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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043391 Staphylococcus aureus strain NRS384-rpoB-H481N-SCV plasmid pNRS384_2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP043389 Staphylococcus aureus strain NRS384-rpoB-H481N-SCV chromosome, complete genome 9 crisprs cas3,DinG,DEDDh,csa3,WYL 9 4 11 1
NZ_CP043390 Staphylococcus aureus strain NRS384-rpoB-H481N-SCV plasmid pNRS384_1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP043389
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_1 433777-433877 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_2 1442080-1442388 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_3 1505092-1505173 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_4 1541060-1541152 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_5 1548417-1548502 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_6 1724220-1724312 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_7 2035776-2035854 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_8 2270727-2270877 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043389_9 2394644-2394837 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP043389_3 3.1|1505116|34|NZ_CP043389|CRISPRCasFinder 1505116-1505149 34 NZ_CP043389.1 926964-926997 0 1.0
NZ_CP043389_3 3.1|1505116|34|NZ_CP043389|CRISPRCasFinder 1505116-1505149 34 NZ_CP043389.1 1016156-1016189 0 1.0
NZ_CP043389_9 9.2|2394723|36|NZ_CP043389|CRT 2394723-2394758 36 NZ_CP043389.1 1224380-1224415 0 1.0
NZ_CP043389_2 2.2|1442193|26|NZ_CP043389|CRT 1442193-1442218 26 NZ_CP043389.1 1548391-1548416 1 0.962
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP043389.1 1585510-1585535 1 0.962
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP043389.1 2835954-2835979 1 0.962
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP043389.1 2836010-2836035 1 0.962
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 1016202-1016234 1 0.97
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 1224327-1224359 1 0.97
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 2670604-2670636 1 0.97
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 701686-701718 1 0.97
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 1548404-1548436 1 0.97
NZ_CP043389_9 9.2|2394723|36|NZ_CP043389|CRT 2394723-2394758 36 NZ_CP043389.1 523230-523265 1 0.972
NZ_CP043389_2 2.2|1442193|26|NZ_CP043389|CRT 1442193-1442218 26 NZ_CP043389.1 395110-395135 2 0.923
NZ_CP043389_2 2.4|1442307|26|NZ_CP043389|CRT 1442307-1442332 26 NZ_CP043389.1 1585510-1585535 2 0.923
NZ_CP043389_2 2.4|1442307|26|NZ_CP043389|CRT 1442307-1442332 26 NZ_CP043389.1 2835954-2835979 2 0.923
NZ_CP043389_2 2.4|1442307|26|NZ_CP043389|CRT 1442307-1442332 26 NZ_CP043389.1 2836010-2836035 2 0.923
NZ_CP043389_2 2.5|1442333|33|NZ_CP043389|CRISPRCasFinder 1442333-1442365 33 NZ_CP043389.1 1504812-1504844 2 0.939
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP043389.1 1585454-1585479 2 0.923
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NZ_CP043389.1 926919-926951 2 0.939
NZ_CP043389_9 9.1|2394667|33|NZ_CP043389|CRT 2394667-2394699 33 NZ_CP043389.1 1016202-1016234 2 0.939
NZ_CP043389_9 9.1|2394667|33|NZ_CP043389|CRT 2394667-2394699 33 NZ_CP043389.1 1224327-1224359 2 0.939
NZ_CP043389_9 9.1|2394667|33|NZ_CP043389|CRT 2394667-2394699 33 NZ_CP043389.1 2670604-2670636 2 0.939
NZ_CP043389_9 9.1|2394667|33|NZ_CP043389|CRT 2394667-2394699 33 NZ_CP043389.1 926919-926951 2 0.939
NZ_CP043389_9 9.1|2394667|33|NZ_CP043389|CRT 2394667-2394699 33 NZ_CP043389.1 1548404-1548436 2 0.939
NZ_CP043389_9 9.2|2394723|36|NZ_CP043389|CRT 2394723-2394758 36 NZ_CP043389.1 701744-701779 2 0.944
NZ_CP043389_9 9.2|2394723|36|NZ_CP043389|CRT 2394723-2394758 36 NZ_CP043389.1 2046602-2046637 2 0.944
NZ_CP043389_9 9.3|2394782|33|NZ_CP043389|CRT 2394782-2394814 33 NZ_CP043389.1 1016202-1016234 2 0.939
NZ_CP043389_9 9.3|2394782|33|NZ_CP043389|CRT 2394782-2394814 33 NZ_CP043389.1 1224327-1224359 2 0.939
NZ_CP043389_9 9.3|2394782|33|NZ_CP043389|CRT 2394782-2394814 33 NZ_CP043389.1 2670604-2670636 2 0.939
NZ_CP043389_9 9.3|2394782|33|NZ_CP043389|CRT 2394782-2394814 33 NZ_CP043389.1 1548404-1548436 2 0.939

1. spacer 3.1|1505116|34|NZ_CP043389|CRISPRCasFinder matches to position: 926964-926997, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 3.1|1505116|34|NZ_CP043389|CRISPRCasFinder matches to position: 1016156-1016189, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 9.2|2394723|36|NZ_CP043389|CRT matches to position: 1224380-1224415, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 2.2|1442193|26|NZ_CP043389|CRT matches to position: 1548391-1548416, mismatch: 1, identity: 0.962

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
***.**********************

5. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to position: 1585510-1585535, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

6. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to position: 2835954-2835979, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.************

7. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to position: 2836010-2836035, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ************

8. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 1016202-1016234, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

9. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 1224327-1224359, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

10. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 2670604-2670636, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

11. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 701686-701718, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

12. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 1548404-1548436, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

13. spacer 9.2|2394723|36|NZ_CP043389|CRT matches to position: 523230-523265, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

14. spacer 2.2|1442193|26|NZ_CP043389|CRT matches to position: 395110-395135, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

15. spacer 2.4|1442307|26|NZ_CP043389|CRT matches to position: 1585510-1585535, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

16. spacer 2.4|1442307|26|NZ_CP043389|CRT matches to position: 2835954-2835979, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
********.***.*************

17. spacer 2.4|1442307|26|NZ_CP043389|CRT matches to position: 2836010-2836035, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
********.*** *************

18. spacer 2.5|1442333|33|NZ_CP043389|CRISPRCasFinder matches to position: 1504812-1504844, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

19. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to position: 1585454-1585479, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

20. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to position: 926919-926951, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

21. spacer 9.1|2394667|33|NZ_CP043389|CRT matches to position: 1016202-1016234, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

22. spacer 9.1|2394667|33|NZ_CP043389|CRT matches to position: 1224327-1224359, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

23. spacer 9.1|2394667|33|NZ_CP043389|CRT matches to position: 2670604-2670636, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

24. spacer 9.1|2394667|33|NZ_CP043389|CRT matches to position: 926919-926951, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

25. spacer 9.1|2394667|33|NZ_CP043389|CRT matches to position: 1548404-1548436, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

26. spacer 9.2|2394723|36|NZ_CP043389|CRT matches to position: 701744-701779, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

27. spacer 9.2|2394723|36|NZ_CP043389|CRT matches to position: 2046602-2046637, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

28. spacer 9.3|2394782|33|NZ_CP043389|CRT matches to position: 1016202-1016234, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

29. spacer 9.3|2394782|33|NZ_CP043389|CRT matches to position: 1224327-1224359, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

30. spacer 9.3|2394782|33|NZ_CP043389|CRT matches to position: 2670604-2670636, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

31. spacer 9.3|2394782|33|NZ_CP043389|CRT matches to position: 1548404-1548436, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043389_2 2.1|1442110|53|NZ_CP043389|CRT 1442110-1442162 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP043389_2 2.2|1442193|26|NZ_CP043389|CRT 1442193-1442218 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP043389_5 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder 1548447-1548472 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP043389_7 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder 2035799-2035831 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 2.1|1442110|53|NZ_CP043389|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 2.2|1442193|26|NZ_CP043389|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

4. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

5. spacer 5.1|1548447|26|NZ_CP043389|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

6. spacer 7.1|2035799|33|NZ_CP043389|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 461314 : 502312 44 Staphylococcus_phage(94.12%) protease,transposase NA
DBSCAN-SWA_2 505472 : 518201 6 Staphylococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_3 643663 : 652706 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 721843 : 730155 7 Caulobacter_phage(16.67%) tRNA NA
DBSCAN-SWA_5 785986 : 873224 107 Staphylococcus_phage(84.42%) portal,integrase,head,tail,terminase,plate,protease,capsid,holin,tRNA attL 790949:790969|attR 836842:836862
DBSCAN-SWA_6 1314992 : 1323465 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1484380 : 1503610 25 Staphylococcus_phage(63.16%) terminase,integrase,capsid attL 1487102:1487118|attR 1501058:1501074
DBSCAN-SWA_8 1582320 : 1597051 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_9 1609023 : 1616843 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_10 1941952 : 1963561 24 Staphylococcus_phage(100.0%) protease NA
DBSCAN-SWA_11 2061292 : 2148938 112 Staphylococcus_phage(92.31%) portal,integrase,tail,head,terminase,protease,capsid,holin attL 2110124:2110141|attR 2135055:2135072
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP043389.1|WP_001790641.1|1593366_1593468_-|hypothetical-protein 1593366_1593468_- 33 aa aa NA NA NA 1582320-1597051 yes