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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043386 Staphylococcus aureus strain NRS384 chromosome, complete genome 9 crisprs cas3,DEDDh,DinG,csa3,WYL 8 4 9 0
NZ_CP043388 Staphylococcus aureus strain NRS384 plasmid pNRS384_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043387 Staphylococcus aureus strain NRS384 plasmid pNRS384_1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP043386
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_1 433777-433877 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_2 678118-678210 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_3 853928-854013 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_4 897257-897338 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_5 960068-960350 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_6 1093740-1093827 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_7 2035776-2035854 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_8 2270727-2270877 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043386_9 2394644-2394837 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP043386_4 4.1|897281|34|NZ_CP043386|CRISPRCasFinder 897281-897314 34 NZ_CP043386.1 1386241-1386274 0 1.0
NZ_CP043386_4 4.1|897281|34|NZ_CP043386|CRISPRCasFinder 897281-897314 34 NZ_CP043386.1 1475433-1475466 0 1.0
NZ_CP043386_9 9.2|2394723|36|NZ_CP043386|CRT 2394723-2394758 36 NZ_CP043386.1 1178015-1178050 0 1.0
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP043386.1 2835954-2835979 1 0.962
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP043386.1 2836010-2836035 1 0.962
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP043386.1 816895-816920 1 0.962
NZ_CP043386_5 5.1|960098|26|NZ_CP043386|CRT 960098-960123 26 NZ_CP043386.1 960042-960067 1 0.962
NZ_CP043386_5 5.3|960212|26|NZ_CP043386|CRT 960212-960237 26 NZ_CP043386.1 854014-854039 1 0.962
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 853994-854026 1 0.97
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 1700712-1700744 1 0.97
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 2670604-2670636 1 0.97
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 1178071-1178103 1 0.97
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 1386196-1386228 1 0.97
NZ_CP043386_9 9.2|2394723|36|NZ_CP043386|CRT 2394723-2394758 36 NZ_CP043386.1 1879165-1879200 1 0.972
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP043386.1 816951-816976 2 0.923
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP043386.1 960042-960067 2 0.923
NZ_CP043386_5 5.1|960098|26|NZ_CP043386|CRT 960098-960123 26 NZ_CP043386.1 2835954-2835979 2 0.923
NZ_CP043386_5 5.1|960098|26|NZ_CP043386|CRT 960098-960123 26 NZ_CP043386.1 2836010-2836035 2 0.923
NZ_CP043386_5 5.1|960098|26|NZ_CP043386|CRT 960098-960123 26 NZ_CP043386.1 816895-816920 2 0.923
NZ_CP043386_5 5.3|960212|26|NZ_CP043386|CRT 960212-960237 26 NZ_CP043386.1 395110-395135 2 0.923
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NZ_CP043386.1 1475479-1475511 2 0.939
NZ_CP043386_9 9.1|2394667|33|NZ_CP043386|CRT 2394667-2394699 33 NZ_CP043386.1 853994-854026 2 0.939
NZ_CP043386_9 9.1|2394667|33|NZ_CP043386|CRT 2394667-2394699 33 NZ_CP043386.1 1475479-1475511 2 0.939
NZ_CP043386_9 9.1|2394667|33|NZ_CP043386|CRT 2394667-2394699 33 NZ_CP043386.1 2670604-2670636 2 0.939
NZ_CP043386_9 9.1|2394667|33|NZ_CP043386|CRT 2394667-2394699 33 NZ_CP043386.1 1178071-1178103 2 0.939
NZ_CP043386_9 9.1|2394667|33|NZ_CP043386|CRT 2394667-2394699 33 NZ_CP043386.1 1386196-1386228 2 0.939
NZ_CP043386_9 9.2|2394723|36|NZ_CP043386|CRT 2394723-2394758 36 NZ_CP043386.1 1700651-1700686 2 0.944
NZ_CP043386_9 9.2|2394723|36|NZ_CP043386|CRT 2394723-2394758 36 NZ_CP043386.1 2046602-2046637 2 0.944
NZ_CP043386_9 9.3|2394782|33|NZ_CP043386|CRT 2394782-2394814 33 NZ_CP043386.1 853994-854026 2 0.939
NZ_CP043386_9 9.3|2394782|33|NZ_CP043386|CRT 2394782-2394814 33 NZ_CP043386.1 2670604-2670636 2 0.939
NZ_CP043386_9 9.3|2394782|33|NZ_CP043386|CRT 2394782-2394814 33 NZ_CP043386.1 1178071-1178103 2 0.939
NZ_CP043386_9 9.3|2394782|33|NZ_CP043386|CRT 2394782-2394814 33 NZ_CP043386.1 1386196-1386228 2 0.939

1. spacer 4.1|897281|34|NZ_CP043386|CRISPRCasFinder matches to position: 1386241-1386274, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|897281|34|NZ_CP043386|CRISPRCasFinder matches to position: 1475433-1475466, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 9.2|2394723|36|NZ_CP043386|CRT matches to position: 1178015-1178050, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to position: 2835954-2835979, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

5. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to position: 2836010-2836035, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

6. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to position: 816895-816920, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

7. spacer 5.1|960098|26|NZ_CP043386|CRT matches to position: 960042-960067, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 5.3|960212|26|NZ_CP043386|CRT matches to position: 854014-854039, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 853994-854026, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 1700712-1700744, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

11. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 2670604-2670636, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

12. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 1178071-1178103, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

13. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 1386196-1386228, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

14. spacer 9.2|2394723|36|NZ_CP043386|CRT matches to position: 1879165-1879200, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

15. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to position: 816951-816976, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

16. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to position: 960042-960067, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

17. spacer 5.1|960098|26|NZ_CP043386|CRT matches to position: 2835954-2835979, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

18. spacer 5.1|960098|26|NZ_CP043386|CRT matches to position: 2836010-2836035, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

19. spacer 5.1|960098|26|NZ_CP043386|CRT matches to position: 816895-816920, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

20. spacer 5.3|960212|26|NZ_CP043386|CRT matches to position: 395110-395135, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

21. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to position: 1475479-1475511, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

22. spacer 9.1|2394667|33|NZ_CP043386|CRT matches to position: 853994-854026, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 9.1|2394667|33|NZ_CP043386|CRT matches to position: 1475479-1475511, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

24. spacer 9.1|2394667|33|NZ_CP043386|CRT matches to position: 2670604-2670636, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

25. spacer 9.1|2394667|33|NZ_CP043386|CRT matches to position: 1178071-1178103, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

26. spacer 9.1|2394667|33|NZ_CP043386|CRT matches to position: 1386196-1386228, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

27. spacer 9.2|2394723|36|NZ_CP043386|CRT matches to position: 1700651-1700686, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

28. spacer 9.2|2394723|36|NZ_CP043386|CRT matches to position: 2046602-2046637, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

29. spacer 9.3|2394782|33|NZ_CP043386|CRT matches to position: 853994-854026, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2394782|33|NZ_CP043386|CRT matches to position: 2670604-2670636, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 9.3|2394782|33|NZ_CP043386|CRT matches to position: 1178071-1178103, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

32. spacer 9.3|2394782|33|NZ_CP043386|CRT matches to position: 1386196-1386228, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043386_5 5.4|960268|53|NZ_CP043386|CRT 960268-960320 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP043386_3 3.1|853958|26|NZ_CP043386|CRISPRCasFinder 853958-853983 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP043386_5 5.3|960212|26|NZ_CP043386|CRT 960212-960237 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP043386_7 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder 2035799-2035831 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 5.4|960268|53|NZ_CP043386|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 3.1|853958|26|NZ_CP043386|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 5.3|960212|26|NZ_CP043386|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 7.1|2035799|33|NZ_CP043386|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 785586 : 793406 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 805378 : 820109 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 898819 : 918049 25 Staphylococcus_phage(63.16%) capsid,terminase,integrase attL 901356:901372|attR 915312:915328
DBSCAN-SWA_4 1078964 : 1087437 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1529205 : 1616443 107 Staphylococcus_phage(84.42%) holin,plate,head,capsid,terminase,tRNA,integrase,tail,portal,protease attL 1565568:1565588|attR 1611461:1611481
DBSCAN-SWA_6 1672274 : 1680586 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1749723 : 1758766 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1884228 : 1963561 78 Staphylococcus_phage(96.61%) transposase,tRNA,protease NA
DBSCAN-SWA_9 2061292 : 2148938 112 Staphylococcus_phage(92.31%) holin,head,capsid,terminase,integrase,tail,portal,protease attL 2110124:2110141|attR 2135055:2135072
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage