CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022579	Oryzomicrobium terrae strain TPP412 chromosome, complete genome	1 crisprs	csa3,cas3,Cas9_archaeal,DEDDh,WYL,DinG,cas4	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022579_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022579_1

2674122-2674198

Orphan

Consensus_repeat	Method
CGGCCCGCAGGTCGCCGCCCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022579_1

>merge|NZ_CP022579|1|2674122-2674198|CRISPRCasFinder
CGGCCCGCAGGTCGCCGCCCACGGTCAGGTCGCCGCCGGTTTCCACGCCCCAGCCGGCGCGCAGGTCGCCGCCCACG

>NZ_CP022579|1|1|2674122-2674198|CRISPRCasFinder
CGGCCCGCAGGTCGCCGCCCACG	GTCAGGTCGCCGCCGGTTTCCACGCCCCAGC
CGGCGCGCAGGTCGCCGCCCACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022579.1\|WP_149425913.1\|2680821_2682204_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
NZ_CP022579.1\|WP_149425904.1\|2663144_2664566_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP022579.1\|WP_149426536.1\|2664562_2666440_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP022579.1\|WP_149425912.1\|2679372_2680020_+\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
NZ_CP022579.1\|WP_149425905.1\|2669676_2671734_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP022579.1\|WP_149426537.1\|2682951_2683305_+\|DUF486-family-DMT-transporter	unknown	unknown	gnl\|CDD\|377316
NZ_CP022579.1\|WP_054621264.1\|2680035_2680707_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_CP022579.1\|WP_149425902.1\|2661671_2662340_-\|DUF2889-domain-containing-protein	unknown	unknown	gnl\|CDD\|378563
NZ_CP022579.1\|WP_149425903.1\|2662329_2663088_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP022579.1\|WP_149425914.1\|2682268_2682931_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP022579.1\|WP_149425907.1\|2673010_2673652_-\|N-acetyltransferase	unknown	unknown	unknown
NZ_CP022579.1\|WP_149425911.1\|2677442_2677874_+\|hotdog-fold-thioesterase	unknown	unknown	gnl\|CDD\|224961
NZ_CP022579.1\|WP_054621254.1\|2668285_2669269_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP022579.1\|WP_149425909.1\|2675166_2676069_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP022579.1\|WP_149425906.1\|2671974_2672856_+\|DUF4238-domain-containing-protein	unknown	unknown	gnl\|CDD\|379425
NZ_CP022579.1\|WP_149426538.1\|2683337_2683982_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|238836
NZ_CP022579.1\|WP_054621262.1\|2678091_2679153_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP022579.1\|WP_054621252.1\|2666642_2667437_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP022579.1\|WP_054621253.1\|2667456_2668272_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP022579.1\|WP_149425910.1\|2676163_2677390_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913

Protein	Function_ID	Function_description	E-value
NZ_CP022579.1\|WP_149425913.1\|2680821_2682204_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	1.9749e-151
NZ_CP022579.1\|WP_149425904.1\|2663144_2664566_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP022579.1\|WP_149426536.1\|2664562_2666440_-\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
NZ_CP022579.1\|WP_149425912.1\|2679372_2680020_+\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	5.1974e-88
NZ_CP022579.1\|WP_149425905.1\|2669676_2671734_+\|HAMP-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.40086e-79
NZ_CP022579.1\|WP_149426537.1\|2682951_2683305_+\|DUF486-family-DMT-transporter	gnl\|CDD\|377316	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486). This family contains several proteins of uncharacterized function. The family is represented in the Transport classification database as 2.A.7.34, though the exact nature of what is transported is not known.	8.8338e-57
NZ_CP022579.1\|WP_054621264.1\|2680035_2680707_+\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.31037e-48
NZ_CP022579.1\|WP_149425902.1\|2661671_2662340_-\|DUF2889-domain-containing-protein	gnl\|CDD\|378563	pfam11136, DUF2889, Protein of unknown function (DUF2889). This bacterial family of proteins has no known function.	3.03227e-59
NZ_CP022579.1\|WP_149425903.1\|2662329_2663088_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	9.70811e-40
NZ_CP022579.1\|WP_149425914.1\|2682268_2682931_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	7.54332e-54
NZ_CP022579.1\|WP_054621262.1\|2678091_2679153_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP022579.1\|WP_149425911.1\|2677442_2677874_+\|hotdog-fold-thioesterase	gnl\|CDD\|224961	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism].	1.55788e-26
NZ_CP022579.1\|WP_054621254.1\|2668285_2669269_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.64443e-50
NZ_CP022579.1\|WP_149425909.1\|2675166_2676069_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.13988e-67
NZ_CP022579.1\|WP_149425906.1\|2671974_2672856_+\|DUF4238-domain-containing-protein	gnl\|CDD\|379425	pfam14022, DUF4238, Protein of unknown function (DUF4238). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 274 and 374 amino acids in length.	8.65785e-27
NZ_CP022579.1\|WP_149426538.1\|2683337_2683982_+\|deoxynucleoside-kinase	gnl\|CDD\|238836	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.	1.73822e-54
NZ_CP022579.1\|WP_054621252.1\|2666642_2667437_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03112e-125
NZ_CP022579.1\|WP_054621253.1\|2667456_2668272_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.13167e-76
NZ_CP022579.1\|WP_149425910.1\|2676163_2677390_+\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.82655e-68

>NZ_CP022579.1|WP_149425907.1|2673010_2673652_-|N-acetyltransferase
MTALLAPLPWPPWRGLGLELRIDVQHRPDALDNELDTLHRRLVTPGGALHGIATLDIDSPWPSLVFRYREADGEHYVYVEDTAHGCLAGYTVFNRLIEVGRRADPYLRAPHSKYAPAYQRRGLCTAVYEWALGSGICLLSGARQSPGAHALWHALARRHALGYVDVRDKTPRYLGRRVDRTVHDDLHTRMLLLGAGWSVDRLVEAAGMERVGE
>NZ_CP022579.1|WP_149425906.1|2671974_2672856_+|DUF4238-domain-containing-protein
MQRHHYVPQFYLREWYIPGKSAFWLYCRDNAGRLLFGKKSARSVGYQNGLYSRIPEFFENQNQSTNSIEENFFSPLDSKASKVIKKLIQSGPQSLSKEDRLVWSIFINSLLERSPSRIESIKNSANKLANEEFSKIKAVHEVQEGERHAFLDEMDIAAIANNTVLAEMVKWICNNETISHFANMTWMVARLPEGNDHFLTSDTPVVVNGASGGNPIYVLSIALSPNALFIMHKQEKDFNEDFIQTLAIIHNHLIAEQTKRYLVSSRELIDDGNIKYKKIANFLFSGKNHKANN
>NZ_CP022579.1|WP_149425905.1|2669676_2671734_+|HAMP-domain-containing-protein
MTTPSLQQATTGTNGRRPPMSGRRTSVATKLSIILAASITALLLAAAFGLSQYLTAKLEQKSLDALKTNNRMIIDMIDAYNSGLSQTVERLGKVFASNYPDKFSMDADGVLHHGRSPIVARETAIPDRFTAVAGTPATVLTRRGDDFLRTSTSITNEKGERASDVPLGPTHPAVPALLKGQTYTGKAKMLGRDFMTHYIPIKDDAGQVIGAFFVGLDFTDGLAALKKRVLALKIGDTGYPYALDVGTDKGRLVIHPAKEGTNLLDAKDSDGKEFVKEMISQGNGIITYWWQNPGEEKPREKVVVFNHYAPWNWTLASGSYLNEFNDEGKRSGQGLMLVALLFVPVVFAIVWVAARRWVSRPLGAAVQAANKVAEGDFTTQVEVRSRDEIGELMAALATMIKRLGGTITEVHKAASAVASDAGQLHSSAGRVAHSSEQQSDAASGMAAAVEEMTASIEMIVQHAAEAHTISGHSAEVSQESSATIQQAVAAMNHIAETVRSASGAVEQLGRESEEISAIVQVIKEIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTSQSTHEIGAMIERIQHGTRHAVTSMNQGVDQVASGVELAAAADAAINRIREGAAQVTAAVATITAAIQEQSTASANVAQGLEKIAGMTERNTTDAQQSAAAAEELNVVAAQLRSTVDQFRV
>NZ_CP022579.1|WP_054621254.1|2668285_2669269_-|ABC-transporter-substrate-binding-protein
MRKHAIATALAVALPAAGLSVSVAHADDVVRLGNLKFAHYGAVSYMKEVCGKYGVKVEERMFPKGPDIMPAIVAGEIDIAALASDGAISGRANGVPIVTVAGFAKGGARIVAGVDSGIKNLNDLKGKKVGVTRGGAQELLLLAELEKVGLTWSDKPGKDVQIVYLAFADLNQALAAKQIDAMCQSEPQSSQALNKKFGVEVIKPYNTAMGEPYRLLVMSEKMYTEKKDVAQRVMKCFVESTALFNKDPALAEKYVREQMFKGQISSQDFKDAMDNADYTYDVSLEHIDTTTAFMQKFGVGRMSKPPKAADWVKLDLLQKAKADLKVK
>NZ_CP022579.1|WP_054621253.1|2667456_2668272_-|ABC-transporter-permease
MKRLNAILHGLAVPVVLLVLWEICSRAGLVSEVVLPAPSAVALKWWQSLLPAQDFDPAAGSYLAWLFSGELLHDAWASMYRVVVGFVIGAGLALPVGLLMGANARIYDLFNPLVQVLRPIPPIAYIPLAILWFGLGNPPSFFLISLGAFFPVLMNTIAGVRHVDGIYLRAARNLGVKPLTMFARVILPAATPYILAGVRIGIGTAFIVVIVSEMIAVNDGLGFRILEAREFMWSDKIIAGMITIGLLGLAIDVAMNKLNNHLLRWHRGLEH
>NZ_CP022579.1|WP_054621252.1|2666642_2667437_-|ABC-transporter-ATP-binding-protein
MSSQIIVSGVNKVFRTPEKDVIALKDINLTINPGEFVCLLGPSGCGKSTLLNAVAGFSLPSSGSITAAGATVTGPGPERGMVFQEYALFPWMTVAQNIAFGLEVKGLGKAEIAAKVESLLDTLSLKDFRNRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWKEFGKTILFVTHSIEESIYLADRIVVMTYRPGTIKRDQWVDIPRPRDPAAPAFNELKRELGRLVMEEQQRHAADELKLAAVD
>NZ_CP022579.1|WP_149426536.1|2664562_2666440_-|sensor-histidine-kinase
MAGLLAALACLAVGLGSYRLLSGWQVAQLAHTNAQRLGAYGVSLENALARHETLPFVLAQDHRLHDLLDHPNDPGRVDTVNRYLELVQGRAGVTAAYLTDAAGLTLAASNWATSQSFIGQHYTFRPYFTEAMEGRPGRFYGVGATTGDPGYFISAPVQQNGTIRGVVVVKVSLAAFETAWRESGDALNLADAHGVLFLASLPDWRYRSLAPLPPAVEAELHETRQYGPYPLLPVKASAALSFADPVRPITLWDNGGGRHEALMQTLPVGPLGWRLVLFSDLASAYGLAAAQATALGFATAFLLALGFFARQRHSRLQERRAARAELARVNAELEAKVAERTALLTATNARLEEQLEAQADAERILRATQDRALQAGRLAALGQMAAGITHELNQPLAALNTLSDNAVAFLQRGKPEGAVDNLRLISQLAGRMGRIVGELKAFARRGQSELAPVSVREALDHALFIVELRRRELDATIALALPEPSPQVLADPVRLEQVLVNLLRNGLDAVAEVDAGDPQRPGGRRLLVSVSRVPAYHDPEDEGGEPRGSTGVSLVRIVIADQGPGIPPEVLPQLFEPFFTTKPVGDGLGLGLSISLTIAESFGGTLAARNRPEGGAEFILELPAA
>NZ_CP022579.1|WP_149425904.1|2663144_2664566_-|response-regulator
MSALSVHADPAAPLSVFLVEDDPVVRHGSEQALALADLPVQSFADAESALNALVVAPSARSVGVVISDVRLPGRDGLSLMTELRQRDPDLPVILVTGHGDVAMAVEAMREGAYDFIEKPFSSDRLVDSARRALDKRALILENRRLKERLADQDNHPLAGLIGQSPAMQQVRRLLEAVAPTDVDVLINGETGAGKEVVARALHAASGRKGPFVALNCGALPESVFESEIFGHEAGAFTGAGKRRIGKIEFAQGGTLFLDEIESMPLALQVKLLRVLQERVVERLGGNTLFPVDCRVVAASKADLKAESDAGRFRADLYYRLNVVTLDLAPLRERREDIPLLMAHFCRQAAQRYGRPVPAPSPEQLARWQAYDWPGNVRELKNIADRVVLGLETPLPAAAAPHAMTAAAAPALPPAAPGESLAARLDAVEKACIEAALKECGGQVARAAERLQLPKKTLYDKLHRHGIDPERFRS
>NZ_CP022579.1|WP_149425903.1|2662329_2663088_-|nitroreductase
MGDPRAPAAVLAGIDLSAVPAPAQSVLTTILERRSVRGFLPTPVPRETVEAILAVASRAPSGSNIQPWKVHVCAGPVRDAICREVLAAHDAEAADPAAGEPHRDEYRYYPEKWRDPYLTRRRDLGWALYGAVGIARGENDKMHRQRGRNFSFFGAPVGLVFTLDRDLSVGSWIDLGMFMQNVMLAARAYGLETCPQQAFARYHRILRQHLAIPDDQIVVCAMALGLPDPDEPANRLVSEREPVAAFGSFHGF
>NZ_CP022579.1|WP_149425902.1|2661671_2662340_-|DUF2889-domain-containing-protein
MDSKVRFTPELAAQVAESDTSSTAAAPVAAAPASLARPPRDVPRRLTHTREVVCRGYEREDGLWEIEGSLLDTKTYPFHTVHRGHIPAGEGIHRMTLRLTVDDELVIRDAQALTEQSPYRVCREVNAAYDGLIGLRIGPGFTRRVKEMFAGVKGCTHLTELLGPVATTAFQTIWPLLAERREAAGQGLSGEEKPPLVDGCHALSRDGEVVAMRWSAEVRARW
>NZ_CP022579.1|WP_149425909.1|2675166_2676069_-|LysR-family-transcriptional-regulator
MKPLPPLKALVAFDAAMRSNSFSVAAEELSVTPGAVGQQIQKLEAWLGTPLFTRQVRQVQPTAEALAYWARIQPALAQIADASHKLRDSRSAGVWLSMLPSFAAKWFPARMARLLTSHPHLQLHLNATTALVDFEREPIDLAIRYFDGNAPHLDTTLLYDDEARVYCSPAYAAALGLTAPGDVARATLLVTTMHPHWERWLAEFATLTAARVAAIPRIHFDLGLTAIEAAKQGQGLVMTSPLLVVEEVAAGTLVEPFGGPSASPCRLPLASGYYLVHHRTQALRPAAAEVKAWFIAEVRR
>NZ_CP022579.1|WP_149425910.1|2676163_2677390_+|MFS-transporter
MFQSLRRPRVLAVTLAAAGILMVTMGIRQSFGLIVSPLNTSTGLGIATISFALALGQFAWGAIQPIAGAVADRYGPRGVLIGGIVVLALGCALTPFAQSGFALAMTLGLLASMGSGAGSFSVLIGAAAQRLPLESRGAASGVINAGGSFGQFVFAPILQKLIQSFGWMGALWAMAVAALAALPLVGKLTGPTHAADAAHGHASQDKGLGAAVHEALADRSYLLLHAGFFTCGFHIAFLVTHLPGEIDLCGLPPSVASWSLAIIGLANIAGSLYAGGCIARYRSKHVLAAMYASRAVLIGAYLLMPRTDWAYYLFAAGLGVTWLATVPPTAAIVGKLFGTRYLATLFGLTLLSHQIGGFLGAWLGGLAVTRFGDFTWMWYADMVLAALAALANLPIKEAPMLRPAAQPA
>NZ_CP022579.1|WP_149425911.1|2677442_2677874_+|hotdog-fold-thioesterase
MSRLRPEISVAELNARGGEYLPGFLGVEMVELAEKRLTSRMPVKKLHFAPNDFLHAASIVALADTTCGYATIAHLPEGAESFTTIELKSNHLGTVRDGAVACVATAQHLGRTTQVWDAVVSDEATGRTIALFRCTQMILWPKG
>NZ_CP022579.1|WP_054621262.1|2678091_2679153_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTQQTSSSSSPLSYRDAGVDIDAGDALVDRIKPLAKKTLREGVMAGIGGFGALFEVPKKYKEPVLVSGTDGVGTKLKLAFDLKRHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVDTAARVVGGIAAGCEQAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVEKSKIINGSTIVPGDVVLGLASSGAHSNGYSLVRKILARANPDVDATFDGDKTLADAIMAPTRIYVKSVLALLAAMPEAVKGLAHITGGGLTENVPRVLPENVVADLDKSAWPRPKLFQWLQAEGNVAEDEMHRVFNCGIGMVIVVPADKAAAAQAALAAAGEAVWQIGTIRARNGDEHQTQVR
>NZ_CP022579.1|WP_149425912.1|2679372_2680020_+|DnaA-regulatory-inactivator-Hda
MRQLLLDLMPAARPTFDNFVVGGNAELIAGFNGWLSERSQEPLFYMWGETGSGRTHLLRASGAEYLDAATDPALAAWPDDVPFVAVDNVDALDAAGEQALFNGFNRLKAEGGKLLVAAHQPPAAVGLREDLRTRLGSGLIYRAQVLSDAEKGAAIAAQAAARGLALPEGAVDYLLRHAPRDMGSLAAIVVALDRFSLERKRPITLPLLREVLHST
>NZ_CP022579.1|WP_054621264.1|2680035_2680707_+|HAD-family-hydrolase
MELALFDLDNTLLSGDSDYEWAQFLIGKGAVDAEIQEAKNKAFYEHYKAGTLDIDEFLAFQLAPLARHDRAELDAWHAEYVANRIRPLIGAPARELVARHLDAGHLCAIVTATNSFVTGPIAREFGIPHLIGTIPAVDVPSGRFTGAPTGIPSFQAGKITRVEAWLESQGLWWGSFAKTWFYSDSHNDLPLLEKVSHPVAVDPDPTLRSRAERDGWPVLSLRG
>NZ_CP022579.1|WP_149425913.1|2680821_2682204_+|polynucleotide-adenylyltransferase-PcnB
MIRKLITRAITRIRGPKGAGKGLVTEAARIGRSSHGVTRDQLSYGGRRVCEVLQENGFEAFVVGGAVRDLLLARDPKDYDVATNATPEQVKRCFRRARIIGRRFQIVHVVMRDEIIEVTTFRGLHDSETDEHGRVLHDNVFGSQAEDAARRDFTVNALYYNPADETILDYHHGVADLKQKTLRIIGDPAVRYREDPVRMLRAVRLAAKLGLSIDPAARRPIREMAELIENIPAARLFDEMLKLLTSGYSLKCLQQLREEGLHHGLLPLLDVILEQPRGEKFVRLALEATDRRVKEDKPISPGFLFATLLWHEVLAQWDKNLNKGERRIPALMAAMDQVLEKQCQKLAITRRIAGDIKEIWMLQPRFEARAGKRPFLLLDQPRYKAAYDFLLLRAASGEVEQALADWWSAFMVADYDEQQDMLVPDKKGEGDGARKKRRRRSNNRKGSGADGAGPSGQPPQ
>NZ_CP022579.1|WP_149425914.1|2682268_2682931_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MAELPSSPSFPGLPHRAYVALGANLGDPVAQVHAALAALDQLPDCRLAAASSLYRTAAITANPGEVQPDYINAVAELATSLSPQALLAALLALESAGGRTRHHSHPRWAPRTLDLDLLLYDDLAGLWPAKPAGAAGAAVAATQTTGDNATALAASGTDLAADLAAGALPTLLLPHPRLHLRAFVLTPLAEIAPQLALPGRGSVAAWLPAVRLQDIEKLPE
>NZ_CP022579.1|WP_149426537.1|2682951_2683305_+|DUF486-family-DMT-transporter
MVSDAPVILRTVVLLSASNVFMTFAWYAHLKNLADRPWWLAAMLSWGIALFEYLLQVPANRIGASQLSLAQLKILQEAITLTVFVPFVVFYMNQPLKLDYLWAALCLCGAVYFIFRS
>NZ_CP022579.1|WP_149426538.1|2683337_2683982_+|deoxynucleoside-kinase
MLAQARHIVVEGPIGAGKTTLARRLAAHLQARPLIEDPDANPFLGRFYQDRHRYALPTQLHFLLKRHEQLAALQEHLLPAEATPVVCDFLAEKDALFARLNLDDDELALYQRIRQQAPLPELAPDLVIFLQAAPENLIARVRRRASANERTVDDTYLVRLADAYSHFAYHYDACPVMIVNSDNLNFADRDDDFHLLLERLATQRSHREFFNLGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP020529	Enterobacter cloacae strain 174 plasmid unnamed1, complete sequence	72320-72350	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP038299	Escherichia coli O157:H7 strain TB182A plasmid pTB182A-5, complete sequence	32379-32409	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP037947	Escherichia coli strain CFSAN027346 plasmid pCFSAN027346-2, complete sequence	9683-9713	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP020057	Escherichia coli strain AR_0069 plasmid unitig_3, complete sequence	18452-18482	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	64529-64559	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP023351	Escherichia coli strain ETEC-2264 plasmid unnamed2, complete sequence	67489-67519	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP042866	Escherichia coli strain ATCC BAA-196 plasmid unnamed1, complete sequence	152885-152915	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP029104	Escherichia coli strain AR437 plasmid unnamed2, complete sequence	20814-20844	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_AP014804	Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence	65484-65514	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP044149	Escherichia coli O157 strain AR-0427 plasmid pAR-0427-1	5414-5444	6	0.806
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	17890-17920	7	0.774
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	92584-92614	7	0.774
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_CP007510	Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid	78434-78464	7	0.774
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NC_008275	Pseudomonas putida MT53 plasmid pWW53, complete sequence	55871-55901	7	0.774
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	48847-48877	7	0.774
NZ_CP022579_1	1.1\|2674145\|31\|NZ_CP022579\|CRISPRCasFinder	2674145-2674175	31	NC_010850	Rhodococcus sp. NS1 plasmid pNSL1, complete sequence	66710-66740	8	0.742

1. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP020529 (Enterobacter cloacae strain 174 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

2. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP038299 (Escherichia coli O157:H7 strain TB182A plasmid pTB182A-5, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

3. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP037947 (Escherichia coli strain CFSAN027346 plasmid pCFSAN027346-2, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

4. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP020057 (Escherichia coli strain AR_0069 plasmid unitig_3, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

5. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

6. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP023351 (Escherichia coli strain ETEC-2264 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

7. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP042866 (Escherichia coli strain ATCC BAA-196 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

8. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP029104 (Escherichia coli strain AR437 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

9. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_AP014804 (Escherichia coli O119:H6 strain EC404/03 plasmid pEC404/03-1, complete sequence) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

10. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP044149 (Escherichia coli O157 strain AR-0427 plasmid pAR-0427-1) position: , mismatch: 6, identity: 0.806

gtcaggt--cgccgccggtttccacgccccagc	CRISPR spacer
--cggcttgcgccgccgattaccacgccccagc	Protospacer
  *.* *  ********.** ************

11. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 7, identity: 0.774

gtcaggtcgccgccggtttccacgccc-cagc	CRISPR spacer
ccgccgtcgccgccggtttcctcgcccgcag-	Protospacer
 .   **************** ***** ***

12. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

gtcaggtcgccgccggtttccacgccccagc	CRISPR spacer
tagaggtcgatgccggtttccacgcccatgc	Protospacer
   ****** .****************  **

13. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 7, identity: 0.774

gtcaggtcgccgccggtttccacgccccagc	CRISPR spacer
tagaggtcgatgccggtttccacgcccatgc	Protospacer
   ****** .****************  **

14. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NC_008275 (Pseudomonas putida MT53 plasmid pWW53, complete sequence) position: , mismatch: 7, identity: 0.774

gtcaggtcgccgccggtttccacgccccagc	CRISPR spacer
tagaggtcgatgccggtttccacgcccatgc	Protospacer
   ****** .****************  **

15. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 7, identity: 0.774

gtcaggtcgccgccggtttccacgccccagc	CRISPR spacer
tagaggtcgatgccggtttccacgcccatgc	Protospacer
   ****** .****************  **

16. spacer 1.1|2674145|31|NZ_CP022579|CRISPRCasFinder matches to NC_010850 (Rhodococcus sp. NS1 plasmid pNSL1, complete sequence) position: , mismatch: 8, identity: 0.742

gtcaggtcgccgccggtttccacgccccagc	CRISPR spacer
gtacggtggccgccggtttcgacgcccgcca	Protospacer
**  *** ************ ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1420736 : 1431012

Pseudomonas_phage(71.43%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149426459.1\|1420736_1423034_+	hypothetical protein	A0A0U1T4N7	Pseudomonas_phage	0.0e+00	74.3
WP_149425216.1\|1423457_1423940_-	hypothetical protein	NA	NA	NA	NA
WP_149425217.1\|1423936_1424236_-	hypothetical protein	NA	NA	NA	NA
WP_149425218.1\|1424848_1425919_+	hypothetical protein	Q5QF43	Pseudomonas_virus	2.2e-67	49.6
WP_149425219.1\|1425935_1427228_+	DUF4043 family protein	A0A2K8IBP1	Pseudomonas_phage	2.5e-147	58.7
WP_149425220.1\|1427308_1427785_+	hypothetical protein	A0A0U1W0G3	Pseudomonas_phage	3.7e-27	52.4
WP_149425221.1\|1427858_1428680_+	hypothetical protein	A0A0U1UNM5	Pseudomonas_phage	1.9e-63	48.6
WP_149425222.1\|1428676_1429345_+	hypothetical protein	Q5QF47	Pseudomonas_virus	2.2e-62	53.6
WP_149425223.1\|1429341_1431012_+	hypothetical protein	X5IGB8	Pseudomonas_phage	2.4e-12	32.9

DBSCAN-SWA_2

1447084 : 1462352

Pseudomonas_phage(11.11%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149426460.1\|1447084_1452166_+	PLxRFG domain-containing protein	A0A0U1T6E4	Pseudomonas_phage	0.0e+00	63.6
WP_149425234.1\|1452219_1452579_+	hypothetical protein	NA	NA	NA	NA
WP_149425235.1\|1452571_1453048_+	hypothetical protein	C4NTB4	Sulfitobacter_phage	5.2e-05	44.9
WP_149426461.1\|1453162_1453666_+	hypothetical protein	A0A218M342	Acidovorax_phage	5.6e-50	72.1
WP_149425236.1\|1453680_1454139_+	hypothetical protein	NA	NA	NA	NA
WP_149425237.1\|1454251_1456396_+	hypothetical protein	M1T360	Cyanophage	5.1e-92	35.3
WP_149425238.1\|1456405_1456789_+	hypothetical protein	NA	NA	NA	NA
WP_149425239.1\|1456792_1457434_+	hypothetical protein	A0A2D1GN08	Marinobacter_phage	2.8e-14	44.0
WP_149425240.1\|1457505_1458471_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_149425241.1\|1458567_1458825_+\|holin	holin	Q8W6S7	Burkholderia_virus	1.6e-08	47.0
WP_149425242.1\|1458850_1459354_+	glycoside hydrolase family protein	NA	NA	NA	NA
WP_149425243.1\|1459350_1459848_+	hypothetical protein	NA	NA	NA	NA
WP_149425244.1\|1459837_1460506_-	SOS response-associated peptidase	V9IQW7	Stenotrophomonas_phage	9.4e-37	40.9
WP_149425245.1\|1460567_1461056_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.4e-21	47.5
WP_149425246.1\|1461059_1462352_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.7e-95	47.8

DBSCAN-SWA_3

1502622 : 1514456

Leptospira_phage(14.29%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149425267.1\|1502622_1503858_-	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	2.1e-13	29.8
WP_054620597.1\|1503957_1504572_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_149425268.1\|1504935_1505142_+	hypothetical protein	NA	NA	NA	NA
WP_149425269.1\|1505254_1505698_-	ribonuclease HI	A0A1Q2U2R0	Vibrio_phage	2.1e-32	48.9
WP_149425270.1\|1505730_1506312_-	Bro-N domain-containing protein	A0A0P0IDX3	Acinetobacter_phage	2.2e-29	54.1
WP_149425271.1\|1507211_1507799_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	5.7e-22	38.0
WP_149425272.1\|1508153_1508567_+	DNA mismatch endonuclease Vsr	I6NSG0	Burkholderia_phage	2.3e-33	48.4
WP_149425273.1\|1508544_1509831_+	DNA (cytosine-5-)-methyltransferase	A0A191SB20	Nostoc_phage	7.1e-57	37.1
WP_149425274.1\|1509793_1510624_+	endonuclease	NA	NA	NA	NA
WP_149425275.1\|1510628_1511936_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149425276.1\|1512239_1514456_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	1.0e-10	33.8

DBSCAN-SWA_4

3150524 : 3158318

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054620273.1\|3150524_3151355_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A291L9W7	Bordetella_phage	4.6e-09	50.0
WP_149426162.1\|3151409_3151955_-	dTDP-4-dehydrorhamnose 3,5-epimerase	K7QL66	Escherichia_phage	3.7e-47	50.0
WP_149426163.1\|3151951_3152848_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.6e-95	59.9
WP_149426164.1\|3152856_3153774_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_149426165.1\|3153773_3154862_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.3e-85	47.6
WP_149426166.1\|3154894_3155917_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.7e-74	43.3
WP_149426167.1\|3155990_3157280_-	nucleotide sugar dehydrogenase	NA	NA	NA	NA
WP_149426168.1\|3157295_3158318_-	NAD-dependent epimerase/dehydratase family protein	A0A0K0KW07	Prochlorococcus_phage	1.7e-08	27.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage