CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043404	Bacillus safensis strain PgKB20 chromosome, complete genome	3 crisprs	cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK,csa3,cas3,WYL,DEDDh,DinG	0	6	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043404_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043404_1

647682-648043

TypeIII

NA:I-C

Consensus_repeat	Method
ATTTCAATCCANGCACTCATGTNGAGTGCGAC	CRT
AATTTCAATCCACGCACTCATGTAGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CRISPRCasFinder

5 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK

The CRISPR arrays of NZ_CP043404_1

>merge|NZ_CP043404|1|647682-648043|CRT,PILER-CR,CRISPRCasFinder
ACTGTGAACTATGCATTTATGTTGAGTGCGATACCAGGCTTTCCTGTCTTTTCCCACCATTCACCATTTCAATCCATGCACTCATGTTGAGTGCGACTATTTGAACCTGTCCTTTTCGTCCATCCAAACGAATTTCAATCCACGCACTCATGTAGAGTGCGACCGCATCCGGCATTATCATGCGAGATATTACCTTGAATTTCAATCCACGCACTCATGTAGAGTGCGACGGGGGAGGTTTTGATTTGAATAAAAAATGGATAAATTTCAATCCACGCACTCATGTAGAGTGCGACCGAAGCGCCGTTTGAATACTTAGCTAAAAAGGCATTTCAATCCACGCACTCATGTAGAGTGCGACT

>NZ_CP043404|1|1|647682-648042|CRT
ACTGTGAACTATGCATTTATGTTGAGTGCGAT	ACCAGGCTTTCCTGTCTTTTCCCACCATTCACC
ATTTCAATCCATGCACTCATGTTGAGTGCGAC	TATTTGAACCTGTCCTTTTCGTCCATCCAAACGA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CGCATCCGGCATTATCATGCGAGATATTACCTTGA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	GGGGGAGGTTTTGATTTGAATAAAAAATGGATAA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CGAAGCGCCGTTTGAATACTTAGCTAAAAAGGC
ATTTCAATCCACGCACTCATGTAGAGTGCGAC

>NZ_CP043404|1|1|647747-647977|PILER-CR
ATTTCAATCCATGCACTCATGTTGAGTGCGACT	ATTTGAACCTGTCCTTTTCGTCCATCCAAACGA
ATTTCAATCCACGCACTCATGTAGAGTGCGACC	GCATCCGGCATTATCATGCGAGATATTACCTTGA
ATTTCAATCCACGCACTCATGTAGAGTGCGACG	GGGGAGGTTTTGATTTGAATAAAAAATGGATAA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC

>NZ_CP043404|1|1|647747-648043|CRISPRCasFinder
ATTTCAATCCATGCACTCATGTTGAGTGCGAC	TATTTGAACCTGTCCTTTTCGTCCATCCAAACGA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CGCATCCGGCATTATCATGCGAGATATTACCTTGA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	GGGGGAGGTTTTGATTTGAATAAAAAATGGATAA
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CGAAGCGCCGTTTGAATACTTAGCTAAAAAGGC
ATTTCAATCCACGCACTCATGTAGAGTGCGACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043404.1\|WP_024425209.1\|642954_643485_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP043404.1\|WP_135033160.1\|639981_641004_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP043404.1\|WP_149125841.1\|641116_642859_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP043404.1\|WP_003217808.1\|645126_645351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP043404.1\|WP_149125842.1\|643632_643893_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP043404.1\|WP_012009334.1\|644067_644232_-\|gamma-type-small-acid-soluble-spore-protein	unknown	unknown	unknown
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP043404.1\|WP_149125849.1\|655220_656063_-\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP043404.1\|WP_149125840.1\|639035_640013_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP043404.1\|WP_024425211.1\|644292_645045_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145

Protein	Function_ID	Function_description	E-value
NZ_CP043404.1\|WP_024425209.1\|642954_643485_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	3.46751e-129
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.09743e-50
NZ_CP043404.1\|WP_135033160.1\|639981_641004_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.23323e-173
NZ_CP043404.1\|WP_149125841.1\|641116_642859_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP043404.1\|WP_024425211.1\|644292_645045_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.04693e-172
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.27378e-65
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	2.91578e-25
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	4.63316e-17
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.98413e-55
NZ_CP043404.1\|WP_149125842.1\|643632_643893_-\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	8.72265e-16
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.00092e-80
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.88193e-148
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.13794e-10
NZ_CP043404.1\|WP_149125840.1\|639035_640013_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	4.00109e-130
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	8.63032e-44
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.65708e-68
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11

>NZ_CP043404.1|WP_149125844.1|646629_647610_+|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHLVAIVVWAIGGHPGFTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP043404.1|WP_149125843.1|645337_646438_-|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYDGIVPNTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSAFEEGVQYELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETMKGRKTEKEQLIDFLKEEAGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTTEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP043404.1|WP_003217808.1|645126_645351_+|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD
>NZ_CP043404.1|WP_024425211.1|644292_645045_-|enoyl-[acyl-carrier-protein]-reductase-FabL
MSQRKCALITGSSRGVGKEVALRLAEKGYDIVINYARSKKAALETAEEIEAMGVKTLVVKANVGQPEKIKDMFQQIDETFGRLDVFVNNAASGVQRPIMDLEENHWDWTMNINAKALLFCGQEAAKLMEKNGGGHIVSISSLGSIRYLENYTVVGVSKAALEALTRYLSVELSQKNIVVNAVSGGAIDTDALKHFPNREELLEDAKKNTPAGRMVEIKDMVDSVEFLVSGKADMIRGQTIIVDGGRSLLV
>NZ_CP043404.1|WP_012009334.1|644067_644232_-|gamma-type-small-acid-soluble-spore-protein
MDQQQNKTNAQQVKKQNQAAAQGGQYGTEFASETDAQHVKKYNQKAEQNKQQNS
>NZ_CP043404.1|WP_149125842.1|643632_643893_-|hypothetical-protein
MSDFDQLVKEQMQLMDQLLDVQGELDLCLETEKQLLQDEKKEEWHRLCDQIKQKREELQKVQTLFKKQTEEVINSYKQMEKSSSVM
>NZ_CP043404.1|WP_024425209.1|642954_643485_-|DUF402-domain-containing-protein
MGYPKEGETIQIQSYKHNGLIHRIWNETTILKATELCIIGANDRTMVTESDGRTWMTREPAICYFHAKQWFNVIGMLRDDGVYYYCNISSPFATDDEAIKYIDYDLDVKVFPDMTYNILDEDEYADHKRQMNYPKEIDSILREHLNTLLHWIHQRKGPFAPEFVDMWYERFLHYTK
>NZ_CP043404.1|WP_149125841.1|641116_642859_-|ATP-binding-cassette-domain-containing-protein
MGVIKRYMAFVTPYKKQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSGSAEEKTSTLLIIMGIMLVLFLVLRPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKEFVITGLMNIWLDMMTVLIVIAIMCTLDLKLTIVSVIIFPLYAFAVKYFYGRLRKLTKERSQALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNTITDIAPLLIIAFAGYTVINGSLSIGTMIAFVGYIDRMYNPIRRLINSSTTLTQSVASMDRIFEFIDEPYEVTDRPNAKEANHLKGEVEFKNVSFRYEHTQEEILHNISLKVEKGQTVALVGMSGGGKSTLVSLIPRFYDITNGSLEIDGIDIKEYKARSLRNQVGMVLQDTFLFSDTIKENIAVGDPEASFEKIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADQIVVMEQGEIVEKGTHEELMNQDSHYRHLFTIQTLN
>NZ_CP043404.1|WP_135033160.1|639981_641004_-|ABC-transporter-ATP-binding-protein
MKEQDVLLDVKQLSIAFQQKKQKVPIVHHISFSIQKGETLGIVGESGCGKSITSMSLMGLNQQTDTTGEVHFEGQNLLSLSEKEWREIRGNDISMIFQEPMTSLNPLMPIGKQMTEALFTHQAIGQKEAKAKAVDLLETVGLKQAESLLKKYPHELSGGMRQRVMIAMAMLCHPKLMIADEPTTALDVTIQAQILRLLKKLNEEMDTAILFITHDLGVVRQICQRVMIMYAGRIVEEGTVDRIFQKPLHPYTKGLFASVPSFKEKKEKLISIAGHVPKPGAIRSGCQFAPRCPYQMAQCLEKDPALQSIEQNHRVACFLMEGGEDTESPTLASESADKTV
>NZ_CP043404.1|WP_149125840.1|639035_640013_-|ATP-binding-cassette-domain-containing-protein
MQVNQLTKRYDTAAFFSKHKQSTLALNQVSFHVKEGETLGIVGESGCGKSTLGKSLMRLTEPTSGSIQLKGQEITLLKERDMRSLRKDIQMIFQDPYASLNPRMKIKDILEEPLIVHQHGTKAKRRKRVKEMLHIVGFDPSYGERYAHQFSGGQRQRIGIARALITHPSLVIADEPVSALDVSVQAQILNLMLELQKTLSLTYLFISHDLGVVRYMSDRIAVMYAGRIVEMGPAEDVFHSPLHPYTSLLLKSIPHMDHVLEAQDVAAEETTMTERGGCPFYKRCPKRWEKCLKAVPALYEEAPGHAAACYLYQKEEHNEEDMVIQ
>NZ_CP043404.1|WP_149125845.1|648870_649716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIGGSTLSDIINDSAEKQSFYENVIRLHRKQWGKNRFLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGVPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALMMPETIGEAFKVDVMTPHHSDYNSVKLDKMNKGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEEAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDDIS
>NZ_CP043404.1|WP_041106375.1|649643_650012_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLRLTITFFEAKSKKGNAYQQFVQDIKETLDIQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP043404.1|WP_135033164.1|650008_650899_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDFIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAKQMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGERS
>NZ_CP043404.1|WP_149125846.1|650891_652124_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MPDRWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYSKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMYQVRPKPMMSEGQGFFGTGKTGRFSEELWPPVGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVENGSKKAKDQHLFSTESLIFPDDFKLEAGIELSTEESEGLKPFSGIHPIGGERRLAHIEEKPHVYQQDWTCPDAIKESLKNKPYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP043404.1|WP_149125847.1|652116_653928_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEESQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKTGAKKLQELGGTLIFPVFNESSAEPNNAPNKILGEISHEQPSSVARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVADLIEFYAVWTEMQTQEEAANASASPYHMALQEVEGLMAARKTLRDFKQNEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAKWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLDQNEQMKQTAIKYVKDVETYLENMNLKVAPIDWSEASLFYERRIEDYLEQCGLVGIARTKAKNDITQLLEKYFKGEYSKHHGQPIKPPTPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKARGIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQREFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTAWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTITECMIIALQLEEVSGHA
>NZ_CP043404.1|WP_149125848.1|653897_655205_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRESRKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDQDRPIRESAIRGHLRFWWRATRGAACKNVNELSKREADIFGHTEQASQIQVVTHYEKNEVKRNSKVFYKKRNHPFPRYVLSNMKDETPYLMKAQFSLNIRLSKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPSSSREWPTLSREFKVQAFPLSMISSWRSVIQTYETFRRRSNPYKKRGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDSGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPKIEALSLLGDGKPLPDVTDEQSIYPTATYSNNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNHKNKH
>NZ_CP043404.1|WP_149125849.1|655220_656063_-|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAVFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNLKEKGLEEWSKKIKQLTPKTTGIARMATGYFTSESNTQKRTRPLLILASNFKREGDHTISNKAAELAASFDFMLMKKSNEYQLKVPNEHEHLRWWSNELNCFKQEKRSKEEEKFLDENKLSGLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP043404.1|WP_029707333.1|656923_657145_-|hypothetical-protein
MSVHEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP043404.1|WP_149125850.1|657092_657695_-|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLRQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKAYQQLTDKQKMVLTQIYVEGQTMKEIADQFGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP043404.1|WP_073204399.1|657861_658026_+|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD

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Crispr_ID: NZ_CP043404_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043404_2

648335-648696

TypeIII

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CRISPRCasFinder
ATTTCAATCCACGCACTCATNTAGAGTGCGAC	CRT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	PILER-CR

5 spacers

cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PD-DExK

The CRISPR arrays of NZ_CP043404_2

>merge|NZ_CP043404|2|648335-648696|CRISPRCasFinder,CRT,PILER-CR
TTATTAATCCACCCACTCATGTTGAGTGCGACGACCAATACGGTGACACCCCGGTTAAATCAACGATATTTCAATCCACGCACTCATATAGAGTGCGACAATTGCGCTAGATAAAAATCTTGGAATGCTAACATTTCAATCCACGCACTCGTGTAGAGTGCGACCTATGATCTGAAAGGCTGGATGAAACACGCTCAAATTTCAATCCACGCACTCATATAGAGTGCGACACGGGCAGTTATATAGGCTCACACCAAACGATTATTTCAATCCACGCACTCATATAGAGTGCGACATTGATGCGACTAGATACGCATTTGAGCGTGATATATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|2|2|648335-648696|CRISPRCasFinder
TTATTAATCCACCCACTCATGTTGAGTGCGAC	GACCAATACGGTGACACCCCGGTTAAATCAACGAT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AATTGCGCTAGATAAAAATCTTGGAATGCTAAC
ATTTCAATCCACGCACTCGTGTAGAGTGCGAC	CTATGATCTGAAAGGCTGGATGAAACACGCTCAA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ACGGGCAGTTATATAGGCTCACACCAAACGATT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ATTGATGCGACTAGATACGCATTTGAGCGTGATAT
ATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|2|2|648335-648696|CRT
TTATTAATCCACCCACTCATGTTGAGTGCGAC	GACCAATACGGTGACACCCCGGTTAAATCAACGAT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AATTGCGCTAGATAAAAATCTTGGAATGCTAAC
ATTTCAATCCACGCACTCGTGTAGAGTGCGAC	CTATGATCTGAAAGGCTGGATGAAACACGCTCAA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ACGGGCAGTTATATAGGCTCACACCAAACGATT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ATTGATGCGACTAGATACGCATTTGAGCGTGATAT
ATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|2|2|648402-648696|PILER-CR
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AATTGCGCTAGATAAAAATCTTGGAATGCTAAC
ATTTCAATCCACGCACTCGTGTAGAGTGCGAC	CTATGATCTGAAAGGCTGGATGAAACACGCTCAA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ACGGGCAGTTATATAGGCTCACACCAAACGATT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	ATTGATGCGACTAGATACGCATTTGAGCGTGATAT
ATTTCAATCCACGCACTCATATAGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043404.1\|WP_024425209.1\|642954_643485_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP043404.1\|WP_135033160.1\|639981_641004_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP043404.1\|WP_149125841.1\|641116_642859_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP043404.1\|WP_003217808.1\|645126_645351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP043404.1\|WP_149125842.1\|643632_643893_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP043404.1\|WP_012009334.1\|644067_644232_-\|gamma-type-small-acid-soluble-spore-protein	unknown	unknown	unknown
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP043404.1\|WP_149125849.1\|655220_656063_-\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP043404.1\|WP_149125840.1\|639035_640013_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP043404.1\|WP_024425211.1\|644292_645045_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145

Protein	Function_ID	Function_description	E-value
NZ_CP043404.1\|WP_024425209.1\|642954_643485_-\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	3.46751e-129
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.09743e-50
NZ_CP043404.1\|WP_135033160.1\|639981_641004_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.23323e-173
NZ_CP043404.1\|WP_149125841.1\|641116_642859_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP043404.1\|WP_024425211.1\|644292_645045_-\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.04693e-172
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.27378e-65
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	2.91578e-25
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	4.63316e-17
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.98413e-55
NZ_CP043404.1\|WP_149125842.1\|643632_643893_-\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	8.72265e-16
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.00092e-80
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.88193e-148
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.13794e-10
NZ_CP043404.1\|WP_149125840.1\|639035_640013_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	4.00109e-130
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	8.63032e-44
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.65708e-68
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11

>NZ_CP043404.1|WP_149125844.1|646629_647610_+|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHLVAIVVWAIGGHPGFTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP043404.1|WP_149125843.1|645337_646438_-|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYDGIVPNTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSAFEEGVQYELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETMKGRKTEKEQLIDFLKEEAGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTTEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP043404.1|WP_003217808.1|645126_645351_+|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD
>NZ_CP043404.1|WP_024425211.1|644292_645045_-|enoyl-[acyl-carrier-protein]-reductase-FabL
MSQRKCALITGSSRGVGKEVALRLAEKGYDIVINYARSKKAALETAEEIEAMGVKTLVVKANVGQPEKIKDMFQQIDETFGRLDVFVNNAASGVQRPIMDLEENHWDWTMNINAKALLFCGQEAAKLMEKNGGGHIVSISSLGSIRYLENYTVVGVSKAALEALTRYLSVELSQKNIVVNAVSGGAIDTDALKHFPNREELLEDAKKNTPAGRMVEIKDMVDSVEFLVSGKADMIRGQTIIVDGGRSLLV
>NZ_CP043404.1|WP_012009334.1|644067_644232_-|gamma-type-small-acid-soluble-spore-protein
MDQQQNKTNAQQVKKQNQAAAQGGQYGTEFASETDAQHVKKYNQKAEQNKQQNS
>NZ_CP043404.1|WP_149125842.1|643632_643893_-|hypothetical-protein
MSDFDQLVKEQMQLMDQLLDVQGELDLCLETEKQLLQDEKKEEWHRLCDQIKQKREELQKVQTLFKKQTEEVINSYKQMEKSSSVM
>NZ_CP043404.1|WP_024425209.1|642954_643485_-|DUF402-domain-containing-protein
MGYPKEGETIQIQSYKHNGLIHRIWNETTILKATELCIIGANDRTMVTESDGRTWMTREPAICYFHAKQWFNVIGMLRDDGVYYYCNISSPFATDDEAIKYIDYDLDVKVFPDMTYNILDEDEYADHKRQMNYPKEIDSILREHLNTLLHWIHQRKGPFAPEFVDMWYERFLHYTK
>NZ_CP043404.1|WP_149125841.1|641116_642859_-|ATP-binding-cassette-domain-containing-protein
MGVIKRYMAFVTPYKKQIALTMVIGMIKFSIPLTLPLLLKYVIDDVIQGSGSAEEKTSTLLIIMGIMLVLFLVLRPPVEYYRQYYAQWTGSKVLFDIREKLFSHIQKLSLRYYANTRTGEIISRVINDVEQTKEFVITGLMNIWLDMMTVLIVIAIMCTLDLKLTIVSVIIFPLYAFAVKYFYGRLRKLTKERSQALAEVQGHLHERVQGMPVIRSFAIEEYEQENFHDENKNFLNKAINHTNWNAKTFAVVNTITDIAPLLIIAFAGYTVINGSLSIGTMIAFVGYIDRMYNPIRRLINSSTTLTQSVASMDRIFEFIDEPYEVTDRPNAKEANHLKGEVEFKNVSFRYEHTQEEILHNISLKVEKGQTVALVGMSGGGKSTLVSLIPRFYDITNGSLEIDGIDIKEYKARSLRNQVGMVLQDTFLFSDTIKENIAVGDPEASFEKIVSAAKAANAHDFIMSLPEGYDTKVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMQKLAKDRTTFIVAHRLSTITHADQIVVMEQGEIVEKGTHEELMNQDSHYRHLFTIQTLN
>NZ_CP043404.1|WP_135033160.1|639981_641004_-|ABC-transporter-ATP-binding-protein
MKEQDVLLDVKQLSIAFQQKKQKVPIVHHISFSIQKGETLGIVGESGCGKSITSMSLMGLNQQTDTTGEVHFEGQNLLSLSEKEWREIRGNDISMIFQEPMTSLNPLMPIGKQMTEALFTHQAIGQKEAKAKAVDLLETVGLKQAESLLKKYPHELSGGMRQRVMIAMAMLCHPKLMIADEPTTALDVTIQAQILRLLKKLNEEMDTAILFITHDLGVVRQICQRVMIMYAGRIVEEGTVDRIFQKPLHPYTKGLFASVPSFKEKKEKLISIAGHVPKPGAIRSGCQFAPRCPYQMAQCLEKDPALQSIEQNHRVACFLMEGGEDTESPTLASESADKTV
>NZ_CP043404.1|WP_149125840.1|639035_640013_-|ATP-binding-cassette-domain-containing-protein
MQVNQLTKRYDTAAFFSKHKQSTLALNQVSFHVKEGETLGIVGESGCGKSTLGKSLMRLTEPTSGSIQLKGQEITLLKERDMRSLRKDIQMIFQDPYASLNPRMKIKDILEEPLIVHQHGTKAKRRKRVKEMLHIVGFDPSYGERYAHQFSGGQRQRIGIARALITHPSLVIADEPVSALDVSVQAQILNLMLELQKTLSLTYLFISHDLGVVRYMSDRIAVMYAGRIVEMGPAEDVFHSPLHPYTSLLLKSIPHMDHVLEAQDVAAEETTMTERGGCPFYKRCPKRWEKCLKAVPALYEEAPGHAAACYLYQKEEHNEEDMVIQ
>NZ_CP043404.1|WP_149125845.1|648870_649716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIGGSTLSDIINDSAEKQSFYENVIRLHRKQWGKNRFLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGVPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALMMPETIGEAFKVDVMTPHHSDYNSVKLDKMNKGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEEAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDDIS
>NZ_CP043404.1|WP_041106375.1|649643_650012_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLRLTITFFEAKSKKGNAYQQFVQDIKETLDIQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP043404.1|WP_135033164.1|650008_650899_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDFIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAKQMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGERS
>NZ_CP043404.1|WP_149125846.1|650891_652124_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MPDRWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYSKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMYQVRPKPMMSEGQGFFGTGKTGRFSEELWPPVGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVENGSKKAKDQHLFSTESLIFPDDFKLEAGIELSTEESEGLKPFSGIHPIGGERRLAHIEEKPHVYQQDWTCPDAIKESLKNKPYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP043404.1|WP_149125847.1|652116_653928_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEESQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKTGAKKLQELGGTLIFPVFNESSAEPNNAPNKILGEISHEQPSSVARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVADLIEFYAVWTEMQTQEEAANASASPYHMALQEVEGLMAARKTLRDFKQNEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAKWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLDQNEQMKQTAIKYVKDVETYLENMNLKVAPIDWSEASLFYERRIEDYLEQCGLVGIARTKAKNDITQLLEKYFKGEYSKHHGQPIKPPTPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKARGIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQREFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTAWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTITECMIIALQLEEVSGHA
>NZ_CP043404.1|WP_149125848.1|653897_655205_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRESRKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDQDRPIRESAIRGHLRFWWRATRGAACKNVNELSKREADIFGHTEQASQIQVVTHYEKNEVKRNSKVFYKKRNHPFPRYVLSNMKDETPYLMKAQFSLNIRLSKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPSSSREWPTLSREFKVQAFPLSMISSWRSVIQTYETFRRRSNPYKKRGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDSGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPKIEALSLLGDGKPLPDVTDEQSIYPTATYSNNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNHKNKH
>NZ_CP043404.1|WP_149125849.1|655220_656063_-|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAVFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNLKEKGLEEWSKKIKQLTPKTTGIARMATGYFTSESNTQKRTRPLLILASNFKREGDHTISNKAAELAASFDFMLMKKSNEYQLKVPNEHEHLRWWSNELNCFKQEKRSKEEEKFLDENKLSGLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP043404.1|WP_029707333.1|656923_657145_-|hypothetical-protein
MSVHEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP043404.1|WP_149125850.1|657092_657695_-|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLRQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKAYQQLTDKQKMVLTQIYVEGQTMKEIADQFGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP043404.1|WP_073204399.1|657861_658026_+|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD

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Crispr_ID: NZ_CP043404_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043404_3

656310-656742

TypeIII

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACTCATATAGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	CRISPRCasFinder
ATTTCAATCCACGCACTCATATAGAGTGCGAC	CRT

6 spacers

PD-DExK,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

The CRISPR arrays of NZ_CP043404_3

>merge|NZ_CP043404|3|656310-656742|PILER-CR,CRISPRCasFinder,CRT
ATTTAAAATCACGCACTCATATAGAGTGCGACATGGGAAAATGCGGGTCAAAAGCCGCCACAAAGTATTTCAATCCACGCACTCATGTAGAGTGCGACGGCATTCCAAAAAGCAAACAAGCTTGCAGTAGATGATTTCAATCCACGCACTCATATAGAGTGCGACAAGAGCACAGCAAGGAATTGTTTGGCGTAAAGCCTATTTCAATCCACGCACTCATATAGAGTGCGACTGGGATTTTTCGCAGAACAGCCATTAATGGACGAATTTCAATCCACGCACTCATATAGAGTGCGACTTCATGACAGATATGGATGTGAACCTGTTCGACTGATTTAAATCCACGCACTTATATAGAGTGCGACTTGAAGTGCGCCAGAAGAAAATCAATGTGCAGCACAATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|3|3|656310-656742|PILER-CR
ATTTAAAATCACGCACTCATATAGAGTGCGAC	ATGGGAAAATGCGGGTCAAAAGCCGCCACAAAGT
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	GGCATTCCAAAAAGCAAACAAGCTTGCAGTAGATG
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AAGAGCACAGCAAGGAATTGTTTGGCGTAAAGCCT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TGGGATTTTTCGCAGAACAGCCATTAATGGACGA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TTCATGACAGATATGGATGTGAACCTGTTCGACTG
ATTTAAATCCACGCACTTATATAGAGTGCGAC	TTGAAGTGCGCCAGAAGAAAATCAATGTGCAGCACA
ATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|3|3|656310-656742|CRISPRCasFinder
ATTTAAAATCACGCACTCATATAGAGTGCGAC	ATGGGAAAATGCGGGTCAAAAGCCGCCACAAAGT
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	GGCATTCCAAAAAGCAAACAAGCTTGCAGTAGATG
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AAGAGCACAGCAAGGAATTGTTTGGCGTAAAGCCT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TGGGATTTTTCGCAGAACAGCCATTAATGGACGA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TTCATGACAGATATGGATGTGAACCTGTTCGACTG
ATTTAAATCCACGCACTTATATAGAGTGCGAC	TTGAAGTGCGCCAGAAGAAAATCAATGTGCAGCACA
ATTTCAATCCACGCACTCATATAGAGTGCGAC

>NZ_CP043404|3|3|656310-656742|CRT
ATTTAAAATCACGCACTCATATAGAGTGCGAC	ATGGGAAAATGCGGGTCAAAAGCCGCCACAAAGT
ATTTCAATCCACGCACTCATGTAGAGTGCGAC	GGCATTCCAAAAAGCAAACAAGCTTGCAGTAGATG
ATTTCAATCCACGCACTCATATAGAGTGCGAC	AAGAGCACAGCAAGGAATTGTTTGGCGTAAAGCCT
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TGGGATTTTTCGCAGAACAGCCATTAATGGACGA
ATTTCAATCCACGCACTCATATAGAGTGCGAC	TTCATGACAGATATGGATGTGAACCTGTTCGACTG
ATTTAAATCCACGCACTTATATAGAGTGCGAC	TTGAAGTGCGCCAGAAGAAAATCAATGTGCAGCACA
ATTTCAATCCACGCACTCATATAGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|224520
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl\|CDD\|187810
NZ_CP043404.1\|WP_024425219.1\|663788_664061_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NZ_CP043404.1\|WP_003217849.1\|664177_664327_+\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP043404.1\|WP_024425215.1\|658120_659284_+\|oxalate-decarboxylase-family-bicupin	unknown	unknown	gnl\|CDD\|274565
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP043404.1\|WP_073204393.1\|659353_659773_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372952
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493
NZ_CP043404.1\|WP_149125851.1\|659823_662418_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP043404.1\|WP_008360604.1\|664352_664526_+\|YpzG-family-protein	unknown	unknown	gnl\|CDD\|372924
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP043404.1\|WP_149125849.1\|655220_656063_-\|hypothetical-protein	PD-DExK	mkCas0090_PD-DExK_CAS-I:CAS-III	unknown
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|370625
NZ_CP043404.1\|WP_024425218.1\|662505_663489_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP043404.1\|WP_003217808.1\|645126_645351_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP043404.1\|WP_149125845.1\|648870_649716_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|224520	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.09743e-50
NZ_CP043404.1\|WP_149125847.1\|652116_653928_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.27378e-65
NZ_CP043404.1\|WP_041106375.1\|649643_650012_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	4.63316e-17
NZ_CP043404.1\|WP_149125848.1\|653897_655205_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.98413e-55
NZ_CP043404.1\|WP_003217849.1\|664177_664327_+\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	4.39954e-17
NZ_CP043404.1\|WP_024425215.1\|658120_659284_+\|oxalate-decarboxylase-family-bicupin	gnl\|CDD\|274565	TIGR03404, Oxalate_decarboxylase_OxdC, bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.	0
NZ_CP043404.1\|WP_024425218.1\|662505_663489_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.27761e-82
NZ_CP043404.1\|WP_073204393.1\|659353_659773_+\|hypothetical-protein	gnl\|CDD\|372952	pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents expression and activity of the YrvI sigma factor. It may function as an anti-sigma factor.	2.76247e-22
NZ_CP043404.1\|WP_029707333.1\|656923_657145_-\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	2.91578e-25
NZ_CP043404.1\|WP_149125851.1\|659823_662418_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP043404.1\|WP_008360604.1\|664352_664526_+\|YpzG-family-protein	gnl\|CDD\|372924	pfam14139, YpzG, YpzG-like protein. The YpzG-like protein family includes the B. subtilis YpzG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 50 amino acids in length. There is a conserved QVNG sequence motif.	1.68184e-12
NZ_CP043404.1\|WP_135033164.1\|650008_650899_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	2.00092e-80
NZ_CP043404.1\|WP_149125843.1\|645337_646438_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.88193e-148
NZ_CP043404.1\|WP_149125850.1\|657092_657695_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.13794e-10
NZ_CP043404.1\|WP_149125844.1\|646629_647610_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	8.63032e-44
NZ_CP043404.1\|WP_024425219.1\|663788_664061_-\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	2.03283e-41
NZ_CP043404.1\|WP_149125846.1\|650891_652124_-\|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl\|CDD\|370625	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3). CRISPR is a term for Clustered Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family, found in at least ten different archaeal and bacterial species, is represented by TM1793 from Thermotoga maritima.	3.65708e-68
NZ_CP043404.1\|WP_073204399.1\|657861_658026_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.92837e-11

>NZ_CP043404.1|WP_149125849.1|655220_656063_-|hypothetical-protein
MGETERTGKVEQLILENYQRLNSMISEEVDFASNHGGLTGDSREVMWLEFFRKIIPKKYSLAQGVIIIDSEGNHSNEVDIAVFDEQYTPYVFQHNSLKFIPIEAVAVAIECKSSNLKEKGLEEWSKKIKQLTPKTTGIARMATGYFTSESNTQKRTRPLLILASNFKREGDHTISNKAAELAASFDFMLMKKSNEYQLKVPNEHEHLRWWSNELNCFKQEKRSKEEEKFLDENKLSGLRIDGYDLLTLNFQLNQLLMLINNPMFFPHYAYAELFQKQITK
>NZ_CP043404.1|WP_149125848.1|653897_655205_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRESRKPKTNWHDVKHAIDTKIHEDQRLFKEPLTIHLVTPMFGGGPQSNSIDQDRPIRESAIRGHLRFWWRATRGAACKNVNELSKREADIFGHTEQASQIQVVTHYEKNEVKRNSKVFYKKRNHPFPRYVLSNMKDETPYLMKAQFSLNIRLSKKTTDFELIKKEVEAALWAWINFGGLGSRTRRGCGSLYCKQFSPYNKRTKSQLEKWFEQKLLEYDIQLPSSSREWPTLSREFKVQAFPLSMISSWRSVIQTYETFRRRSNPYKKRGRSCWPEADTIRLLTGKAKSGHHIPYPKEKPFKYQAFPRAQFGLPIQFRFAPKDSGKDPDPVTLLPKGKDRLASPLILKPLAINQKESVGMVMVLQQPKIEALSLLGDGKPLPDVTDEQSIYPTATYSNNPLQDESGRTHSSAIQAFLHSKEVQTFCQKNHKNKH
>NZ_CP043404.1|WP_149125847.1|652116_653928_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEESQKQTLMLFSIGPVQEFIAQARRTRDLWFGSFLLSELSKTGAKKLQELGGTLIFPVFNESSAEPNNAPNKILGEISHEQPSSVARQVKKAIYDKWKEYADFVRGIVDPYIQIGTWNRQVADLIEFYAVWTEMQTQEEAANASASPYHMALQEVEGLMAARKTLRDFKQNEPGALFGEPKSSLDGGRESVFQKQKTPQQVAQLAKWGIGEHESLDAISVIKRLSLHKHPSMTFPSVCDKAFAPYQNMLDQNEQMKQTAIKYVKDVETYLENMNLKVAPIDWSEASLFYERRIEDYLEQCGLVGIARTKAKNDITQLLEKYFKGEYSKHHGQPIKPPTPSPYYAFLMADGDKMGSQLRNIQHVESHIAFSKTLSTFASKARGIISKCEGTLIYGGGDDVMAYVPVHQCLEAAGKLQREFVSTMKAHQHSEIPPSISIGIAIVHMLEPLEEVRSMARQAEQYAKQERNSLAIHFQKRGGGDTMNISVSFQIDPVASIQEMTAWLKQSYFTSGFAYGLRELYQTYEQSSFRKQPEILDELIPLEIRRLAFKKKTEAKTEQETKEWIDQLIAKYIPKKNTLEELHTITECMIIALQLEEVSGHA
>NZ_CP043404.1|WP_149125846.1|650891_652124_-|type-III-B-CRISPR-module-associated-protein-Cmr3
MPDRWFHIQPLDPLLIRDARPFQSVPGIRARSLNDVPPSVVAGTLRTALAKKRQSIKHTTPLSYYSKSLVRGPLYRWHDHLYVPMPHDLELFDDEYGMYQVRPKPMMSEGQGFFGTGKTGRFSEELWPPVGAGARKKMKSPPAFVSLKWMVNWLTDAVDESQVKEALTEYQHMQKENHSFKKETPPAFIPALQRQERTQIEVENGSKKAKDQHLFSTESLIFPDDFKLEAGIELSTEESEGLKPFSGIHPIGGERRLAHIEEKPHVYQQDWTCPDAIKESLKNKPYVRMILATPAYFSKGWQPGWLDEQLMSKPLFDTNVRLKLVWASVPHWQPISGWSLANKDKGREKAIRRLVPAGSVYFFTVEEGDPAELAEKMWLQSVSDRNRRKEAFDREDGCGLALWGTWKPNE
>NZ_CP043404.1|WP_135033164.1|650008_650899_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKRSEMMEASRWFWIHCLSPLHIGAGEGVGVIDMPIQREKVTEWPIIPGSSIKGVQREHYRAKGQDTFVQKVFGTQGDQDGSAGAVVMTDGRLFSFPVASRYGTFGYVASPLILKRLARDAKALGVSLDIPDFIEESSTLVTMNSKLVENDELYLGEFQGAAKKSQQLTDFAKQMAKLLFDDKQSQTLWIERFVIVSDDVFQYIVTMNSEVTPRIRIDHETQTVSKGALWYEEYVPAEAIFYGLMWCDRVDGSNDLSVRHQLLNQLEKQMYLQLGGNTNVGKGRVSWRMTGGERS
>NZ_CP043404.1|WP_041106375.1|649643_650012_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MKLIQHHYAEKAYQHVMNAKTNEENFSNQYGQLCHRFASMILTNGLRLTITFFEAKSKKGNAYQQFVQDIKETLDIQGDWSASNRNYLIKSRQALSASVWLKRYAESILKVEQGAENVEDIQ
>NZ_CP043404.1|WP_149125845.1|648870_649716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MVKKICGIYFKGGTRGGKCGGHPMNLSLTLNKSKWEIGGSTLSDIINDSAEKQSFYENVIRLHRKQWGKNRFLYERFVEQYYTDTNPTCLVKSISPLVIGHGGEGVLETGLLLHPIYGVPYLPGTALKGVASHYAHSVLGENFPELKQGGSDYNTLFGTNERAGIIEFHDALMMPETIGEAFKVDVMTPHHSDYNSVKLDKMNKGGSVPAPRDDDSPTPIHFLTVVNGRFQLLLKTKKNLPEEAEWLELAKTILLGALEHEGIGAKTNAGYGRLKMDDDIS
>NZ_CP043404.1|WP_149125844.1|646629_647610_+|metal-dependent-hydrolase
MDTGTHVVMGISLGGLALLDPAVSADPHMAHAVMIATIAGSQAPDIDTVLKLKNNAVYIRNHRGFTHSIPAVLFWSLLIPAVIFPFVPGANLLHLWLWTLLAVVLHVFVDIFNAYGTQAIRPFSKKWVALGIINTFDPFIFFTHLVAIVVWAIGGHPGFTFITLYAVIFCYYIVRVIMQLQIKRQLRARFDEIEEIIISPTMKFRQWRIAVKCKSSFHVGRSMNGEVVILDTFNRVPVPDTEIMKIAKQDENISAFLSFSPVYRWEVDKYKDHYEVRFIDLRYRSKGHYPFVAICHIDMDHQIKNSYTGWIFSEEKLQKKLRLGSV
>NZ_CP043404.1|WP_149125843.1|645337_646438_-|A/G-specific-adenine-glycosylase
MKDIQEKLDRKDIAGFQHDLIDWYEKEQRTLPWRENQDPYRVWVSEVMLQQTRVDTVIPYFNRFMEQFPTVKDLALADEEKVMKAWEGLGYYSRVRNLQAAVKEVYESYDGIVPNTKEQFSKLKGVGPYTSGAVLSIAYNKPYPAVDGNVMRVISRILSIWDDIAKPKTRNIFEFAVDQLISREKPSEFNQGLMELGALICTPTSPACLICPVNMHCSAFEEGVQYELPVKSKKKKPTAKSMAAAVLFDDAGNLYIHKRPSTGLLANLWEFPNMETMKGRKTEKEQLIDFLKEEAGVQAELGDLEGTIQHVFTHLIWNISVFFGRVTSVSDDTKLKKVTTEEFEAYALPVSHQKIWKLALEQPSHI
>NZ_CP043404.1|WP_003217808.1|645126_645351_+|hypothetical-protein
MYVGRDLSQLGMMSKDQWKDTELAYFHHAFQQILPYLNEEGQSKYREIISEIEDRGGLHRNEADYTHGTTVKYD
>NZ_CP043404.1|WP_029707333.1|656923_657145_-|hypothetical-protein
MSVHEDKMTNGEMEELIETFTPMIKKKLQNTAYQEREDLEQELYIKLIEKIDRLIYQEGPGFWEFIVEYMTKL
>NZ_CP043404.1|WP_149125850.1|657092_657695_-|sigma-70-family-RNA-polymerase-sigma-factor
MDYRLLLKAKWKEIIDHPLIQQFLSNPKNEQLLRQVMEEPNEENAKKLDSEFKQFYQKIRIIKYISTMIRIFSVDFDKRVKKKQQRFPLILDHPDTQEVKDPVQTDTYEAVLFNQQDLGEHLQDQTLYKAYQQLTDKQKMVLTQIYVEGQTMKEIADQFGETRQNISNIHKKALNKLKEETGGDVRARRQNDQWRNGRTH
>NZ_CP043404.1|WP_073204399.1|657861_658026_+|YvrJ-family-protein
METFFSEEWLKQLGQAGFPAILTVYLLTRFERKFDELSKLIQRLVAAQKNDESD
>NZ_CP043404.1|WP_024425215.1|658120_659284_+|oxalate-decarboxylase-family-bicupin
MSEKQNGIPQPIRGEKGATVKIPRNLERDRQNPDMLTPPETDHGTVSNLKYSFSDTHNRLEKGGYAREVTVRELPISKSLASVNMRLKPGAIRELHWHKEAEWAYMIYGEARITSVDAEGRNFTEDVTEGDLWYFPSGLPHSIQALEPGAEFLLVFDDGSFSENSTFQVTDWLAHTPEEVVLKNFGMTKEQFDKLPEKEKYIFQKGIPGSLECDKVKTEQGEVPNSFKYELLKQEPITSSGGQVWIADSTNFKASKTIASALVKVDPGAIRELHWHPNTDEWQYFISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENTGDEPLYFLEIFKSDHYADISLNQWLAVTPKQLVLDHLDQGEDFLKLLDTEKHPVIAAPKKED
>NZ_CP043404.1|WP_073204393.1|659353_659773_+|hypothetical-protein
MQQSVHALWQGLKWLMAASAVCYIFLLFCVLFFHLTGAFYQSILSMLLFMGIYVVLGISFEHVEHVLMRIVRKCRSKKRSIVLYAISIHLLFIWGAVYLSDELVGGILLSTSEEILFALSLWLFHFLFDYATFSFEKEA
>NZ_CP043404.1|WP_149125851.1|659823_662418_-|YfhO-family-protein
MMKRRWIIIGMCLILALLGHSFFLYEYTQGRYMTGDGDGISQMLPFKKLLYDEYVKGNFFYSYQFGLGGGTYTQLGYYFTTSTVFMVTVAVVWLMNALHLIQSTDIHFWANAVIWLSVIKLTLILFIAYRVLLSMVQHRLSALTGAAIYGLSIVYFRHQTFWEFFTDSMMWLPLLVLGVERIFKTGKPAWFIASCSLMLINNFYFAYIHFIFLAIYLVFRYIIKLRSEEHGWKVFWTLAVSTLLSFGISAAFFVPSVYGFLHNIRPPYDQSIPWFDLHDHLLFTSRVYLLPVIFLICMFLVPLYRNRWFFMFTSISVLLIVFHYSPKMASVFNGFSAPQYRFEYILAFTVGAVVAITIKHFSQIEWKWKKRAVLGAWIVFLLAVILSERAKGNMDVVVFTGIGLLVISLFFLVIHAEKHQHLRLFSAVLIVVSLLTAGVYQQGYLSERSNIKSVSDTYLNSEAYAGHEQMKLIQQIQSRSSKDPLARIDWMNGVRNNTPLFEDFQGMSAYSSILNQHLLNFYWNDLQIDMGRESVSRYATMGDRANLYSLTYGKYYMRDNTMPYSPPAYFKPILESEHYKVYENTRPLPFARTTSTVYSEESLKDASALDREHAMLQGVILDKKGNAEIERTPNRVKDTNIHTEQAIYEHDVLDVYGETGGLNITLPDDMARAGDVYVSFYVKRTDRNEGFQLSVDNYVTSRKSNTSIYKTGVNEVTIRVPAEKILSIRVPKGTYELDQLRLYQEPYRILEKAYEKEKQDDGSQQVKLENNRFTISYDNKRGDDYMVLPVPYEKGWELTVNGQQTDIEQANYAFIGFPIEKGKNEIVLTYYPPYIRILALISLVSLIGAILYARRKHKKHHFLS
>NZ_CP043404.1|WP_024425218.1|662505_663489_-|glycosyltransferase-family-2-protein
MERELLSVIIPSYNEGENIRRIFEALEEEFRDFHYDFEIIFVNDGSKDNTLQYMRELSRKSAKVKYISFSRNFGKEAAILAGLEHAKGAAAIIMDADLQHPTYLIQDFVRGYEEGYHQVIAKRNRKGDSKLRSYLSSMYYKVMNKVVEVDLRDGVGDFRLISRQAIDALLQLKEGNRFSKGLFCWIGFEEKVIYYENVERQHGDTKWSLKKLFNYGIDGVISFNNRPLRICFYTGILILFLSLIYIVATFIQIVRTGIMVPGYFTLISAVLFLGGVQLLSLGVIGEYIGRIYYETKKRPHYLIQESNVMEQETSSKEQDRVLTQLFK
>NZ_CP043404.1|WP_024425219.1|663788_664061_-|hypothetical-protein
MEQYFERLTEQLMEKNNMLTYDEARTWVELLWSDFETTYAKAGRKYKGQETTERIVQEWIESYGAQLHLFQNKQSKANEHLQQNNRGLLH
>NZ_CP043404.1|WP_003217849.1|664177_664327_+|small,-acid-soluble-spore-protein-K
MRNKAKGFPNQVNHKFEGEPGATDAYASKRPNGETNTRPQERMRASGKR
>NZ_CP043404.1|WP_008360604.1|664352_664526_+|YpzG-family-protein
MSSNGKSYMADFVQLRTTAYPQPWANAKHSASQVNGETQQTQHDIVLQNNVRKQRSK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043404_1	1.4\|647912\|34\|NZ_CP043404\|CRT,CRISPRCasFinder	647912-647945	34	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	14456-14489	0	1.0
NZ_CP043404_1	1.8\|647913\|33\|NZ_CP043404\|PILER-CR	647913-647945	33	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	14456-14488	0	1.0
NZ_CP043404_3	3.4\|656542\|34\|NZ_CP043404\|PILER-CR,CRISPRCasFinder,CRT	656542-656575	34	NZ_CP011023	Bacillus pumilus strain SH-B9 plasmid pSHB9, complete sequence	68252-68285	1	0.971
NZ_CP043404_3	3.1\|656342\|34\|NZ_CP043404\|PILER-CR,CRISPRCasFinder,CRT	656342-656375	34	NZ_CP023039	Komagataeibacter saccharivorans strain CV1 plasmid unnamed3, complete sequence	71715-71748	7	0.794
NZ_CP043404_1	1.4\|647912\|34\|NZ_CP043404\|CRT,CRISPRCasFinder	647912-647945	34	NC_015861	Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence	4206-4239	9	0.735
NZ_CP043404_1	1.8\|647913\|33\|NZ_CP043404\|PILER-CR	647913-647945	33	NC_015861	Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence	4206-4238	9	0.727
NZ_CP043404_1	1.5\|647978\|33\|NZ_CP043404\|CRT,CRISPRCasFinder	647978-648010	33	AP014480	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S39-C236, * SEQUENCING IN PROGRESS *, 3 ordered pieces	5154-5186	10	0.697
NZ_CP043404_3	3.5\|656608\|35\|NZ_CP043404\|PILER-CR,CRISPRCasFinder,CRT	656608-656642	35	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	406794-406828	10	0.714

1. spacer 1.4|647912|34|NZ_CP043404|CRT,CRISPRCasFinder matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 0, identity: 1.0

gggggaggttttgatttgaataaaaaatggataa	CRISPR spacer
gggggaggttttgatttgaataaaaaatggataa	Protospacer
**********************************

2. spacer 1.8|647913|33|NZ_CP043404|PILER-CR matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 0, identity: 1.0

gggggaggttttgatttgaataaaaaatggata	CRISPR spacer
gggggaggttttgatttgaataaaaaatggata	Protospacer
*********************************

3. spacer 3.4|656542|34|NZ_CP043404|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011023 (Bacillus pumilus strain SH-B9 plasmid pSHB9, complete sequence) position: , mismatch: 1, identity: 0.971

tgggatttttcgcagaacagccattaatggacga	CRISPR spacer
taggatttttcgcagaacagccattaatggacga	Protospacer
*.********************************

4. spacer 3.1|656342|34|NZ_CP043404|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023039 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

atgggaa-aatgcgggtcaaaagccgccacaaagt	CRISPR spacer
-tggcagcaatgcggggcaaaagctgccacaacct	Protospacer
 *** *. ******** *******.*******  *

5. spacer 1.4|647912|34|NZ_CP043404|CRT,CRISPRCasFinder matches to NC_015861 (Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence) position: , mismatch: 9, identity: 0.735

gggggaggttttgatttgaataaaaaatggataa	CRISPR spacer
tgcggaggttttgatatggataaaaaagcaaaca	Protospacer
 * ************ **.********  .*  *

6. spacer 1.8|647913|33|NZ_CP043404|PILER-CR matches to NC_015861 (Lactococcus lactis subsp. lactis plasmid pIL3, complete sequence) position: , mismatch: 9, identity: 0.727

gggggaggttttgatttgaataaaaaatggata	CRISPR spacer
tgcggaggttttgatatggataaaaaagcaaac	Protospacer
 * ************ **.********  .*

7. spacer 1.5|647978|33|NZ_CP043404|CRT,CRISPRCasFinder matches to AP014480 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C12-MedDCM-OCT-S39-C236, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 10, identity: 0.697

cgaagcgccgtttgaatacttagctaaaaaggc	CRISPR spacer
aaataaaccgtttgaatacttaactacaaagta	Protospacer
 .* . .***************.*** ****

8. spacer 3.5|656608|35|NZ_CP043404|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 10, identity: 0.714

------ttcatgacagatatggatgtgaacctgttcgactg	CRISPR spacer
gcgcgctcc------gataaggacgtgaacctgttcgactt	Protospacer
      *.*      **** ***.****************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

896647 : 906543

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_025092624.1\|896647_898186_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.1e-76	51.8
WP_044335230.1\|898201_898771_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-30	39.5
WP_149125927.1\|898767_899808_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	2.0e-65	44.6
WP_133744813.1\|899904_901335_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.8e-51	32.5
WP_149125928.1\|901310_903542_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.5e-158	41.7
WP_024424510.1\|903525_904209_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003214349.1\|904205_904460_-	phosphoribosylformylglycinamidine synthase subunit PurS	M4QPE7	Synechococcus_phage	1.6e-05	34.6
WP_149125929.1\|904452_905175_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	4.5e-45	43.2
WP_008355754.1\|905247_906543_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-18	26.9

DBSCAN-SWA_2

1517993 : 1526913

Streptococcus_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149126079.1\|1517993_1519706_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.6e-54	38.3
WP_024426741.1\|1520377_1520854_-	nucleoside deaminase	NA	NA	NA	NA
WP_024426742.1\|1520933_1521488_+	cysteine hydrolase	NA	NA	NA	NA
WP_025092701.1\|1521533_1522835_+	LysM peptidoglycan-binding domain-containing protein	A0A2P1CIG4	Microbacterium_phage	1.2e-08	36.0
WP_024425759.1\|1522920_1523544_+	deoxynucleoside kinase	S5MMC6	Bacillus_phage	4.1e-18	28.9
WP_149126080.1\|1523540_1524200_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.4e-21	33.2
WP_149126081.1\|1524706_1525537_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-09	57.1
WP_024426746.1\|1525638_1526913_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.9e-97	50.6

DBSCAN-SWA_3

1814334 : 1867221

Tupanvirus(20.0%)

coat,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073207868.1\|1814334_1815015_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_034621912.1\|1815008_1815392_-\|holin	CidA/LrgA family holin-like protein	NA	NA	NA	NA
WP_024426436.1\|1815557_1816445_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149126153.1\|1816462_1817287_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_149126154.1\|1817273_1817942_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_024426433.1\|1818076_1818451_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_149126702.1\|1818476_1818821_-	DUF4288 domain-containing protein	NA	NA	NA	NA
WP_024423846.1\|1819134_1820676_-	cation acetate symporter	NA	NA	NA	NA
WP_149126155.1\|1820672_1820987_-	DUF485 domain-containing protein	NA	NA	NA	NA
WP_044331082.1\|1821094_1821763_-	streptomycin biosynthesis protein StrF	NA	NA	NA	NA
WP_024426430.1\|1821755_1822445_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_008345506.1\|1822745_1822886_-	DNA-binding anti-repressor SinI	NA	NA	NA	NA
WP_080652923.1\|1823294_1823726_+	GtrA family protein	NA	NA	NA	NA
WP_135031470.1\|1823753_1824011_+	hypothetical protein	NA	NA	NA	NA
WP_024423841.1\|1824045_1824891_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_149126156.1\|1825066_1826254_+	galactokinase	NA	NA	NA	NA
WP_149126157.1\|1826253_1827246_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	9.0e-52	38.0
WP_149126158.1\|1827281_1828793_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_024423837.1\|1828805_1829888_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_087977856.1\|1830405_1831362_+	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA
WP_024423835.1\|1831389_1833348_+	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA
WP_024423834.1\|1833347_1833965_+	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA
WP_012011667.1\|1833966_1834347_+	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA
WP_008345491.1\|1834424_1834688_-	hypothetical protein	NA	NA	NA	NA
WP_044331062.1\|1835165_1836377_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_039182366.1\|1836487_1837237_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
WP_080780785.1\|1837293_1838295_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_080780784.1\|1838306_1838534_-	hypothetical protein	NA	NA	NA	NA
WP_024423830.1\|1838615_1841042_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	1.1e-21	38.6
WP_024423829.1\|1841542_1841821_+	hypothetical protein	NA	NA	NA	NA
WP_024423828.1\|1841873_1842707_+	PRD domain-containing protein	NA	NA	NA	NA
WP_149126159.1\|1842963_1844352_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_149126160.1\|1844371_1845829_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA
WP_149126161.1\|1846736_1847879_+	amidohydrolase family protein	NA	NA	NA	NA
WP_149126162.1\|1848064_1849405_+	MFS transporter	NA	NA	NA	NA
WP_024423823.1\|1849623_1849878_+	hypothetical protein	NA	NA	NA	NA
WP_149126163.1\|1850034_1851108_+	peptidase	NA	NA	NA	NA
WP_034621888.1\|1851155_1851965_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_149126164.1\|1852090_1852405_-	general stress protein 17m	NA	NA	NA	NA
WP_149126165.1\|1852533_1853361_+	glycosyltransferase	NA	NA	NA	NA
WP_024426408.1\|1853357_1854038_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-48	44.3
WP_149126166.1\|1854071_1855430_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_024423816.1\|1855600_1855933_+	YwdI family protein	NA	NA	NA	NA
WP_024426406.1\|1855965_1857273_+	purine permease	NA	NA	NA	NA
WP_003215282.1\|1857343_1857715_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_024423814.1\|1857756_1858374_-	cupin domain-containing protein	NA	NA	NA	NA
WP_044331032.1\|1858504_1859035_-\|coat	spore coat protein GerQ	NA	NA	NA	NA
WP_044331030.1\|1859228_1859903_-	hypothetical protein	NA	NA	NA	NA
WP_103131846.1\|1860069_1860849_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_044331028.1\|1860855_1862268_+\|coat	spore coat protein	NA	NA	NA	NA
WP_044331026.1\|1862289_1863468_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	1.9e-24	28.6
WP_044331024.1\|1863464_1864340_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_044331022.1\|1864341_1865466_+\|coat	spore coat protein	A0A1B1IVE2	uncultured_Mediterranean_phage	4.9e-22	29.5
WP_044331019.1\|1865455_1866196_+	glycosyltransferase family protein	NA	NA	NA	NA
WP_024423806.1\|1866192_1867221_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

2169410 : 2178424

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149126249.1\|2169410_2170799_+	peptidase C40	A0A0A0RVE6	Bacillus_phage	2.8e-27	54.3
WP_024427675.1\|2171033_2171984_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.4e-86	53.6
WP_024423553.1\|2172341_2172806_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
WP_098677521.1\|2172809_2173733_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.5e-05	26.3
WP_024423551.1\|2173733_2174693_+	YvcK family protein	A1IMD5	Streptococcus_phage	3.8e-63	40.4
WP_024423550.1\|2174710_2175661_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.6e-50	37.5
WP_024423549.1\|2175687_2175945_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_149126250.1\|2175983_2176727_+	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_024423547.1\|2176780_2177269_-	ribonuclease	NA	NA	NA	NA
WP_149126251.1\|2177446_2178424_-	D-glycerate dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	1.9e-17	28.3

DBSCAN-SWA_5

2247465 : 2255393

Thermus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034621495.1\|2247465_2247867_-	transcriptional regulator	S6C481	Thermus_phage	1.7e-17	68.1
WP_024423483.1\|2247997_2248402_-	helix-turn-helix transcriptional regulator	S6C481	Thermus_phage	8.5e-17	44.2
WP_024426059.1\|2248556_2248790_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024423481.1\|2248819_2249110_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.2e-07	45.9
WP_003212746.1\|2249295_2249529_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_024423480.1\|2249653_2250400_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_024426057.1\|2250419_2252762_+	ribonuclease R	Q0GXV6	Lactococcus_phage	6.1e-91	40.5
WP_012011279.1\|2252901_2253372_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.1e-47	62.5
WP_056765775.1\|2254336_2254540_+	hypothetical protein	NA	NA	NA	NA
WP_056765776.1\|2254652_2255156_+	hypothetical protein	NA	NA	NA	NA
WP_034623886.1\|2255213_2255393_-	hypothetical protein	A0A2H4J4T3	uncultured_Caudovirales_phage	8.1e-20	79.7

DBSCAN-SWA_6

2485106 : 2520454

Bacillus_phage(33.33%)

portal,plate,terminase,holin,tail,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149126333.1\|2485106_2485631_+\|protease	DJ-1/PfpI/YhbO family deglycase/protease	NA	NA	NA	NA
WP_149126334.1\|2485704_2486697_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_149126335.1\|2486894_2487287_+	hypothetical protein	NA	NA	NA	NA
WP_149126336.1\|2487352_2488495_+	AI-2E family transporter	NA	NA	NA	NA
WP_048237982.1\|2488622_2489456_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_024423274.1\|2489627_2490101_+	hypothetical protein	NA	NA	NA	NA
WP_149126337.1\|2490136_2491132_-	biotin synthase BioB	NA	NA	NA	NA
WP_024423273.1\|2491291_2491645_-	hypothetical protein	NA	NA	NA	NA
WP_024425910.1\|2491862_2492240_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	6.1e-17	44.5
WP_034624558.1\|2492399_2492663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029706250.1\|2492789_2493032_+	hypothetical protein	NA	NA	NA	NA
WP_024423269.1\|2493083_2493485_+	hypothetical protein	NA	NA	NA	NA
WP_024423268.1\|2493481_2493688_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	2.6e-14	68.5
WP_024423267.1\|2493820_2494339_+	sigma-70 family RNA polymerase sigma factor	A0A2H4J6J3	uncultured_Caudovirales_phage	2.3e-35	46.9
WP_024425907.1\|2494491_2495136_+	helix-turn-helix domain-containing protein	A0A2P1JTW4	Anoxybacillus_phage	3.8e-43	44.7
WP_034668071.1\|2495132_2496446_+\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	7.8e-152	61.8
WP_024423264.1\|2496442_2497900_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	9.3e-138	52.5
WP_024423263.1\|2497938_2499027_+\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	3.4e-60	40.8
WP_024423262.1\|2499049_2499973_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	1.2e-109	64.6
WP_024423261.1\|2499986_2500370_+	DUF3199 family protein	NA	NA	NA	NA
WP_149126338.1\|2500366_2500723_+	DUF3599 family protein	NA	NA	NA	NA
WP_024423260.1\|2500719_2501217_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	4.1e-37	46.2
WP_024425901.1\|2501221_2501677_+	hypothetical protein	NA	NA	NA	NA
WP_024425900.1\|2501663_2501876_+	hypothetical protein	NA	NA	NA	NA
WP_024425899.1\|2501879_2503226_+\|portal	phage portal protein	A0A0A7S087	Clostridium_phage	1.6e-80	40.8
WP_024423257.1\|2503227_2503671_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	5.8e-27	46.5
WP_073207186.1\|2503955_2504045_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_012011040.1\|2504196_2504637_+\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	9.9e-11	36.8
WP_095357030.1\|2504678_2504816_+	hypothetical protein	NA	NA	NA	NA
WP_149126339.1\|2504816_2508980_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	3.4e-44	49.1
WP_149126340.1\|2508972_2509641_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2SUI2	Clostridium_phage	5.9e-23	30.1
WP_034624543.1\|2509652_2510663_+	hypothetical protein	H7BV96	unidentified_phage	1.0e-34	28.2
WP_024423253.1\|2510659_2510926_+	DUF2577 family protein	S6C459	Thermus_phage	2.1e-08	37.5
WP_024423252.1\|2510940_2511363_+	DUF2634 domain-containing protein	A0A1V0DZX2	Clostridioides_phage	4.6e-05	34.1
WP_024423251.1\|2511355_2512405_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.5e-68	43.2
WP_024423250.1\|2512388_2513312_+	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	9.4e-11	29.2
WP_024423249.1\|2513323_2513707_+	hypothetical protein	NA	NA	NA	NA
WP_024423248.1\|2513720_2514863_+	hypothetical protein	NA	NA	NA	NA
WP_024423247.1\|2514874_2515174_+	hypothetical protein	M4ZR44	Bacillus_phage	2.3e-11	48.2
WP_149126341.1\|2515195_2516581_+	hypothetical protein	A0A2H4J4R1	uncultured_Caudovirales_phage	1.7e-24	40.6
WP_024423245.1\|2516593_2516914_+	hypothetical protein	O64053	Bacillus_phage	1.4e-17	47.1
WP_080652903.1\|2516913_2517054_+	XkdX family protein	NA	NA	NA	NA
WP_024423244.1\|2517176_2518589_+	hypothetical protein	A0A1P8CWR7	Bacillus_phage	1.1e-18	31.7
WP_024423243.1\|2518591_2518939_+	hypothetical protein	M4ZR44	Bacillus_phage	1.1e-15	45.2
WP_149126342.1\|2518939_2519086_+	XkdX family protein	NA	NA	NA	NA
WP_149126708.1\|2519142_2519355_+	hypothetical protein	A0A290GDY2	Caldibacillus_phage	4.6e-14	58.0
WP_024423242.1\|2519367_2519631_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	3.5e-27	70.1
WP_149126343.1\|2519650_2520454_+	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	7.0e-63	69.7

DBSCAN-SWA_7

2776970 : 2840109

Bacillus_phage(11.11%)

coat,tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149126709.1\|2776970_2778542_-\|transposase	transposase	A0A1P8CWI7	Bacillus_phage	4.3e-40	42.2
WP_149126411.1\|2778781_2780074_+	DUF1668 domain-containing protein	NA	NA	NA	NA
WP_003216493.1\|2780332_2780476_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_149126412.1\|2780490_2781996_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	6.8e-35	24.1
WP_034621161.1\|2781992_2783177_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.9e-16	27.9
WP_024423191.1\|2783198_2783435_+	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
WP_025092477.1\|2783434_2784601_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
WP_024423190.1\|2784696_2785116_+	DUF1232 domain-containing protein	A0A2I7S9Z5	Vibrio_phage	1.5e-08	30.5
WP_095409219.1\|2785148_2786192_-	lactonase family protein	NA	NA	NA	NA
WP_024427825.1\|2786624_2787539_+	branched-chain-amino-acid transaminase	NA	NA	NA	NA
WP_025092480.1\|2787915_2789640_+	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.7e-61	30.1
WP_007501584.1\|2789636_2790155_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_024423187.1\|2790173_2791202_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_024423186.1\|2791188_2792742_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	7.1e-11	26.2
WP_149126413.1\|2792760_2793858_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_149126414.1\|2793898_2795314_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_024423183.1\|2795327_2795927_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_024423182.1\|2796052_2797060_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_024423181.1\|2797300_2798575_+	trigger factor	NA	NA	NA	NA
WP_024423180.1\|2798826_2800092_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.6e-148	64.0
WP_073206715.1\|2800228_2801890_+\|protease	ATP-dependent protease LonB	NA	NA	NA	NA
WP_024423178.1\|2802061_2804386_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	4.5e-179	43.5
WP_024423177.1\|2804382_2804970_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_024423176.1\|2805012_2805498_-	hypothetical protein	NA	NA	NA	NA
WP_149126710.1\|2805740_2807108_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_025092450.1\|2807115_2807946_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_025092449.1\|2807983_2808916_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_149126415.1\|2808912_2809704_+	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_029706177.1\|2809703_2810672_+	porphobilinogen synthase	NA	NA	NA	NA
WP_024427834.1\|2810699_2811992_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_149126416.1\|2812128_2813451_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_034621137.1\|2813488_2814520_+\|coat	spore coat protein YsxE	NA	NA	NA	NA
WP_003216497.1\|2814571_2814760_-	hypothetical protein	NA	NA	NA	NA
WP_073206700.1\|2815217_2817860_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.4e-160	41.6
WP_149126417.1\|2817925_2819230_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_034621130.1\|2819377_2820109_+	prepilin peptidase	NA	NA	NA	NA
WP_051582017.1\|2820074_2821283_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_024423165.1\|2821460_2822030_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_080708030.1\|2822062_2822752_+	JAB domain-containing protein	NA	NA	NA	NA
WP_149126418.1\|2822841_2823861_+	MreB/Mrl family cell shape determining protein	NA	NA	NA	NA
WP_024423163.1\|2823888_2824788_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_024423162.1\|2824784_2825303_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_024423161.1\|2825357_2826041_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_017358134.1\|2826043_2826847_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_149126419.1\|2826847_2827027_-	hypothetical protein	NA	NA	NA	NA
WP_034621125.1\|2827066_2827858_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_149126420.1\|2827850_2828720_+	stage IV sporulation protein FB	NA	NA	NA	NA
WP_003216781.1\|2828871_2829180_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_024427845.1\|2829194_2829533_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_003216586.1\|2829545_2829830_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_024423157.1\|2830086_2830680_+	sporulation protein	NA	NA	NA	NA
WP_024423156.1\|2830701_2831988_+	GTPase ObgE	NA	NA	NA	NA
WP_008342790.1\|2832043_2832487_+	ACT domain-containing protein	NA	NA	NA	NA
WP_024427846.1\|2832505_2833384_+	prephenate dehydratase	NA	NA	NA	NA
WP_149126421.1\|2835190_2836765_+	L-aspartate oxidase	NA	NA	NA	NA
WP_025092437.1\|2836746_2837610_+	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_025092436.1\|2837596_2838706_+	quinolinate synthase NadA	NA	NA	NA	NA
WP_149126422.1\|2838837_2840109_+\|coat	SafA/ExsA family spore coat assembly protein	NA	NA	NA	NA

DBSCAN-SWA_8

3160369 : 3166757

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024422851.1\|3160369_3161020_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.0e-40	40.3
WP_080652974.1\|3161031_3161658_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.2e-55	56.9
WP_029706184.1\|3161684_3162149_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.6e-43	68.3
WP_024422850.1\|3162262_3162616_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_149126503.1\|3162640_3163165_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_012010430.1\|3163255_3163348_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_024422848.1\|3163557_3164316_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-10	39.2
WP_024422847.1\|3164305_3164899_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.0e-15	36.0
WP_149126504.1\|3165012_3165492_+	DUF3907 family protein	NA	NA	NA	NA
WP_025093039.1\|3165605_3166757_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.2e-24	33.3

DBSCAN-SWA_9

3204863 : 3212573

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003215863.1\|3204863_3205142_+	non-specific DNA-binding protein Hbs	A7KV42	Bacillus_phage	5.6e-28	74.2
WP_003215789.1\|3205332_3205902_+	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	1.8e-49	57.3
WP_008344541.1\|3205926_3206157_+	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
WP_149126512.1\|3206272_3207040_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_024422810.1\|3207043_3207748_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_044333210.1\|3207772_3208735_+	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	2.9e-07	25.6
WP_133744151.1\|3208864_3209311_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.2e-26	41.6
WP_149126513.1\|3209456_3210236_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_024422806.1\|3210309_3211482_+	chorismate synthase	A0A291AU41	Pandoravirus	2.6e-42	35.4
WP_025093055.1\|3211481_3212573_+	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	2.8e-22	26.7

DBSCAN-SWA_10

3590368 : 3596633

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048239875.1\|3590368_3591328_-	stage V sporulation protein K	G3MAX6	Bacillus_virus	5.1e-52	39.6
WP_095408571.1\|3591648_3592407_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	1.3e-50	49.6
WP_024424084.1\|3592474_3593092_-	hypothetical protein	A0A127AYS1	Bacillus_phage	5.1e-45	45.3
WP_024424085.1\|3593180_3594161_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4JMU8	Bacillus_phage	3.2e-150	80.2
WP_044330425.1\|3594178_3596281_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	83.5
WP_008360380.1\|3596240_3596633_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	S5MA49	Bacillus_phage	6.1e-28	54.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043404

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection