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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043329 Pedobacter sp. CJ43 chromosome, complete genome 7 crisprs WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK 0 1 3 0

Results visualization

1. NZ_CP043329
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_1 94446-94681 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_2 262842-262927 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_3 1152814-1153073 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_4 1851341-1851440 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_5 2294030-2294140 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_6 2701265-2701394 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043329_7 3460927-3461018 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP046705 Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence 234311-234344 7 0.794
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP010386 Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-121.660kb, complete sequence 23104-23137 8 0.765
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_AP014953 Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_2, complete sequence 93570-93603 8 0.765
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP027605 UNVERIFIED_ORG: Enterobacter cloacae strain AR_0093 plasmid unnamed1, complete sequence 66084-66117 8 0.765
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP013914 Serratia fonticola strain GS2 plasmid pSF001, complete sequence 106055-106088 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP022182 Aeromonas salmonicida strain S68 plasmid pS68-1, complete sequence 66349-66382 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NC_003276 Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence 213967-214000 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP022177 Aeromonas salmonicida strain S44 plasmid pS44-2, complete sequence 14287-14320 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP017144 Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed1, complete sequence 50557-50590 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP022171 Aeromonas salmonicida strain S121 plasmid pS121-2, complete sequence 63733-63766 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP038909 Piscirickettsia salmonis strain Psal-009 plasmid unnamed1, complete sequence 43641-43674 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 MN693074 Marine virus AFVG_25M380, complete genome 540-573 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 KJ010489 Enterococcus phage IME-EFm1, complete genome 29393-29426 9 0.735
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP013914 Serratia fonticola strain GS2 plasmid pSF001, complete sequence 106062-106095 10 0.706
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 MK765621 Tortoise microvirus 53 isolate 53_SP_156, complete genome 3188-3221 10 0.706
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 MK765603 Tortoise microvirus 51 isolate 51_SP_173, complete genome 3188-3221 10 0.706
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 LC377538 Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence 6598-6631 10 0.706
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP047806 Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence 8279-8312 10 0.706
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP046705 Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence 234318-234351 11 0.676
NZ_CP043329_3 3.4|1153020|34|NZ_CP043329|CRT 1153020-1153053 34 NZ_CP024792 Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence 287654-287687 12 0.647

1. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 7, identity: 0.794

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
taatttttaatttttaatttttaattgattcacc	Protospacer
 ******** **** *********** * * * *

2. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP010386 (Enterobacter hormaechei subsp. xiangfangensis strain 34399 plasmid p34399-121.660kb, complete sequence) position: , mismatch: 8, identity: 0.765

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
aaatatggttttttcgatttttaatttaataagc	Protospacer
.*** *   .**** .******************

3. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_AP014953 (Klebsiella oxytoca strain JKo3 plasmid pKO_JKo3_2, complete sequence) position: , mismatch: 8, identity: 0.765

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
aaatatggttttttcgatttttaatttaataagc	Protospacer
.*** *   .**** .******************

4. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP027605 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0093 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
aaatatggttttttcgatttttaatttaataagc	Protospacer
.*** *   .**** .******************

5. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP013914 (Serratia fonticola strain GS2 plasmid pSF001, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
taatttttaatttttaatttttaatttttatcgt	Protospacer
 ******** **** ************     *.

6. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP022182 (Aeromonas salmonicida strain S68 plasmid pS68-1, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
tgttttttaatttttaatttttaatttaaagtgg	Protospacer
 . ****** **** ************** . * 

7. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
taattttgaattttgaatttttaattttgaattg	Protospacer
 ****** * ***************** . *   

8. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP022177 (Aeromonas salmonicida strain S44 plasmid pS44-2, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
tgttttttaatttttaatttttaatttaaagtgg	Protospacer
 . ****** **** ************** . * 

9. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP017144 (Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
tgttttttaatttttaatttttaatttaaagtgg	Protospacer
 . ****** **** ************** . * 

10. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP022171 (Aeromonas salmonicida strain S121 plasmid pS121-2, complete sequence) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
tgttttttaatttttaatttttaatttaaagtgg	Protospacer
 . ****** **** ************** . * 

11. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP038909 (Piscirickettsia salmonis strain Psal-009 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gaatt---tttacttttgaatttttaatttaataagc	CRISPR spacer
---ttcagtttatttttgaattttgaatttaatcgtt	Protospacer
   **   ****.*********** ******** . .

12. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to MN693074 (Marine virus AFVG_25M380, complete genome) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaa-------tttaataagc	CRISPR spacer
gaattttttattttgaatttttaacaggttcttt-------	Protospacer
********  **************       ***       

13. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to KJ010489 (Enterococcus phage IME-EFm1, complete genome) position: , mismatch: 9, identity: 0.735

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
ttatttttccttttgattttttaattaatccatc	Protospacer
  ****** ******* ********* * . * *

14. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP013914 (Serratia fonticola strain GS2 plasmid pSF001, complete sequence) position: , mismatch: 10, identity: 0.706

-------gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
taatttttaatttttaatttttaatttttaattt-------	Protospacer
        ******** **** ************       

15. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to MK765621 (Tortoise microvirus 53 isolate 53_SP_156, complete genome) position: , mismatch: 10, identity: 0.706

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
atttttttatttttgattttttaattttttttgt	Protospacer
.  ******.****** **********  *  *.

16. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to MK765603 (Tortoise microvirus 51 isolate 51_SP_173, complete genome) position: , mismatch: 10, identity: 0.706

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
atttttttatttttgattttttaattttttttgt	Protospacer
.  ******.****** **********  *  *.

17. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to LC377538 (Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence) position: , mismatch: 10, identity: 0.706

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
cccctattacttatgaatttttaattgaatcaat	Protospacer
   .* ****** ************* *** *..

18. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP047806 (Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
cccctattacttatgaatttttaattgaatcaat	Protospacer
   .* ****** ************* *** *..

19. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 11, identity: 0.676

-------gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
ttttttttaatttttaatttttaatttttaattg-------	Protospacer
        ******** **** ***********        

20. spacer 3.4|1153020|34|NZ_CP043329|CRT matches to NZ_CP024792 (Nostoc flagelliforme CCNUN1 plasmid pNFSY07, complete sequence) position: , mismatch: 12, identity: 0.647

gaatttttacttttgaatttttaatttaataagc	CRISPR spacer
taatttttaatttttaatttttaataccccgtag	Protospacer
 ******** **** ********** .  .. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2764703 : 2771617 7 Synechococcus_phage(83.33%) NA NA
DBSCAN-SWA_2 3254254 : 3331404 58 Acidithiobacillus_phage(36.36%) tRNA,holin,protease,transposase NA
DBSCAN-SWA_3 3386789 : 3444875 54 Myxococcus_phage(25.0%) tRNA,integrase,protease,transposase attL 3386552:3386611|attR 3398809:3398879
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage