CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043435	Campylobacter fetus subsp. venerealis NCTC 10354 chromosome, complete genome	2 crisprs	c2c9_V-U4,cas3,DEDDh,cas14j,cas6,csx23,cas10,csm3gr7,csx10gr5,csx19	1	5	1	0
NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	0 crisprs	cas14j,c2c9_V-U4	0	0	0	0

1. NZ_CP043435

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043435_1

• CRISPR_ID: NZ_CP043435_1
• CRISPR_location: 675565-677109
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 23 spacers

Consensus repeat of NZ_CP043435_1

Consensus_repeat	Method
GTTTGCTAATGACAATGTTTGTGTTGAAAC	PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CRT

spacers of NZ_CP043435_1

>1.1|675595|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT
>1.2|675661|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
>1.3|675727|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
>1.4|675793|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
>1.5|675858|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
>1.6|675924|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC
>1.7|675990|37|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT
>1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA
>1.9|676123|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
AATCCAACTTAACAAAAATGTTATATAAAATCACC
>1.10|676188|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
>1.11|676254|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC
>1.12|676320|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA
>1.13|676386|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG
>1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG
>1.15|676517|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TTTGAAGTGCACGACGCTATAACTAGAACACGGATC
>1.16|676583|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC
>1.17|676649|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
>1.18|676715|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
>1.19|676781|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
AATCCAACTTAACAAAAATGTTATATAAAATCACC
>1.20|676846|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
>1.21|676912|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
>1.22|676978|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
>1.23|677044|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT
CATCCTCCTTTTAATTTATTACATTTAAACAATTTA

CRISPR arrays and Neighbor proteins around NZ_CP043435_1

CRISPR arrays

The CRISPR arrays of NZ_CP043435_1

>merge|NZ_CP043435|1|675565-677109|PILER-CR,CRISPRCasFinder,CRT
GTTTGCTAATGACAATGTTTGTGTTGAAACCCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACTGTTTGCTAATGACAATGTTTGTGTTGAAACTATAAAGGGACCTACGAACTAAGCTAGAACCCTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACGTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGTGTTTGCTAATGACAATGTTTGTGTTGAAACCGGGGAGCAACGTTAGCAATCTCATTTCCGTCCATGTTTGCTAATGACAATGTTTGTGTTGAAACTGGGGATTCGATGAAATTTTTAACTATATAGCATTCGTTTGCTAATGACAATGTTTGTGTTGAAACTTTTTATAAGGCTCATTTTTGAAGATATTATGCTGCGTTTGCTAATGACAATGTTTGTGTTGAAACTCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACTGTTTGCTAATGACAATGTTTGTGTTGAAACCGCAAAAAGAGTTGAAATATATAGATAATAGGTTAAGTTTGCTAATGACAATGTTTGTGTTGAAACAATCCAACTTAACAAAAATGTTATATAAAATCACCGTTTGCTAATGACAATGTTTGTGTTGAAACTAAACTATTTCGTTATCCTGGTTGATACCGCTTAAAGTTTGCTAATGACAATGTTTGTGTTGAAACATGAGTTTAAATTTGATAGATCTGAAAAGATTATTCGTTTGCTAATGACAATGTTTGTGTTGAAACCTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTAGTTTGCTAATGACAATGTTTGTGTTGAAACTCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCGGTTTGCTAATGACAATGTTTGTGTTGAAACCCTTCTGCGATATATTTGATGAAAAAACAGAAAGGGTTTGCTAATGACAATGTTTGTGTTGAAACTTTGAAGTGCACGACGCTATAACTAGAACACGGATCGTTTGCTAATGACAATGTTTGTGTTGAAACTACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTCGTTTGCTAATGACAATGTTTGTGTTGAAACTGTATGTTGGTAGCTTTTATGGTTACTTTACATAACGTTTGCTAATGACAATGTTTGTGTTGAAACTCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAAGTTTGCTAATGACAATGTTTGTGTTGAAACAATCCAACTTAACAAAAATGTTATATAAAATCACCGTTTGCTAATGACAATGTTTGTGTTGAAACTAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTTGTTTGCTAATGACAATGTTTGTGTTGAAACAGAACTGTTTTAACCTCACTTCCATCAATCTCTTTTGTTTGCTAATGACAATGTTTGTGTTTAAACCAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCTGTTTGCTAATGACAATGTTTGTGTTGAAACCATCCTCCTTTTAATTTATTACATTTAAACAATTTAGTTTGCTAATGACAATGTTTGTGTTGAAAC

>NZ_CP043435|1|1|675565-677109|PILER-CR
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGAAGTGCACGACGCTATAACTAGAACACGGATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>NZ_CP043435|1|1|675565-677109|CRISPRCasFinder
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGAAGTGCACGACGCTATAACTAGAACACGGATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

>NZ_CP043435|1|1|675565-677109|CRT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCGTAAGCTACATTGTAAGCTAAGTCTTCAAAGACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TATAAAGGGACCTACGAACTAAGCTAGAACCCTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	GTGTAAGCAAGATGGCAAGAGACTATCTCCTGTTGT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGGGGAGCAACGTTAGCAATCTCATTTCCGTCCAT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGGGGATTCGATGAAATTTTTAACTATATAGCATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTTTATAAGGCTCATTTTTGAAGATATTATGCTGC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCAGAGCTAATAAGGGATTTAGAGCAGCTAAAAACT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CGCAAAAAGAGTTGAAATATATAGATAATAGGTTAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAACTATTTCGTTATCCTGGTTGATACCGCTTAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	ATGAGTTTAAATTTGATAGATCTGAAAAGATTATTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CTTGATACTTTTTGCTTGATTAGCTTTGCATTTTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCCCCGTTATCTACCTCTGGCGCCATGCTCTCTCCG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CCTTCTGCGATATATTTGATGAAAAAACAGAAAGG
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TTTGAAGTGCACGACGCTATAACTAGAACACGGATC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TACATCTTTTATCTCCTCTTTGTATTCCTTTAGCTC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TGTATGTTGGTAGCTTTTATGGTTACTTTACATAAC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TCACCAAAAAAACCAGGAATTAAATAAAAAGTAAAA
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AATCCAACTTAACAAAAATGTTATATAAAATCACC
GTTTGCTAATGACAATGTTTGTGTTGAAAC	TAAGCAAGGCTTATAAGCTCTTTACAATGCATTTTT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	AGAACTGTTTTAACCTCACTTCCATCAATCTCTTTT
GTTTGCTAATGACAATGTTTGTGTTTAAAC	CAGTATGCCATTTGATTCTAGTTCGCCTATAGCTCT
GTTTGCTAATGACAATGTTTGTGTTGAAAC	CATCCTCCTTTTAATTTATTACATTTAAACAATTTA
GTTTGCTAATGACAATGTTTGTGTTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043435.1|WP_011731910.1|682165_682990_+|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|236352
NZ_CP043435.1|WP_011731911.1|683034_683808_+|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl|CDD|235380
NZ_CP043435.1|WP_002849077.1|681392_682109_+|arginyltransferase	unknown	unknown	gnl|CDD|234939
NZ_CP043435.1|WP_010403934.1|670665_671361_+|methyltransferase	unknown	unknown	gnl|CDD|226608
NZ_CP043435.1|WP_002849042.1|666481_667705_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|143398
NZ_CP043435.1|WP_002849074.1|679717_681163_+|acetyl-CoA-carboxylase-subunit-A	unknown	unknown	gnl|CDD|169452
NZ_CP043435.1|WP_002849076.1|681169_681406_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_046037358.1|684862_686344_+|inorganic-phosphate-transporter	unknown	unknown	gnl|CDD|223383
NZ_CP043435.1|WP_002849046.1|671354_671726_+|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl|CDD|223799
NZ_CP043435.1|WP_024305374.1|668746_670669_+|hypothetical-protein	unknown	unknown	gnl|CDD|274008
NZ_CP043435.1|WP_002849081.1|683804_684728_+|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|179681
NZ_CP043435.1|WP_002849050.1|672993_673770_+|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl|CDD|234710
NZ_CP043435.1|WP_024305373.1|671701_672997_+|hypothetical-protein	unknown	unknown	gnl|CDD|274350
NZ_CP043435.1|WP_025370330.1|677119_677887_+|hypothetical-protein	unknown	unknown	gnl|CDD|213641
NZ_CP043435.1|WP_002849039.1|664976_666320_+|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl|CDD|366662
NZ_CP043435.1|WP_002849052.1|673769_674276_+|HIT-domain-containing-protein	unknown	unknown	gnl|CDD|238606
NZ_CP043435.1|WP_011731891.1|674272_675010_+|YaaA-family-protein	unknown	unknown	gnl|CDD|377151
NZ_CP043435.1|WP_002849060.1|678220_678427_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002849067.1|677862_678180_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002849044.1|667783_668737_+|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl|CDD|379355

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP043435.1|WP_011731910.1|682165_682990_+|adenylosuccinate-lyase	gnl|CDD|236352	PRK08937, PRK08937, adenylosuccinate lyase; Provisional.	2.29446e-18
NZ_CP043435.1|WP_011731911.1|683034_683808_+|pyridoxine-5'-phosphate-synthase	gnl|CDD|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	9.13382e-114
NZ_CP043435.1|WP_002849077.1|681392_682109_+|arginyltransferase	gnl|CDD|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	7.00248e-89
NZ_CP043435.1|WP_010403934.1|670665_671361_+|methyltransferase	gnl|CDD|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	5.72991e-53
NZ_CP043435.1|WP_002849042.1|666481_667705_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|143398	cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).	0
NZ_CP043435.1|WP_002849074.1|679717_681163_+|acetyl-CoA-carboxylase-subunit-A	gnl|CDD|169452	PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.	0
NZ_CP043435.1|WP_002849046.1|671354_671726_+|YkgJ-family-cysteine-cluster-protein	gnl|CDD|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.65843e-13
NZ_CP043435.1|WP_024305374.1|668746_670669_+|hypothetical-protein	gnl|CDD|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	9.18393e-08
NZ_CP043435.1|WP_002849081.1|683804_684728_+|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl|CDD|179681	PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional.	0
NZ_CP043435.1|WP_002849050.1|672993_673770_+|indole-3-glycerol-phosphate-synthase-TrpC	gnl|CDD|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	6.08927e-122
NZ_CP043435.1|WP_024305373.1|671701_672997_+|hypothetical-protein	gnl|CDD|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.35572e-08
NZ_CP043435.1|WP_025370330.1|677119_677887_+|hypothetical-protein	gnl|CDD|213641	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions].	0.000442902
NZ_CP043435.1|WP_002849039.1|664976_666320_+|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl|CDD|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP043435.1|WP_002849052.1|673769_674276_+|HIT-domain-containing-protein	gnl|CDD|238606	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.	3.923e-47
NZ_CP043435.1|WP_011731891.1|674272_675010_+|YaaA-family-protein	gnl|CDD|377151	pfam03883, H2O2_YaaD, Peroxide stress protein YaaA. YaaA is a key element of the stress response to H2O2. It acts by reducing the level of intracellular iron levels after peroxide stress, thereby attenuating the Fenton reaction and the DNA damage that this would cause. The molecular mechanism of action is not known.	3.02596e-45
NZ_CP043435.1|WP_046037358.1|684862_686344_+|inorganic-phosphate-transporter	gnl|CDD|223383	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism].	1.16118e-49
NZ_CP043435.1|WP_002849044.1|667783_668737_+|NAD(P)-binding-domain-containing-protein	gnl|CDD|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	1.83609e-57

Protein sequences

>NZ_CP043435.1|WP_011731891.1|674272_675010_+|YaaA-family-protein
MKILFSPSESKMSGGSRDASVNFSWVFPNLNDKRLEILEMYNSFLKKANKNELQALFGLKKDNELEYYSSDLFSRPLMKAILRYNGVAYEHLNYRNLDERSRKMIDENTIIFSNLYGVILAKDMIFDYKLKQGESIGGFRTEVFYKKYFSGVLDDFLDSDILDLRAGFYEKFYSLTKPYTTIKFLKNGKVVSHFAKAYRGIVLRCIALNQISSLDEFYNMQIPNLKINKIIKNRLKTEIVVDIIG
>NZ_CP043435.1|WP_002849052.1|673769_674276_+|HIT-domain-containing-protein
MEHEFSPWRAEYFKTRKDDGVTDHSCVFCDIAENIQNDEENFVLFRAKNCFAVMNRYPYTLGEFMIIPYIHTDNIENLDKNIWSEMSDLVQLGVGVLKESLNANGVNIGMNLGSAAGAGIAEHIHYHLVPRWSRDTNFITTIAYTRVHGVPFLDQYHTLKKAFQKIFK
>NZ_CP043435.1|WP_002849050.1|672993_673770_+|indole-3-glycerol-phosphate-synthase-TrpC
MILDEIISKTKINLENIKENLPLCRLENALTNSYIPRDVKQVLKQKNSINIIAEIKKASPSKGVIKEDFDPLKIAFEYEKAGVSAFSILTEPFYFQGSLEYIALVRRYTNTPILRKDFIVDIYQIAEARLYGADFILLIAKALDKFYLKTLFEYAKSLNLEVLMEIHDETDLEKALFVDADIIGINHRNLQTFDMDMELCIKLIPLIPSGKIIVAESGLYNNSELINLKKQGADAFLIGEHFMRQESIYNAVKDMKGE
>NZ_CP043435.1|WP_024305373.1|671701_672997_+|hypothetical-protein
MYWCRAALIFTLFLAGCADKQSVGAKKNETFFKYSDINTTIDLEAMKGFYLLGDAKSKDALEVFYMLYKTTKKPIFLKEALKIAFVIKDDRLDELITDAREILNADYDVIRIEIGYYILKSQIKDAKDLALNLIQKESDNSINHSILATIYLFNDEPIRALKEFKKAYEIEGSEENLLKLVDMLDNKLDRTNEAIRYLNNWIGENGCSKPVCFTLLNIYSAKGELDLMIEVYIKLYEAYEESDFLNRALEILLYKKDVISAKELLEKYSFNEPILMEIYAELKEFQKAYNVAQDLYNRSQNPEYMARMAIYKYEQSSKNISKFELDMVVKLFEGSVYALNSPIYFNYYGYLLIDYEIDLKKGLDIAKKAYILDPNSPYIIDSIAWGYFKLGECKEAKMWMDKIQSDTKFMKEDEAKAHKTAIDKCFNKGTK
>NZ_CP043435.1|WP_002849046.1|671354_671726_+|YkgJ-family-cysteine-cluster-protein
MLKEFGFDYCFDSSKCEVCGAKCCTGDSGYIWISEAEMESLSSHLKLSLPEFKKLFTYRVGVRFSLKEKEYNGAYACLFFDENNKNCSVYEFRPKQCRTFPFWDYFKKHFNELEKECIGVERL
>NZ_CP043435.1|WP_010403934.1|670665_671361_+|methyltransferase
MKLFQLKEGYRYNSDTLFLYDFISKNQIFGNVLDVGCGCGILGLLLKRDFINLNLSSIDIQEINSTITQLNADVNNLVAAVICDDFSKFKSEIKFDFIVSNPPFYNSQITKSENEHISISRYSSSLDPLSFFKSVNANLKPQGVLYFCYDARRVGEILPILSSLKLKLTKLRFVHSRISESSKLALFEAKKSSKSICGIYPPLIIFDENEFSGEVKEIFKKSDTKSEIYEC
>NZ_CP043435.1|WP_024305374.1|668746_670669_+|hypothetical-protein
MKFRKFAQILFLVGTIFFILGCETKDEKALNQDKLKFSDLSMAEQDRYISKDELDKLGSYLTLLNNRNIDINSDEIPSGSVDELRDKIAELIQKNRLLFADNEELAKKNLEIITKLREQNSLRESENKLISAKYLDSMNEVEKQHYKNINDLTKKINEVQKENIQSIKSYEQKIIGLENKIDELEKELSKKDINFNEKVSSATKDQLEKNKELSQKNSYLLEQTQVLKKQVDTLSKELDSKLADKKTQIDTLNQTILTKDNKINDLLASHTNEIIELQNKHSKALYDIKNELDRQKNDYFGELNLKNSELAKLNNDFKEYKLKKDEELKNAENRVLINYKKIETQRLNAIKSDYERIIFEQNRTIAAFEGKMINLELKFKKDLEAKDANYVNTLENLKQKALFLKNDEDRLRAEFDKNITSLKSQITLKNIQISELDSKIKELENEKNDIKKIQNYEILNNMITKLNAQNEELKNYAKKALDEAKKMVLEAENKAKEQNDKLKNYYEELIKNIKNQDNQPVLSDINVDSKRFLSEISCLSLDKSAKLDKDCENKLNDMIKKYGKSRIYEIKAVISDFKFLGDDKVGELKNVNLLNLKSTKDMLNAASKAINSKIKDPMLAYSKDVLLEQSGYGFVIKVYE
>NZ_CP043435.1|WP_002849044.1|667783_668737_+|NAD(P)-binding-domain-containing-protein
MENIYDVVVIGGGPFGIATVVEAKYNGFKNVLLLEKGDNHSQTIRKFYKDGKRVDKVYKGLDSQTHGNVEFFDGTKESTLNYFDNLLDNGKIDAVFNIEVESVKKDGDIFNIVTSKNTYKSKNVMIGIGRMGKPNKPEYKIPPSLTQIVNFNLNSCNCGENILVIGGGNSAAEYAIELSKCNTVTLCYRKEKFTRLNEINEAQVFEYFNDKKLNLKLGIDVIGLDNENGKVKVNFSNNSSEIYDRIIYAIGGSTPVDFLQKCGIELNKDGEPIVDEHLQTNTPRLFVGGDIASKNGGSIVVALNDAHTVIDYIIKSK
>NZ_CP043435.1|WP_002849042.1|666481_667705_-|glutamate-5-semialdehyde-dehydrogenase
MEKLLNNLKNSSKSLSILTQTQRENLIINIANEIMSAKDEILSANKIDLDLAQDLSSALKDRLKLTSKSIENLCNSIKNIANLKDVIGVIKDGWQTKSGLKIEKITIPLGNIATIYESRPNVTAEVAALCIKSANGCALKGGKEAKNTNLAIIKAIHKALQKCGLDKNCVVYLDIDRNEVKKLINMDKYLDLIVPRGGENLVKFVSQNATIPVLKHDKGLCHIYVDEFADLDKALSICVNAKCSRPGVCNAAETILVHEEVANEFIPNLKKSLDEFNVIIFGCKKTAKIIDCELANEQNYSTEYLDFKLNLKIVKNLEESLEHISEFSSGHSEAVISESYSICERFLSLVDSACVYANASTRFSDGGEFGFGAEIGISTNKLHARGPVGLNELTTYKYIIRANGQIR
>NZ_CP043435.1|WP_002849039.1|664976_666320_+|3-deoxy-7-phosphoheptulonate-synthase-class-II
MSKWNRDSWRDYNILQQPHYPDKNELKNAEDKLKSLPPLVFAGEVRNLKDELKNVTLGKSFLLQGGDCAESFSNFSANGIRDMFKIMLQMAIVLTFAGGCPVVKVGRVAGQFAKPRSSDFEDIDGVKLPSYRGDIINGFDFTEEARIPDPKRMIDAYYQSASTLNLLRAFSRGGLANLNEVHRWNLGFIKKAELDNKFEKLADELTGALKFMEACGVTTQNTPTLSETKLYTSHEALLLPYEEALTRVDSLTNEWYDCSAHMLWIGERTRGINDAHVHFLSGIKNPIGCKIGPDGKPGDIISLAGKLNPDNEPGRLNIIIRMGADKIEDRLPAILNYVKKEGLNILWSIDPMHGNTIKASSGFKTREFNNVMREVKSFFEIHRACGTIAGGVHLEMTGQDVTECVGGAFNVTEDSLGNRYETQCDPRLNADQALELAFLIADLVKKR
>NZ_CP043435.1|WP_025370330.1|677119_677887_+|hypothetical-protein
MAETLKEKFKGVLSANTSYFEGVSDHIISQAQNIARVNQSSKYGVKHYKVLARIDSRTSDICRSMNGRIIPASHIEAQSNNIQNAKDINEKKAAAIWRNEPFLGKILPSNFGLPPYHFRCRTELVPVWINEEEIDGVKMKNTSPLSKDEVVKHIDKTGVERYANKKTFNHSISSNKRKISSSDSVKALNSILKIAPHKDYQNRSVAISQNGYFMIFNGDYLYNIFKPSRNLEKYFKDSAVLNKVEIIKWKFSIFA
>NZ_CP043435.1|WP_002849067.1|677862_678180_+|hypothetical-protein
MEIFNICLAHGWAIESVKNGNFGENAKYDLFAQFDVFYGQIAWIYDICTPSDETIKECEKIAIFKQMCEFNVYISDDNDEGWTKKVNFTGTFIDALEYIKANFGK
>NZ_CP043435.1|WP_002849060.1|678220_678427_+|hypothetical-protein
MTIIEAFNKTKTLQNQNRNAVVKIVKKNYSGYDVQIEPVELTVIKNSLEMISQNANSFMANVNAKYGK
>NZ_CP043435.1|WP_002849074.1|679717_681163_+|acetyl-CoA-carboxylase-subunit-A
MIHKILIANRGEIAVRIVRACKDLHIKNVAIYTEPDRECLHVKVADEAYQIGKDPIKGYLDSKRIVEVAKACGADAIHPGYGFLSENYEFSKEVEDAGLIFIGPNSDIIRKMGNKNIARFLMKKNGIPVVPGTEKLNSETIEAIKNYAVRIGYPVILKASGGGGGRGIRVVWKEDELESSYESCKREAKAFFNNDEVFMEKYIEKPRHIEFQILGDNYGNLIHLCERDCSIQRRHQKVIEIAPCPTISEDLRKRMGVAAVAAAKAVGYTNAGTIEFLLDDYNNFYFMEMNTRIQVEHGVTEEITGVDLISRQIRIAAGEILDIEQNEVRPQGVSIEARITAENVWKNFAPSPGRITGYFPALGPGVRVDSHMYQDYVIPPFYDSLVAKLIVKGTSYDLAVSKLERALDEFKIEGVRTTLPFLLAISKRRHFRRGFFDTSYIEERLQDILENTQDHHQENKEEVIAAIAAAIKKVKEDRAKE
>NZ_CP043435.1|WP_002849076.1|681169_681406_+|hypothetical-protein
MNDFFDSLKNIKNELVKEQKSQEIKVPKKPKPNPNRDEFKDIFAEPNEIEMPDAKEHRLKDEFLEFIKHSDVKKLERD
>NZ_CP043435.1|WP_002849077.1|681392_682109_+|arginyltransferase
MREIDFCTLDTLCPYLEDRNSRTMYRYVSQCSFDYNSNLVKHGYRRFGSYFSKPICDGCDECKSIRIDAFNFKFTKSHRRIINKNSNTKIVVSKPYISQRHIDLYEKYHKFMHEKRGWEYYNLDFRRYYSVYVEGAGDFGYEIDYFVNDELVCVDLVDIVDDGISSIYCYWDIDFAHLSLGKFSLLNQITIALKNDLRWIYLGFYVKDCASLAYKGEYKPYETLKTYCDIDEKPIWEF
>NZ_CP043435.1|WP_011731910.1|682165_682990_+|adenylosuccinate-lyase
MQITQTLESITITTDDCDLFLNLSNKIRQSFANAIGNRDKVIIFYNENELVQRKYFLKLIGKIYANSVGKGIDFLLTHHKNIKLVYKKPNSLQILINVDVKFENSRVVLDLKNSEELFTKYLIRGLGDTRHEYFESKNILVISPKTTEDVELLDNILNFREHLKYIVNFNYDKKAYDEFKKRAKILTSKAYIRRFSMLANLLEEHFETLGCKATDDFETVRTNYLNLTKVYHPDKHAGKPNEVQKSYIDKFQKIGLAYEALKPYFKEQKSFISA
>NZ_CP043435.1|WP_011731911.1|683034_683808_+|pyridoxine-5'-phosphate-synthase
MKLGVNIDHVAVLREARAVNDPQIIHAMFEAVSGGADQITIHLREDRRHINEDDVKNIINLSPIPVNLECSINSEIIDIVCELKPHRATIVPEKREELTTEGGLSLDSLNLKNVISKLNDNDIKVSLFINPKKNDVIMSKELGATCVELHTGAYANTFLMLNSNLNHTKYKIDNLNLKRGELEILLNSELTRIKEAANISTNLGLEVAAGHGLNYQNVTAISSIKDIFELNIGQSIVAKSVFVGLKNAVKEMMELVK
>NZ_CP043435.1|WP_002849081.1|683804_684728_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MSLPKIAISVGDINGVGIEIALKSHDEIKNICSPIYFINNELLNSAANILKFTVPNDFEIFECGSSFNIKPGRVSKKSGKFSFVSFENAILYTQNKRAQALVTMPINKESWKKAGVPYVGHTDALGKYFGKNAIMMLGCEELFVALYTDHLALKDVSAKIKAKNLALFLVDFYNSSKFENIGVLGFNPHASDNETIGGKEEKEIIKAIKSANNRLKKEVFTGPLVSDAAFTKSSLKRCNRLVSMYHDVGLAPLKALYFDKSINVSLNLPIVRTSVDHGTAFDIAYKGKAETKSYIEAIKFAIKLCDY
>NZ_CP043435.1|WP_046037358.1|684862_686344_+|inorganic-phosphate-transporter
MWGYNYIPSNHLLLFILASIFGLFMAFNIGGNDVANSFGTSVGAKTLTLKQALIIAAVFELSGAVFAGAEVTNTIRSGIVSLPRGDVNPMVFVIIMISALFSSGAWLFIATKKGLPVSTTHSIVGGIVGAGMMMGFIYYNGSKTFDMVQWGEIGRIALSWVISPVMGGVMAYLIFGYIKSKIIIPSSRIQSEIKSLKRARKTYKDQYIKELSNKSEAEQIKELRRIAIIDEDECEGENCDFRDKIKAMKEQEKNIDGMVFMRTHIPMVAGVAAMIIAGSMLFKGLKHMDFNLSIIQTIWIIFVIGIAAYLASFAIVNLMKKDNPQKGINRIFGWFQIFTASSFAFSHGANDIANAVGPFAAILDVLKNNTINETTPIPGIAMATFGIALVVGLWFLGKEVIATVGTKLAEILPTTGFSAELAASIVILIATKMGLPISSTHVLIGAVLGIGVYNRNANWGMLKPIGLAWIITLPISMIGSAIGFLVIKNIMGL

Crispr_ID: NZ_CP043435_2

• CRISPR_ID: NZ_CP043435_2
• CRISPR_location: 1822536-1822670
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP043435_2

Consensus_repeat	Method
ATTTTATCATTTATGATGATCTAGGAAATAATATAGAAAATA	CRISPRCasFinder

spacers of NZ_CP043435_2

>2.1|1822578|51|NZ_CP043435|CRISPRCasFinder
TTGAAAAAGAAATAGTTGATAACAAAAGAAATTTTTTTAGTTTTAATGATG

CRISPR arrays and Neighbor proteins around NZ_CP043435_2

CRISPR arrays

The CRISPR arrays of NZ_CP043435_2

>merge|NZ_CP043435|2|1822536-1822670|CRISPRCasFinder
ATTTTATCATTTATGATGATCTAGGAAATAATATAGAAAATATTGAAAAAGAAATAGTTGATAACAAAAGAAATTTTTTTAGTTTTAATGATGATTTTATCATTTATGATGATCTAGGAAATAATATAGAAAATA

>NZ_CP043435|2|2|1822536-1822670|CRISPRCasFinder
ATTTTATCATTTATGATGATCTAGGAAATAATATAGAAAATA	TTGAAAAAGAAATAGTTGATAACAAAAGAAATTTTTTTAGTTTTAATGATG
ATTTTATCATTTATGATGATCTAGGAAATAATATAGAAAATA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043435.1|WP_002850911.1|1817533_1818361_+|DUF1738-domain-containing-protein	unknown	unknown	gnl|CDD|377992
NZ_CP043435.1|WP_002850902.1|1814763_1815198_+|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	gnl|CDD|368576
NZ_CP043435.1|WP_002850907.1|1815190_1817110_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl|CDD|226036
NZ_CP043435.1|WP_035148521.1|1825030_1826029_+|restriction-endonuclease-EcoRI-subunit-M	unknown	unknown	gnl|CDD|372662
NZ_CP043435.1|WP_024305491.1|1826075_1826354_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_024305357.1|1827708_1828275_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_011732334.1|1831954_1832149_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002847774.1|1828708_1829512_-|replication-initiation-protein	unknown	unknown	gnl|CDD|376444
NZ_CP043435.1|WP_035148343.1|1826824_1827472_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|222854
NZ_CP043435.1|WP_002850914.1|1818421_1818697_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002850920.1|1820532_1822473_+|type-IA-DNA-topoisomerase	unknown	unknown	gnl|CDD|223624
NZ_CP043435.1|WP_002850918.1|1819963_1820551_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|379235
NZ_CP043435.1|WP_002847783.1|1832236_1834231_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NZ_CP043435.1|WP_002850900.1|1813822_1814767_+|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl|CDD|274301
NZ_CP043435.1|WP_024305372.1|1813599_1813821_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002850910.1|1817297_1817474_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_002847781.1|1831208_1831955_+|HugZ-family-heme-oxygenase	unknown	unknown	gnl|CDD|200360
NZ_CP043435.1|WP_002850916.1|1818745_1819945_+|hypothetical-protein	unknown	unknown	gnl|CDD|377390
NZ_CP043435.1|WP_158004709.1|1828362_1828515_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP043435.1|WP_024305358.1|1829563_1831111_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|236707

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP043435.1|WP_002850911.1|1817533_1818361_+|DUF1738-domain-containing-protein	gnl|CDD|377992	pfam08401, DUF1738, Domain of unknown function (DUF1738). This region is found in a number of bacterial hypothetical proteins. Some members are annotated as being similar to replication primases, and in fact this region is often found together with the Toprim domain (pfam01751).	0.00766572
NZ_CP043435.1|WP_002850902.1|1814763_1815198_+|plasmid-mobilization-relaxosome-protein-MobC	gnl|CDD|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	0.00151096
NZ_CP043435.1|WP_002850907.1|1815190_1817110_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl|CDD|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	1.18638e-62
NZ_CP043435.1|WP_002847774.1|1828708_1829512_-|replication-initiation-protein	gnl|CDD|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	6.29496e-13
NZ_CP043435.1|WP_035148343.1|1826824_1827472_+|AAA-family-ATPase	gnl|CDD|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	1.7133e-39
NZ_CP043435.1|WP_002850920.1|1820532_1822473_+|type-IA-DNA-topoisomerase	gnl|CDD|223624	COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair].	1.1352e-137
NZ_CP043435.1|WP_002850918.1|1819963_1820551_+|AAA-family-ATPase	gnl|CDD|379235	pfam13521, AAA_28, AAA domain.	1.73817e-08
NZ_CP043435.1|WP_002847783.1|1832236_1834231_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.40843e-53
NZ_CP043435.1|WP_002850900.1|1813822_1814767_+|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl|CDD|274301	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.	1.26229e-53
NZ_CP043435.1|WP_035148521.1|1825030_1826029_+|restriction-endonuclease-EcoRI-subunit-M	gnl|CDD|372662	pfam13651, EcoRI_methylase, Adenine-specific methyltransferase EcoRI. This methylase recognizes the double-stranded sequence GAATTC, causes specific methylation on A-3 on both strands, and protects the DNA from cleavage by the EcoRI endonuclease.	6.09975e-92
NZ_CP043435.1|WP_002847781.1|1831208_1831955_+|HugZ-family-heme-oxygenase	gnl|CDD|200360	TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family. Members of this protein family are HugZ, a class of heme oxygenase that belongs to the PPOX family (pfam01243) and lacks homology to the HmuO family (pfam01126). Characterized members of this family include HP0318 from Helicobacter pylori and CJ1613c from Campylobacter jejuni. This enzyme releases iron during the conversion of heme to biliverdin.	3.38351e-122
NZ_CP043435.1|WP_002850916.1|1818745_1819945_+|hypothetical-protein	gnl|CDD|377390	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein.	0.000267097
NZ_CP043435.1|WP_024305358.1|1829563_1831111_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|236707	PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional.	2.79407e-165

Protein sequences

>NZ_CP043435.1|WP_002850920.1|1820532_1822473_+|type-IA-DNA-topoisomerase
MQNTIIIIESPNKCDKIEHITGAKVYATKGHFKELTNQIVADYQSYEPIFDFKGESKSRINAMFNDCKGKDVIIATDPDREGYGIGYMVYDTIKNIAKSVKRAEFHEITESGIKKGLESAVPFASSNLKEFDSFKARAVGDKLVGFIMSPTYINKLNDKNISVGRVQTPALALIVKRELEIKAFNENKANAKIDYKIKAKLRTRDGIEFNALNDNIFVSKDEANAKISDLNGFNAKVYQIDTKETQIKPKLPFRTSQLQEIANKKLLFSPDKTMSIAQKLFEKGLITYHRTDSNSLSNEFIDEVGAKFGDEEWYEKREYKAGAQSQAEAHEAIRITHVHNFISIDEMALTDDDKRLYELIYLNSIQSQAKNAINENTIYDIDIKTLSFKTKTSKCIYKGFKGALKEEIEDDEDKDKEILEISLNLKQGDEVELMGFELQEVKKQPPQHYKESNFISLLEKEGIGRPSTYATFLPTLLKREYVTIETKGKNNNIVATNKGIKFIENIKQDDDWITQSEFTKQMESVLDEISSGKVSYLDFIKPLHEKMGFKELNNSQTNPPSEKQLEWAKNIAQNLKISLPNGIENSWKICSDFIEKNKDKVVTPPTDKQIELAKKLSKDKGMALPKDYDTNLKICKEFIDKAIKKK
>NZ_CP043435.1|WP_002850918.1|1819963_1820551_+|AAA-family-ATPase
MNKLVINIYGSPGAGKSTLAKNLKKYMREKRIDVGLISEFATELIENNQKEKLKDQPYVTKGQMLNITRVLKKHDIAISDSPIELGKFYCDPRDEQRTNELIKKCKNMYKSINFFLKLDEQAKQDYTMERRVHTYAQSKKLQEEMLSSLILNDKTSIIIYRSTPIKEIFKMIEKSKQWNKHQNQNKGLELCKTQS
>NZ_CP043435.1|WP_002850916.1|1818745_1819945_+|hypothetical-protein
MAQTQVAKDLLTDSNWINKTQNIIQENVMSLFEKFYQGAHDLVYSTATTTIVILIVSLWLLNRLKNGYPTRNEIFVAVKYIIQLCFIFAILSSFDAYQGVLYALTIPENVIITILSSIFEGRDFGAIVTESANRVDNIRALMWNYGTTEYLKTQAWSFLGISFNGVMDYLGAGIITALSMIPFWIFYIVFFLLLVGITIVIFFSKFMAFLILSTLPLVIPFLIIPRFLPYLWSWYKLYLSYAIIAPLAFIALNLAINPILELENYQNYISELFVKQFEYLITGSITCISALFLLKKIPSWINAVLGTQMESGSGGVVGGVVAGAVASKTLLGGLARKATGGSFVGGALSSLGAASGANVAGQIASASIGAGANVAKDIGRGIGKTYEAYKKFKGGYVAP
>NZ_CP043435.1|WP_002850914.1|1818421_1818697_+|hypothetical-protein
MLNEFLNFLGFNKAVCKKQLHTDNTDIKENVEMQEYIVEMQSPDFKEETTTETVIKDGKKIEIQKIKTTEPLNNGKTLITTKIYKKDITRM
>NZ_CP043435.1|WP_002850911.1|1817533_1818361_+|DUF1738-domain-containing-protein
MEQVRKSWEQMDNAEKKESFDKYMKFKLFEAHKTGKADWQKDMSKEEVDNTMPYNAKTGNTYSRETNMLLRAEMAIKGYDKAQFVTMEQGNAMGGVLKLKHDEQTGEVVKTKNGKDARVDGVKMLYIADHELRPKLDKDGKEVTAVVKDKDGNVKYDQETGQPMTYVVKEKIPIKPRLETKTLYHVSQFDGLDESKIKDRDLTAVTHYREQSKNQDFEVKISYGKTLGISGNLEKQLDNLTLAQIKGVDYYNPAVKVEMTKQKAQTKEQNKGMER
>NZ_CP043435.1|WP_002850910.1|1817297_1817474_+|hypothetical-protein
MTYQEKLEQEKAYKEYEKHLAEQFAQSEDGEFEISDSECKGLEYLKQAHQEIGSTDKN
>NZ_CP043435.1|WP_002850907.1|1815190_1817110_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MDDTQKFSTKKWIIIFISSLIMGVLAYLAMVKVIFNPDLVNVPAVAIKILNNIGSPMLKLKAYVALFALVAPFLVVVAWWLMPYFSDNENYGSARFATPDDFKKMSINYKNGLVLGCLNIDSENPKFLRATRPLATLVVAPPGSGKTAGMIIPNLLSIPNSSVTLDIKGELYQKTAGYRQKYFKNEIQLFSPFSWDNTLFFNPFDYSIVKDMEYIRIKKLADQIANTIFVAEKEKENDHWVLSAKTLFVFFAEYFMQKNKHTTLGELAQAPKADYFDYLDEKFGEEAMKEIDEDNPEAPRERDYDVDTFKIWLKQTANDTSIDESTRNQARAYAKAAENEFASIKSTYDTFMKVFSHPQVASATSKMSFAFEDLREKRISMYVVIQTEDMEILAPLIRIFIETLFKKLMSGKENSDPDKFIYCFLDEFVRFGKMPFLLEAPALCRSYGLLPVFVTQAYEQIKKYYGEDDMNIVKNNSGYHVIFGMNSEKDAKDTSELIGDYTNIKISKSQGNMDLFKSNISKSKEAKRLVTAQDLKNQDSNDIYILVSKFFKMPIKAKVPYWFKIVQFKGANEIEVKAIAQKEQTNTHKPQDTNILQNSPATAQQNSQKTNESKVEVADMDKQQRDELLKALKIKVDRE
>NZ_CP043435.1|WP_002850902.1|1814763_1815198_+|plasmid-mobilization-relaxosome-protein-MobC
MKKTRHHIYLTEADDRILRKLSDKQNQSRSAIVRKLLQTQKYKDNLKEIETNNRIIGGYLKEFSHIGTNINQIAYHLNANITDHEEAKTDFEKNIVKLMQIIKELNEKIDTLKIKINVPHIKTPSNIKERDRMEEYEIKRKENG
>NZ_CP043435.1|WP_002850900.1|1813822_1814767_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MAESIILNNILGVLKPYLNLNANELIFNKPCEINIDYGDHWEIVQDPKLDARFLNSFLVELATRRNQRFDESHCHLSCELPSPFLRYRVQAQHKSSLFNSEIAICIRIPSKEIYPLESFILSDKCIKDGWNYDKIKELIHKKKNVLLSGGTGSGKTSFLNSLMGEIDPNERVVTIEDSQELRVENINKTQLAVPKIATEIYSYQVAIDNAMRLRPDRLFLGEIDIRNTFSFLRVNNTGHAGNLSTLHANSPRDAIKAIKTNVILGGGLSNVDDGMIDSLIITAIDYIIQITRVKNKRVVTDILNLKEDMGKIVA
>NZ_CP043435.1|WP_024305372.1|1813599_1813821_+|hypothetical-protein
MEYEIIKEQINAELQNKKTNDKLLEKIAIQLKKIEKAETVYLKEKAKLENLVAQKQNLSNGVTTKQVEQDKEE
>NZ_CP043435.1|WP_035148521.1|1825030_1826029_+|restriction-endonuclease-EcoRI-subunit-M
MNHKNQLNQETNWMSNKEKKPNIYFMKAKYEIDDEFYTSYHEIKKELDDYKSHFKGKIVVCPCNDSRKSNFYRYFSLNFKALELKKLITTTFDISDPNSKGTKIEITNDSASETQLQGNGDFRSDEVKEIIAQGDIIVTNPPFSLFRDLIDIVESYNKKFLIVGGTYSITYKKIFELYEKGKIWLRNHQVCIFTRPNGTKKRFSNISWFTNLKSIKHLEPIKLTKRYKNNEHKYPEYDNYKVIEVTSYKDIPIDYYGIIGVPLTFFLRHNPAQFNILGCDFQIKEKYPELVKWDYKENNTKSAVLNGQEMFTRIIVQRKSGLMPRIRLQNQL
>NZ_CP043435.1|WP_024305491.1|1826075_1826354_+|hypothetical-protein
MKFEELEFSGLPDNFLCQKVCEIYKITNKELSDKLGIEIEVLNSLQDNDVRLPKSAKVALELMHIIDIWYNTDLIFKERVVKDETKQEIKTI
>NZ_CP043435.1|WP_035148343.1|1826824_1827472_+|AAA-family-ATPase
MIVSICNEKGGSGKSTLATNIAINQSLSKNELPLLIDTDPQKSIATFLNIRNEENNPKVFDFTYKYGENLKEFLQNYNSNKDVIIDTGGRDSREMRIAIALSDMVIIPTIPSQFDVSVLDKMVNIIKMAKEQNEKLVAYIVINRASTNPFLYKKIESLRNFIEELEQDYIKLSQTIIYERERYKVATQLGLGVVEMKDGNKAEQEIRDLCNEICT
>NZ_CP043435.1|WP_024305357.1|1827708_1828275_+|hypothetical-protein
MNFKKTTNSIENLDAFIDGADTQKDTSIDKKVSVVTKISKELSNKIKLKYPKMPLTKYIEQALMVKIPHINEDILLTICQQAEWFNTSIADFVRYKMGLMEAPEPNELNKNEEKLENKILYVSNDNKKIIKRNAENIGLSLYRYSEIKIKVTYELKDIFTFEELMQFKAEAINYDLELDEYIAMRIRG
>NZ_CP043435.1|WP_158004709.1|1828362_1828515_-|hypothetical-protein
MIEESNKTIEQIARESLHSLEMTFENFAIFGVCSLMIIGIVTALILSSTR
>NZ_CP043435.1|WP_002847774.1|1828708_1829512_-|replication-initiation-protein
MSDFSFYFEKGEFVLEVSKKNFKKSDGSLVFKNKMNSILFPVNFTARDYDIFFTICWFAKQKGYVENRGFIEMPYSEICRFMPSGLNKTRFNDEVKNFRSKVLGQNGAAIYRSVEITKDDEITTVGVFFTDIKIFRNKQSLSFRLNPIALDVLFSTLKFMRIDLNDFVSIRGKFAKTLYRLLHQYDNIKADKDGFKCVNFSRDDFEKFMSTPMTYNVTDLDRFVIKPSISELDESYFKKIIFEKKIADGSKKNVIGYSFKFILKDAS
>NZ_CP043435.1|WP_024305358.1|1829563_1831111_+|ATP-binding-cassette-domain-containing-protein
MLKLKNKNLILSAITLLSVFYSALNLAVLAFINRYLLNITSGEYGLILYFIILLLLFFIASLAFRYTISLASQNYIYDMRLSIIKRILDTDYHHTRQIGRAKLIALLSSDIASITNGFVRIPEILQGGLVAIVSFFYILYLSPILAFSVFIWLGFGAILCLYFIKKLYNLFKQHRKNEDRLYKNYETSIDAHKEFSLNLKRAADFFNLKFRLNVQDMRKNMLSIDFYQSLVSNWVSMMTLGAVGLVIYLSLGFELLDMAGAVTISIIILFLRAPLMMVLFAYPSIIKSKVAAQKIKSLELAAYKEEFDTYKSFDNWQRIELRNISFSYENKLILDNINMRLDRGECLFLIGENGSGKSTLFLILAGLLKPSSGEIYIDDVKIDSSNIQIYKNTISAVFSEFYLFSDIENDAKKWFELLEFRAPNDSQIDPQNLSQGQKKRLALINALLENRNILLLDEWAADQDPHFRAKFYTEILKLFKQQKITVFAISHDDRYFKYADRIYELIDRKLINYLS
>NZ_CP043435.1|WP_002847781.1|1831208_1831955_+|HugZ-family-heme-oxygenase
MDAKRKAIEHMNSDHMDTLIMLCKHFGAVQNPTNVRLDSIDEDGMDIACDQLLVRVAFLKKAEQNGEGFKTAIIDLMSSLDIKEGIAAVSKDMIDFIDSFNSVLISSLNGDHCVCSYAPVVRDNNDFYILISEVSEHFKSIKENSDKISIMFLEDESKAKTVFARKRASFRSKAIFLDDKKESLFSKFESKFKSESAIKMIKNMSDFHIIKIEINKGRFVKGFGAAYDTDGFEIIQRAHGANPHNNKR
>NZ_CP043435.1|WP_011732334.1|1831954_1832149_+|hypothetical-protein
MKNVKPKETGKLFMSYFSLLITVLWVILEKPVCLMRAKNSNLKFDAKFDKFTKYIIFQKQKYKL
>NZ_CP043435.1|WP_002847783.1|1832236_1834231_+|TonB-dependent-receptor
MLKKITICSLSAATLVFGTQIRLDTTVISTSGFETKLKDEVRNVIVITSEDIQNKGYKNVEEILEAEPSISFIDPGFGRTIDMRGQGINSNFSTKIMLNGVALNMLDTSHATVPINTISVDDIEQIEIIPGGGSVLYGNGTSGGVINIITKNQPRDFYTNLSTKFGSYNYKDLNFAVGGMANDDLFLKFNAKKFDEKGYRDGEKNRGYYTSGGATYQINDNQSVMLNSSYYNATTSTLNALSKAQVNSDPKQGGKKTTKDGTRLDLTLDYALKYGDYVDFHIFPYYQKIKQELDDNSGFEDKKYGINLKNRMDYGNGELIYGYEYYINKGLRYRNNQGSRRGVTVKNSINVDLEKKSHSIYVMDNHHFNDWFSISSGYRFEKASYDLDRSSITNIYMPNSTRPMTTVKNIANQPDTNNHAFEITPNLKYSDTGNIYFKFERGFYSASPTQLTNSVRPQGATRGLVYKFNNLKSEIFYTYEIGAKDYFLGSYMSATAFITDKKNEIRNIMEEDHTLWRFINLDKTRRLGIELYASQYMLDNDLSLKQTYSYVDAKITSGEFNNKRIPLAAKHKLVFGADYKVIRNLNVFGDIKYFSDMLDNGYEKINSKTIVDIGAKYSFPKGFLVIAGIKNLFDKRYFTYQDKIKDQYKPANARNYYVEFKYVY

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP043435_1	1.16|676583|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676583-676618	36	NZ_CP043435.1	1474768-1474803	1	0.972

1. spacer 1.16|676583|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to position: 1474768-1474803, mismatch: 1, identity: 0.972

tacatcttttatctcctctttgtattcctttagctc	CRISPR spacer
tacatcttttatctcctctttatattcctttagctc	Protospacer
*********************.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043435_1	1.7|675990|37|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	675990-676026	37	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	37229-37265	2	0.946
NZ_CP043435_1	1.7|675990|37|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	675990-676026	37	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	34209-34245	2	0.946
NZ_CP043435_1	1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676057-676092	36	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	8545-8580	2	0.944
NZ_CP043435_1	1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676057-676092	36	NZ_CP007000	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence	79920-79955	2	0.944
NZ_CP043435_1	1.23|677044|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	677044-677079	36	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	6189-6224	7	0.806
NZ_CP043435_1	1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676057-676092	36	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	42976-43011	9	0.75
NZ_CP043435_1	1.18|676715|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676715-676750	36	MK448743	Streptococcus phage Javan371, complete genome	12867-12902	9	0.75
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	114101-114135	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	MT764208	Escherichia phage JEP8, complete genome	35159-35193	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	71742-71776	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	NC_009821	Enterobacteria phage Phi1, complete genome	121045-121079	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	NC_025425	Enterobacteria phage GEC-3S complete genome	120585-120619	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	NC_041936	Escherichia phage ECD7, complete genome	123453-123487	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	123386-123420	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	MK962753	Shigella phage JK32, complete genome	133835-133869	10	0.714
NZ_CP043435_1	1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	676452-676486	35	NZ_MK275621	Clostridium perfringens strain JXJA17 plasmid p3, complete sequence	46854-46888	11	0.686
NZ_CP043435_1	1.23|677044|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT	677044-677079	36	KJ018209	Shewanella sp. phage 1/4, complete genome	128607-128642	11	0.694

1. spacer 1.7|675990|37|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.946

tccagagctaataagggatttagagcagctaaaaact	CRISPR spacer
tccggagctaataagggatttagagcagctaaagact	Protospacer
***.*****************************.***

2. spacer 1.7|675990|37|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.946

tccagagctaataagggatttagagcagctaaaaact	CRISPR spacer
tccggagctaataagggatttagagcagctaaagact	Protospacer
***.*****************************.***

3. spacer 1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 2, identity: 0.944

cgcaaaaagagttgaaatatatagataataggttaa	CRISPR spacer
cgcaaaaagaattaaaatatatagataataggttaa	Protospacer
**********.**.**********************

4. spacer 1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007000 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP1, complete sequence) position: , mismatch: 2, identity: 0.944

cgcaaaaagagttgaaatatatagataataggttaa	CRISPR spacer
cgcaaaaagaattaaaatatatagataataggttaa	Protospacer
**********.**.**********************

5. spacer 1.23|677044|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 7, identity: 0.806

catcctccttttaatttattacatttaaacaattta	CRISPR spacer
aatcctcctttgaattcattacatttaaaacatatc	Protospacer
 ********** ****.************  ** * 

6. spacer 1.8|676057|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 9, identity: 0.75

cgcaaaaagagttgaaatatatagataataggttaa	CRISPR spacer
tagcaaaatatttgaaatatatagataatagcggaa	Protospacer
..  **** * ********************   **

7. spacer 1.18|676715|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MK448743 (Streptococcus phage Javan371, complete genome) position: , mismatch: 9, identity: 0.75

tcaccaa-----aaaaaccaggaattaaataaaaagtaaaa	CRISPR spacer
-----aaggatgaaaaagcaggaattaattaaaaagtacga	Protospacer
     **     ***** ********** ********* .*

8. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

9. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

10. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

11. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

12. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

13. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

14. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

15. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.714

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
cgatctgcgatatattcgatgaaaagaccgctcat	Protospacer
*  *************.********.** *   . 

16. spacer 1.14|676452|35|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275621 (Clostridium perfringens strain JXJA17 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.686

ccttctgcgatatatttgatgaaaaaacagaaagg	CRISPR spacer
aaaataaagatatatttgataaaaaaatagaaatg	Protospacer
    . . ************.******.***** *

17. spacer 1.23|677044|36|NZ_CP043435|PILER-CR,CRISPRCasFinder,CRT matches to KJ018209 (Shewanella sp. phage 1/4, complete genome) position: , mismatch: 11, identity: 0.694

catcctccttttaatttattacatttaaacaattta	CRISPR spacer
ggctattattttaattcattacatttaaacacttct	Protospacer
 ... *. ********.************** **. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1413082 : 1423105	8	Cronobacter_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP043435|1413082:1423105|DBSCAN-SWA
AATGAAACATATTAAAACAAGCAATAAGAAAGAGTGCGAAATACCTTGCCGTTTTTTAGATAAAGGCAGTGTGTCTATTGTGGTTCCTTGTTACAATGAGGAAGCTTCTATATCCATATTTCAAAACGAAATCATAAAAATATTAACAAATATCAAAGACAAAATAAACTCAAACTTTGAATATGAAATTATTTTTATAGATGATGGAAGTCAAGATAAAACAGCTTTAGAAATAAAAAAATTATGTAATAAATTTAATAATACTCACCTTATTAAATTTTCGCGTAATTTTGGTAAAGAAGCCGCTATTTTAGCAGGTTTTAGAATGGCAAAAAATAGCAGCATAGTCTTAATAGACGTAGATCTACAACATCCTGTATATCTGATAGAAAAAATGTATGAAATTTGGTATAGCAATGAAGCAGATATCATCTATGCTATAAGAAAAGATAGAAAAGGTGAAAGCTTTTTGAAAAGCAGACTAAGTGAAATATTTTATAAAATTTCAAATATAATCTCAGACGTAAAATTAAAGCCGGGGGTAAGCGACTTTAGATTAATGGATAAAAAAGTTGTCGATATCTTAGTAGCAATGAATGAATATCATAGATTTAGCAAAGCCATGTTTGAGTGGGTAGGATTTAAAAAAATAGCGTTAGAATATGATTATGCCCCAAGAATTAACGGTAAAACTAGCTGGAGTTATATGAAGTTATTTAAATATGCCGTAGAAGGTATGATAAGTTTTTCGACTACACCTCTAAAAATATCATTTTGGATAGGGTTGATGATAAGTTTTATATCCGGAACTTATGGAATTTTTATCGTTTTTGATACTATCATAAATGGAAATACCGTAAAAGGCTACCCTTCAATGCTTACTATAATACTATTTTTAGGAGGAATACAGCTAATATTTTTAGGAATTATAGGGCAATATATTGCAAGAATTTATGAACAAGTAAAAGATAGACCGCATTATATAGTTGAAGAGGAGATTTAGCACAGTGAATTTAAAACAAACTTTAAAAAAAGAGCTACTATTTGTTATAGCAACTGTTAAAAATTTTTTCAAGTATAACCACTTCTATAAATATTTTATTTTCATTTTTGGGCTATATTTTACAGGATATTTTGCACTAATAGTAAATAATGTTAATTATGGCGATGACTATCATAGAGCTACATATGGAGATTTTGGATTTCAGATATGGAGCAGATTTTCATCAGAGTTTTTATCAAAAATATTTCATATAAGTTTAAATAGAAATGTGGAAATATCTCCTCTTTTACAGATAATCGCAATTGCTATCTTGTCTATCGGATCAATGATTTTAGTAAAAACTATTTTAAAAAAATATAATTTTTGGGGACTTGCTGCTAGCCTACCTTTGGGGCTTAGTCCATTTTTTTTAGAAAATATGAGTTTTAAATTTGATAGTGTGTTTATGGCGATATCATTAGTTTCACCAATCATTCCTTTTCTATTTTTAAAAAATAAAATAGCATTTTTTATAATATCTATTTTGTGTTTAGAATTGACCTTAACCACATATCAAACAGGAAATGCGGTGTATATAATGTTATCTTTATTTATAATATTGAGTTATATATTAGAAGGTAAAGATTATAAGCAGATTATTAAATGTGCTATGTTGCTTATATTGGCATATATTTCATCACTTCTTATATATAAGTTTTTTATTTTAAATGAATCTTCCGGAGAATGGTACGCATCAAAAAGCACATTTGAACTAAATAACCTGATTCCAGGAGTAAGTAAAAATTTAAAAACGGTACTGAAAATATATGAAGATGTTTTTAAACATACTATTTTTGTACCTATATTTGCACTTGGGATAATTGGATTTTTATTTGCTTGTATAAAAGTATCTAAAATATGTAGATTTTGGACTCTTATCGCTAGTTTAGGATTTATAATCTCTGGAATTTTATTATCTTATGGGGCTTATTTGGTATTAGAAAAACAGATTTTTAGTGATAGAACTTTTAATGGTATAGGTATGTTTCTAGCAATTATATTTGTATTTTTATTTAAAATAGATATAAAAATATATAAGTTTTTTAGCAAAACTATATGTTTTATATTAGCTTATTCACTCATAATAGAAGCTACTGCTTGGGCAAATGTATTAAAAGAGCAAACAGAATATGCAAAATACAGAGTTGAGATTATGCTGCATGATTTTTATAAAATGATACCAAAAGATAATAAATTTGGCTTTACCTCTGAAGTAAATAAAAACAATTTTATGTCTCCAATAGCATTAAACACGTCAAAAACATTTCCTATAATAATGAGAAATCACGCTATAGATAATATGCTAGATGCAAATTGGCTGTTCAACTCTTATGGACTTATGGCTCATTATGAACATTGGACACCGATACTCTCAAAAGGCCTATGCGGACAAAAAAATAAAAAGCCAATTGAGATCGTAGAAAATCCGCTCCATAAAATCACAAAATATGATAACAACTGTTTTGTTATAGAGTTTTTATAAATGAAACTATCTAATTCATATTTTTTACGATATTTATGTGTAGGAGTATTAAATACTATTGTTGGCTTTGGGATTATATTTACCCTTATGTATATTGGATATAGCGCGGAAATCTCAAATTTAATAGGCTATATTTGCGGAATTATTTTCTCATATTTTATGAATAAATTTTTTACTTTTAATACAAAAAATAGAAACAAAAAAGAGTTTATAAAATTTATAATAGCGATGCTTATCTCTTATGTATTAAATCTATTAATGCTTAAAACTTGTCTGAGTTTAGGTATAAATGCATATATAGCTCAACTATTTGCAGGAGCCGCATATACTGTAAGCGGCTTTTTAATAAGTAAATTTTGGGTATTTAAACTAAACAGTTAGCTATTTTAGTTTCTTCTCCCACTCTAAAGCTGAGCTGATGATGAGCTCCAAACTCTCGCGAGTCGGTTTCCAACTAGTTTTATTTCTAAGCTTGCTAGCGTCTGATATAAGCATAGCTGGATCTCCTTCGCGGCGTGGGGCATTTAATACTTTAAAATCCACTCCGCCAACTTTTTTAGCCGTTTGAACGACTTCTTTTACGCTAAATCCTCTACCATAGCCCACGTTAAATATATCACTATCATTTGTTTTTAGATATTCAAGTACGGCCAAATGAGCATTTGCAAGATCTTCTATATGGATATAATCTCTTACACAAGTTCCATCTTTTGTAGCGTAATCACTCCCAAAAATACTCATACTTTCTCTTTTTCTAGTAATCGTTTGAGTGGCTACTTTGATAAGATGAGTCGCGTTTGGATAATTTTGACCGATAAGCCCGTCCGTGCTTGCTCCAGCTACGTTAAAATAACGCAAAATGCCAAATTTAAAATCCCTGTTTGCAAGCGCGGCGTCTTTTAAGATCCACTCAGTCATGAGCTTGCTTCTACCGTATGGATTGATCGGATTTTGCTCGCTTGTTTCATCGACTACGCCGCTACTAGGCTCCCCATAAGTAGCAGCAGTCGAGCTAAATATAAACTTACTCACACCGTGTTCAACAGCTAAATTTATTAAATTTGCGGCGTTTGCCGTGTTATTTAGATAATATTTCAGTGGTTTTACCATACTTTCAAACACTTCTATATATGCTGCAAAATGTATGATTGCTTCAAAATTACGCCCTCTAAAAATCTCCCTAAGGCTAGAAGTGTCTTCTAAAGAGCATTTTATAAACTCGAATTTTCCAACTTTTTCAAGCGTTACTAACGCCTCTTTACTTCCTGTGTAGAAATTATCTATGACAGTTATGTTATGCCCACCCTCTTCTAACAGAGATTTTAAAACGTGAGAGCCGATATATCCAGCTCCTCCGGTTATCAAGATATTCATTTTTCGCCTTCGTTTTACTTTAAATCTTAGTGATTATTATAGCTAGTTTAGACTTAAATAGCCTAAAATAATTCACGTTTTAAAATTTTGCTTGTGGCGTTTTCTAGCGTCTTTAACTCATTATTTAAATTTGAAATTTCACCCTCACAAAACTCAATGGCTTTAACGATTTTTTCTTGAGCCTCAAGCGGCGGAAGTGATAAAGTTAAATTAGAAATTCTTTCAATTGATGCTCTATTTTGTCTAGAAAATCCAAATTTAGCACCAACTTCAAAAAGAGCAAATTCTAAAATTTTTGCTTTATGTGATTTACTTCTTAAAACTCCGCAATGATCAGTCGGATAAAAAGGTTCATTTGCTTTTACAAATCCTGTCATCCAATCTCCATCAATTCCCCATAAAACACTATCAAGACTAAAATCTTTTATTAAATCTTTATTTATTTTTCCAAAAGGTTCTTTAACATTTGCACTAAATACATTTATGCCATCTTGCGTTAAATCTTTATCTAAAACACGCTTACCGATTTTTAATATAAAATCTTTATTTGTTAATTTTACGCTTTCCCACTCGCTTAAGCCATAATTTTGCGGTGATGGTAAATCGTTTAAAATTTGAGCTAAATTTTGCTCATACCCTCCCCCTATCTCTAAACTAGAATCGGTGATTACACAACTTTTAATTAAAATTTCTTTAATCAAGCTTTTATACTCTTCAATACTCATTCTAATAGTTTTAAATTTCTCTTCTACCTCTTCGCACTCTTTAGCGATTTTTTCTTGGATTTCTAGCGGTGGAAGTGGGATTTTAATATTTGAAAATTTACTTTTATTTATAATTGGAACTGTTGTATTGTGTGTCTGCTGAATTAATAATTGTTTAAAAAAATTAGTATCAAACAAATAAAATAAAAATTCACTTATATAATTATTATTTGGCAATAATGCATTAATTTGCTGATTAAAAATTCCACTTTTTTCAATCATCCCAACTCTTCCAATTGTTCCAATGCAACTAACTAAGATAGATTTTTTGGGTAAAGCTCTCTGACTTTCATATCCAAGTTTTGAGACCATAACTTCAGATGAATTAACATTTCTACCATTAATTAAATCCGCTGGTCTATAAAAAGGAAAATCAGAACCATAAAATTCTTTTTTTTGTGTGCTTGGTGTTGAACCTGTTAAAATTTCGCAAATTTCTCCAAGTTTTACAAGCTTAAATTTAGACCCTTCAAAAGGATTTAAATTTACGCCATTTTTGCTACTTGCAATATTTAAATTTATAGCTTTATTAAATTTCGCACTCGTAAAATCAAGGCATTTTAACAGCGGCGTGGTAAAGGCAAATTCGCTTAAATTCGCAGGAATTTGTAAATTTTGGCTAAAACTAACATATGGATCTTTTAATTTTTGTTTTTCAAAGTCATCATTTAAGATAAAAGCACGTCTTACTAAAAAGCAAAGTTTTTCAGGATTATCTAAATTTTCACGCTCGAAAAGCGGCGAATTATACGGCGTTTGTAGCTCTTTTAGCCCTTCGCTTCCTTTGCGATTGCTCCACTCATAGCCTAAAAATTTGCTTTGAGCTTTGTTTTCGCTCGGGCTTTTTATGATGAGAGTTTTTGTATCTTTTACTAAGCTAAAAAAGAGAATTTTCTCTTTTTCTAAATTTAGACAAAAGTTCAAAAATTCTTTTTGCTCTAAAGCTTCTTTTTCATTGCTATCTTTATAGCGTCTAGATTTTTTTAAATTTGATAGCGCGGATGAGTTTTTAAATTCGTTTAAATACTCTTTAAAAATATCGTGGCTATAAATTTCTCCATAACCACCGCTTAAAAACTCTCTAAACTCATCTTTTTTATAACCCATAAATTCGCAATACGCTAGCAAGCCCTCAAGCAAATAAAGATTAGAAAAATCTAGCGAGCTTTCTATATTTTCTTTTAAGTTTTCATAACTTTGAGAATTAAAGCCATTTGCATAAGTTTGCTTTTTACTTAAAAATAAAATTACGGTATTTGTGCCGGTAGCGCCAAAGGTATTTGAACCAAGCTCGGTTATAGAGATGATGTCAAAATTTCTTAAAATTATCTCTCTAGTTTTTTCATAAACGCCGTCTTTATTTAAAATGCTTGAAGGCAAGATAATAGCAACTTTTGAATTGCTTTTTAAAAGTCTGTTTGCACGTTCAATAAAAAAACACTCGATAGCATTTGAACTTTTTAAATTTATATAGTTAAAAAGTTCGTATTTTTCGCATTCATTTTTTGATAAAGTCTGCAAAAAACCTTTTACACTATAAGGTGGATTTGCTATAAGCAAGTCAAAATCACGCTCCTTAAATTTGCTCTCATCAAGAGCGTCTGCATAAGAAATTTTAACACCACTTTGCCCATACATAGCAGCACTTACTTTTGCGACTTTACTTAGGCGATATTCTTTTTCTATGCCATAAATGTTTGAGTTTATAGCTTCAGAATCATTACTTATACTTTTAGCTATATTTGCATACGTATTTAGAAAATGTCCCGCACCACAAGCATAGTCAATCACCTTTGGAATATCCTTATCAAAAAGCATTTTAAGCGGTAAAGAATGCACTATAAACTCGCAAATTTGAATAGGCGTAAAAAACTGCCCCTCATCTTGCTTCATACCTTTTTGCAAAAATAACTCAAAAAGATTGCCTAAAAGCTGGTTGGTTTTATTTTGAGTTAATCTTAAGTTTTCAAAAAGCTTAATAATGGCTTTTAAAACTTGTGCGTTTTGCTCAAAAAGAGTTTTGTTATGTACTTCAATAAAGCTAAAATCGCTATGAGAGTAAAATTTTAGCATACGGATAAATTCGTTTATCTGGTTTTTTAGTGTTTGAGTTTTGATTTTGTTTCGTTTAAAGTCGCTAAACTGCTCATCTATTTGTTCATCGCTTACATATGTGATTTCTTCGTTTAAATACTCTTTCATAGCATCTTTATAAAGCTTCATCAAACGCTCTTGCATCGCTTCAAAGCTGTCAGCCGTAACGCCACGGTAACAAAATTGTAAGTTTTCTTTATTGTGCGTTTCATCGTAAATTTTACATAAAAACAGATTTACAAGTTTATCAAAGGCGTTTTCCTTACCGCTTATGTTGTATTTACGCAAAATCGTGGCAAAATCGTGATATTTGCCATCTTCATAGCTTTTGCCATCTTCATTTTGGCTAGTAAGCTCTACTAAATCATCAAAACAAAGTGCGCTTTTGCCAACTTCATAAGGATTTATATTTATCTCAAAAATTCCAACTTGTGAGTAATCGCCTTTGTAAATTTCACTCCAAACTTTAAAAATCTCTTCGGCACTTGTGGCTGTTTGGTAACTTTTGGCAAAGCCTTGACTTTGTAAGTAGATTTCATTGTCGTTAAAATTTAAAATATAATTTTCAAATTTAAGCTCATTGTTTTTAAAATCGCTTGTATAAAGTGCTAGAAACTTTGCACTACGCTCTTGTTGATGATAGCTGATTAACTGGCTAGGCTCATTTTGCATTCTATTCCACTCTTTGCTAAATTCACTTCCGGCGGTTTTACACTCAATTATTAAATATGGCAAATTGCTTTCATCTTTTACTAAAATATCAGCTTTGCCGCTTTTGGCATCTCGCCCAAGCTGCCAACGCGGTTCAAGCTCTAAATTTGCAGGCTTATAGCCTTTTTCAAGCAGACGATTTACGCACTCTAAAACGACTAAATTTTCAGTATGAGAAAAGTTGCAAGTAGTCTCATCGCCTTTTTTTATCTCTAGTGGATAGATTATTTTTAAATTTTTAAAATCTACTTTTATGACTGCGTCGTTTGCGTAAGTTTTGCTAAAAATCTCGCCGTTTTGTTTAAATTCTAAAAGTTTTAGTACTTGGGCTAAATTCTCTTTTGTTACCATTTTTTACCTTATTATTTTAACTTCACATATAAGTTAAGTAGGCATTGAGCCAAAGATGAGATTTTTATCTTTTTAAACTCACCAATCCCTCTTCTTACTCTCCAGCTTTTCATCCATATATTCCCAGCCTTTTATACACCACTCAAGCTCAGCTGAATCTTTAGAATATCTATCAGTGCATTCCCATTTTCCTTGCCCTAATTGTCTATAAATTGAGCCTTCTCTATGATATTTTCTCTCAAAAGCGTTACTCGCTTCGTTTATAGGCCATGCGCCGGCGCTTATGACAAATACTACAGCTAAAAAACATACTTTTTTCATATTTTATCCTTTATTTTGTTAAATTATTATCGCTTTTAACACGTAAAAATACGGGAAATCTAGGCTTAGCGTATTTAGTTAAATTTTGATATTTATAAGTAATGATAGTGCCGACTTTTGGCGGATTTGATCTTTGCTCATCACTAAAACCAGAACCTATCTTAAACTCTATGTTACTAAAAATATCAACACAAATCAGCGAACCTAAAAGTCCTTCAAATTTACCTTTACCGTTTTGCAGTTTGACGACTTTACACTCACTATCTTTAAACTTTTTGAGCTTTAAAATTTCGCCGCTTCTACCATTTTTATAAGGTGCGTTTTCATTTCTTACGACTATGCCCTCGCCACCACCGCTAACGACCTCATCTAAAAACGCAAAAGCGTCTTCGTTTGAGTCTATTTTTATCTGCTCTATTACCCGTATAAACTCATTTGAATTTTGACTTAAAAACTCACGCAGCACTTCTAGTCTATCGCGCAAATTTCCCTTAGCGTTTGGCACATCAAATATCATAAATTTGATATTTTCCCAACCTTTATCATCAAAAGAACTAATCACGGAGCCGATAAACTCAAACTCGCCTCGTCCGCTCCAAAGCTCACCGTCTATAGCGAAATTCGGAAAATCTTTTAGCCACCATTTTGGAGCTTTGATGATCTTAGCATTTCTGCTTTTCAAACTCTTGCCATCCCAGATAGCTCTCACGCCATCATACTTTTCGCTCATTAACCAACCGCTTAAATTTTCATCATTATACTCTTTTAATAGCATAACTTCGGCTTTTAAAATTAAAAAAGCGATTAATAATAGAGCTAAAAACTTCAAATTTTTACTTTATAATAGTCCATATACCACTGCACGAATCTTGCAACTCCATCATTTACGCTAGTATTTGGTTTATAGTTAAAATCCTCTACTAGATCGCTTACATCGGCGTAAGTCGAAGGAACATCACCTGCTTGAAGCGGCATAAGATTTTTTTTAATTTCACGTCCTAGTTTTATCTCGATCGCCTTTATGTAGTCCATTAGCTCGACTGGAGAGTTATTTCCGATATTATAAATTTTATAAGGCGCGTTTGAAGTAGCTGGATCAGGATGGCTTGCATCCCACGCTAAATTCGCAATAGCCGGGTTATCCACGCATTTCATTACGCCTTTTACGATATCAGTTACGTAAGTGAAGTCTCTTTTCATCTTTCCATAGTTATAAACATCGATAGCTTTGCCCTCTAAGGCAGCTTTGGTAAATAAAAACAGAGCCATATCAGGACGTCCCCACTCGCCATAAACGGTAAAAAATCTTAGTCCGGTCGTGCTAAGTCCAAAAAGATGGCTATAAGTGTGCGCCATAAGTTCGTTTGATTTCTTGCTCGCGGCGTACAAACTGATGGGATGATTTACACTCTCGTGAGTGGAAAACGGCATTTTTTCATTTAGTCCATAAACCGAACTTGAGCTTGCATATACGAGGTTTTTCACACCATAATTACGACAACATTCAAGAATATTTGTAAAACCTAAAATATTGCTATTTATATAGGCGTGCGGATTGATGAGAGAGTAGCGAACTCCTGCTTGCGCGGCTAAATTTACTATGCAGTCAAACGAGCCGTTTTCAAAAAGCTTTTGCATAGTTTTAAGATCGCTTAAATCGGCTTTTATGAAGCTTAAATTTGGATAAATACTGGATCTAACTGCTATGTTTTCTTCTATATTTTCACGTTTTATACCAAGCTCGTTTAGCCTTGCGTATTTTAAATTTATATCGTAATAATCATTTATACAGTCAAATCCGACCACTTCATCGCCACGCTTTGCAAGCTCACGGCTTAGATGAAATCCTATAAATCCGGCTGTTCCAGTAACTAAAATTTTCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP043435|1413082:1423105|1415606_1415987_+|WP_029662383.1|DBSCAN-SWA
MKLSNSYFLRYLCVGVLNTIVGFGIIFTLMYIGYSAEISNLIGYICGIIFSYFMNKFFTFNTKNRNKKEFIKFIIAMLISYVLNLLMLKTCLSLGINAYIAQLFAGAAYTVSGFLISKFWVFKLNS
>NZ_CP043435|1413082:1423105|1421231_1421996_-|WP_002850254.1|DBSCAN-SWA
MLLKEYNDENLSGWLMSEKYDGVRAIWDGKSLKSRNAKIIKAPKWWLKDFPNFAIDGELWSGRGEFEFIGSVISSFDDKGWENIKFMIFDVPNAKGNLRDRLEVLREFLSQNSNEFIRVIEQIKIDSNEDAFAFLDEVVSGGGEGIVVRNENAPYKNGRSGEILKLKKFKDSECKVVKLQNGKGKFEGLLGSLICVDIFSNIEFKIGSGFSDEQRSNPPKVGTIITYKYQNLTKYAKPRFPVFLRVKSDNNLTK
>NZ_CP043435|1413082:1423105|1415987_1416980_-|WP_002850245.1|DBSCAN-SWA
MNILITGGAGYIGSHVLKSLLEEGGHNITVIDNFYTGSKEALVTLEKVGKFEFIKCSLEDTSSLREIFRGRNFEAIIHFAAYIEVFESMVKPLKYYLNNTANAANLINLAVEHGVSKFIFSSTAATYGEPSSGVVDETSEQNPINPYGRSKLMTEWILKDAALANRDFKFGILRYFNVAGASTDGLIGQNYPNATHLIKVATQTITRKRESMSIFGSDYATKDGTCVRDYIHIEDLANAHLAVLEYLKTNDSDIFNVGYGRGFSVKEVVQTAKKVGGVDFKVLNAPRREGDPAMLISDASKLRNKTSWKPTRESLELIISSALEWEKKLK
>NZ_CP043435|1413082:1423105|1420978_1421221_-|WP_002850252.1|DBSCAN-SWA
MKKVCFLAVVFVISAGAWPINEASNAFERKYHREGSIYRQLGQGKWECTDRYSKDSAELEWCIKGWEYMDEKLESKKRDW
>NZ_CP043435|1413082:1423105|1413082_1414084_+|WP_002850239.1|DBSCAN-SWA
MKHIKTSNKKECEIPCRFLDKGSVSIVVPCYNEEASISIFQNEIIKILTNIKDKINSNFEYEIIFIDDGSQDKTALEIKKLCNKFNNTHLIKFSRNFGKEAAILAGFRMAKNSSIVLIDVDLQHPVYLIEKMYEIWYSNEADIIYAIRKDRKGESFLKSRLSEIFYKISNIISDVKLKPGVSDFRLMDKKVVDILVAMNEYHRFSKAMFEWVGFKKIALEYDYAPRINGKTSWSYMKLFKYAVEGMISFSTTPLKISFWIGLMISFISGTYGIFIVFDTIINGNTVKGYPSMLTIILFLGGIQLIFLGIIGQYIARIYEQVKDRPHYIVEEEI
>NZ_CP043435|1413082:1423105|1422046_1423105_-|WP_002850256.1|DBSCAN-SWA
MKILVTGTAGFIGFHLSRELAKRGDEVVGFDCINDYYDINLKYARLNELGIKRENIEENIAVRSSIYPNLSFIKADLSDLKTMQKLFENGSFDCIVNLAAQAGVRYSLINPHAYINSNILGFTNILECCRNYGVKNLVYASSSSVYGLNEKMPFSTHESVNHPISLYAASKKSNELMAHTYSHLFGLSTTGLRFFTVYGEWGRPDMALFLFTKAALEGKAIDVYNYGKMKRDFTYVTDIVKGVMKCVDNPAIANLAWDASHPDPATSNAPYKIYNIGNNSPVELMDYIKAIEIKLGREIKKNLMPLQAGDVPSTYADVSDLVEDFNYKPNTSVNDGVARFVQWYMDYYKVKI
>NZ_CP043435|1413082:1423105|1417042_1420900_-|WP_002850250.1|DBSCAN-SWA
MVTKENLAQVLKLLEFKQNGEIFSKTYANDAVIKVDFKNLKIIYPLEIKKGDETTCNFSHTENLVVLECVNRLLEKGYKPANLELEPRWQLGRDAKSGKADILVKDESNLPYLIIECKTAGSEFSKEWNRMQNEPSQLISYHQQERSAKFLALYTSDFKNNELKFENYILNFNDNEIYLQSQGFAKSYQTATSAEEIFKVWSEIYKGDYSQVGIFEININPYEVGKSALCFDDLVELTSQNEDGKSYEDGKYHDFATILRKYNISGKENAFDKLVNLFLCKIYDETHNKENLQFCYRGVTADSFEAMQERLMKLYKDAMKEYLNEEITYVSDEQIDEQFSDFKRNKIKTQTLKNQINEFIRMLKFYSHSDFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLTQNKTNQLLGNLFELFLQKGMKQDEGQFFTPIQICEFIVHSLPLKMLFDKDIPKVIDYACGAGHFLNTYANIAKSISNDSEAINSNIYGIEKEYRLSKVAKVSAAMYGQSGVKISYADALDESKFKERDFDLLIANPPYSVKGFLQTLSKNECEKYELFNYINLKSSNAIECFFIERANRLLKSNSKVAIILPSSILNKDGVYEKTREIILRNFDIISITELGSNTFGATGTNTVILFLSKKQTYANGFNSQSYENLKENIESSLDFSNLYLLEGLLAYCEFMGYKKDEFREFLSGGYGEIYSHDIFKEYLNEFKNSSALSNLKKSRRYKDSNEKEALEQKEFLNFCLNLEKEKILFFSLVKDTKTLIIKSPSENKAQSKFLGYEWSNRKGSEGLKELQTPYNSPLFERENLDNPEKLCFLVRRAFILNDDFEKQKLKDPYVSFSQNLQIPANLSEFAFTTPLLKCLDFTSAKFNKAINLNIASSKNGVNLNPFEGSKFKLVKLGEICEILTGSTPSTQKKEFYGSDFPFYRPADLINGRNVNSSEVMVSKLGYESQRALPKKSILVSCIGTIGRVGMIEKSGIFNQQINALLPNNNYISEFLFYLFDTNFFKQLLIQQTHNTTVPIINKSKFSNIKIPLPPLEIQEKIAKECEEVEEKFKTIRMSIEEYKSLIKEILIKSCVITDSSLEIGGGYEQNLAQILNDLPSPQNYGLSEWESVKLTNKDFILKIGKRVLDKDLTQDGINVFSANVKEPFGKINKDLIKDFSLDSVLWGIDGDWMTGFVKANEPFYPTDHCGVLRSKSHKAKILEFALFEVGAKFGFSRQNRASIERISNLTLSLPPLEAQEKIVKAIEFCEGEISNLNNELKTLENATSKILKRELF
>NZ_CP043435|1413082:1423105|1414088_1415606_+|WP_011732184.1|DBSCAN-SWA
MNLKQTLKKELLFVIATVKNFFKYNHFYKYFIFIFGLYFTGYFALIVNNVNYGDDYHRATYGDFGFQIWSRFSSEFLSKIFHISLNRNVEISPLLQIIAIAILSIGSMILVKTILKKYNFWGLAASLPLGLSPFFLENMSFKFDSVFMAISLVSPIIPFLFLKNKIAFFIISILCLELTLTTYQTGNAVYIMLSLFIILSYILEGKDYKQIIKCAMLLILAYISSLLIYKFFILNESSGEWYASKSTFELNNLIPGVSKNLKTVLKIYEDVFKHTIFVPIFALGIIGFLFACIKVSKICRFWTLIASLGFIISGILLSYGAYLVLEKQIFSDRTFNGIGMFLAIIFVFLFKIDIKIYKFFSKTICFILAYSLIIEATAWANVLKEQTEYAKYRVEIMLHDFYKMIPKDNKFGFTSEVNKNNFMSPIALNTSKTFPIIMRNHAIDNMLDANWLFNSYGLMAHYEHWTPILSKGLCGQKNKKPIEIVENPLHKITKYDNNCFVIEFL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002850239.1|1413082_1414084_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	4.8e-61	41.5
WP_011732184.1|1414088_1415606_+	hypothetical protein	F1C5A9	Cronobacter_phage	2.3e-06	24.9
WP_029662383.1|1415606_1415987_+	GtrA family protein	NA	NA	NA	NA
WP_002850245.1|1415987_1416980_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.6e-56	41.1
WP_002850250.1|1417042_1420900_-	N-6 DNA methylase	E3T4D5	Cafeteria_roenbergensis_virus	1.3e-10	29.8
WP_002850252.1|1420978_1421221_-	hypothetical protein	NA	NA	NA	NA
WP_002850254.1|1421231_1421996_-	DNA ligase	A0A1X9VNU1	Mimivirus	1.7e-34	34.0
WP_002850256.1|1422046_1423105_-	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	7.2e-31	29.1