirillum_phage	4.0e-07	46.5
WP_024751734.1\|2054216_2054498_-	hypothetical protein	NA	NA	NA	NA
WP_148889565.1\|2054494_2054824_-	DUF4406 domain-containing protein	A0A1B0YZW9	Pseudomonas_phage	9.4e-14	41.5
WP_024751624.1\|2054927_2055749_-	hypothetical protein	A0A139ZPI9	Marinitoga_camini_virus	1.8e-37	42.5
WP_081718571.1\|2055843_2056185_-	hypothetical protein	D2ECI8	Treponema_phage	2.8e-05	64.9
WP_148889567.1\|2056212_2056716_-	hypothetical protein	NA	NA	NA	NA
WP_148889797.1\|2056937_2057636_-	site-specific DNA-methyltransferase	E8ZD58	Streptococcus_phage	3.6e-31	36.0
WP_148889569.1\|2057643_2058432_-	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	6.1e-11	25.7
WP_148889571.1\|2058445_2059501_-	hypothetical protein	NA	NA	NA	NA
WP_148889572.1\|2059497_2060313_-	hypothetical protein	NA	NA	NA	NA
WP_148884079.1\|2060352_2060514_-	site-specific DNA-methyltransferase	F8TUJ7	EBPR_podovirus	5.4e-07	65.8

DBSCAN-SWA_9

2958926 : 3005847

Staphylococcus_phage(28.57%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024753078.1\|2958926_2959574_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_148878571.1\|2959806_2959986_+	hypothetical protein	NA	NA	NA	NA
WP_024753077.1\|2960439_2962911_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	3.0e-120	37.6
WP_002697999.1\|2962947_2963433_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_024753076.1\|2963696_2963888_+	hypothetical protein	NA	NA	NA	NA
WP_024753074.1\|2964318_2965692_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_002698671.1\|2965760_2966750_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_024753073.1\|2967045_2968002_+	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	3.9e-36	32.4
WP_039943739.1\|2968802_2969207_-	hypothetical protein	NA	NA	NA	NA
WP_002698660.1\|2969203_2970325_-	ABC transporter	NA	NA	NA	NA
WP_024753071.1\|2970325_2971366_-	ABC transporter	NA	NA	NA	NA
WP_024753070.1\|2971366_2972947_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	27.3
WP_002698654.1\|2973067_2974309_-	DUF3798 domain-containing protein	NA	NA	NA	NA
WP_024753069.1\|2975472_2976666_+	F420-0--gamma-glutamyl ligase	NA	NA	NA	NA
WP_081718784.1\|2976776_2977025_+	hypothetical protein	NA	NA	NA	NA
WP_002700292.1\|2977381_2977993_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_024753068.1\|2978045_2979194_+	S-methyl-5-thioribose kinase	NA	NA	NA	NA
WP_044634679.1\|2979340_2981764_+	hypothetical protein	NA	NA	NA	NA
WP_148879895.1\|2982372_2983167_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_148889720.1\|2983159_2983738_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_148889721.1\|2983977_2984310_+	hypothetical protein	NA	NA	NA	NA
WP_148889722.1\|2984410_2985592_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_024751992.1\|2985855_2986872_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	9.0e-23	30.3
WP_002699598.1\|2987056_2987470_+	hypothetical protein	NA	NA	NA	NA
WP_148879451.1\|2987723_2987852_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_024753062.1\|2987992_2988250_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_024753061.1\|2988433_2990344_-	PTS transporter subunit EIIA	NA	NA	NA	NA
WP_024753060.1\|2990530_2991445_-	1-phosphofructokinase	NA	NA	NA	NA
WP_002699592.1\|2991466_2992213_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002699590.1\|2992529_2993102_+	peroxiredoxin	NA	NA	NA	NA
WP_148879211.1\|2993749_2994244_+	DUF2715 domain-containing protein	NA	NA	NA	NA
WP_148884613.1\|2994246_2994426_+	hypothetical protein	NA	NA	NA	NA
WP_002699586.1\|2994584_2995481_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024753057.1\|2995484_2997146_-	glycosyl hydrolase family 3	NA	NA	NA	NA
WP_024753056.1\|2997145_2998069_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.3e-73	44.5
WP_148889723.1\|2998825_2999731_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148889724.1\|2999824_3001372_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002699573.1\|3002343_3003156_+	ABC transporter permease	NA	NA	NA	NA
WP_024753051.1\|3003080_3003959_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.1e-08	26.4
WP_148889725.1\|3003951_3004614_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.5e-07	26.8
WP_148889726.1\|3004665_3005847_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

3051212 : 3083648

Staphylococcus_phage(20.0%)

integrase,transposase,tail

attL 3054413:3054429|attR 3090073:3090089

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148889732.1\|3051212_3052196_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_002696721.1\|3052320_3052521_-	hypothetical protein	NA	NA	NA	NA
WP_024753013.1\|3052638_3052863_+	hypothetical protein	NA	NA	NA	NA
WP_148889733.1\|3053015_3053645_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_148878579.1\|3053592_3053715_-\|transposase	transposase	NA	NA	NA	NA
3054413:3054429	attL	NA	NA	NA	NA
WP_148889277.1\|3054663_3055350_-	site-specific DNA-methyltransferase	A0A1P8CMS8	Staphylococcus_phage	2.0e-34	35.6
WP_024751770.1\|3055508_3055694_-	hypothetical protein	NA	NA	NA	NA
WP_044634727.1\|3057116_3058367_-	DUF935 family protein	NA	NA	NA	NA
WP_002696334.1\|3058363_3059890_-	hypothetical protein	A0A0N7AEF1	Bacillus_phage	9.0e-51	29.1
WP_002696333.1\|3059886_3060423_-	DUF3486 family protein	NA	NA	NA	NA
WP_024751680.1\|3060438_3060729_-	hypothetical protein	NA	NA	NA	NA
WP_148879273.1\|3060755_3061154_-	hypothetical protein	NA	NA	NA	NA
WP_024751681.1\|3061158_3061464_-	hypothetical protein	NA	NA	NA	NA
WP_024751775.1\|3061417_3061780_-	hypothetical protein	NA	NA	NA	NA
WP_024751776.1\|3061763_3062099_-	hypothetical protein	NA	NA	NA	NA
WP_024751777.1\|3062122_3062677_-	N-acetylmuramoyl-L-alanine amidase	A0A0B5CTW5	Listeria_phage	1.4e-22	35.3
WP_081718572.1\|3062793_3063018_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148884621.1\|3063196_3063643_-	DUF1018 domain-containing protein	A4JWM5	Burkholderia_virus	5.5e-09	32.1
WP_002696309.1\|3063722_3064235_-	bacteriophage Mu Gam like protein	NA	NA	NA	NA
WP_002696308.1\|3064276_3064471_-	hypothetical protein	NA	NA	NA	NA
WP_148889734.1\|3064475_3065177_-	hypothetical protein	NA	NA	NA	NA
WP_148889803.1\|3065178_3066114_-	AAA family ATPase	NA	NA	NA	NA
WP_148889270.1\|3066125_3068006_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_148878638.1\|3068002_3068344_-	transcriptional regulator	NA	NA	NA	NA
WP_148889173.1\|3068539_3069127_+	hypothetical protein	NA	NA	NA	NA
WP_148889735.1\|3069235_3069682_-	hypothetical protein	NA	NA	NA	NA
WP_148889736.1\|3069687_3070128_-	hypothetical protein	NA	NA	NA	NA
WP_044634739.1\|3070669_3071530_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002695871.1\|3071711_3072002_+	hypothetical protein	NA	NA	NA	NA
WP_148878545.1\|3071988_3072549_+	hypothetical protein	NA	NA	NA	NA
WP_148878736.1\|3072601_3072940_-	DUF4325 domain-containing protein	NA	NA	NA	NA
WP_148878735.1\|3074065_3074413_+	hypothetical protein	NA	NA	NA	NA
WP_002695880.1\|3074463_3075462_+	hypothetical protein	NA	NA	NA	NA
WP_024752645.1\|3075523_3075982_+	hypothetical protein	NA	NA	NA	NA
WP_148889737.1\|3075978_3076593_+	phage morphogenesis protein	NA	NA	NA	NA
WP_148878912.1\|3076911_3078108_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_148889738.1\|3078340_3079192_+	hypothetical protein	NA	NA	NA	NA
WP_002695895.1\|3079272_3079659_+	hypothetical protein	NA	NA	NA	NA
WP_148889739.1\|3079889_3083648_+\|tail	phage tail tape measure protein	A0A0U4IIN6	Exiguobacterium_phage	1.2e-27	32.8
3090073:3090089	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP042818.1|WP_081718624.1|1964223_1964412_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP042818.1|WP_081718624.1|1964223_1964412_-|hypothetical-protein

1964223_1964412_-

62 aa aa

1908692-1979441

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP042818_9	Orphan	9.1\|2325306\|41\|NZ_CP042818\|CRISPRCasFinder	2325306-2325346	41	1966813-1966853	2

1. spacer 9.1|2325306|41|NZ_CP042818|CRISPRCasFinder matches to NZ_CP042818 position: 1966813-1966853, mismatch: 2

gttctgagttttgccgtccgtggcaaaaccaaaccgtctgc	CRISPR spacer
gttctgagttttgccgtccgtgccaaaaccaaaccatctgc	Protospacer
********************** ************.*****

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042818

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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