CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042910	Gimesia maris strain DSM 8797 chromosome, complete genome	2 crisprs	csa3,RT,cas3,DinG,WYL	1	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042910_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042910_1

4538415-4538494

Orphan

Consensus_repeat	Method
GCAAGCCAACGGTGCCACCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042910_1

>merge|NZ_CP042910|1|4538415-4538494|CRISPRCasFinder
GCAAGCCAACGGTGCCACCCGCCCGAACGGTTGTGTATCATGTGTCCGGTCTTAATAGCAAGCCAACGGTGCCACCCGCC

>NZ_CP042910|1|1|4538415-4538494|CRISPRCasFinder
GCAAGCCAACGGTGCCACCCGCC	CGAACGGTTGTGTATCATGTGTCCGGTCTTAATA
GCAAGCCAACGGTGCCACCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042910.1\|WP_002645283.1\|4549419_4549857_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_CP042910.1\|WP_149303777.1\|4521753_4524675_-\|DUF1549-domain-containing-protein	unknown	unknown	gnl\|CDD\|377872
NZ_CP042910.1\|WP_002647439.1\|4539522_4540860_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP042910.1\|WP_149302988.1\|4541439_4543362_+\|DUF1592-domain-containing-protein	unknown	unknown	gnl\|CDD\|377886
NZ_CP042910.1\|WP_149302986.1\|4536083_4536404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042910.1\|WP_002645281.1\|4551831_4553130_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270306
NZ_CP042910.1\|WP_002647448.1\|4529643_4531008_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|369346
NZ_CP042910.1\|WP_002647440.1\|4538850_4539489_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042910.1\|WP_002645284.1\|4547696_4549169_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|365919
NZ_CP042910.1\|WP_002647452.1\|4524989_4526624_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NZ_CP042910.1\|WP_002647449.1\|4528211_4529177_-\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042910.1\|WP_002645285.1\|4546453_4547212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042910.1\|WP_081459426.1\|4549905_4551768_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP042910.1\|WP_081459541.1\|4526616_4527228_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274379
NZ_CP042910.1\|WP_002645286.1\|4544903_4546328_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP042910.1\|WP_002645287.1\|4543455_4544844_+\|DUF1552-domain-containing-protein	unknown	unknown	gnl\|CDD\|377875
NZ_CP042910.1\|WP_081459540.1\|4533609_4535811_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP042910.1\|WP_002647442.1\|4536674_4538111_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293763
NZ_CP042910.1\|WP_149303779.1\|4531491_4533093_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NZ_CP042910.1\|WP_002647450.1\|4527527_4527956_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297

Protein	Function_ID	Function_description	E-value
NZ_CP042910.1\|WP_149303777.1\|4521753_4524675_-\|DUF1549-domain-containing-protein	gnl\|CDD\|377872	pfam07583, PSCyt2, Protein of unknown function (DUF1549). A family of paralogues in the planctomyces.	9.99394e-119
NZ_CP042910.1\|WP_002647439.1\|4539522_4540860_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.17845e-28
NZ_CP042910.1\|WP_149302988.1\|4541439_4543362_+\|DUF1592-domain-containing-protein	gnl\|CDD\|377886	pfam07631, PSD4, Protein of unknown function (DUF1592). A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also match pfam07627, pfam07626, and pfam07624.	3.56558e-56
NZ_CP042910.1\|WP_002645281.1\|4551831_4553130_-\|extracellular-solute-binding-protein	gnl\|CDD\|270306	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that functions as the primary high-affinity receptor of an uncharactertized ABC-type polyamine transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.565e-24
NZ_CP042910.1\|WP_002647448.1\|4529643_4531008_-\|DUF1501-domain-containing-protein	gnl\|CDD\|369346	pfam07394, DUF1501, Protein of unknown function (DUF1501). This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.	1.94815e-85
NZ_CP042910.1\|WP_002645284.1\|4547696_4549169_+\|aldehyde-dehydrogenase	gnl\|CDD\|365919	pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity.	0
NZ_CP042910.1\|WP_002647452.1\|4524989_4526624_-\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	1.2951e-07
NZ_CP042910.1\|WP_002647449.1\|4528211_4529177_-\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	2.97481e-55
NZ_CP042910.1\|WP_002645283.1\|4549419_4549857_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.51272e-40
NZ_CP042910.1\|WP_081459426.1\|4549905_4551768_-\|HAMP-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.30948e-40
NZ_CP042910.1\|WP_081459541.1\|4526616_4527228_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274379	TIGR02989, Sig-70_gvs1, RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).	5.00214e-38
NZ_CP042910.1\|WP_002645286.1\|4544903_4546328_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	9.52519e-06
NZ_CP042910.1\|WP_002645287.1\|4543455_4544844_+\|DUF1552-domain-containing-protein	gnl\|CDD\|377875	pfam07586, HXXSHH, Protein of unknown function (DUF1552). A family of proteins identified in Rhodopirellula baltica.	1.6446e-95
NZ_CP042910.1\|WP_081459540.1\|4533609_4535811_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.14528e-21
NZ_CP042910.1\|WP_002647442.1\|4536674_4538111_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	5.21082e-111
NZ_CP042910.1\|WP_149303779.1\|4531491_4533093_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.25771e-58
NZ_CP042910.1\|WP_002647450.1\|4527527_4527956_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.0051158

>NZ_CP042910.1|WP_002647442.1|4536674_4538111_+|sulfatase-like-hydrolase/transferase
MRNRRVFIAVTGVVFALVSTGASFAAKAERSGKPNIILVMADDQGWGDTSYNGHPFVKTPELDAMAKDAFVFDRFYAGAPVCSPTRASVMTGRNPNRTKVTNHGRYMRPHEQTIAETLKAAGYVTGIFGKVHLGSGQPDSPCNPSGMGFDEWVIGLNFFDNDPYLSRMGKIEHRKGKGSVILMDDTLEFLEKHKDGEQPIFTVVWFPSPHDPHAEVPEGPSLYKGKPHAGYYREITLLDQQVGRLRRALRNMNIAENTIVWYCSDNGGLVKETSGGREKKGSIYEGGLRVPGIIEWPARKLKGRTSVPVATFDIYPTLLSLAGVELYAPHPLDGMDVSGIITGSVTKRSKPMGFWHQLQRGQGTRSDQIQKAIMEKQQAGAPLPHDSVRMRKDVDEFPQFPEETTTGHAAWNDWPWKLHRIKGTKFELYNLSDDPMEKTDLSKNPEQAQRVKQMQQELDAWMRSVIRSINGKDYQESK
>NZ_CP042910.1|WP_149302986.1|4536083_4536404_+|hypothetical-protein
MPDKTILTIILSIFSTINGIVPGGFIGFYGLLYFMFYTQIEGFWPFFIFTVPIGMILLGAVGFALGFSLAKSLSESTLLKLIYANLVIIVSVALFIYSLFHNAITM
>NZ_CP042910.1|WP_081459540.1|4533609_4535811_+|tetratricopeptide-repeat-protein
MNEINPQIPAEHDPIKRSTKTNLLGVTLLYLFVILLVFSRCLPYPLLDWDDNLHLTDNPSLNPVSFKGMWNIWSQPYEGLYIPLSYSFFAIEVYLTQLFGFQDHAVLAPYIFHAGSLLLHLINSLLIYRILNIIVNDTRAACLGGLLFVLHPLQVESVVWISETRGLLSNLFSIATIYFTLKYVKKSETSTPAQTGKTNFDLIIATMCFVLSMLAKPSSVTTPLIIGILISVFFAEHLKKLGRWILCWLMLALAFIFITRGEQSDLLFDSPLWARPLIFGDALAFYFQKLFIPTPLLMQYDKSIKLILNTSWIYWSWLIPCLIFLLACIPRQRRVLQASLAIFITGLLPVLGLIPFSYQFISTVADRYVYLAMLGPALALAWLLRSHHKTVSLSLTYAALFLFAGLSFMQTATWSNSRTLYQHCLAHNPHAFIASNNLGHLAFNNQKYDEALHHFKNAISVIPDDVGTNENLGTIYMELGRKDQALQYFNKVLKIDPKHAGAHFALGVYYEAREDNKKAFNHYFQSLQAKPQNADALFGLGNLARKQKNYEEALRYYQLALKFNPDAPGIRETLGNLYLELGDMTNAQHQFDLSRKQGLLDPANEFNLGLMAAKNADLQKAIKHYESALQILDSTKKPDLHRQVIQELTFTYNMRGTTLQKKQDHEQAEYYFRLAMKTSPDFAPAYFNLGESLYRLGKTQAAISVLQTALTLVPPNSEPAIDIQKRIDLYQKK
>NZ_CP042910.1|WP_149303779.1|4531491_4533093_+|exo-alpha-sialidase
MLLLSVHAPLHADSKDTPVATGELLKDFVHPPVNFSPGAESNSEARKYQGIPTIERTPGGRLWAGWYAGPINEDRFNYVMAAISDDDGNTWSDLKFVINPDGDGPRRASDPCFWLDPSGKLWLFWWMNGGGLNVTMSITTENPDAENPNWTEPRALFPGVMINKPIVTKNGEWLMPAAIWRQDDSCRVMVSKDQGRTWALRGAANVPKDRRNCDEPMLVERQDGSVWLLVRTSSYGIGDSVSTDAGRSWTEVKDHLQQTTSRFHIQRLASGNLLLIKHNGIDERSRGRNHLTAYLSADDGKSWKGGLLLDTRDMVSYPDATQAPDGTIYVIYDWNRADEKHILLTTFTEADVLAGKFQSSKARQRVLINHATGVNSKPWLKKQRVTSLNKHETAAVLLKKPGAQLKPVNGEIRDIKLGEAIFSNRSYAFHDKLPSFLQDGNFIFSPMENTEVDCTTLGVVYVVTPLPDRNRDSVTDELQKQGFELVSIPEFVLFLMPGGREIPGNVCSVYQRRVSAGDRIKFGKWGVVITKPE
>NZ_CP042910.1|WP_002647448.1|4529643_4531008_-|DUF1501-domain-containing-protein
MAGKPCSGPVNRREFMRIGSLCLGGLSLSQLLALRSEAGQPRQDTSVILLFLHGGPSQLETYDLKPEAPSDYRSLFNPIATNVPGMDICELFPRQAKIADKFSLVRSLHHDVGIHSDGGIIVLSGKRPSKLDPSSGSKSEHPDFGSVTSAVRGLSGKGTPPYVSIPSKFYMVQPTYLGLQHGPFESTEPSSANYRPPSLKLQAGLDGQHLVERRQLLRQIDRLRNDLDLNGDLAGNDKFRDLAFQMLTSPDAASSFEIDREPDSLRDRYGRNMWGQGCLLARRLAESGCGVVSLFFNTPKNGQEFTNWDDHILNAGRPGHFAKYMKVRLPYMDQALATLIEDIHERSLEKKIMVVAVGEFGRTPRLSSNNSGTGRNHWPQAYTALFSGGNLKMGQVVGATNSKAEYPTHSPCTPQDMLATIYQHLGIDFTQSLVDHQGRPIPILPHGKPIAELI
>NZ_CP042910.1|WP_002647449.1|4528211_4529177_-|DUF1559-domain-containing-protein
MLNRSHGRRSGFTLIELLVVIAIIAILISLLLPAVQQAREAARRSTCKNNLKQIGLALHNYHETYGMFPIGGTGDRDLPPRVSWQVRILPYVDQATLFNQIDMSGATASAVQATLADGRIVREIPMTIYTCPSDPYNQPRGGYAQCNYAGSMGSQSAPSGSSACSPFQVYALKSTLYGKTLLKGGISGMISRNGASIRIADVLDGSSNTIQVGETLPSCLDADRGSWSYAQSTCNAETMTLTPINEFTTCDQLGSSRRITNSACTAHTQWNYSLGFKSMHSGGAHFLMVDGAVRFLSENIDHADTFQHLGDRADGAVLGEF
>NZ_CP042910.1|WP_002647450.1|4527527_4527956_-|carboxypeptidase-regulatory-like-domain-containing-protein
MNRFTGILLLISAYTLFGCSGSDGPQVAAVEGTVTWEGKPLADAGVAFTPEKGPVAIGRTDESGQFSLSTQGRDGAVVGPHRVTIEAFEPLPPGKKAVSEEGEVLIVPVSRIPSKYGILTKSGLEARVTANDSENNFEFELK
>NZ_CP042910.1|WP_081459541.1|4526616_4527228_-|sigma-70-family-RNA-polymerase-sigma-factor
MGVRLLIETRITACCHDKDGSGVVLEKLAEQKNQESQFTKLLTAHRRQLYAFIYSLLADHADAEDVYQRCSMIMWEKFDQYDSSCDFLPWAMGIAFYEVKNFQRVSSRDRHHFSEQLLEQLFACMSTHKNDHSTQMLSLEKCLKSLRQKDLWLVQQVYWERRKCSAVAEEIGMKINALYDRVGRIRSQLKDCVRRRVAEVEHV
>NZ_CP042910.1|WP_002647452.1|4524989_4526624_-|FecR-domain-containing-protein
MSDNNQKNDEEFRRLLSRLAEGSLDKADAEVLESLLINQPERQALYLETMWLDASLIELGGVHNSAPELKVIRAQRKYSFPFSGWALTAIALSCLVVTVLLTFPVFEQRKQFAENESAEQAVESTTGRKNHDELLSEAILIAGHRTVLRGSSSPISIGSRFRFAEHYMLQEGLIKILFASGAEVILSAPAQFQVVDNEKLAVNLGNCSVYAPAGAEGFEVTTPTSEVIDLGTRFSVEVAEDGASSVSVVDGEAEVTPLSKSQKRTLFKGDSAYVGTDLHILEGGEKPQVDAYVASIPDRLIAYETIQDKLGQAKELSSLTVQRGGVSRTYHRDDFILPGINHFRPQTNVFGVVPANSPPDEFNRFGSMNLLFASGFINPGGQKDYFEGDFISGKDGTPGMNIVFDQPVINSPGPDIVIFDAQSIAHSLEGDVFHLYPHSSHPNAHPATFMKYDIDGYSADAQFMTGCRLIHLSQAFAEDGTPLPKFGRSQLINRVPSRMFAIGIDLDDMNIPPGGSITGLFLQDAQDDKDCIDPVVIVGLPPVK
>NZ_CP042910.1|WP_149303777.1|4521753_4524675_-|DUF1549-domain-containing-protein
MPPSGKLKEKQIKILEKWVALGAPWPGADDSVPVRKEHGPAFTDEDRTWWAIQPLQEVIVPEIENSDWGRNEVDRFILAKLKQQGLAPSPEADRKALIRRVYFDLHGLPPTPEEVQEFVNDQSPDAYERLVERLLDSPRYGERWARHWLDVVRYADSDGYRADGFRPNAWRYRDYVIRSLNEDKPYNQFVQEQLAGDELFPDNVDAQIATGFLTHGNYEWNSRDVAGQWNLMLNELTDTVGDVFLGVGMQCARCHDHKFDPILQKDYFQLRAFFEPILIQTDQVAASAKQLEKYNREMADWEQATKEIRQEIEEIQIPYHKKAEAVVKSFPPEIQAMIDKPEEERTPRERQLVKLGWRQVEYNYDRLDRMLKPEDKEKVLALRRKLAKFDKLKPAPLPVAQQARDIGPVAPKTTIPKKRIECKPGFLTILDETPGDYFNSQSEETTSRRSALAQWLTQESNPLSTRVIVNRIWQYHFGKGLAPHSSDFGRLGGPPDHPELLDWLTRQFLEDGWRFKNLHRLIVTSATYRQSARHPQEAEMSALDPGNKYYWCADTRRLDAEQIRDSILSVTGQLNPQAGGPGVAASVPRRSIYLRVMRNSRDPLLDVFDLPRFFVSVPARDTTTSPVQSLQLFNSQQMLRLADQLSKRAFDESKTVPEAKREEAALRRAWEIVFGRSITDEELTIAREFLARHSKMLSEQEITVDLQELETATMPYRTGQSVVFQADKPSPFYVADDKQLKPENCTIEVFFQVRSIYESGAVRTLASKWTGKVPEPGWIFGVTGRGSRRKPQTLVFRTFGKRNDGSVGDEIIFSDQHIQLNTPYYAAVSFHVSGKQAGTIDFYLKDLSNDDEQLGRITKKHRIVQVQDNNLPIAFGRMVRNSQSYFDGLIDDIRFSSKALDAPSLLFTQESVTKDTLGYWKFDPVPGMFQDSSNHQHHITHEDQLSSAGNPRRAAFVDLCHILLNSNEFLYVH
>NZ_CP042910.1|WP_002647440.1|4538850_4539489_-|hypothetical-protein
MQYFNLRRFAVLLVILSGTSTLLAADAELAKHITVPTDWKGEQISLPPSFAREMKFKGLEEARFSPGMFQEKSNTFFSYFFVFKIDPGSELTQKNIERELLTYYQGLSRTIFNSRKAKVDTSGFSCELKKVVPVDAQKIYPEGLTEYSATVKWIEPFVTQKPQTLHLIIQVWTDKTTKDGYLFACVSPQEMKAEIWQSMQNIRDSFYRSLQK
>NZ_CP042910.1|WP_002647439.1|4539522_4540860_-|Gfo/Idh/MocA-family-oxidoreductase
MTSTSDTTRRDFLKTSVAAAAATTFAAPAFVRGQNLNSQLQFAGIGTDGKGYSDIKLIASHDKVKCVAFCDVDLSRTKKVKPLAPEAPVFQDYKIMLDELGDKIDAVSVSTPDHTHAIISMDAMQRGKHVYCQKPLTRTVWEARQMRLQAKKSGVITRMGNQIHSHSAYRTAAKAIQDGVIGKVKAVHSYVGTTGHGRSGLLNKPANNEAVPKTLDWNLWISVAPMRPYGGNRVYHPFTWRDWQDFGSGAIGDFGCHLLDPVYTALKITGDPISVHSEHTGMNDEVWPAQETIKYVIPGTQYTAGSSLPITWYDGGRRPSDSIAKLLPGQSLPSGGSIFVGEKGNLILPHYRQPFVNIEGVNIEPVESLDHYHGWVDGCLSGKQPSDGFEYGGHLTEAVQLGNVAAFFPGETLEFDGKALKITNNSEANKYLTRDYRAGFEIASI
>NZ_CP042910.1|WP_149302988.1|4541439_4543362_+|DUF1592-domain-containing-protein
MSVLEARFVRGVIAGLVWGLWVCPQAGLAASKENKALAARKAEAEQFFSKQIKPFIKKYCIDCHQNRRPTEAGLSFDPALRSPGHAAFSEKWKKSAARVKAHDMPPEGLDQPSDKERQMFAKWMQQIKYLSPKDPGPFVIRRLTKTEYGNTLHDLLGVDPDIVASLPDEVSGEGYLNSLSPLQLEQYLAISEKVLNQVVAPEGKPPTAIQLELFGEPPTSETDAKSNARKLAKSLARSAYRRPPSAAEVDVLLKVFELGRQNDLSYQASCRLMLKAILVSPQFLFITPAREVETEKGIVPLDDYQLASRLSYLLWATMPDAELLTLADQGKLHELPVLKDQVTRMLMDPRSRALFDGFGAQWLKLGNLHTRTFDPKKFPQMTAALRSAMYDEARLFFESIVRENRSVSEFIDSDYTFLNGNLASIYGLENTVTGPEMRKVKLTNGNRGGILGMPGVLAATSFPNRTSPVNRGVWVLEQVLGDHVPAAPPDVPSLEKQDQKQIASLTLRERTELHRSEAVCANCHRLLDPIGFGLENFDAIGRWRDLDENGQAIDASGELPGGRNFSNPKELKAIIAQHNAKFSRNLVERLLAYALCRRLEGYDEIVIDGLMQKIAKDDYRIQTLITEVVTSYPFMHRRIE
>NZ_CP042910.1|WP_002645287.1|4543455_4544844_+|DUF1552-domain-containing-protein
MSNYKRINRRTCLKGLGATLALPLLDVMGWAEDSEKKTFQPPVRMGFMYMPHGVIMDQFWPKDPKTFLTSPPPALESLRPVLDQCLLMKGIAGVSNGPFRGAPHALELSTWLTAALPDPDKRDEISISISADQIAANSLGAFTALPSLELATMPQTWKENQAGLNEAYYSHCSFRSPTQAVPAETNPRNVLNRLFNKKEKGDGLSANGMSSLDRSMLDLVIGGARDLRRTLSKTDQRKLDQYLDSVRSVERRIAAIEIRQKEAALEKAGVRPNRSHKTDSPPIEIKIPEGDKRSEYMQVMCDLNVLAFQTDTTRVCTYIGSTPNGVSYPELGFNDQHHSQTHHNGEKKKVDKVAAITKFNIDQFAYMVNKMHSLKEGDGTLLDNCIMMWGSGLEDGDRHSRANLPFILAGRGGGAINTGRFLPDVKGNQGDLLTTLLTCAGIPLDRPVGIATKQIAEIPAQS
>NZ_CP042910.1|WP_002645286.1|4544903_4546328_+|exo-alpha-sialidase
MRITIRSLFSSLLLVIICTTNAVAQDSSKSNTEERPAPRIKLTMGEPHVIVRGIRPEEQLWGPYQFPRPYRLKDRFVVSVHVKNDDISNYGATALWFESRDQGVTWKEVDDSIAQECGLLLPSGDRVYLPPESGVDVSEYKQIPWNKYTPAYDFSKQAEEGTLPIPDGMTFWMGGTTINAFNADRLPPSMSKKEWTLYRIPAGQTKPVQEQADVDWPYLTRVVHVSRNGKKVLKSIFPRGNPKLGPDGAIWVSVFSGEGHLNPENGQYSPYYSAEIFRSEDNGKTFQRRSHLEYEANGHEFPYKSGGFSDSDFEFMPDGSIVWFLRSTWYSSTGKEWDPMYMTRSTDLGRTWSKPVKFDDVGILPRLCRLENGVTLLCYARPGTFVRAALNDSGTEWTEPLVVMTPGDRSGLANKPVADPTFHDWDGSCNNPEIVPLDENSALLFYSDFYYPDESGVKRKTILCRKIMVERQAD
>NZ_CP042910.1|WP_002645285.1|4546453_4547212_-|hypothetical-protein
MYRLSALLMFLLPALVQAAPHKIIHVVNPHHVSRAEYLADLRANSSLTDDQIDDRYREFLHDRERSQRGLILKLRVLIKKYRLKGIYLQGLSEKNHQATLDYLESLKQYEKTNTINESEFEKRKKDQNRLDLSELGAAGQLVITGELQTILPAEDAKAFEAVNSVKSDGSIKFVEKEEHERENAIVRNLMKADGVAVIVLSRDHNLADNLKELGFSCRYVITGSDPPVESNIDTFKNSIFKRSDKLTGNRLK
>NZ_CP042910.1|WP_002645284.1|4547696_4549169_+|aldehyde-dehydrogenase
MPAWPEKMYIDGKWVDGRSETNWTITNPATREPLAEIALANASDVDLAVTAARRAFDKGEWPRLDPLQRGRLLYKLAERIRESAEDLAMTDTLNIGKPIRDTLGFDIPCGADVIESYAGLPDKIAGHSYGGLPDNVTMQFREPMGVIAAIVPWNYPMTNAAIKLAPILACGNTVVLKPSEVSPLSALMLAKMAEEVGFPPGVINVIHGTGAEAGTALVKHPGINKIAFTGRYETGAQLMEAAKDGMKGVLLELGGKTPSVVFPDAPLDHVVNGVITGIFCHLGQICVAGSRLLVHESQHDELLERIIAKAQSLKQGDPTDPEMHLGCLATPTHCGFVRSRVEQAKQEGARLVLSGDISDDPLDCFYPPTIFDQVSPDMAVAKEEVFGPVLSVMTFKTEEEAIRIANDSDFGLMANIWSTDGTRALRVARELQAGRISINGGGYLRPNVPIYGYKKSGFGAELGFIEAAHEFCNSKSVIYSLATEKSPWPE
>NZ_CP042910.1|WP_002645283.1|4549419_4549857_-|response-regulator
MLQNRFSILLVEDDDVDREVVNRAIKRQELDCSLYTACDGAEALSILRGESSEKLNEDFVVLLDLNMPGMNGLQFLDELREDPELSHTIVFVLSTSEHPLDIAKAYKKNVAGYFSKTQVDLLVKMLSDYAQASLFPNPRVIQSIH
>NZ_CP042910.1|WP_081459426.1|4549905_4551768_-|HAMP-domain-containing-protein
MIDKIKPKRMTSLQWKIYIGFGGMILLLISNGILGIYGLGNAMQSFDQYRDVEKTYNESLSIDRNVQELKRRVNQYINTGHSSNRDAVQVTFEKLQKQVSGLLSDVNDKEISESLIIMNSHLEAYFKNFTLATEERQLRTSLVQTSLPEQGQRVQVNLENLEAQVHGSPKELSRHYLAALSAQRFFALAEKNALRYFAEPSTPFVDKTLSSLQDARSIIESIQAEALNSEKVLVNDLLSQLDEYEKICLRAFQATRSYLYLVNVVMSGEASEFAYYSMQIKNIAESKRTEINQATIVHTQDIKNITTIAIIGALLIGLYYAWRLAYSVVQPITAMTETFRRLGAGETLITIPATDRNDEIGEMATAADIFNKQNFVTKNLLQQSQTLSQELIQKTRELEMINSELDNFAYIASHDLKSPLRGIDQLAKWIQEDSAEELSEESCVNLNKLQGRIRTMETLLNDLLEYSRIGRITGECERTDTGAMLKEISELIDNPEKIQITIAPDMPVLNTFRTPLRHVFLNLITNAVKHHDHPETGKINIDYRELPDFYEFSVKDNGPGIDPKHHDRIFQMYQRVGNTTAEGSGMGLAIIKKQIETLGGTISVESAEKQNTIFHFTWSK
>NZ_CP042910.1|WP_002645281.1|4551831_4553130_-|extracellular-solute-binding-protein
MSTADSTDNIKQTRTTRRTFLKKTLALSSGVGAFTNAPYVFARHRTKLRVLGTHVTLQEELRKKAQQDLGIDIEFQPGGSAAVLHQASTRPASFDLYEQWSNSLKVLWQANAIQAIDIERLKYWDEINNLTKTGRITTGAKLGAGDAPSKLLYVQKDRSLSSVPSQQVSFLPYVHNVDSFGYNAGVIPRGIPYKTESWSWLLDERYAGKVALVNAPSIGLFDAVLAVQAKGLMKFKDIGNLSRNEIDELFAILIELRHQGHFRGVWSSGPQSVRLMQRKEVVIESMFSPAVFDLKGQGIDCVYAAPKEGYRAWHGVMCLSSQTQGAVKDAAYDYMNWWLSGWPGAFIAKQGYYISNPERSRSLLTDNEWNYWYEGKPALTNLAGTDGRVVVKQGEIRNGGSYLERFSNVAVWNTVMDTYEYSLLKWNEFLST

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Crispr_ID: NZ_CP042910_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042910_2

6915002-6915189

Orphan

Consensus_repeat	Method
GGCAGCGACAGCGATGTCAAACT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP042910_2

>merge|NZ_CP042910|2|6915002-6915189|CRISPRCasFinder
GGCAGCGACAGCGATGTCAAACTGGTGGAAGGTGACTCAGAACCAGACTTTGAAATACTGGATCTGGAATCTGGCAGTGACAGCGATGTCAAACTCGTCGCCGACGATTCCAGCCCGATGGGCAGCGAAAGTGACGTCGCTCTGATTGGAGAAGACTTCGACCTGGGCAGCGACAGTGATGTGGCGCT

>NZ_CP042910|2|2|6915002-6915189|CRISPRCasFinder
GGCAGCGACAGCGATGTCAAACT	GGTGGAAGGTGACTCAGAACCAGACTTTGAAATACTGGATCTGGAATCT
GGCAGTGACAGCGATGTCAAACT	CGTCGCCGACGATTCCAGCCCGATG
GGCAGCGAAAGTGACGTCGCTCT	GATTGGAGAAGACTTCGACCTG
GGCAGCGACAGTGATGTGGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042910.1\|WP_002648903.1\|6912797_6913385_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183566
NZ_CP042910.1\|WP_149303886.1\|6923273_6924617_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042910.1\|WP_002648912.1\|6902150_6904379_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|224054
NZ_CP042910.1\|WP_081459609.1\|6904384_6905509_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP042910.1\|WP_052301285.1\|6926363_6926678_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP042910.1\|WP_002648899.1\|6916252_6917311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042910.1\|WP_002648894.1\|6921558_6922557_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042910.1\|WP_002648898.1\|6917393_6918218_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NZ_CP042910.1\|WP_002648891.1\|6925042_6925864_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP042910.1\|WP_002648902.1\|6913509_6914064_+\|phage-shock-protein-A	unknown	unknown	gnl\|CDD\|274372
NZ_CP042910.1\|WP_002648897.1\|6918658_6919186_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274379
NZ_CP042910.1\|WP_002648895.1\|6920667_6921531_+\|DUF1559-domain-containing-protein	unknown	unknown	gnl\|CDD\|284919
NZ_CP042910.1\|WP_002648906.1\|6908743_6910147_-\|sulfatase	unknown	unknown	gnl\|CDD\|293763
NZ_CP042910.1\|WP_081459608.1\|6906065_6906662_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP042910.1\|WP_002648905.1\|6910321_6911305_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP042910.1\|WP_002648904.1\|6911321_6912557_-\|DUF2088-domain-containing-protein	unknown	unknown	gnl\|CDD\|370728
NZ_CP042910.1\|WP_002648896.1\|6919185_6920553_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NZ_CP042910.1\|WP_002648907.1\|6908086_6908710_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_CP042910.1\|WP_002648908.1\|6907152_6907989_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP042910.1\|WP_044239974.1\|6922747_6923173_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378467

Protein	Function_ID	Function_description	E-value
NZ_CP042910.1\|WP_002648903.1\|6912797_6913385_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|183566	PRK12513, PRK12513, RNA polymerase sigma factor; Provisional.	6.48789e-42
NZ_CP042910.1\|WP_052301285.1\|6926363_6926678_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.39632e-08
NZ_CP042910.1\|WP_002648912.1\|6902150_6904379_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.08537e-92
NZ_CP042910.1\|WP_081459609.1\|6904384_6905509_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.05853e-51
NZ_CP042910.1\|WP_002648894.1\|6921558_6922557_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	2.97376e-60
NZ_CP042910.1\|WP_002648898.1\|6917393_6918218_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	3.00817e-26
NZ_CP042910.1\|WP_002648891.1\|6925042_6925864_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	3.98998e-33
NZ_CP042910.1\|WP_002648902.1\|6913509_6914064_+\|phage-shock-protein-A	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	9.48908e-18
NZ_CP042910.1\|WP_002648897.1\|6918658_6919186_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274379	TIGR02989, Sig-70_gvs1, RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).	5.2172e-35
NZ_CP042910.1\|WP_002648895.1\|6920667_6921531_+\|DUF1559-domain-containing-protein	gnl\|CDD\|284919	pfam07596, SBP_bac_10, Protein of unknown function (DUF1559). A large family of paralogous proteins apparently unique to planctomycetes.	3.20072e-53
NZ_CP042910.1\|WP_002648906.1\|6908743_6910147_-\|sulfatase	gnl\|CDD\|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP042910.1\|WP_081459608.1\|6906065_6906662_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	6.60497e-09
NZ_CP042910.1\|WP_002648905.1\|6910321_6911305_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	5.0749e-37
NZ_CP042910.1\|WP_002648904.1\|6911321_6912557_-\|DUF2088-domain-containing-protein	gnl\|CDD\|370728	pfam09861, DUF2088, Domain of unknown function (DUF2088). This domain, found in various hypothetical prokaryotic proteins, has no known function.	3.60948e-17
NZ_CP042910.1\|WP_002648896.1\|6919185_6920553_+\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	8.64034e-09
NZ_CP042910.1\|WP_002648907.1\|6908086_6908710_-\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	3.43219e-42
NZ_CP042910.1\|WP_002648908.1\|6907152_6907989_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.95128e-29
NZ_CP042910.1\|WP_044239974.1\|6922747_6923173_+\|hypothetical-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	0.00195589

>NZ_CP042910.1|WP_002648902.1|6913509_6914064_+|phage-shock-protein-A
MSYFSRLTDIVTCNLTHLLNNAEDPVKEIEQIISEMKEGIAGANRSVKTASANEQAIQQELADYESQIFQWKEAAKNALGMGDETEARNSLVRKQEVEDLKAGLEQQHRAAVATCEHLTTTLHALEARLAEARRKQVELTEQTGLSETSAQSTSNTTDAESSLNPSRSEQIDSELAELKRELGQ
>NZ_CP042910.1|WP_002648903.1|6912797_6913385_+|sigma-70-family-RNA-polymerase-sigma-factor
MTEDDQLMIRIQSGELRAFDELVEKYQGPLIGFFFRNTRDSQISEDLSQETLLRVYNQSWDYLPQGRFRGWMYRVARNLMIDNIRRQSHDALIKAYTGKQADEDDSLNRLASEVVSPEEKANVKELALIVDELLATIPEDQRLTFTLHHYSELTLNEVAEVMETNLATAKSRLRLAREKLREKLTLMGVTGPQKK
>NZ_CP042910.1|WP_002648904.1|6911321_6912557_-|DUF2088-domain-containing-protein
MTETVNIELNYGFNGTFQCEIPSERLIHYHQAPAGIDDVAARMKQVLNSPLELPPLDLAVVPGDKITIAVDYQAPAAAEVINSVWDYFSDCGIEAGDVTILQTSSESSMLQEKLKAAVNSELQEQASWVIHAPDSKEEVGYLGTSAGGERIYLSRHLLEADFILPIEKVGFDPLIGYAGGGSSIYPGFSSQEAIIKSRGQSHRELTPAESRPLRQLIDEIGWMLGLQYSLQVIPAGGQSVSEIVFGSLEATFRKAKQLLDEYWKLEPEYKSEMIVIAVEDGPTGHQWNQLGSVLETARNLVAQDGRIVLLTQIDSALGEGLQILSRCHEPLDAIKPLRDSQPGDLLAATQMALTGDWALICLLSKVSSDEVEDLFVIPLEDEAEVQRLLQTDETVSVIASAQYAYGQLKQG
>NZ_CP042910.1|WP_002648905.1|6910321_6911305_+|Gfo/Idh/MocA-family-oxidoreductase
MKKIKVGQIGVGHPHAGGKMQAFRKSEEYEVVGVVEPDEKLRAYAASTGIYKDLPFLTQEQLLNIDGLQAVAVETQVADLLPTAETCIAAGKHIHLDKPAGLSLPHFKRILDQAAQKHLLLQMGYMYRYNPGVVLLRDLLQKGWLGAPFEVHTVISKKMDAASRKQLEPQPGGMMFELACHVIDLVVEILGRPDQVTAFAQHASDIDDTLQDNMLAVFSYPRALATVKTSCNEVQGFDRRHIVVCGSEGTFHLQPFGRPSASLTLAQAKGKYRKGQQEISFSGYTRYQDDVADMAKIIRREKDIDFSYQHDYDVQETVLKSASLPVT
>NZ_CP042910.1|WP_002648906.1|6908743_6910147_-|sulfatase
MLEGIPMLRTLVFCCHLSMLSQASAENQRPNIVLFFIDDLGWRDVGFMGSDFFETPHIDRLADESMKFTAAYSAAPNCAPSRACLMSGLYTPRHGVYTVGDPARGNDRYRKLIPAENNRVLDDRFTTIADRLSQAGYRCASVGKWHLGQSPLSQGFQVNIAGNQTGSPRGGYFSPYQNPQLSDGEQGEFLTDRLTTAACQFIKDNQGSPFFLYLTHYAVHTPLQAKKEDIAYFQSKPAGKLHQHATYAAMIRSMDQSIGRVLQTLREQQLDQNTIVVFTSDNGGYGPATSMLPLRGSKGMLYEGGIRVPLLIKWPGVTQPGSTTGEAVINVDLYPTFLEMTNIPVLESELLDGESLVPLLKDPQTRLESRSLFWHFPAYLQKYQGMQQRFRTTPVSVIRQGDWKLLEFFEDGHQELYNTRLDIGESKELSGSHPEKTQELSQALHRWQKQVKAAIPAELNPEYKPED
>NZ_CP042910.1|WP_002648907.1|6908086_6908710_-|MarC-family-protein
MEWDDIFRDFVYLWAVIDPIGSIPVFIAVTAGTSRMVQRKIAYQAIITAGLVLLLFIVGGQIMLDLLEIPLAAFQIAGGLVLFLFALTMIFGDSKPETEIEESTHINAHQNKAVFPLAIPSIASPGAMMAVVLITDNHRFHIGQQLISTLTMMTVLLITLGFLLLAGRIQKLIGDAGASVVSRIGGLILASVAVDSVLSGIKTYFGI
>NZ_CP042910.1|WP_002648908.1|6907152_6907989_+|OmpA-family-protein
MPILVRVCLLTAVSLFTISQSACQRGPNAQLRQSMYRSQQLYDQNSELAMQRDQFQQSANALQHERDQLAMRAQSLESNLNIANKRLDNLNAERSEMQQRYVSLMKKAKGQPSPLDGEATRRFQELADKYPDFEFDPITGVSKFHSDILFSSGSDNLKPAAQEILNQFAAIMNDGNAKRLNVLVVGHTDDKPISKASTQRQHRTNWHLSTNRANSVVLTLSKFGVKQERMGAAGYSMFQPVVPNQNDSARQKNRRVEIFVLAPDAVVAGWDPNPTLLN
>NZ_CP042910.1|WP_081459608.1|6906065_6906662_+|type-II-secretion-system-protein
MVSHLPSRRRGMRRGFTLIELMVAIATIAVLIALLLPEIQKAKDASLKSSQKDGPYWVYREYEYAGGPVISEISGTYKHSLQEILDMYAINLKKQQKQNELELEQIAQLEQMTDEDAVAIALKPVEPKTQRVPSWHKRHTDLGAQEISRKEKIAKTKRALKNFKFDLSQNTASLVARRNLVEAIEELKHDLKQLESQD
>NZ_CP042910.1|WP_081459609.1|6904384_6905509_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKKIAGLLVVGVVLIVSLVFSQNRHVPLRVSGFIEADDIRPGSRVGGRVKQVLIEEGQSVSQGDLLIELEPYDLLERRAEAIAGLAEVKAQHAELVAGFRTEEIDEAAAKVDQLKARLTLLINGPRQQEIDSAVAELHLADAEYRLAKAKQMRVETLFGQKSASTDELDTANTELQVAASRKEVKQKSLDLLKEGTRKEEIDEARAQLKQAEAALQLLRNGSRKEDIEQAAASVRKAEAFLQTIEDQIKELKIVAPLDGTIEAVTLQPGDLVGSNVPVVSILDWNALWVRCYVPENHLDIQVDQEVEVTIDSYPDKTFKGRVSFVSRQAEFVPRNVQTPEERSKQVFRIKVRITDKDKLLRPGMAADVWLHGKD
>NZ_CP042910.1|WP_002648912.1|6902150_6904379_-|ABC-transporter-ATP-binding-protein/permease
MTTVIKVDQLSREFGSLKAVDQVSFTVQRGAIFGLLGPNGSGKSTIIRMLCGVLEPTGGSAQVLGYDIVDDAEMIKRHIGYMSQSFSLYADLSVRENIEFYGRIYGLSPEKLEQRFQEIIELTSLQDRLDQLAGNLSGGWKQRLALGCALIHEPQVVFLDEPTAGIDPVARRDLWDLLFQLAGQGVTLFVTTHYMDEAERCSDVGYIYNSHLIVCGKPNELKQLPTVTPEGTARWEIETANPATLLTTFREMPGVRDATLFGQTIHVLADQSLSENDFTRQVPHEFGTVQVRHITPSLEDVFVTLSRAEELNHQGAAVPTTVTASQQRSEGEPLDHREQVALPAQTQSVKRPAAEQVTPGILAGFWAILVKEFSHVRREPSTLLFVFAVPVLQTLIFGFAIDTEIENIPTVIFNLDGRASSRELQDGFANTRTFRIVEHVYNHEDFRNAFESGRAKVGVTIPPDYSDRLLKGEQVSVQVLIDGSDSQVATTALNASNLLGFNLSTSMTRSFAENLNVVPARDADGQPALPVEIRPRLLYNPDLDSSYFFVPGLVGIILQLVTLFLTSFAIVRERELGTLEQLFVTPVSKSGLLLGKLAPYALIGFVETLIVLTLMVYFFGVPIHGNLWELLLLSLLFLVCGLGLGMLVSTIARTQLQAIQFAFLIMLPSVLLSGFMFPRSQMPLPIYLVTFIIPVTYFLEILRGIVLRGANLTDLLPYVLGLSLCCIAIIGFSLKRFQKQLS
>NZ_CP042910.1|WP_002648899.1|6916252_6917311_+|hypothetical-protein
MYQKSLCLLVLLALVISSPLQAAERTLRYRDRKPQEYKLTARASKIDPRTKEHPEIDYVFEAKGKPQDVEHAVVDTRVKPRGKLVIWLMGYNSQLFDRLSSYGLHAIQVHYANRWFSKVCRENPVGETCRGNVRLEAATGEDYSDQVSIPHPDGMKERALQFVKWLAKENPQGQWNYYLTPDGKDLRWEDVIMAGSSHGSTTAARFAKHQKVSRVVMFCGPRDQLQNWQMLPSATPTNRYFGFSHVLDGGWTADHYCRSWELIGLNEFGPIVNVDKAKPPYGNTRRLITDFDVKNNTRRAHSSVVPGGNAGKNAQGQYIHEAVWRYLFTEPVDKVGKPVPLDPGCEKNQRDS
>NZ_CP042910.1|WP_002648898.1|6917393_6918218_-|class-I-SAM-dependent-methyltransferase
MRELMNRKTQYVIRGGVEGRERLRVLGRVMAESTGTLLDQINLTEGMTCLDVGCGGGDVTCELARRVAPVGRVVGVDIDETKLSIARQEAAEQGLTNIEFRLSDASEISATPEFDLVYSRFLLTHLKDPVSAVRSFLKQLRPTGFLVVEDIDFSGSFNYPESPAFQKFFDLFNTVVRHRGGDPNIGQRLPGILHDCGIQNLKVSVVQPTGLQGEVKQLNGLTMENIADAILEDDLATPGEIDEIVRELYDYAADPRTLSGVPRVIQVWGRLPFA
>NZ_CP042910.1|WP_002648897.1|6918658_6919186_+|sigma-70-family-RNA-polymerase-sigma-factor
MNEVILNNEFFQQLLKHQGQLHAYVLSLVGNTSDAHDLLQDVNQCLLEKQSSFTLGTNFLAWSRKVAFFKIQSYWRDQSRNRMLFDDELLNSMSETIECMPDLYNEQIEALKTCITHLPSDKQILMQQRYGQFLPLKQIAEYWGKSEKAIGVMLLRVRLRLQDCIQKSIAARSRI
>NZ_CP042910.1|WP_002648896.1|6919185_6920553_+|FecR-domain-containing-protein
MIRENSTSWEDPLPKLVALYFDNQLNERELKQLQTRLKSDPEARIFFVQFSALQTQLEWIHTDSSSPQEMTHLPGSIYSRKKNWNLILYVTCCVCLVLGGLLSMHLMTPVAHVFPEPGSVWSSGNITTEEKLLPGSRRHLLRGAIEIRFTSGSIVNLKAPAQFTVHNSNEIFLQAGKLVADVPESGHGFTVETQTGKIIDLGTSFSVNVGAELNTEIKVYRGKVQVAGSKETEPPREIRANEAVQIDPVSNLIQPGDYTSSDFIPLISRDYAVDQFSDNVIFQEQLPDQIAQGEFQVLERDGAIFLFPEKRDILLSENLPVSITQPGDYRAEEQIETETDFVSRGMKVDCYRIYYDPASNHRDMIRAEGVVHFHQPILGLITTKTRLLETDSVLNPLCAGGNCPPIQHQEVEARVAEDGTHQDILSLSEDRKTLKFILHTGTKYVDEFRVLVASP
>NZ_CP042910.1|WP_002648895.1|6920667_6921531_+|DUF1559-domain-containing-protein
MQIPRPAKRLRGFTLIELLVVIAIIAILIALLLPAVQQAREAARRSQCKNNLKQIGLALHNYHDTHRVFPSGVVSSNNLAWSTMVLPFIDQAPLYNHISSATDSFAEPWEDANYDGTLDDPIDEANTVIPALLCPSDTTGGRNSKIGNYGTSNYIVAHTASNAGETADVLASFYENSSRRMRDYTDGLSNTVQVVERTGQGTYKGSIWIGRRDGIDVFEIWTRIDRISNDDHYRPNGTIWAATSSLHVGGAHVLMGDGRVRFVSENISIETWAALGTINGGEVIGEF
>NZ_CP042910.1|WP_002648894.1|6921558_6922557_+|DUF1559-domain-containing-protein
MHIHRPAKRIRGFTLIELLVVIAIIAILIALLLPAVQQAREAARRSQCKNNLKQIGLAFQNYHDTFNMFPPGYVDERGSGGTLADNEGHWAWSTMILPYLDQAPLYNQMNPGPITPSTALNDAAIRTSMQQPLAAFRCPSDTGPALNGNAGQGIQSDGGTNYELPVSNYIASNNNRTLRQSRSSNGANGGSGATGAFWRDSNLRFRDITDGASNTILVGERSYKVGTVDFYAGTLYAAREFGGTNGPEQASGNQGLIAIFGGSTYSINPTNPSNVATRQAYSSQHTGGAHFGLGDGAVRFISENINLNTDDAVNSTLESLIGVADGQILGEF
>NZ_CP042910.1|WP_044239974.1|6922747_6923173_+|hypothetical-protein
MMLRILSLCLLNCFTCLIMSGCGNAGPELATVTGNVTLDGKPVPDARVDFSPQEGRASVGTTNAEGVYELQYSLEKEGAVIGSHNVKITTERATTGGEGNEPLVPGSKELLPSVYNSNSQLTAEVTSGENVIDFSLQSQPD
>NZ_CP042910.1|WP_149303886.1|6923273_6924617_-|hypothetical-protein
MIMACFGEQAQAGYLGAGRYKCCPTEACTSCGDYCAAKECSSTCYKTVVETVWEKQNYTCQKTVYDTVCEKVPVQYTKNVYKTCYRDECYTVCKPVYQTCYREVCYNVCRPVYKTCYKTVTCKRRRPVYNTCYKDVCYSVCKPVYNTCYRDVCYTVRRPICETHYRDVCCTIYKTNYKTCYRDVCRTICKPVHTWHDVEVCCGEWKTVTEHCPGPVVDKCVCEPGTWEYDCSSCCPIYKPGCCKTVKVQCPGTTICRRVWCPKKVTRKVCCTTYERECKTERVPYTVCERVPCTITKKVPYTCVRYECETRTKKVPYTTCQMVRECRTRKVPYTTCCWKEECVTKQVPYTTCTMVSECRTRKVPYTTCSYEQKTCTRKVPYTTCEQVCCTRYVTRTKCVPRTVCVTKTRCVPRQVCRKVPVPTCCPEPTCTAPAPKTCTAPAPTCSN
>NZ_CP042910.1|WP_002648891.1|6925042_6925864_+|sugar-phosphate-isomerase/epimerase
MKFGICQELFVGWDWEQQCDLIAEIGYTGIELAPFAFAERPSDISAEQRAFLRKTAEDRGLQIFGLHWLLAKTEGLHLTTADAAVRKKTASYLVELGELCADLGGDLMVFGSPFQRNIEEGMTREQAYANAAEVFRNCLPAIGERGVRICMEPLTTKETDFVNTCAEALELIDMVGADNFVLHQDVKAMLGAETESIPELIHKYDTRTGHFHVNDSNLLGPGMGETDYHPIFKALKESRYDGWISVEVFDYEPGCEHIARESFRYMKEVWESV
>NZ_CP042910.1|WP_052301285.1|6926363_6926678_+|hypothetical-protein
MARSQRQGSPRLTLKGGFAVAKKKAKKAAPKKAAPKKKAAPKKKAAPKKKAAPKKKAVKKKAAPKKKAAPKKAAKKAAPKKKAAAKKKAVKKKAAPKKKAAKKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042910_1	1.1\|4538438\|34\|NZ_CP042910\|CRISPRCasFinder	4538438-4538471	34	NZ_CP042910.1	888750-888783	1	0.971
NZ_CP042910_1	1.1\|4538438\|34\|NZ_CP042910\|CRISPRCasFinder	4538438-4538471	34	NZ_CP042910.1	1232999-1233032	1	0.971

1. spacer 1.1|4538438|34|NZ_CP042910|CRISPRCasFinder matches to position: 888750-888783, mismatch: 1, identity: 0.971

cgaacggttgtgtatcatgtgtccggtcttaata	CRISPR spacer
cgaacggttgtgtatcatgtgtccggtctaaata	Protospacer
***************************** ****

2. spacer 1.1|4538438|34|NZ_CP042910|CRISPRCasFinder matches to position: 1232999-1233032, mismatch: 1, identity: 0.971

cgaacggttgtgtatcatgtgtccggtcttaata	CRISPR spacer
cgaacggttgtgtatcatgtgtccggtctaaata	Protospacer
***************************** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042910_2	2.2\|6915097\|25\|NZ_CP042910\|CRISPRCasFinder	6915097-6915121	25	NZ_CP015734	Arthrobacter sp. U41 plasmid unnamed2, complete sequence	70766-70790	5	0.8
NZ_CP042910_2	2.2\|6915097\|25\|NZ_CP042910\|CRISPRCasFinder	6915097-6915121	25	NZ_CP015734	Arthrobacter sp. U41 plasmid unnamed2, complete sequence	163652-163676	5	0.8

1. spacer 2.2|6915097|25|NZ_CP042910|CRISPRCasFinder matches to NZ_CP015734 (Arthrobacter sp. U41 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.8

cgtcgccgacgattccagcccgatg	CRISPR spacer
ggtcgccgacgatgccagcccggcc	Protospacer
 ************ ********..

2. spacer 2.2|6915097|25|NZ_CP042910|CRISPRCasFinder matches to NZ_CP015734 (Arthrobacter sp. U41 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.8

cgtcgccgacgattccagcccgatg	CRISPR spacer
ggtcgccgacgatgccagcccggcc	Protospacer
 ************ ********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2436059 : 2536522

Wolbachia_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149302455.1\|2436059_2437046_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	8.7e-31	32.9
WP_002649116.1\|2437083_2437473_-	hypothetical protein	NA	NA	NA	NA
WP_002649115.1\|2438197_2439235_+	cation transporter	NA	NA	NA	NA
WP_002649114.1\|2439555_2444898_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	3.3e-47	35.1
WP_002649113.1\|2444985_2445792_-	hypothetical protein	NA	NA	NA	NA
WP_002649112.1\|2445927_2446518_-	superoxide dismutase family protein	M1ICI8	Paramecium_bursaria_Chlorella_virus	1.4e-23	47.3
WP_002649111.1\|2446731_2447685_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
WP_002649109.1\|2448406_2448748_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002649108.1\|2448873_2450130_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002649107.1\|2450126_2453189_+	acriflavine resistance protein B	NA	NA	NA	NA
WP_002649104.1\|2453779_2454292_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_002649103.1\|2454470_2455064_+	superoxide dismutase family protein	Q9EMF1	Amsacta_moorei_entomopoxvirus	1.4e-20	47.3
WP_002649101.1\|2455294_2456290_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_002649100.1\|2456301_2458842_+	cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_149303678.1\|2458910_2459249_+	hypothetical protein	NA	NA	NA	NA
WP_044240140.1\|2459332_2459965_+	hypothetical protein	NA	NA	NA	NA
WP_002649097.1\|2459961_2461098_+	c-type cytochrome	NA	NA	NA	NA
WP_002649095.1\|2461365_2462241_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	7.9e-52	43.1
WP_002649094.1\|2462312_2462567_+	hypothetical protein	NA	NA	NA	NA
WP_002649093.1\|2462729_2463752_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002649092.1\|2463748_2464918_-	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	3.6e-07	27.2
WP_081459617.1\|2464997_2465798_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_002649089.1\|2466482_2467607_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_002649088.1\|2467653_2469819_+	amylo-alpha-1,6-glucosidase	NA	NA	NA	NA
WP_002649087.1\|2470145_2471438_+	cytochrome P450	NA	NA	NA	NA
WP_002649086.1\|2471558_2472929_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002649085.1\|2472998_2474003_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_002649084.1\|2474326_2475418_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	NA	NA	NA
WP_044240132.1\|2475532_2476888_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.0e-34	25.9
WP_002649082.1\|2476965_2477175_+	hypothetical protein	NA	NA	NA	NA
WP_002649081.1\|2477262_2477457_+	hypothetical protein	NA	NA	NA	NA
WP_149302564.1\|2477843_2478626_-	hypothetical protein	NA	NA	NA	NA
WP_002649710.1\|2479528_2480938_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_002649709.1\|2480948_2483834_-	DUF1549 domain-containing protein	NA	NA	NA	NA
WP_002649708.1\|2483847_2485503_-	hypothetical protein	NA	NA	NA	NA
WP_002649707.1\|2485495_2486023_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_149302566.1\|2487132_2524977_+	tandem-95 repeat protein	NA	NA	NA	NA
WP_002649281.1\|2525059_2525917_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_081459634.1\|2526128_2526326_+\|transposase	transposase	NA	NA	NA	NA
WP_002643562.1\|2526779_2527163_+	hypothetical protein	NA	NA	NA	NA
WP_081459352.1\|2527054_2527606_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_149302568.1\|2527569_2529297_+\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_149303680.1\|2529740_2531264_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.7e-89	38.6
WP_002645298.1\|2531362_2531722_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.4e-10	30.2
WP_002645297.1\|2531715_2532069_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_002649807.1\|2532639_2533149_+	hypothetical protein	NA	NA	NA	NA
WP_002649809.1\|2533367_2533550_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_081459585.1\|2533834_2535289_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_149302455.1\|2535535_2536522_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	8.7e-31	32.9

DBSCAN-SWA_2

6049596 : 6055490

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002645649.1\|6049596_6050064_+	NADAR family protein	A0A1X7QH77	Faustovirus	4.3e-36	48.3
WP_002645648.1\|6050067_6050613_-	RNA 2'-phosphotransferase	A0A2H4UTN1	Bodo_saltans_virus	3.7e-39	43.1
WP_002645647.1\|6050661_6051261_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L2K0	Tupanvirus	8.7e-26	34.0
WP_002645646.1\|6051273_6051963_-	NUDIX hydrolase	G3MA14	Bacillus_virus	1.6e-31	35.9
WP_002645645.1\|6051973_6053965_-	NAD(+) synthase	G3MA24	Bacillus_virus	1.9e-08	27.4
WP_149303257.1\|6054014_6055490_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.7e-105	46.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042910

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection