CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043438	Enterobacter sp. LU1 chromosome, complete genome	3 crisprs	DEDDh,csa3,WYL,DinG,cas7f,cas6f,cas3,cas14j	1	12	5	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043438_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043438_1

1143746-1143850

Orphan

Consensus_repeat	Method
TGTCCAGCCGATGTCCAGCCAGTGTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043438_1

>merge|NZ_CP043438|1|1143746-1143850|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCAGCCAGTGTCCAGCGCAAACGCAGTTATATCAATACCTGTGGAGGCGGAGTGTCCAGCCGATGTCCAGCCAGTGTCCA

>NZ_CP043438|1|1|1143746-1143850|CRISPRCasFinder
AGTCAAATTTTTGTCCAGCCGATGTCCA	GCCAGTGTCCAGCGCAAACGCAGTTATATCAATACCTGTGGAGGCGGAG
TGTCCAGCCGATGTCCAGCCAGTGTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043438.2\|WP_015571544.1\|1143224_1143371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149121031.1\|1148851_1149463_+\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP043438.2\|WP_047359648.1\|1147310_1147595_+\|DUF4752-family-protein	unknown	unknown	gnl\|CDD\|339554
NZ_CP043438.2\|WP_149121041.1\|1139838_1140036_-\|DUF1482-family-protein	unknown	unknown	gnl\|CDD\|369331
NZ_CP043438.2\|WP_149121035.1\|1144252_1145686_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP043438.2\|WP_063452511.1\|1149459_1149684_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149121034.1\|1145685_1146030_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_CP043438.2\|WP_149121038.1\|1142329_1142563_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP043438.2\|WP_149121040.1\|1140328_1140514_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149121032.1\|1148688_1148859_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP043438.2\|WP_149121043.1\|1137580_1138498_-\|recombinase-RecT	unknown	unknown	gnl\|CDD\|367688
NZ_CP043438.2\|WP_047050266.1\|1146026_1146230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_032656806.1\|1141520_1142225_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP043438.2\|WP_032104836.1\|1148233_1148689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP043438.2\|WP_149121042.1\|1138799_1139768_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP043438.2\|WP_149121033.1\|1146226_1146562_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149121039.1\|1141213_1141510_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_097414431.1\|1147739_1148021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_063418855.1\|1138507_1138792_-\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP043438.2\|WP_149121037.1\|1142592_1143135_+\|regulator	unknown	unknown	gnl\|CDD\|368819

Protein	Function_ID	Function_description	E-value
NZ_CP043438.2\|WP_149121031.1\|1148851_1149463_+\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.9948e-67
NZ_CP043438.2\|WP_047359648.1\|1147310_1147595_+\|DUF4752-family-protein	gnl\|CDD\|339554	pfam15944, DUF4752, Domain of unknown function (DUF4752). This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 90 and 105 amino acids in length. There is a conserved GLA sequence motif.	3.02576e-18
NZ_CP043438.2\|WP_149121037.1\|1142592_1143135_+\|regulator	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	8.94307e-35
NZ_CP043438.2\|WP_149121035.1\|1144252_1145686_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP043438.2\|WP_149121032.1\|1148688_1148859_+\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	9.53623e-22
NZ_CP043438.2\|WP_149121034.1\|1145685_1146030_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000109621
NZ_CP043438.2\|WP_149121038.1\|1142329_1142563_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	2.54787e-23
NZ_CP043438.2\|WP_149121043.1\|1137580_1138498_-\|recombinase-RecT	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	8.36547e-22
NZ_CP043438.2\|WP_032656806.1\|1141520_1142225_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	2.33657e-32
NZ_CP043438.2\|WP_032104836.1\|1148233_1148689_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.22625e-93
NZ_CP043438.2\|WP_149121042.1\|1138799_1139768_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	5.45389e-10
NZ_CP043438.2\|WP_149121041.1\|1139838_1140036_-\|DUF1482-family-protein	gnl\|CDD\|369331	pfam07358, DUF1482, Protein of unknown function (DUF1482). This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown.	2.09047e-21

>NZ_CP043438.2|WP_015571544.1|1143224_1143371_+|hypothetical-protein
MAKNPRYYHTAVHKNITRDRFIRSVNPIVAEKMRAILEELKRKESGRG
>NZ_CP043438.2|WP_149121037.1|1142592_1143135_+|regulator
MHSLAYQHNTGIHPGAMINRAQAKAAPDHEKIRDAVRAWSSALDNQDVVSALIINEYREQGGTAISFPEDISRARQKLFRFLDNRFDSEQYRENVRQLTPAIMSVLPLEYRNRLAPQNDTMSLIATAMKECAEAKQAVLLDAPEHQKLKEVSEGIASLFRLMPEQVGPLMTMVTSMLGVM
>NZ_CP043438.2|WP_149121038.1|1142329_1142563_+|helix-turn-helix-domain-containing-protein
MNPTIKTAITIVGSQKALGEACAVSQQAVYKWLHNKAKVSPEHVNSIVKATGGEIQAYQIRPDLPTLFPSPSDNTAA
>NZ_CP043438.2|WP_032656806.1|1141520_1142225_-|helix-turn-helix-transcriptional-regulator
MKTTLAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTTKLVELANALKVKPEWLSSGEGAMLLTGQDEAIPPSDQWGTVEPWDNSTPLPDDEVEVPFLKDIELACGDGTFPREDYNGYKLRFSKATLRRVNAHRESVICFPAHGNSMEPVIPEGTTVAININDKKIVDGKVYAISQDGWNRLKILYRVGPNRLSIRSFNHVEHPDEEADLDSVQIIGRMFWTSTIW
>NZ_CP043438.2|WP_149121039.1|1141213_1141510_-|hypothetical-protein
MKKFLWAILFLTPLAANAEESALDQLKQSPSAICKDHAQPGQCKVAVQATMLAVYNITSLDAGCESSSDEVKAKMNNELKAQCAAAKEISDYLKSQNR
>NZ_CP043438.2|WP_149121040.1|1140328_1140514_-|hypothetical-protein
MDEDLQPTEAMIEAGISTLWEMLPGSMDSLYQDIDDEAERSELLSDTVTFIWQAMKEAQNT
>NZ_CP043438.2|WP_149121041.1|1139838_1140036_-|DUF1482-family-protein
METLFALVLTVAMTNGDYQDVILGVYDSQQECSQAASEQKVSAECWPVESILRNGEFPAKSIAQQ
>NZ_CP043438.2|WP_149121042.1|1138799_1139768_-|hypothetical-protein
MSEVTDLTVIEIKPEQAPVLYVAGGLDAYLEQIRQAVNEVPDLSTKKGRDRVASLAAQVSRSKTAIEKPGREYLKRLKEAVRPAEAEIKRFVDACDELRDATRRPLTEWEAEQERIKAEEAMNAMHAEALEMNIKFDQELAAKFEADHEMALLMNKDFDRDREEQRRQAEQAQRERDERLKQEAAEQARRDAEAKHKAELDAAARREAEEKARAELAERQRVEAEQRAAREKQEAEERARREKEEAVAAERRRLEEAEAARLAEEQRKGEEEARRAADKEHRRTVNRRVIADLIAQGIPEEFAQKALLAIAGGKVQDAHIKY
>NZ_CP043438.2|WP_063418855.1|1138507_1138792_-|host-nuclease-inhibitor-GamL
MNAFLTYDRIEDRRWVEQQLTDEKEKWIDDRAQQIIDMMPKEPSGLFHFSVPIDSSPYEGLRSDKAGEAYNDFISAVAYAQAEYDWEHRTGCPF
>NZ_CP043438.2|WP_149121043.1|1137580_1138498_-|recombinase-RecT
MSLTLVDFVKQQEPLFIKAATDERMVWAKESQFAIQLFQNNDYLAKVAFQNQTSTQNAIVNVAAIGISLNPAQKLAYLVPRKGAICLDISYMGLMHIAQQSGAIKWCQSAIVRRNDQFRREGLDKPPIHIYNDFDTEEQRGDIVGAYVTVKTDDGDYLTHTMRIDAIYSIRDRSEAWKKYKSDNSKKCPWVTDEEQMILKTVVKQAAKYWPRRERLDAAIDHVNTEGEEGINFAAERQPERDVTPAGDEIIKEINDVLIAMDKTWEENLLPVCSQIFRRDIRDSSELTQAEAVKALGFLKKKAAA
>NZ_CP043438.2|WP_149121035.1|1144252_1145686_+|AAA-family-ATPase
MTADFMAVPQNLEAEQSVIGGLLLDDDNSERVQKVLAMLKPESFYSRPHQLIFAEMRQMFRDNKPVDGLTLFDALEGKGLAEQVGGFAYLAEIAKNTPSAANIVAYAASVREAAMERYGINRLTEATELLYSRNGMSATQKYEAIQGIFTQLADHSKTGSRRGLRSFGEVMDDWVADLEKRFDPSGEQRGMSTGIPSLDRLLAPKGLVKGSLFVIGARPKMGKTTLYGQMAINCAIREKKPALMFSLEMPSDQILEKLVGQKSGVNPSIFYMPATDDADDQYQGDYDGDFKKAIATAGRLSEIDMLYIDDTPGLSLAHIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELGCVVVLLTQLNRELEKRVNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGSTGTVYCNQNNGAIHDTDQQAAAAERRGREQQPKKKGGF
>NZ_CP043438.2|WP_149121034.1|1145685_1146030_+|winged-helix-turn-helix-transcriptional-regulator
MTITIRGQILAALRNNPGLSSARIASMIGMTTKKISGPLSTLFADGLIEFEGKHGQRLYRLTSYGMKYAPETIPAMPKGNSKLVQRTEANVICQECRNSPAMRRVLMVWGRVGV
>NZ_CP043438.2|WP_047050266.1|1146026_1146230_+|hypothetical-protein
MTRIRNFGWNRLKLATLSYDELNQLEEQVKLEHACKDGIHMYDKAGRDKLDSLSWAVYNKQKQESAQ
>NZ_CP043438.2|WP_149121033.1|1146226_1146562_+|hypothetical-protein
MSNIDKRAVQAVADLKAGYTLGHADVEIIQQMALDAVTLMDELEAAQTLIDEQREIMRQAASDISYAIFNLTGSDLSRLQPGVVETTDPTDTALIAERNLRAAAAGKGDAS
>NZ_CP043438.2|WP_047359648.1|1147310_1147595_+|DUF4752-family-protein
MDAFKDFSVTDWLFFATMILAWLHLAVKTYGWVIGMLIRRGWRLWNRKDEQTLAMDSFYEAFRLADIEPGQRVVITTESGMTIHIIRPKGDRHA
>NZ_CP043438.2|WP_097414431.1|1147739_1148021_+|hypothetical-protein
MSIDQLCMKQECWALEMLGRVGALTQCPHHEGAYVDEGIEESDIYKYAAGAYKKSNGSHLFESFKEMTDAVKSAYEEHGGNDVCPLCFKRVDD
>NZ_CP043438.2|WP_032104836.1|1148233_1148689_+|hypothetical-protein
MTLPVDGIKLHRGNFAAIGQQIQPLLDAGQCFRLQVKPWREKRSLSQNALSHMWYTEISEYLIARGKTFATPEWVKDAMKHTYLGYESKDRVDVVSGEVTTVQSLRHTSELETGEMYIFLCKVEAWAMNIGCHLTIPQSCEYQQLRDKQEA
>NZ_CP043438.2|WP_149121032.1|1148688_1148859_+|NinE-family-protein
MSTPLSRVITNEIFRVPARRKRKPAVKPSDIPTMKDYTARLVDQKWLRLVARRAHG
>NZ_CP043438.2|WP_149121031.1|1148851_1149463_+|recombination-protein-NinG
MAKLPRRKCAHKACRQWFHPVRDGQVVCSFECASAIGKEQTAKAREAAKQKEAQRQRTEEKAGRQRRAARRNELKPLRHWVQMTQRAFNDWRREMLLAAGYGCISCGTKSAFVWHAGHYRTTAAAPQLRFNPDNLWLQCPVCNVHKSGNIEAYRAALVELIGEERVLSLESNNENHRYTREELDGIRAKARADLRALKQQEAA
>NZ_CP043438.2|WP_063452511.1|1149459_1149684_+|hypothetical-protein
MSKIQYPMTTAAIFDDVVYPVRFDNADKVKQEVEGAVNWFCRWCNEEKAVVKARVLVSCWGKYLNYAQVMEDGV

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Crispr_ID: NZ_CP043438_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043438_2

1566815-1567745

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCGTGCAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTNCAGGCAGCTTAGAAA	CRT

15 spacers

cas7f,cas6f

The CRISPR arrays of NZ_CP043438_2

>merge|NZ_CP043438|2|1566815-1567745|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAATGATTAGTCAGATTGAATGACAATGCCTTAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGCAAACCCCAAATCAGTTTCGAGCACCCTGCCGTTCACTGCCGTACAGGCAGCTTAGAAATGCAAGCTGTCGTAATGCGCCAGCGCTACGGGGTTCACTGCCGTACAGGCAGCTTAGAAAAGCGCATCAACCGACAATAGCCAGGTAACGGAGTTCACTGCCGTACAGGCAGCTTAGAAACCCGCAAACCTCCGACAAAAACGCTTCAAGATGTTCACTGCCGTGCAGGCAGCTTAGAAATACTTTGACAACGTCGAAGACCAGGTCAGAAAGTTCACTGCCGTGCAGGCAGCTTAGAAATGACGCAATGCCGACACACCCGCGTGGCACAGGTTCACTGCCGTGCAGGCAGCTTAGAAATGGCGGCGAAGCGGCAGCAAAGGAACTTCTTAAGTTCACTGCCGTGCAGGCAGCTTAGAAAAGCAATCAGCAAGAAAAAATATTGGCATTGATGTTCACTGCCGTGCAGGCAGCTTAGAAATTCAAGCGCAAAGACCATTGCGCCCGTCTCGTGTTCACTGCCGTGCAGGCAGCTTAGAAAGGAAAAAGTAGCTGCCGCACAGCAAAAAGCCACGTTCACTGCCGTGCAGGCAGCTTAGAAATTCACCAGCTACGGACTACGTTGAGCGCCAGCGTTCACTGCCGTGCAGGCAGCTTAGAAAATGGCGATACGGTTGTTAGCGTCTCGGGTGTTGTTCACTGCCGTGCAGGCAGCTTAGAAAACATTAAGCCCGCTCAATATGAGGCGGAAATAGTTCACTGCCGTACAGGCAGCGTAGAAAATTTGTCTTGCTGGATGTTAGTTACTGAGCACGTTCACCGCCGTGCAGGCAGCATACTCC

>NZ_CP043438|2|1|1566815-1567565|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGATTAGTCAGATTGAATGACAATGCCTTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAAACCCCAAATCAGTTTCGAGCACCCTGCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCAAGCTGTCGTAATGCGCCAGCGCTACGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCGCATCAACCGACAATAGCCAGGTAACGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCCGCAAACCTCCGACAAAAACGCTTCAAGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TACTTTGACAACGTCGAAGACCAGGTCAGAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGCAATGCCGACACACCCGCGTGGCACAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGGCGGCGAAGCGGCAGCAAAGGAACTTCTTAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAATCAGCAAGAAAAAATATTGGCATTGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCAAGCGCAAAGACCATTGCGCCCGTCTCGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GGAAAAAGTAGCTGCCGCACAGCAAAAAGCCAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCACCAGCTACGGACTACGTTGAGCGCCAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA

>NZ_CP043438|2|2|1566815-1567745|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGATTAGTCAGATTGAATGACAATGCCTTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAAACCCCAAATCAGTTTCGAGCACCCTGCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCAAGCTGTCGTAATGCGCCAGCGCTACGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCGCATCAACCGACAATAGCCAGGTAACGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCCGCAAACCTCCGACAAAAACGCTTCAAGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TACTTTGACAACGTCGAAGACCAGGTCAGAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGCAATGCCGACACACCCGCGTGGCACAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGGCGGCGAAGCGGCAGCAAAGGAACTTCTTAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAATCAGCAAGAAAAAATATTGGCATTGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCAAGCGCAAAGACCATTGCGCCCGTCTCGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GGAAAAAGTAGCTGCCGCACAGCAAAAAGCCAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCACCAGCTACGGACTACGTTGAGCGCCAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATGGCGATACGGTTGTTAGCGTCTCGGGTGTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ACATTAAGCCCGCTCAATATGAGGCGGAAATA
GTTCACTGCCGTACAGGCAGCGTAGAAA	ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC
GTTCACCGCCGTGCAGGCAGCATACTCC

>NZ_CP043438|2|1|1566815-1567745|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGATTAGTCAGATTGAATGACAATGCCTTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCAAACCCCAAATCAGTTTCGAGCACCCTGCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCAAGCTGTCGTAATGCGCCAGCGCTACGGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGCGCATCAACCGACAATAGCCAGGTAACGGA
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCCGCAAACCTCCGACAAAAACGCTTCAAGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TACTTTGACAACGTCGAAGACCAGGTCAGAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGCAATGCCGACACACCCGCGTGGCACAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGGCGGCGAAGCGGCAGCAAAGGAACTTCTTAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAATCAGCAAGAAAAAATATTGGCATTGAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCAAGCGCAAAGACCATTGCGCCCGTCTCGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GGAAAAAGTAGCTGCCGCACAGCAAAAAGCCAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTCACCAGCTACGGACTACGTTGAGCGCCAGC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATGGCGATACGGTTGTTAGCGTCTCGGGTGTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ACATTAAGCCCGCTCAATATGAGGCGGAAATA
GTTCACTGCCGTACAGGCAGCGTAGAAA	ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC
GTTCACCGCCGTGCAGGCAGCATACTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043438.2\|WP_006174393.1\|1563133_1563454_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP043438.2\|WP_006809407.1\|1563481_1565761_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP043438.2\|WP_047737743.1\|1572915_1573620_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP043438.2\|WP_023296214.1\|1569702_1570257_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP043438.2\|WP_047737761.1\|1558405_1559362_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
NZ_CP043438.2\|WP_017384842.1\|1559521_1560637_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP043438.2\|WP_026080729.1\|1555764_1556460_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP043438.2\|WP_032647883.1\|1570279_1570753_-\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP043438.2\|WP_015570988.1\|1554687_1555587_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
NZ_CP043438.2\|WP_047737738.1\|1575386_1577153_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP043438.2\|WP_015570984.1\|1560633_1562574_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP043438.2\|WP_006809408.1\|1562644_1562866_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP043438.2\|WP_047737756.1\|1566193_1566637_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149120988.1\|1568694_1569693_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP043438.2\|WP_047737741.1\|1573665_1575387_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP043438.2\|WP_002211347.1\|1572412_1572631_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP043438.2\|WP_017693708.1\|1556750_1558409_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP043438.2\|WP_023324402.1\|1577267_1578236_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP043438.2\|WP_000228469.1\|1578779_1579274_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP043438.2\|WP_023296216.1\|1570749_1571193_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346

Protein	Function_ID	Function_description	E-value
NZ_CP043438.2\|WP_006174393.1\|1563133_1563454_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP043438.2\|WP_006809407.1\|1563481_1565761_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP043438.2\|WP_047737743.1\|1572915_1573620_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	5.46675e-137
NZ_CP043438.2\|WP_023296214.1\|1569702_1570257_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.56901e-94
NZ_CP043438.2\|WP_047737761.1\|1558405_1559362_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.32567e-127
NZ_CP043438.2\|WP_017384842.1\|1559521_1560637_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP043438.2\|WP_026080729.1\|1555764_1556460_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
NZ_CP043438.2\|WP_032647883.1\|1570279_1570753_-\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
NZ_CP043438.2\|WP_015570988.1\|1554687_1555587_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
NZ_CP043438.2\|WP_047737738.1\|1575386_1577153_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP043438.2\|WP_015570984.1\|1560633_1562574_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP043438.2\|WP_006809408.1\|1562644_1562866_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP043438.2\|WP_149120988.1\|1568694_1569693_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP043438.2\|WP_047737741.1\|1573665_1575387_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP043438.2\|WP_002211347.1\|1572412_1572631_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP043438.2\|WP_017693708.1\|1556750_1558409_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP043438.2\|WP_023324402.1\|1577267_1578236_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP043438.2\|WP_000228469.1\|1578779_1579274_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP043438.2\|WP_023296216.1\|1570749_1571193_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48

>NZ_CP043438.2|WP_047737756.1|1566193_1566637_+|hypothetical-protein
MNMENQSISQLYSELSLNPDLPTLVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDETERLKEKEWLLEDTETKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVAAPECGKPVVHIIN
>NZ_CP043438.2|WP_006809407.1|1563481_1565761_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>NZ_CP043438.2|WP_006174393.1|1563133_1563454_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP043438.2|WP_006809408.1|1562644_1562866_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP043438.2|WP_015570984.1|1560633_1562574_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP043438.2|WP_017384842.1|1559521_1560637_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP043438.2|WP_047737761.1|1558405_1559362_-|DUF535-domain-containing-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGDLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>NZ_CP043438.2|WP_017693708.1|1556750_1558409_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>NZ_CP043438.2|WP_026080729.1|1555764_1556460_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>NZ_CP043438.2|WP_015570988.1|1554687_1555587_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>NZ_CP043438.2|WP_149120988.1|1568694_1569693_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADTDTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKIIVRVTGSKTWTFDAYCYALRDFSASDKDLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP043438.2|WP_023296214.1|1569702_1570257_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHQALSELESLAWRKGLSDYCLCSAIKAVPEVYHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>NZ_CP043438.2|WP_032647883.1|1570279_1570753_-|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>NZ_CP043438.2|WP_023296216.1|1570749_1571193_-|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP043438.2|WP_002211347.1|1572412_1572631_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP043438.2|WP_047737743.1|1572915_1573620_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPKQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRHEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEISRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>NZ_CP043438.2|WP_047737741.1|1573665_1575387_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFAYDKQAQYALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPNASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>NZ_CP043438.2|WP_047737738.1|1575386_1577153_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVLSRRWLMISRVLGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHAGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLMIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLANPERGEVTLNTNDPVTIEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPSSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHLLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>NZ_CP043438.2|WP_023324402.1|1577267_1578236_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLHIRDTQNTDNVETLEVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP043438.2|WP_000228469.1|1578779_1579274_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR

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Crispr_ID: NZ_CP043438_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043438_3

1571432-1572240

Unclear

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR

13 spacers

cas6f,cas7f

The CRISPR arrays of NZ_CP043438_3

>merge|NZ_CP043438|3|1571432-1572240|CRISPRCasFinder,CRT,PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAAATTTTCCGGAAGGGGAATAAAATTCTTCTTTTGTGCACTGCCGTACAGGCAGCTTAGAAAATAAGCCTCCTGCTGGGGCTGGCGTTGCCGGTGTGCACTGCCGTACAGGCAGCTTAGAAAGGTGATGTGAGACAGAAATGGGACACACAAAGCGTGCACTGCCGTACAGGCAGCTTAGAAAGGTATATTCAGCCTCCCCCGTCACCACTTCAAGTGCACTGCCGTACAGGCAGCTTAGAAAGTCACCAGATTCCGATGACCAGACGATAATCGGTGCACTGCCGTACAGGCAGCTTAGAAATGGCTCGCCAGCTCGATGGCCTCAAAAGCAAAGTGCACTGCCGTACAGGCAGCTTAGAAAGATGAGCTCGGTTCTATTCCGTATTCGTCAATGTGCACTGCCGTACAGGCAGCTTAGAAACCAATGAACAGCGCAAAGGGCCTGAGCACTGTGTGCACTGCCGTACAGGCAGCTTAGAAATCGACGAAAAGAGGGGTCTACGCGACCCCCAAGTGCACTGCCGTACAGGCAGCTTAGAAATTCGTCGTGCAGCTGGCGCATCTCGCTCTCAAGTGCACTGCCGTACAGGCAGCTTAGAAATGTACCGGCACCAGACCGCTGTTTAGCAGAACGTGCACTGCCGTACAGGCTGCTTAGAAACTGCGCGCGAAGTTTCATTTAAGATGCAAATTGTGCACTGCCGTACAGGCAGCTTAGAAAAAGTCGGCCTGTCCTCCTGCTCCGTAACGCCAGTGCACTGCCTAAGAGGCAGCTTAGAAA

>NZ_CP043438|3|3|1571432-1572240|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATTTTCCGGAAGGGGAATAAAATTCTTCTTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATAAGCCTCCTGCTGGGGCTGGCGTTGCCGGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTGATGTGAGACAGAAATGGGACACACAAAGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTATATTCAGCCTCCCCCGTCACCACTTCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTCACCAGATTCCGATGACCAGACGATAATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTCGCCAGCTCGATGGCCTCAAAAGCAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGAGCTCGGTTCTATTCCGTATTCGTCAAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCAATGAACAGCGCAAAGGGCCTGAGCACTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCGACGAAAAGAGGGGTCTACGCGACCCCCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCGTCGTGCAGCTGGCGCATCTCGCTCTCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGTACCGGCACCAGACCGCTGTTTAGCAGAAC
GTGCACTGCCGTACAGGCTGCTTAGAAA	CTGCGCGCGAAGTTTCATTTAAGATGCAAATT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AAGTCGGCCTGTCCTCCTGCTCCGTAACGCCA
GTGCACTGCCTAAGAGGCAGCTTAGAAA

>NZ_CP043438|3|2|1571432-1572240|CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATTTTCCGGAAGGGGAATAAAATTCTTCTTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATAAGCCTCCTGCTGGGGCTGGCGTTGCCGGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTGATGTGAGACAGAAATGGGACACACAAAGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTATATTCAGCCTCCCCCGTCACCACTTCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTCACCAGATTCCGATGACCAGACGATAATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTCGCCAGCTCGATGGCCTCAAAAGCAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGAGCTCGGTTCTATTCCGTATTCGTCAAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCAATGAACAGCGCAAAGGGCCTGAGCACTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCGACGAAAAGAGGGGTCTACGCGACCCCCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCGTCGTGCAGCTGGCGCATCTCGCTCTCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGTACCGGCACCAGACCGCTGTTTAGCAGAAC
GTGCACTGCCGTACAGGCTGCTTAGAAA	CTGCGCGCGAAGTTTCATTTAAGATGCAAATT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AAGTCGGCCTGTCCTCCTGCTCCGTAACGCCA
GTGCACTGCCTAAGAGGCAGCTTAGAAA

>NZ_CP043438|3|2|1571673-1572180|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTCACCAGATTCCGATGACCAGACGATAATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTCGCCAGCTCGATGGCCTCAAAAGCAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGAGCTCGGTTCTATTCCGTATTCGTCAAT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CCAATGAACAGCGCAAAGGGCCTGAGCACTGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCGACGAAAAGAGGGGTCTACGCGACCCCCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCGTCGTGCAGCTGGCGCATCTCGCTCTCAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGTACCGGCACCAGACCGCTGTTTAGCAGAAC
GTGCACTGCCGTACAGGCTGCTTAGAAA	CTGCGCGCGAAGTTTCATTTAAGATGCAAATT
GTGCACTGCCGTACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043438.2\|WP_006174393.1\|1563133_1563454_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP043438.2\|WP_006809407.1\|1563481_1565761_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP043438.2\|WP_047737743.1\|1572915_1573620_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP043438.2\|WP_039271201.1\|1579409_1583078_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236669
NZ_CP043438.2\|WP_023296214.1\|1569702_1570257_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP043438.2\|WP_017384842.1\|1559521_1560637_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP043438.2\|WP_023296220.1\|1583829_1585173_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP043438.2\|WP_032647883.1\|1570279_1570753_-\|RES-domain-containing-protein	unknown	unknown	gnl\|CDD\|227941
NZ_CP043438.2\|WP_015570984.1\|1560633_1562574_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP043438.2\|WP_006809408.1\|1562644_1562866_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NZ_CP043438.2\|WP_047737756.1\|1566193_1566637_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043438.2\|WP_149120988.1\|1568694_1569693_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP043438.2\|WP_003858270.1\|1583205_1583820_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP043438.2\|WP_003858266.1\|1585265_1586558_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP043438.2\|WP_047737741.1\|1573665_1575387_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP043438.2\|WP_002211347.1\|1572412_1572631_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP043438.2\|WP_047737738.1\|1575386_1577153_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP043438.2\|WP_023324402.1\|1577267_1578236_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP043438.2\|WP_000228469.1\|1578779_1579274_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP043438.2\|WP_023296216.1\|1570749_1571193_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|131346

Protein	Function_ID	Function_description	E-value
NZ_CP043438.2\|WP_006174393.1\|1563133_1563454_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
NZ_CP043438.2\|WP_006809407.1\|1563481_1565761_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP043438.2\|WP_047737743.1\|1572915_1573620_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	5.46675e-137
NZ_CP043438.2\|WP_039271201.1\|1579409_1583078_+\|hypothetical-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP043438.2\|WP_023296214.1\|1569702_1570257_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.56901e-94
NZ_CP043438.2\|WP_017384842.1\|1559521_1560637_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP043438.2\|WP_023296220.1\|1583829_1585173_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP043438.2\|WP_032647883.1\|1570279_1570753_-\|RES-domain-containing-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	4.73888e-27
NZ_CP043438.2\|WP_015570984.1\|1560633_1562574_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP043438.2\|WP_006809408.1\|1562644_1562866_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
NZ_CP043438.2\|WP_149120988.1\|1568694_1569693_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP043438.2\|WP_003858270.1\|1583205_1583820_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	8.10736e-117
NZ_CP043438.2\|WP_003858266.1\|1585265_1586558_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP043438.2\|WP_047737741.1\|1573665_1575387_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP043438.2\|WP_002211347.1\|1572412_1572631_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NZ_CP043438.2\|WP_047737738.1\|1575386_1577153_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP043438.2\|WP_023324402.1\|1577267_1578236_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP043438.2\|WP_000228469.1\|1578779_1579274_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NZ_CP043438.2\|WP_023296216.1\|1570749_1571193_-\|DUF2384-domain-containing-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	2.89096e-48

>NZ_CP043438.2|WP_023296216.1|1570749_1571193_-|DUF2384-domain-containing-protein
MRTWVPAQRPADNTLWRYAGLPASRGMRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>NZ_CP043438.2|WP_032647883.1|1570279_1570753_-|RES-domain-containing-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSINIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFRKALNSVELLPFNFDTRLAEKTAP
>NZ_CP043438.2|WP_023296214.1|1569702_1570257_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHQALSELESLAWRKGLSDYCLCSAIKAVPEVYHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>NZ_CP043438.2|WP_149120988.1|1568694_1569693_+|type-I-F-CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWQGETWQPIRIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADTDTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFLWRNRVGAEKIIVRVTGSKTWTFDAYCYALRDFSASDKDLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP043438.2|WP_047737756.1|1566193_1566637_+|hypothetical-protein
MNMENQSISQLYSELSLNPDLPTLVERCNLLTEILLDCHSLPQTQPVCRCLGAYLDVVKTELAESMSDFRVVEFDDETERLKEKEWLLEDTETKCDYCRALNHVLLVSHFDREMLPHLTGLLHDITHSMAADVAAPECGKPVVHIIN
>NZ_CP043438.2|WP_006809407.1|1563481_1565761_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>NZ_CP043438.2|WP_006174393.1|1563133_1563454_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>NZ_CP043438.2|WP_006809408.1|1562644_1562866_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>NZ_CP043438.2|WP_015570984.1|1560633_1562574_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NZ_CP043438.2|WP_017384842.1|1559521_1560637_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>NZ_CP043438.2|WP_002211347.1|1572412_1572631_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP043438.2|WP_047737743.1|1572915_1573620_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPKQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRHEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRSTNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEISRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>NZ_CP043438.2|WP_047737741.1|1573665_1575387_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFAYDKQAQYALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPNASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>NZ_CP043438.2|WP_047737738.1|1575386_1577153_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MEKTRQQELTRWLKQQSVLSRRWLMISRVLGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHAGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLMIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLANPERGEVTLNTNDPVTIEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPSSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHLLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>NZ_CP043438.2|WP_023324402.1|1577267_1578236_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLHIRDTQNTDNVETLEVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>NZ_CP043438.2|WP_000228469.1|1578779_1579274_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP043438.2|WP_039271201.1|1579409_1583078_+|hypothetical-protein
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDEDEYEDEYEEEDEAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEEEQIEYRGAAVDPDDVLFSGHRATPGEYDEYDPLLHGHSVTEPVAAAAAATTAAQAHVAPVEAVMPSSPVPAPESAIQQPQVDWQTAPGVHTPEPTIAPEPESYIPVQQEQWQQPYQTPEPASEPQQPYQAYTPEPAEPEQPYVAPVSEPEVVEEAKPSRPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVVKAPSASVAPVDPAPAVASRAETVKQATAAAAASAPLFSPATDGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADELHQDELARQFAAQQTQRYGNEYQHDVHSQQDEDDAAEAELARQFAATQQQRYSGEQPSGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQAPAPQVNAQPQQPAPQAYAQPHTPSAQPPQPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDTQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP043438.2|WP_003858270.1|1583205_1583820_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAIACALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSSNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>NZ_CP043438.2|WP_023296220.1|1583829_1585173_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>NZ_CP043438.2|WP_003858266.1|1585265_1586558_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVLENYQQADGRIEIPEVLRPYMKGQQFIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NZ_CP043438.2	3410478-3410509	0	1.0

1. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to position: 3410478-3410509, mismatch: 0, identity: 1.0

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ataagcctcctgctggggctggcgttgccggt	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043438_2	2.5\|1567084\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567084-1567115	32	CP051275	Salmonella phage SW-37, complete genome	11866-11897	1	0.969
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	MN855664	Bacteriophage sp. isolate 275, complete genome	3508-3540	1	0.97
NZ_CP043438_2	2.5\|1567084\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567084-1567115	32	JQ288021	Salmonella phage SPN3UB, complete genome	27308-27339	2	0.938
NZ_CP043438_2	2.5\|1567084\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567084-1567115	32	KF879864	UNVERIFIED: Salmonella phage KK-2013, partial genome	26293-26324	2	0.938
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	CP051279	Salmonella phage ST-35, complete genome	17843-17875	2	0.939
NZ_CP043438_3	3.13\|1572181\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1572181-1572212	32	MN855664	Bacteriophage sp. isolate 275, complete genome	1196-1227	2	0.938
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	227275-227306	6	0.812
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	219039-219070	6	0.812
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2420634-2420665	7	0.781
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1206670-1206701	7	0.781
NZ_CP043438_3	3.8\|1571881\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1571881-1571912	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1627950-1627981	7	0.781
NZ_CP043438_3	3.8\|1571881\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1571881-1571912	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1506485-1506516	7	0.781
NZ_CP043438_3	3.8\|1571881\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1571881-1571912	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	625883-625914	7	0.781
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	302052-302083	7	0.781
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	JN698995	Mycobacterium phage Dori, complete genome	7662-7693	8	0.75
NZ_CP043438_2	2.9\|1567325\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567325-1567356	32	NZ_CP027564	Weissella confusa strain VTT E-133279 plasmid pWconfE3279-1, complete sequence	1672-1703	8	0.75
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NZ_CP020332	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence	157201-157232	8	0.75
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	459167-459198	8	0.75
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	73615-73646	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	495489-495520	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MT108724	Pseudomonas phage Epa2, complete genome	3844-3875	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MT118288	Pseudomonas phage Epa4, complete genome	18570-18601	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MK837012	Pseudomonas virus Pa223, complete genome	38065-38096	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MN562749	Pseudomonas phage U47, complete genome	35742-35773	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MH973725	Pseudomonas phage SaPL, complete genome	35149-35180	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MT119371	Pseudomonas phage oldone, complete genome	38058-38089	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MG589385	Pseudomonas phage phiPA01_302, complete genome	38370-38401	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MK837011	Pseudomonas virus Pa222, complete genome	38071-38102	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NC_022971	Pseudomonas phage phiIBB-PAA2, complete genome	37728-37759	8	0.75
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	LN610578	Pseudomonas phage vB_PaeP_C2-10_Ab22, complete genome	38187-38218	8	0.75
NZ_CP043438_3	3.12\|1572121\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572121-1572152	32	NZ_CP032411	Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence	84042-84073	8	0.75
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	154883-154914	9	0.719
NZ_CP043438_2	2.5\|1567084\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567084-1567115	32	NZ_CP032628	Lactococcus sp. 1JSPR-7 plasmid unnamed1, complete sequence	22998-23029	9	0.719
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	NZ_CP047899	Pseudarthrobacter sp. YJ56 plasmid unnamed1, complete sequence	62088-62119	9	0.719
NZ_CP043438_2	2.8\|1567264\|33\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567264-1567296	33	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	133811-133843	9	0.727
NZ_CP043438_2	2.8\|1567264\|33\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567264-1567296	33	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	131105-131137	9	0.727
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	101798-101829	9	0.719
NZ_CP043438_3	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	124030-124061	9	0.719
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	NC_006949	Enterobacteria phage ES18, complete genome	26210-26242	9	0.727
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	AY736146	Salmonella typhimurium bacteriophage ES18, complete sequence	26210-26242	9	0.727
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	MH370364	Salmonella phage S107, complete genome	27145-27177	9	0.727
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	MH370382	Salmonella phage S135, complete genome	27145-27177	9	0.727
NZ_CP043438_3	3.3\|1571580\|33\|NZ_CP043438\|CRISPRCasFinder,CRT	1571580-1571612	33	MH370383	Salmonella phage S137, complete genome	27145-27177	9	0.727
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	30347-30378	9	0.719
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	288236-288267	9	0.719
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NZ_CP042915	Rhodococcus qingshengii strain RL1 plasmid unnamed2	253-284	9	0.719
NZ_CP043438_3	3.11\|1572061\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572061-1572092	32	NZ_CP019446	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence	88768-88799	9	0.719
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	NC_049453	Klebsiella phage ST13-OXA48phi12.1, complete genome	2386-2417	10	0.688
NZ_CP043438_2	2.3\|1566964\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1566964-1566995	32	MK416018	Klebsiella phage ST147-VIM1phi7.1, complete genome	31725-31756	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MH590604	Microbacterium phage ColaCorta, complete genome	14170-14201	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MT553340	Microbacterium phage Glamour, complete genome	14171-14202	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MN096378	Microbacterium phage MCubed, complete genome	14198-14229	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MH513982	Microbacterium phage Sansa, complete genome	14194-14225	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MK894432	Microbacterium phage Finny, complete genome	14170-14201	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MH590606	Microbacterium phage Andromedas, complete genome	14170-14201	10	0.688
NZ_CP043438_2	2.6\|1567144\|32\|NZ_CP043438\|PILER-CR,CRISPRCasFinder,CRT	1567144-1567175	32	MG839027	Microbacterium phage Eleri, complete genome	14183-14214	10	0.688
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	571512-571543	10	0.688
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MT114163	Mycobacterium phage Settecandela, complete genome	65315-65346	11	0.656
NZ_CP043438_3	3.10\|1572001\|32\|NZ_CP043438\|CRISPRCasFinder,CRT,PILER-CR	1572001-1572032	32	MK937592	Mycobacterium phage Phrappuccino, complete genome	65315-65346	11	0.656

1. spacer 2.5|1567084|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

cccgcaaacctccgacaaaaacgcttcaagat	CRISPR spacer
cccgcaaacctccgacaaaaacgcctcaagat	Protospacer
************************.*******

2. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to MN855664 (Bacteriophage sp. isolate 275, complete genome) position: , mismatch: 1, identity: 0.97

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggttatgtgagacagaaatgggacacacaaagc	Protospacer
*** *****************************

3. spacer 2.5|1567084|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 2, identity: 0.938

cccgcaaacctccgacaaaaacgcttcaagat	CRISPR spacer
cccgcaaacttccgacaaaaacgcctcaagat	Protospacer
*********.**************.*******

4. spacer 2.5|1567084|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to KF879864 (UNVERIFIED: Salmonella phage KK-2013, partial genome) position: , mismatch: 2, identity: 0.938

cccgcaaacctccgacaaaaacgcttcaagat	CRISPR spacer
cccgcaaacttccgacaaaaacgcctcaagat	Protospacer
*********.**************.*******

5. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to CP051279 (Salmonella phage ST-35, complete genome) position: , mismatch: 2, identity: 0.939

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgatgtgagacagaactgagacacacaaagc	Protospacer
***************** **.************

6. spacer 3.13|1572181|32|NZ_CP043438|CRISPRCasFinder,CRT matches to MN855664 (Bacteriophage sp. isolate 275, complete genome) position: , mismatch: 2, identity: 0.938

aagtcggcctgtcctcctgctccgtaacgcca	CRISPR spacer
acgtcggcctgttctcctgctccgtaacgcca	Protospacer
* **********.*******************

7. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.812

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
atagcgctcctgctcgggctggcggtgccgct	Protospacer
***.  ******** ********* ***** *

8. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 6, identity: 0.812

ataagcctc----ctgctggggctggcgttgccggt	CRISPR spacer
----gcctcggcgctgctgggggtggcgttgtcggt	Protospacer
    *****    ********* ********.****

9. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

tgcaagctgtcgtaatgcgccagcg-ctacggg	CRISPR spacer
tacaagctgttggaatgcgccagcgaatgcag-	Protospacer
*.********.* ************  *.*.*

10. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

tgcaagctgtcgtaatgcgccagcg-ctacggg	CRISPR spacer
tacaagctgttggaatgcgccagcgaatgcag-	Protospacer
*.********.* ************  *.*.*

11. spacer 3.8|1571881|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

--ccaatgaacagcgcaaagggcctgagcactgt	CRISPR spacer
aacca--gaacagcgccaagggcctgaacatcga	Protospacer
  ***  ********* **********.**..*

12. spacer 3.8|1571881|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

--ccaatgaacagcgcaaagggcctgagcactgt	CRISPR spacer
aacca--gaacagcgccaagggcctgaacatcga	Protospacer
  ***  ********* **********.**..*

13. spacer 3.8|1571881|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.781

--ccaatgaacagcgcaaagggcctgagcactgt	CRISPR spacer
aacca--gaacagcgccaagggcctgaacatcga	Protospacer
  ***  ********* **********.**..*

14. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ttcgccgagcagctggcgcatctcggtgacgc	Protospacer
****.** ***************** *  *.

15. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to JN698995 (Mycobacterium phage Dori, complete genome) position: , mismatch: 8, identity: 0.75

tgcaagctgtcgtaatgcgccagcgctacggg	CRISPR spacer
tcgacgttgtcgtaatgcgcctgcgcttcgtc	Protospacer
*  * *.************** ***** **

16. spacer 2.9|1567325|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027564 (Weissella confusa strain VTT E-133279 plasmid pWconfE3279-1, complete sequence) position: , mismatch: 8, identity: 0.75

--agcaatcagcaagaaaaaatattggcattgat	CRISPR spacer
gaagcgg--agcaacaaaaagtattggcattgga	Protospacer
  ***..  ***** *****.***********.

17. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP020332 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence) position: , mismatch: 8, identity: 0.75

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ctgaagatcctgctggggctggcattggcggg	Protospacer
 *.*.  ****************.*** ***

18. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 8, identity: 0.75

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
gtggccgccctgctggggctggcggtggcggt	Protospacer
.*.. * .**************** ** ****

19. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NC_015170 (Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence) position: , mismatch: 8, identity: 0.75

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ctgcgcggcctgctggggctggcgctgctggc	Protospacer
 *. **  ****************.***.**.

20. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
gaagtcgcgcagctggcgcatctcgcccgcgg	Protospacer
   ****.******************.* *..

21. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MT108724 (Pseudomonas phage Epa2, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

22. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MT118288 (Pseudomonas phage Epa4, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

23. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MK837012 (Pseudomonas virus Pa223, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

24. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MN562749 (Pseudomonas phage U47, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

25. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MH973725 (Pseudomonas phage SaPL, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

26. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MT119371 (Pseudomonas phage oldone, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

27. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MG589385 (Pseudomonas phage phiPA01_302, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

28. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MK837011 (Pseudomonas virus Pa222, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

29. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NC_022971 (Pseudomonas phage phiIBB-PAA2, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

30. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to LN610578 (Pseudomonas phage vB_PaeP_C2-10_Ab22, complete genome) position: , mismatch: 8, identity: 0.75

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ctcaaccagcagctggcgcttctcgctgtcac	Protospacer
.**. *  *********** ******* ***

31. spacer 3.12|1572121|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032411 (Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgcgcgaagtttcatttaagatgcaaatt	CRISPR spacer
cttccatcgaagtttcttttaagaagcaaaca	Protospacer
** *   ********* ******* *****.

32. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgcaagctgtcgtaatgcgccagcgctacggg	CRISPR spacer
taaaagctgtcgtagtacgccagcgcgggatg	Protospacer
*. ***********.*.********* . . *

33. spacer 2.5|1567084|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032628 (Lactococcus sp. 1JSPR-7 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccgcaaacctccgacaaaaacgcttcaagat	CRISPR spacer
ttcaaaaagctcggacaaaaacgcttcagtgt	Protospacer
..*. *** *** ***************. .*

34. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047899 (Pseudarthrobacter sp. YJ56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
gatattgacaacgtcgcagacgaggtcgagac	Protospacer
 *. ************ **** *****...*

35. spacer 2.8|1567264|33|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 9, identity: 0.727

tggcggcgaagcggcagcaaaggaacttcttaa	CRISPR spacer
ggccggcggggcggcagcaaaggaacttgcggg	Protospacer
 * *****..****************** . ..

36. spacer 2.8|1567264|33|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 9, identity: 0.727

tggcggcgaagcggcagcaaaggaacttcttaa	CRISPR spacer
ggccggcggggcggcagcaaaggaacttgcggg	Protospacer
 * *****..****************** . ..

37. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ctcgacgccctgctggggctggcggcgccgga	Protospacer
 * ..* .**************** .*****

38. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
gcgagcctcctgctggtgctggccttcgtgct	Protospacer
...************* ****** **  .* *

39. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to NC_006949 (Enterobacteria phage ES18, complete genome) position: , mismatch: 9, identity: 0.727

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgacgtgagacaaaaatgggacgtaaaggct	Protospacer
*****.********.*********..* *.. .

40. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to AY736146 (Salmonella typhimurium bacteriophage ES18, complete sequence) position: , mismatch: 9, identity: 0.727

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgacgtgagacaaaaatgggacgtaaaggct	Protospacer
*****.********.*********..* *.. .

41. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 9, identity: 0.727

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgacgtgagacaaaaatgggacgtaaaggct	Protospacer
*****.********.*********..* *.. .

42. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 9, identity: 0.727

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgacgtgagacaaaaatgggacgtaaaggct	Protospacer
*****.********.*********..* *.. .

43. spacer 3.3|1571580|33|NZ_CP043438|CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 9, identity: 0.727

ggtgatgtgagacagaaatgggacacacaaagc	CRISPR spacer
ggtgacgtgagacaaaaatgggacgtaaaggct	Protospacer
*****.********.*********..* *.. .

44. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 9, identity: 0.719

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
catttcctgctgctggcgcatctcgctcgcgg	Protospacer
. . ** *** ***************** *..

45. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 9, identity: 0.719

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
ccggtcgtgcagcttgcggatctcgccccgca	Protospacer
.. *********** *** *******.*.  *

46. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
acgattgtgccgctggcgcatgtcgctctgga	Protospacer
 . .*.**** ********** ******* .*

47. spacer 3.11|1572061|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019446 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence) position: , mismatch: 9, identity: 0.719

tgtaccggcaccagaccgctgtttagcagaac	CRISPR spacer
tcctggggcgccagaccgctgttcagcagtgc	Protospacer
* .   ***.*************.***** .*

48. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to NC_049453 (Klebsiella phage ST13-OXA48phi12.1, complete genome) position: , mismatch: 10, identity: 0.688

tgcaagctgtcgtaatgcgccagcgctacggg	CRISPR spacer
taattaatgtcgtactgcgccagcgccacgac	Protospacer
*.   . ******* ***********.***.

49. spacer 2.3|1566964|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MK416018 (Klebsiella phage ST147-VIM1phi7.1, complete genome) position: , mismatch: 10, identity: 0.688

tgcaagctgtcgtaatgcgccagcgctacggg	CRISPR spacer
taattaatgtcgtactgcgccagcgccacgac	Protospacer
*.   . ******* ***********.***.

50. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MH590604 (Microbacterium phage ColaCorta, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

51. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MT553340 (Microbacterium phage Glamour, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

52. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MN096378 (Microbacterium phage MCubed, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

53. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MH513982 (Microbacterium phage Sansa, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

54. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MK894432 (Microbacterium phage Finny, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

55. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MH590606 (Microbacterium phage Andromedas, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

56. spacer 2.6|1567144|32|NZ_CP043438|PILER-CR,CRISPRCasFinder,CRT matches to MG839027 (Microbacterium phage Eleri, complete genome) position: , mismatch: 10, identity: 0.688

tactttgacaacgtcgaagaccaggtcagaaa	CRISPR spacer
cttgttgacgtcgtcgaagaccaggtcgccac	Protospacer
. . *****. ****************.  *

57. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
gatcccctgcagctcgcgcagctcgctctccg	Protospacer
  . .* ******* ***** ********* .

58. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 11, identity: 0.656

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
catgtcgcgcagcaggcgcatctcgccggggc	Protospacer
. .****.***** ************.   .

59. spacer 3.10|1572001|32|NZ_CP043438|CRISPRCasFinder,CRT,PILER-CR matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 11, identity: 0.656

ttcgtcgtgcagctggcgcatctcgctctcaa	CRISPR spacer
catgtcgcgcagcaggcgcatctcgccggggc	Protospacer
. .****.***** ************.   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1130920 : 1180095

Cronobacter_phage(23.33%)

head,integrase,terminase,tail

attL 1130861:1130911|attR 1180391:1180441

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1130861:1130911	attL	NA	NA	NA	NA
WP_149121054.1\|1130920_1131976_-\|integrase	tyrosine-type recombinase/integrase	G8C7S0	Escherichia_phage	7.5e-206	98.6
WP_071886183.1\|1131960_1132296_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149121053.1\|1132402_1132729_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	6.2e-42	78.1
WP_149121052.1\|1132738_1132978_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_149121051.1\|1132940_1133303_-	DUF2591 family protein	G8C7S4	Escherichia_phage	4.3e-52	83.2
WP_149121050.1\|1133302_1133521_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.0e-16	57.7
WP_149121049.1\|1133612_1133804_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.1e-14	66.1
WP_149121048.1\|1133800_1134118_-	hypothetical protein	A0A222YY67	Escherichia_phage	4.6e-34	63.8
WP_109956910.1\|1134114_1134333_-	hypothetical protein	NA	NA	NA	NA
WP_149121047.1\|1134329_1134989_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.9e-123	95.0
WP_149121046.1\|1134998_1136333_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	1.3e-34	36.2
WP_149121045.1\|1136329_1136482_-	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	2.3e-07	52.9
WP_149121044.1\|1136478_1136907_-	regulator	G8C7S8	Escherichia_phage	1.2e-72	96.5
WP_047352296.1\|1136903_1137584_-	YqaJ viral recombinase family protein	M9NZE1	Enterobacteria_phage	3.8e-126	94.2
WP_149121043.1\|1137580_1138498_-	recombinase RecT	M9NZA6	Enterobacteria_phage	3.1e-171	99.3
WP_063418855.1\|1138507_1138792_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.9e-48	95.7
WP_149121042.1\|1138799_1139768_-	hypothetical protein	M9P0E1	Enterobacteria_phage	8.7e-92	96.9
WP_149121041.1\|1139838_1140036_-	DUF1482 family protein	NA	NA	NA	NA
WP_149121040.1\|1140328_1140514_-	hypothetical protein	NA	NA	NA	NA
WP_149121039.1\|1141213_1141510_-	hypothetical protein	NA	NA	NA	NA
WP_032656806.1\|1141520_1142225_-	helix-turn-helix transcriptional regulator	A0A2H4FNG6	Salmonella_phage	1.5e-88	66.7
WP_149121038.1\|1142329_1142563_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	8.6e-22	66.7
WP_149121037.1\|1142592_1143135_+	regulator	M9NZI6	Enterobacteria_phage	2.1e-87	91.1
WP_015571544.1\|1143224_1143371_+	hypothetical protein	NA	NA	NA	NA
WP_149121036.1\|1143363_1144263_+	DNA replication protein	Q37929	Escherichia_phage	2.1e-79	54.2
WP_149121035.1\|1144252_1145686_+	AAA family ATPase	Q716D2	Shigella_phage	2.0e-230	86.9
WP_149121034.1\|1145685_1146030_+	winged helix-turn-helix transcriptional regulator	G8C7U7	Escherichia_phage	4.2e-57	98.2
WP_047050266.1\|1146026_1146230_+	hypothetical protein	R9TRD3	Aeromonas_phage	1.5e-22	78.1
WP_149121033.1\|1146226_1146562_+	hypothetical protein	G8C7V0	Escherichia_phage	5.1e-07	64.0
WP_047359648.1\|1147310_1147595_+	DUF4752 family protein	K7PHN1	Enterobacterial_phage	8.1e-22	45.7
WP_097414431.1\|1147739_1148021_+	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	2.3e-21	51.6
WP_032104836.1\|1148233_1148689_+	hypothetical protein	I6PD71	Cronobacter_phage	4.1e-60	66.9
WP_149121032.1\|1148688_1148859_+	NinE family protein	K7P7K0	Enterobacteria_phage	1.2e-20	94.3
WP_149121031.1\|1148851_1149463_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.9e-61	72.4
WP_063452511.1\|1149459_1149684_+	hypothetical protein	Q5G8R9	Enterobacteria_phage	4.8e-30	80.6
WP_045332081.1\|1149680_1149821_+	YlcG family protein	K7PHH3	Enterobacteria_phage	2.0e-05	71.0
WP_149121030.1\|1149817_1150507_+	antiterminator	I6PDF8	Cronobacter_phage	2.9e-57	51.9
WP_063963200.1\|1150756_1151263_+	HNH endonuclease	A0A249Y0J7	Salmonella_phage	1.7e-14	36.2
WP_048961198.1\|1151514_1151886_+	hypothetical protein	A0A2D1GNJ3	Pseudomonas_phage	1.3e-06	32.4
WP_149121029.1\|1151869_1152514_+	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	1.2e-36	43.3
WP_149121028.1\|1152501_1152978_+	Rz lytic protein	NA	NA	NA	NA
WP_149121026.1\|1153256_1153898_-	hypothetical protein	NA	NA	NA	NA
WP_149121025.1\|1153952_1154171_+	hypothetical protein	NA	NA	NA	NA
WP_149121024.1\|1154178_1154613_+	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	2.9e-47	74.8
WP_149121023.1\|1154609_1155863_+\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	4.0e-214	97.3
WP_149121022.1\|1156040_1157390_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	3.2e-233	88.0
WP_149121021.1\|1157349_1158276_+\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	2.0e-162	92.2
WP_149121020.1\|1158278_1159544_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	8.7e-209	86.2
WP_023300384.1\|1159556_1160006_+	hypothetical protein	H6WRT3	Salmonella_phage	5.5e-65	85.9
WP_063928195.1\|1160023_1161100_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	5.9e-190	91.6
WP_023296439.1\|1161109_1161403_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	1.7e-43	91.8
WP_149121019.1\|1161465_1161864_+	hypothetical protein	G0ZNE1	Cronobacter_phage	5.0e-54	78.5
WP_167497059.1\|1161973_1162465_+	HNH endonuclease	A0A2D2W633	Pectobacterium_phage	2.5e-23	44.7
WP_149121017.1\|1162510_1162684_+	50S ribosomal protein L13	I6R0P9	Salmonella_phage	8.6e-11	48.2
WP_063158903.1\|1162683_1163040_+	hypothetical protein	G0ZNE2	Cronobacter_phage	9.4e-28	57.3
WP_032652844.1\|1163042_1163411_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.6e-46	77.0
WP_063946072.1\|1163407_1163791_+	hypothetical protein	F1C5E4	Cronobacter_phage	1.6e-41	63.8
WP_063946073.1\|1163854_1164598_+	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	6.9e-73	82.3
WP_058681664.1\|1164655_1165330_+	hypothetical protein	G0ZNE7	Cronobacter_phage	5.9e-55	50.2
WP_032668722.1\|1165439_1165802_+	hypothetical protein	NA	NA	NA	NA
WP_149121016.1\|1165859_1168376_+	tape measure protein	A0A1B1W284	Salmonella_phage	8.6e-99	37.2
WP_047737995.1\|1168375_1168873_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.3e-88	90.3
WP_149121015.1\|1168872_1169343_+	hypothetical protein	F1C5F1	Cronobacter_phage	1.7e-77	91.7
WP_149121386.1\|1169356_1169722_+	NlpC/P60 family protein	F1C5F2	Cronobacter_phage	1.1e-63	91.6
WP_047737989.1\|1169708_1172186_+\|tail	phage tail protein	F1C5A7	Cronobacter_phage	0.0e+00	92.4
WP_167497060.1\|1172244_1174305_+	hypothetical protein	A0A1B1W279	Salmonella_phage	3.9e-49	60.0
WP_047737986.1\|1174339_1175446_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	3.4e-15	26.9
WP_047737984.1\|1175435_1176683_-	hypothetical protein	NA	NA	NA	NA
WP_047737981.1\|1176669_1177131_-	hypothetical protein	NA	NA	NA	NA
WP_047737979.1\|1177136_1178051_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	1.5e-157	90.1
WP_047738158.1\|1178047_1178410_-	GtrA family protein	U5P0S6	Shigella_phage	7.6e-49	82.5
WP_047737976.1\|1178521_1178827_+	hypothetical protein	I6PCW5	Cronobacter_phage	6.0e-15	39.6
WP_047737973.1\|1178826_1180095_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.0e-229	91.5
1180391:1180441	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2176222 : 2217799

Shigella_phage(25.64%)

capsid,terminase,plate,portal,tail,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149121374.1\|2176222_2177503_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.0e-124	53.0
WP_149121373.1\|2177502_2177715_-	DUF1233 family excisionase	A0A0U2RY08	Escherichia_phage	2.4e-15	54.3
WP_149121372.1\|2177868_2178057_-	hypothetical protein	NA	NA	NA	NA
WP_149121371.1\|2178083_2179931_-	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.8e-28	32.6
WP_149121370.1\|2180198_2180363_-	DUF3927 family protein	NA	NA	NA	NA
WP_149121369.1\|2180362_2180785_-	tellurite/colicin resistance protein	S4TU42	Salmonella_phage	2.4e-54	78.6
WP_167497062.1\|2180873_2181065_-	DUF1482 family protein	NA	NA	NA	NA
WP_058657198.1\|2181015_2181210_-	hypothetical protein	NA	NA	NA	NA
WP_149121367.1\|2181196_2181514_-	hypothetical protein	NA	NA	NA	NA
WP_058657253.1\|2181704_2182205_+	hypothetical protein	NA	NA	NA	NA
WP_058657203.1\|2182435_2182846_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.1e-27	50.4
WP_058657205.1\|2182926_2183166_+	transcriptional regulator	NA	NA	NA	NA
WP_058657207.1\|2183165_2183579_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	6.6e-41	67.7
WP_058657254.1\|2183610_2183853_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_058657255.1\|2184029_2184209_+	HNH endonuclease	H6WG01	Cyanophage	4.9e-09	51.0
WP_149121366.1\|2184205_2185189_+	primosomal protein I	A0A1C9IHW0	Salmonella_phage	1.1e-46	69.9
WP_058657210.1\|2185211_2185868_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	5.8e-15	29.2
WP_058657211.1\|2186279_2187041_-	hypothetical protein	NA	NA	NA	NA
WP_058657213.1\|2187172_2187478_+	hypothetical protein	NA	NA	NA	NA
WP_115469782.1\|2187504_2188491_+	hypothetical protein	A0A0U1W0F5	Pseudomonas_phage	7.4e-06	25.2
WP_058657218.1\|2188752_2189331_+	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	3.5e-88	80.5
WP_072202088.1\|2189290_2190391_-	beta family protein	A0A0U2S621	Escherichia_phage	6.9e-162	73.6
WP_072202087.1\|2190834_2191035_+	hypothetical protein	NA	NA	NA	NA
WP_149121365.1\|2191196_2191508_+	DUF968 domain-containing protein	A0A2I7R4P0	Vibrio_phage	5.2e-22	57.0
WP_149121364.1\|2191504_2192101_+	hypothetical protein	H9C175	Pectobacterium_phage	3.6e-72	65.5
WP_149121363.1\|2192319_2192778_-	DUF3828 domain-containing protein	NA	NA	NA	NA
WP_149121362.1\|2192777_2193140_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_149121361.1\|2193303_2193651_+	hypothetical protein	NA	NA	NA	NA
WP_149121360.1\|2193643_2194000_+	serine/threonine protein kinase	G4KK23	Yersinia_phage	3.5e-38	60.3
WP_149121359.1\|2194106_2194652_+	hypothetical protein	NA	NA	NA	NA
WP_149121358.1\|2194648_2195788_+	DGQHR domain-containing protein	NA	NA	NA	NA
WP_149121357.1\|2196281_2196647_+	HNH endonuclease	Q8SBD7	Shigella_phage	1.0e-32	57.8
WP_058657231.1\|2196836_2197307_+\|terminase	phage terminase small subunit P27 family	Q8W632	Enterobacteria_phage	1.8e-79	91.7
WP_149121356.1\|2197303_2199034_+\|terminase	terminase large subunit	Q8W631	Enterobacteria_phage	0.0e+00	90.9
WP_165590720.1\|2199030_2199192_+	hypothetical protein	NA	NA	NA	NA
WP_149121355.1\|2199181_2200402_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	4.2e-168	71.0
WP_149121354.1\|2200394_2200982_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	3.3e-70	68.0
WP_149121353.1\|2200994_2202227_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	2.1e-143	63.6
WP_149121352.1\|2202296_2202617_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	2.6e-24	53.8
WP_149121351.1\|2202613_2203045_+\|head	phage head closure protein	Q8HAC9	Salmonella_phage	4.1e-17	39.2
WP_149121350.1\|2203028_2203571_+	hypothetical protein	Q8HAC8	Salmonella_phage	9.0e-46	54.8
WP_149121349.1\|2203573_2204149_+	hypothetical protein	Q8W624	Enterobacteria_phage	2.5e-54	57.4
WP_149121348.1\|2204163_2205669_+\|tail	phage tail protein	Q8W623	Enterobacteria_phage	1.6e-153	56.7
WP_149121347.1\|2205668_2206025_+\|tail	phage tail protein	Q8W622	Enterobacteria_phage	1.7e-45	72.9
WP_149121346.1\|2206021_2206315_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.4e-13	37.0
WP_149121344.1\|2206450_2208184_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	5.4e-92	46.1
WP_149121343.1\|2208244_2208520_+	hypothetical protein	Q8W619	Enterobacteria_phage	1.4e-26	60.2
WP_149121342.1\|2208540_2209527_+	DNA circularization protein	U5P4I0	Shigella_phage	1.3e-58	39.3
WP_149121341.1\|2209523_2210618_+\|plate	baseplate protein	U5P0H6	Shigella_phage	1.4e-101	53.6
WP_149121340.1\|2210617_2211361_+\|plate	phage baseplate assembly protein V	A0A192Y8K5	Salmonella_phage	1.1e-30	61.2
WP_149121339.1\|2211357_2211774_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	2.4e-38	55.9
WP_149121338.1\|2211766_2212834_+\|plate	baseplate J/gp47 family protein	Q8W615	Enterobacteria_phage	1.4e-114	55.6
WP_149121337.1\|2212815_2213403_+	DUF2313 domain-containing protein	O22003	Shigella_phage	2.6e-54	51.6
WP_149121336.1\|2213411_2214263_+	hypothetical protein	O22004	Shigella_phage	9.5e-18	61.1
WP_149121335.1\|2214265_2214691_+	hypothetical protein	NA	NA	NA	NA
WP_153677157.1\|2214680_2214845_-	hypothetical protein	NA	NA	NA	NA
WP_149121334.1\|2215035_2215998_+	hypothetical protein	A0A0U2SH60	Escherichia_phage	1.1e-06	28.1
WP_032104106.1\|2216372_2216648_+	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_017693450.1\|2216680_2217799_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	29.1

DBSCAN-SWA_3

2477837 : 2484333

uncultured_Caudovirales_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006810853.1\|2477837_2478272_+	hypothetical protein	B5BTV7	Ralstonia_phage	1.2e-05	58.1
WP_149121308.1\|2478574_2479804_+	hypothetical protein	A0A1W6DWU6	Sphingobium_phage	9.0e-09	24.7
WP_006810857.1\|2480166_2480583_+	hypothetical protein	NA	NA	NA	NA
WP_001273865.1\|2480719_2481277_+	recombinase family protein	Q2A092	Sodalis_phage	2.1e-26	42.5
WP_006810858.1\|2481444_2481870_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	6.8e-49	69.3
WP_047353327.1\|2481885_2483175_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.4e-168	70.3
WP_006810860.1\|2483221_2483542_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	7.0e-22	46.9
WP_149121307.1\|2483631_2484333_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.5e-90	68.8

DBSCAN-SWA_4

2878428 : 2885865

Enterobacteria_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047738840.1\|2878428_2878977_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.7e-47	54.9
WP_048210193.1\|2878979_2879858_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.4e-104	64.1
WP_047354497.1\|2879903_2880803_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	1.7e-28	33.8
WP_047354496.1\|2880799_2881888_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-97	52.8
WP_047354495.1\|2881891_2883016_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	2.4e-32	33.2
WP_047738844.1\|2883402_2884299_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.8e-43	42.2
WP_032654200.1\|2884473_2885865_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.2e-19	32.3

DBSCAN-SWA_5

3348067 : 3472855

142

Enterobacteria_phage(34.52%)

capsid,holin,terminase,portal,lysis,tRNA,tail,protease,integrase,head

attL 3381665:3381681|attR 3480483:3480499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149121396.1\|3348067_3348616_-	recombinase family protein	A0A1S6L009	Salmonella_phage	3.8e-76	79.4
WP_017692897.1\|3350138_3350369_-	hypothetical protein	NA	NA	NA	NA
WP_032637826.1\|3351464_3351734_-	hypothetical protein	G8C7W1	Escherichia_phage	1.5e-30	83.1
WP_149121243.1\|3351741_3352371_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	9.6e-100	86.1
WP_026094305.1\|3352370_3352652_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.8e-19	45.2
WP_015570936.1\|3352638_3353025_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	3.2e-45	78.1
WP_047736739.1\|3353203_3354175_-	hypothetical protein	A9YX09	Burkholderia_phage	1.3e-71	48.0
WP_006811580.1\|3354736_3355108_+	hypothetical protein	NA	NA	NA	NA
WP_149121242.1\|3355251_3356064_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	4.4e-105	70.4
WP_017692888.1\|3356060_3356198_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	1.3e-09	71.4
WP_045343112.1\|3356194_3356551_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	6.9e-63	94.1
WP_047736743.1\|3356547_3356829_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.3e-45	97.8
WP_017692885.1\|3356831_3357032_-	hypothetical protein	K7PJT9	Enterobacteria_phage	7.6e-19	59.1
WP_126340206.1\|3357037_3357637_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.0e-99	88.3
WP_045341234.1\|3358041_3358275_-	DinI family protein	A0A0M4REN2	Salmonella_phage	5.8e-26	77.9
WP_032659798.1\|3358431_3358848_-	hypothetical protein	NA	NA	NA	NA
WP_032659802.1\|3359296_3359677_+	hypothetical protein	NA	NA	NA	NA
WP_023304246.1\|3360254_3360674_-	hypothetical protein	A0A0F6N6A6	Escherichia_phage	8.0e-10	47.6
WP_032654595.1\|3360670_3360931_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.1e-28	73.5
WP_045349313.1\|3360934_3361621_-	DUF1627 domain-containing protein	NA	NA	NA	NA
WP_032654601.1\|3361632_3362325_-	phage replication protein P	G8C7U6	Escherichia_phage	1.3e-78	59.6
WP_032654604.1\|3362308_3363301_-	replication protein	A5VW95	Enterobacteria_phage	1.4e-49	75.0
WP_032659815.1\|3363474_3363729_-	hypothetical protein	NA	NA	NA	NA
WP_006811599.1\|3363737_3364280_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.1e-46	54.4
WP_022651660.1\|3364282_3364510_-	hypothetical protein	H6WRX5	Salmonella_phage	3.8e-14	41.3
WP_032645736.1\|3364625_3365036_+	helix-turn-helix domain-containing protein	A0A0H5BBV1	Pseudomonas_phage	1.5e-05	42.0
WP_022651662.1\|3365334_3365520_+	YebW family protein	NA	NA	NA	NA
WP_167497065.1\|3365529_3365688_+	hypothetical protein	K7P7H7	Enterobacteria_phage	5.3e-15	75.0
WP_022651664.1\|3365771_3366059_+	hypothetical protein	H6WRX2	Salmonella_phage	5.4e-34	67.4
WP_032659825.1\|3366181_3369247_+	exodeoxyribonuclease	K7PJT5	Enterobacteria_phage	0.0e+00	67.7
WP_063959361.1\|3369256_3370342_+	recombinase RecT	K7PKR8	Enterobacteria_phage	1.0e-104	53.0
WP_149121241.1\|3370376_3370988_+	hypothetical protein	A0A077SLQ8	Escherichia_phage	3.6e-43	50.5
WP_017692869.1\|3370974_3371217_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	7.8e-34	93.6
WP_149121240.1\|3371263_3371548_+	excisionase Xis	H6WRW8	Salmonella_phage	6.4e-35	76.1
WP_141421123.1\|3371626_3372094_-	hypothetical protein	NA	NA	NA	NA
WP_167497066.1\|3372078_3372216_-	hypothetical protein	NA	NA	NA	NA
WP_149121239.1\|3372322_3373552_-\|integrase	integrase arm-type DNA-binding domain-containing protein	H6WRW7	Salmonella_phage	4.0e-235	94.6
WP_063946202.1\|3373983_3374460_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_003860717.1\|3374456_3375410_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_015572138.1\|3375409_3376060_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_006176728.1\|3376091_3376667_-	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	8.2e-05	28.1
WP_017692868.1\|3377092_3378712_+	L-aspartate oxidase	NA	NA	NA	NA
WP_017383553.1\|3378696_3379434_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_017383554.1\|3379566_3380895_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.7e-48	33.5
WP_003860727.1\|3380947_3381331_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	2.1e-33	71.8
WP_003860729.1\|3381646_3382336_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	7.9e-55	48.8
3381665:3381681	attL	NA	NA	NA	NA
WP_017383555.1\|3382375_3383461_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_003860733.1\|3383665_3384085_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-13	37.2
WP_047718866.1\|3384155_3384854_+	DTW domain-containing protein	NA	NA	NA	NA
WP_063946201.1\|3384889_3387553_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_006811620.1\|3387662_3389018_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_003860739.1\|3389063_3389387_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_017383558.1\|3389383_3390691_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.5e-43	29.6
WP_032619240.1\|3390842_3391295_-	DUF4385 domain-containing protein	M4QHR1	Cyanophage	2.3e-34	50.0
WP_045337481.1\|3396950_3399524_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.7
WP_040118001.1\|3399653_3400385_-	polyphenol oxidase	NA	NA	NA	NA
WP_017383977.1\|3400381_3401362_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_003863164.1\|3401493_3402231_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_003863162.1\|3402498_3402840_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100229775.1\|3402945_3402993_+	hypothetical protein	NA	NA	NA	NA
WP_022649058.1\|3403100_3404261_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_047055254.1\|3404257_3405130_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_149121238.1\|3405190_3406312_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_006811632.1\|3406322_3407393_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.5e-89	51.5
WP_032669369.1\|3407605_3407980_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_032672087.1\|3408133_3408670_+	YfiR family protein	NA	NA	NA	NA
WP_017692859.1\|3408662_3409883_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_017382956.1\|3409895_3410381_+	OmpA family protein	NA	NA	NA	NA
WP_047738490.1\|3410383_3411754_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_023304265.1\|3411792_3412197_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|3412329_3412677_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_003863138.1\|3412720_3413488_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015571575.1\|3413519_3414059_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003863133.1\|3414074_3414323_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_003863132.1\|3414439_3415801_-	signal recognition particle protein	NA	NA	NA	NA
WP_014832951.1\|3415967_3416759_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_026094274.1\|3416778_3418065_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003863126.1\|3418116_3418710_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_017383004.1\|3418832_3419711_+	NAD(+) kinase	NA	NA	NA	NA
WP_015571579.1\|3419796_3421458_+	DNA repair protein RecN	NA	NA	NA	NA
WP_071524123.1\|3421432_3421615_+	hypothetical protein	NA	NA	NA	NA
WP_003863121.1\|3421596_3421935_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_017383006.1\|3422043_3422331_-	RnfH family protein	NA	NA	NA	NA
WP_006811645.1\|3422320_3422797_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003863115.1\|3422914_3423397_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	6.8e-29	46.8
WP_149121237.1\|3424121_3424361_+	DinI-like family protein	K7P797	Enterobacteria_phage	1.2e-34	94.9
WP_149121236.1\|3425652_3426618_-	hypothetical protein	G1CSU0	Cronobacter_virus	7.4e-59	40.0
WP_149121235.1\|3426619_3430459_-	DUF1983 domain-containing protein	Q9MCR7	Enterobacteria_phage	0.0e+00	60.4
WP_045357639.1\|3430512_3431097_-\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	1.9e-54	53.1
WP_023296258.1\|3431096_3431807_-	C40 family peptidase	F1C573	Cronobacter_phage	1.3e-97	70.2
WP_006809150.1\|3431809_3432568_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	1.0e-95	64.0
WP_149121234.1\|3432564_3432903_-\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	4.3e-38	60.7
WP_149121233.1\|3432905_3436160_-\|tail	phage tail tape measure protein	K7PM96	Enterobacterial_phage	0.0e+00	77.1
WP_126496713.1\|3436223_3436823_-	hypothetical protein	NA	NA	NA	NA
WP_112001095.1\|3436890_3437175_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.7e-43	97.8
WP_001549114.1\|3437183_3437567_-\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
WP_006809155.1\|3437575_3438019_-	hypothetical protein	K7PHL2	Enterobacterial_phage	4.6e-72	93.8
WP_022648886.1\|3438078_3438426_-	DUF3168 domain-containing protein	Q9MCS8	Enterobacteria_phage	3.8e-58	99.1
WP_047731783.1\|3438422_3438872_-	HK97 gp10 family phage protein	K7P6X4	Enterobacteria_phage	2.6e-75	99.3
WP_149121232.1\|3438868_3439207_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.1e-36	67.0
WP_149121231.1\|3439215_3439542_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.5e-48	81.5
WP_058679255.1\|3439585_3440797_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.5e-194	86.5
WP_020898875.1\|3440806_3441655_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	1.4e-138	92.1
WP_149121230.1\|3441668_3442973_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.6e-234	93.8
WP_149121229.1\|3442972_3444709_-\|terminase	terminase large subunit	K7PKT2	Enterobacteria_phage	0.0e+00	99.1
WP_045326830.1\|3444708_3445206_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	5.5e-74	84.8
WP_053004003.1\|3445321_3445885_-	HNH endonuclease	NA	NA	NA	NA
WP_149121228.1\|3445899_3446256_-	HNH endonuclease	K7PHK9	Enterobacteria_phage	7.0e-47	76.3
WP_149121395.1\|3446553_3447159_-	hypothetical protein	K7PGW6	Enterobacterial_phage	3.7e-101	85.7
WP_045626411.1\|3447322_3447544_+	hypothetical protein	Q38575	Escherichia_phage	6.3e-22	69.9
WP_149121227.1\|3447655_3449113_-	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	1.2e-273	91.1
WP_149121226.1\|3449185_3449767_+	hypothetical protein	NA	NA	NA	NA
WP_149121225.1\|3450179_3450698_-	hypothetical protein	K7PHH7	Enterobacteria_phage	2.4e-80	91.2
WP_149121224.1\|3450694_3451234_-	glycoside hydrolase family protein	K7PM52	Enterobacteria_phage	8.5e-81	79.8
WP_008499363.1\|3451235_3451484_-\|lysis	phage lysis protein	A0A127KNH9	Pseudomonas_phage	1.9e-06	35.1
WP_048209458.1\|3451852_3452674_+	hypothetical protein	NA	NA	NA	NA
WP_149121394.1\|3453204_3453549_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.0e-50	80.5
WP_149121223.1\|3453626_3454598_-	DNA primase	F1C597	Cronobacter_phage	6.1e-154	79.3
WP_149121222.1\|3454594_3456214_-	DEAD/DEAH box helicase family protein	F1C598	Cronobacter_phage	9.9e-282	87.6
WP_149121221.1\|3456640_3456937_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	4.9e-30	82.5
WP_109740585.1\|3456920_3457154_-	helix-turn-helix transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	8.1e-12	52.9
WP_162876076.1\|3457274_3457964_+	helix-turn-helix domain-containing protein	F1C5C2	Cronobacter_phage	4.3e-85	65.8
WP_149121220.1\|3458148_3458469_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	7.4e-24	57.8
WP_116363850.1\|3458458_3458653_+	hypothetical protein	NA	NA	NA	NA
WP_125366207.1\|3458827_3459052_+	hypothetical protein	NA	NA	NA	NA
WP_125366205.1\|3459052_3459418_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	2.7e-46	76.9
WP_149121219.1\|3459410_3459665_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	1.0e-36	89.3
WP_149121218.1\|3459854_3460268_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	4.7e-47	66.4
WP_149121217.1\|3460371_3460683_+	hypothetical protein	NA	NA	NA	NA
WP_149121216.1\|3460836_3462012_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	5.1e-211	94.8
WP_023317197.1\|3462500_3463409_+	DUF4760 domain-containing protein	A0A1B5FPC5	Escherichia_phage	2.4e-168	97.0
WP_149121215.1\|3463728_3464922_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.1e-108	49.4
WP_128771958.1\|3464965_3465712_-	hypothetical protein	S5W9H2	Leptospira_phage	9.6e-06	25.9
WP_149121214.1\|3465708_3466530_-	hypothetical protein	NA	NA	NA	NA
WP_149121213.1\|3467038_3467602_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.0e-60	65.2
WP_149121212.1\|3467630_3467849_-	hypothetical protein	Q7M294	Enterobacteria_phage	3.9e-16	67.7
WP_149121211.1\|3467851_3468595_-\|capsid	capsid protein	NA	NA	NA	NA
WP_047737302.1\|3469145_3469412_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.4e-30	71.6
WP_059353804.1\|3469408_3469966_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.4e-30	66.7
WP_017692848.1\|3469962_3470190_+	hypothetical protein	NA	NA	NA	NA
WP_149121209.1\|3470186_3470507_+	DUF5375 family protein	NA	NA	NA	NA
WP_149121208.1\|3470521_3472855_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.2
3480483:3480499	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP043438.2|WP_017692897.1|3350138_3350369_-|hypothetical-protein

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Acr_ID: NZ_CP043438.2|WP_032637826.1|3351464_3351734_-|hypothetical-protein

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Acr_ID: NZ_CP043438.2|WP_149121221.1|3456640_3456937_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP043438.2|WP_017692897.1|3350138_3350369_-|hypothetical-protein

3350138_3350369_-

76 aa aa

3348067-3472855

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043438_3	Unclear	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	3410509-3410478	0

1. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP043438 position: 3410509-3410478, mismatch: 0

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ataagcctcctgctggggctggcgttgccggt	Protospacer
********************************

NZ_CP043438.2|WP_032637826.1|3351464_3351734_-|hypothetical-protein

3351464_3351734_-

89 aa aa

3348067-3472855

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043438_3	Unclear	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	3410509-3410478	0

1. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP043438 position: 3410509-3410478, mismatch: 0

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ataagcctcctgctggggctggcgttgccggt	Protospacer
********************************

NZ_CP043438.2|WP_149121221.1|3456640_3456937_-|hypothetical-protein

3456640_3456937_-

98 aa aa

3348067-3472855

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043438_3	Unclear	3.2\|1571520\|32\|NZ_CP043438\|CRISPRCasFinder,CRT	1571520-1571551	32	3410509-3410478	0

1. spacer 3.2|1571520|32|NZ_CP043438|CRISPRCasFinder,CRT matches to NZ_CP043438 position: 3410509-3410478, mismatch: 0

ataagcctcctgctggggctggcgttgccggt	CRISPR spacer
ataagcctcctgctggggctggcgttgccggt	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043438

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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