CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040804	Streptococcus salivarius strain LAB813 chromosome, complete genome	4 crisprs	cas3,DEDDh,WYL,csa3,cas9,cas1,cas2,csn2,DinG	0	10	11	0
NZ_CP040803	Streptococcus salivarius strain LAB813 plasmid pSAL813, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040804_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040804_1

615338-615418

Orphan

Consensus_repeat	Method
TAAAATAAATCTACAAATGTAAACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040804_1

>merge|NZ_CP040804|1|615338-615418|CRISPRCasFinder
TAAAATAAATCTACAAATGTAAACAAAACTCTTGACACGTTTTTGCGATAGCGTTAAAATAAATCTACAAACGTAAACAAA

>NZ_CP040804|1|1|615338-615418|CRISPRCasFinder
TAAAATAAATCTACAAATGTAAACAAA	ACTCTTGACACGTTTTTGCGATAGCGT
TAAAATAAATCTACAAACGTAAACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040804.1\|WP_149561197.1\|609317_610085_+\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_CP040804.1\|WP_070437788.1\|611861_612644_+\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP040804.1\|WP_022496121.1\|620535_621213_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040804.1\|WP_149561198.1\|610071_610653_+\|phosphoribosylanthranilate-isomerase	unknown	unknown	gnl\|CDD\|234923
NZ_CP040804.1\|WP_004183213.1\|618179_618383_+\|copper-chaperone-CopZ	unknown	unknown	gnl\|CDD\|238219
NZ_CP040804.1\|WP_002891598.1\|610649_611858_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP040804.1\|WP_045001519.1\|615443_615875_+\|CopY/TcrY-family-copper-transport-repressor	unknown	unknown	gnl\|CDD\|131745
NZ_CP040804.1\|WP_149561196.1\|608316_609321_+\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP040804.1\|WP_013991050.1\|607660_608227_+\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP040804.1\|WP_002891962.1\|613159_613633_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP040804.1\|WP_149561201.1\|621214_621973_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP040804.1\|WP_149561202.1\|622015_622870_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270412
NZ_CP040804.1\|WP_149561199.1\|614103_615276_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040804.1\|WP_149561200.1\|615877_618106_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP040804.1\|WP_118058206.1\|619895_620576_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040804.1\|WP_049528379.1\|605950_606229_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|376623
NZ_CP040804.1\|WP_013991045.1\|618521_619568_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP040804.1\|WP_149561195.1\|606308_607664_+\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|237431
NZ_CP040804.1\|WP_149561203.1\|623643_624369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040804.1\|WP_045769091.1\|622970_623672_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040804.1\|WP_149561197.1\|609317_610085_+\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.68574e-110
NZ_CP040804.1\|WP_070437788.1\|611861_612644_+\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.83971e-101
NZ_CP040804.1\|WP_022496121.1\|620535_621213_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.79946e-65
NZ_CP040804.1\|WP_149561198.1\|610071_610653_+\|phosphoribosylanthranilate-isomerase	gnl\|CDD\|234923	PRK01222, PRK01222, phosphoribosylanthranilate isomerase.	3.86961e-83
NZ_CP040804.1\|WP_004183213.1\|618179_618383_+\|copper-chaperone-CopZ	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	2.38567e-13
NZ_CP040804.1\|WP_002891598.1\|610649_611858_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP040804.1\|WP_045001519.1\|615443_615875_+\|CopY/TcrY-family-copper-transport-repressor	gnl\|CDD\|131745	TIGR02698, Uncharacterized_16.5_kDa_protein_in_ptsI_3'region, copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. [Transport and binding proteins, Cations and iron carrying compounds, Regulatory functions, DNA interactions].	3.90253e-54
NZ_CP040804.1\|WP_149561196.1\|608316_609321_+\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	3.16602e-162
NZ_CP040804.1\|WP_013991050.1\|607660_608227_+\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.10249e-109
NZ_CP040804.1\|WP_002891962.1\|613159_613633_+\|IS200/IS605-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.14153e-46
NZ_CP040804.1\|WP_149561201.1\|621214_621973_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.04983e-141
NZ_CP040804.1\|WP_149561202.1\|622015_622870_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270412	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold. This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.06911e-116
NZ_CP040804.1\|WP_149561199.1\|614103_615276_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.81799e-12
NZ_CP040804.1\|WP_149561200.1\|615877_618106_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP040804.1\|WP_118058206.1\|619895_620576_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.54051e-63
NZ_CP040804.1\|WP_049528379.1\|605950_606229_+\|chorismate-mutase	gnl\|CDD\|376623	pfam01817, CM_2, Chorismate mutase type II. Chorismate mutase EC:5.4.99.5 catalyzes the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine.	1.92124e-17
NZ_CP040804.1\|WP_013991045.1\|618521_619568_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	2.40596e-171
NZ_CP040804.1\|WP_149561195.1\|606308_607664_+\|anthranilate-synthase-component-I	gnl\|CDD\|237431	PRK13570, PRK13570, anthranilate synthase component I; Provisional.	0

>NZ_CP040804.1|WP_149561199.1|614103_615276_+|MFS-transporter
MFTNNSRIIFLNRFLSLIIEYGYAIALSIIFSKISVDYVLGLWIAKFLGGILANVGHQFVGKITNKKYVLIGIELLKAVCLALIYLATGSVFVFALVVLTEVLTTYFNSLLSSAVPVLVKKANLQKFNGTYTMIGSASYFLAPMIVGLWGSLDLGSLFLVYSVLTLLATLLLFKLGPIIFDRENESEEEVSSSQGSPIFGRQSVVLKMVMMTILLQSVGVLYDAYEVIFLTKDVGISSQAYSFSLSFLAIAFLATSSILSFKSLTKYSPMTVYLLGSLVYLGYVAVFPFVPNLPTVLLSYIFLAVGQTISGISQNVYLQEKLNPLQLNNLYLKIEVLNQVLTGIVVFVSGMLIKRGLQVTTIYLGYSLPVIILVLGIMLMTKLYQKNLKS
>NZ_CP040804.1|WP_002891962.1|613159_613633_+|IS200/IS605-family-transposase
MRQDNNSLAHTTWNCKYHIVFAPKYRRQIIYGKYKASIGQILRLLCERKGVEIHEAEACPDHIHMLVSIPPKLSISSFMGYLKGKSSLMIFDRHANLKYKYGNRKFWCRGFYVDTVGRNQKRIEEYIRNQLQEDVIADQLSLFEEYDPFTGEKNKRK
>NZ_CP040804.1|WP_070437788.1|611861_612644_+|tryptophan-synthase-subunit-alpha
MTKTLTKHLQAIKDSKRGIFVPYIMAGDHAKGLDGLFETIALLENSGVSAIEVGIPWSDPVADGPVIELAGQRSLAKDVTLTAIIKKLQEQKTQVPLVIMTYINPVYQYGIEAFVKDLAETSVKGLIIPDLPDEHADFITPYLKDSDIALVPLVSLTTGIDRQKQLIDGAEGFIYAVAINGVTGKTGNYRDDLDKHLANLTAHADIPVLTGFGVSTEEDIKRFNAVSDGVIVGSKIVRDLHDGKEEEVAEFVTFGSHFEK
>NZ_CP040804.1|WP_002891598.1|610649_611858_+|tryptophan-synthase-subunit-beta
MTYQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDPSFQAELDDLLKNYVGRETPLYHAKRLTDHIGGAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKKKIIAETGAGQHGVATATAAALFDMDCTIYMGEEDVKRQALNVFRMELLGAKVFSVTDGSRVLKDAVNAALRAWVAGIEDTHYIMGSALGPAPFPEIVRDFQSVIGREAKRQYAEISGGKLPDAVMACIGGGSNAIGMFYPFVNDKSVAMYGAEASGLGLDTEKHAATFAKGRPGILHGALMDVLQDAHGQIMEAFSISAGLDYPGVGPEHCYFNEIGRATYDSITDEEALEGFKLLSRLEGIIPALESSHAIALAQKVAAKMSPDQSLIVCLSGRGDKDVMQVKERFEAEAEGK
>NZ_CP040804.1|WP_149561198.1|610071_610653_+|phosphoribosylanthranilate-isomerase
MTKVKICGLSTPEAVATAVEAGADYIGFVFAKSKRQVSLEQAHELAKGVTGQTKIVGVFVSPSLEELEEAIGKVPLDIVQIHGTFDEDLIPKISVPVIRAIQISDSDSQVKSQADYLLFDAPIAGSGQTFDWQLLADKQIEQDYFIAGGLTVDNVAEVKEIFHPYALDVSSGVETDGSKDLDKIKAFIERVKA
>NZ_CP040804.1|WP_149561197.1|609317_610085_+|indole-3-glycerol-phosphate-synthase-TrpC
MSKAFLPTILEQKEKEVAQLVMEDLQPLRQTYRLYDFLKSNQNKLQIISEVKKASPSMGDINLDVDIVSQAKTYEENGAAMISVLTDEVFFKGDISYLKEISSQVAIPTLAKDFIIDEKQIVRSRNAGATVILLIVAALPEVRLKELYDFATSLGLEVLVETHNLPELEVAHRIGAEIIGVNNRNLVTFETDINTSLELSTHFKDKPVYISESAIFTGQDAALVAPYFNGILVGTALMTAENVAEKVKELQIDKG
>NZ_CP040804.1|WP_149561196.1|608316_609321_+|anthranilate-phosphoribosyltransferase
MKEIFLQISNRQDLSQDQVQAVFDRILKNEVSESQIAAFLMGLKTKGETADEITGIVRALKSHATVLPETFTDAMCNCGTGGDQSYSFNISTTVCFVLAAGGIRMAKAGNRSISSKSGSADVLEALGINVAASPETLSKALDKVGLAFIFAQTMHPAMRFIGPARQALGIPTIMNLVGPLANPLDLETQLMGLYRVELQEIVANAIQQLGRKRAVIITGPDNMDEAALYGTNTYTLLEDGHISQHTFTYEDLGMEKVELSDITGGDAKENAEILLSVLKNEASPYLETTVLNAGLGFFANGKVATIKEGVELARQVIADGSALEKLRQLQEVQV
>NZ_CP040804.1|WP_013991050.1|607660_608227_+|aminodeoxychorismate/anthranilate-synthase-component-II
MILLVDNYDSFTYNLAQYLGTFTEVKVLRNDDETLYEEAEKADGLVFSPGPGWPADAGKMEALIKDFAGKKPMMGICLGHQAIAETFGGKLGLAKNVMHGKQSNITFETPSPIFKDIDNDVPIMRYHSIVVDQMPEGFDVTAITTDDQEIMAIQHKELPIYGLQYHPESIGSPDGLKMVENFVKIVAG
>NZ_CP040804.1|WP_149561195.1|606308_607664_+|anthranilate-synthase-component-I
MRKILPADTLTPILAYMRVQGEHKVILESIPREKENARFSIVAYNPVFEVTFKDGVLYENGKAIDQDPFEYLDQVTVKGIKSDLPFAGGAIGFAGYDMIGLYENIGEIPEDTIGTPDMHFFIYESYLIFDHKKEKVYVVEDNIYSGRDNDAVRQALGQVVTNLQTQAPNEFTPQALQALQFSNHIEKEVFMDMVAKAKKLIREGDMFQCVLSQRFSADFEGDPLDYYRNLRVTNPSNYLYFYDFGDYQVIGASPESLVSVKNGEVVTNPIAGTRPRGTNEEEDAALADELSHDVKETAEHRMLVDLGRNDIGKIAKNGTVKVTKYMEVEYFRYVMHLTSVVKGQLLPELTALDALKSTLPAGTVSGAPKIRAMRRIYELEQEKRGIYAGAIGYLSATGDMDFAIAIRTMILKNQKAYVQAGAGVVYDSVPENEFYETINKAKAMTRIGDAQ
>NZ_CP040804.1|WP_049528379.1|605950_606229_+|chorismate-mutase
MDALSDIRIEIDNIDRQLLRLLAQRQILVEKAGRLKPKGDKVAVQASDRVAQVIANRRKEALELGLSPDVAESVWRSMIKAFIALEEKVNKE
>NZ_CP040804.1|WP_045001519.1|615443_615875_+|CopY/TcrY-family-copper-transport-repressor
MLTISSAEWEVMRVLWAKGQATSSEIIAILAKKLDWSASTVKTLLGRLADKGYLTSQRQGRGFIYQASLGEDEANFQALEAVFDKICSTKHSDLLGQLIEKTPMTQADVDKLQALLLAKEPVDQVVCDCVPGQCACGHHMEVI
>NZ_CP040804.1|WP_149561200.1|615877_618106_+|heavy-metal-translocating-P-type-ATPase
MAKETFVVNGMTCASCVANVENAVNKLDGVDKAVVNLTTEKMSVDYAGDKVSPEAIEKAVADAGYEAEVYNPDTAKSQEEREEDKIHKVRERLIWSSIFTVPLFYLAMGPMVGLPVPNFLSPHHAALTYALVLLVLTVPVMWLGRSFYSNGFRTLAKGHPNMDALVALATSAAFLYSLYGTYHISLGHAHHVHQLYFESVAVILTLITLGKYFETLSKGRTSEAIKKLMHLSAKEATVLRDGKEVKLPVDKVVLGDHIVVKPGEKIAVDGQVISGSSAIDESMLTGESLPIEKSAGKPVFAGSINGQGSLIYEAEKIGKDTLLSQIIKLVEDAQQTKAPIAKIADQVSAVFVPVVMAIALVSGLFWYFIMGQTFTFAMTVAVSVLVIACPCALGLATPTAIMVGTGLGAEHGILYKRGDVLELAHKADVLVFDKTGTITQGKPQLVSSYSYGNSGVALQLLASLEAKSEHPLGQAILVAAENTNLDLLEMDNFSSLTGRGLTASYAGKTYLAGNQTLMAEEKVDLTSAQADFQSLTADGQTPIFLAEDGKLIGLFGVADQVKADSADMVAALHQMGKEVIMLTGDNDQTAQAIAQKVGIKRVISQVLPQEKSRVISDLQAEGKSVIMVGDGINDAPALATADIGIAMGSGTDIAMESADMVLMKPNLMDVVKALKISQATITTIKENLFWAFIYNILSIPVAMGVLHLFGGPLLDPMIAGLAMSFSSVSVVLNALRLKRRKV
>NZ_CP040804.1|WP_004183213.1|618179_618383_+|copper-chaperone-CopZ
MTKTYNITGMKCQGCVNTVTEKLSAVKGVENVKVDLENKQVTIEGKPWKWSLKRALKGTKFELGDEI
>NZ_CP040804.1|WP_013991045.1|618521_619568_+|D-alanine--D-alanine-ligase
MSKQTLILLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMTNDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMDKIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTEDGAIYLNELNTMPGFTQWSMYPLLWENMGLSYSDLIKELVVLGQEMFDKRESHLI
>NZ_CP040804.1|WP_118058206.1|619895_620576_+|amino-acid-ABC-transporter-permease
MDWSIVQQYLPFYQKAFFLTLHIAVLGILGSFLLGLVVSVIRHYRVPILSQLSTVYIELSRNTPLLIQLFFLYFGLPRIGLVLSSEACAVVGLIFLGGSYMAESFRSGLEAVSQTQHEVGLSIGLTPFQVFRYVVLPQAVAVALPSFSANVIFLIKETSVFSAVALADLMYVAKDLIGLYYETDVALGMLVVAYLLMLLPISLVFSWIERRLRYAGFGLSGSSSGE
>NZ_CP040804.1|WP_022496121.1|620535_621213_+|amino-acid-ABC-transporter-permease
MQDSGFQVLLQGNNFLRILQGLGVTIGISIVSVLLSLLLGTLFGIVMTSKSKIIRFLSRIYLEFIRIMPQLVLLFIVYFGLARNFNINISGELSAIIVFTLWGTAEMGDLVRGSITSLPRHQFESGRALGLTNGQLYTYVIIPQVLRRLLPQAINLVTRMIKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILILYFAICYPVSKLSTYLENRWRN
>NZ_CP040804.1|WP_149561201.1|621214_621973_+|ATP-binding-cassette-domain-containing-protein
MTESILQIKDLRKSFGDNEILKGISLDVKQGEVVVILGSSGCGKSTLLRCINGLETIQGGDILLDGKSITGSKKDFHLIRQKIGMVFQSYDLFPHLDILQNLILGPVKAQGRNKEEVIAEAEKLLNRVGLLDKKHSFARQLSGGQKQRVAIVRSLLMHPEVILFDEVTASLDPEMVREVLELINDLAQEGRTMLIVTHELQFARAIADRIIFMDKGVIAEEGTAEEFFNHPKTQRAQEFLNIFDFSKFGAYL
>NZ_CP040804.1|WP_149561202.1|622015_622870_+|transporter-substrate-binding-domain-containing-protein
MKLTKKIFALLALVFALVAVTACSSDSSSGKSIAKARTIEEIKKSGELRIAVFADKKPFGYVDNKGAYQGYDIELGNRLAKDLGVKPKYVSVDAANRAEFLISNKVDITLANFTVTDERKKQVDFALPYMKVSIGVVSPKDKVIKDVKELEGKTLIVTKGTTAETYFEKNYPNIKLQKYDQYSDAYQALLDGRGDAFSTDNTEVLAWALENKGYEVGITSLGNPDTIAPAVQKGNKELLDFINKDIKKLGEENFFHKDYEKTLHPTYGDAAKADDLVVEGGEVK
>NZ_CP040804.1|WP_045769091.1|622970_623672_-|hypothetical-protein
MRHQKKKKYSDQQEINSKDHSQNEYRRTQKYKTGWRARWDKFTDRLANIFEICFLLMIPIFIVYMIFFDDGVYKDGIYGLWQSENHKLAISYNEGGRSRKYDWEIVQDGKLLIKNARTQKIKGLKDGTIYIEVYAKESLFSDLPTKNGSNYLNMYVRKDHYLTYNGESYKRIDDRDKTITWKDGSTSVYGERKTFFDYIDAFLSWGIVGAAFLPIIVIGWRNIKNKKVRKKSA
>NZ_CP040804.1|WP_149561203.1|623643_624369_-|hypothetical-protein
MRHQSKRKYADRKKLNRKYHSQKAYRKEQKRKTGWRARWDKFTDRLANIFGICFLLMIPVFIVYMIFFNDGVYKDGIYGLWQSENHKLAISYERGRKESKRDWDIVQDGNVLIKDARVDDIKRLEDGTLYIEVYAEESLFSDLPTKNGYNYLNMYVRKDNYLTYDGESYKRIDDENKSITWNDGSKSLYGQRITLFDRLKPYIVFGIIGSMILYAIFVDWRIKRNLKRKNRLNEASKKEKI

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Crispr_ID: NZ_CP040804_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040804_2

906570-907659

TypeII

Consensus_repeat	Method
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CRISPRCasFinder
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACN	CRT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	PILER-CR

16 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP040804_2

>merge|NZ_CP040804|2|906570-907659|CRISPRCasFinder,CRT,PILER-CR
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTCTTACCACCGTCTCCCATGATGACTGATTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGTCGATTTGATAGTTTAATTAAAGCTGATGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTCTAACAAAGACAATTACGACATCATGCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTGACAGCATCCCTTCCATTTGAATTGCCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCGAATTGATGCCATTGATTCGCTCCTCCGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTTTCTACAAGTTTAGCAGTTCAACGTGACTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGGCCGGAGCTGACATTTATTTGCTAGTTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAATACCGTTACCATCAATAGCCATTTCGTAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAAGGTGGAGTTGAAATCACTCGTGATACTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATTATTTATCCCCACGTAGCCATTTCACCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGAGCAAGCACGCTACTTCGACATCATTCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAAGCCGAATTGTACGGTGACAGAATTTTGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTACGCTCTTGTTCACCCTTGTCTCTGTTACGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAAAAGGCTCGGTGGTGGAAGTGGACATGTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGATAGGTACTAGACATGCCAAAGTATTCATGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGAGCAGTTTTGGACGGAAAGCACAACCCCTTTTTTGTACTTTAAGATTTAAGTGACTGTACAGTT

>NZ_CP040804|2|2|906570-907658|CRISPRCasFinder
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TCTTACCACCGTCTCCCATGATGACTGATTG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GTCGATTTGATAGTTTAATTAAAGCTGATG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTCTAACAAAGACAATTACGACATCATGC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGACAGCATCCCTTCCATTTGAATTGCCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGAATTGATGCCATTGATTCGCTCCTCCGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTACAAGTTTAGCAGTTCAACGTGACT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TGGCCGGAGCTGACATTTATTTGCTAGTTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AATACCGTTACCATCAATAGCCATTTCGTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGGTGGAGTTGAAATCACTCGTGATACTG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	ATTATTTATCCCCACGTAGCCATTTCACCA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GAGCAAGCACGCTACTTCGACATCATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGCCGAATTGTACGGTGACAGAATTTTGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TACGCTCTTGTTCACCCTTGTCTCTGTTAC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAAAGGCTCGGTGGTGGAAGTGGACATGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GATAGGTACTAGACATGCCAAAGTATTCAT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TGAGCAGTTTTGGACGGAAAGCACAACCC
CTTTTTTGTACTTTAAGATTTAAGTGACTGTACAGT

>NZ_CP040804|2|1|906570-907659|CRT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TCTTACCACCGTCTCCCATGATGACTGATTG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GTCGATTTGATAGTTTAATTAAAGCTGATG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTCTAACAAAGACAATTACGACATCATGC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGACAGCATCCCTTCCATTTGAATTGCCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGAATTGATGCCATTGATTCGCTCCTCCGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTACAAGTTTAGCAGTTCAACGTGACT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TGGCCGGAGCTGACATTTATTTGCTAGTTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AATACCGTTACCATCAATAGCCATTTCGTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGGTGGAGTTGAAATCACTCGTGATACTG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	ATTATTTATCCCCACGTAGCCATTTCACCA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GAGCAAGCACGCTACTTCGACATCATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGCCGAATTGTACGGTGACAGAATTTTGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TACGCTCTTGTTCACCCTTGTCTCTGTTAC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAAAGGCTCGGTGGTGGAAGTGGACATGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GATAGGTACTAGACATGCCAAAGTATTCAT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TGAGCAGTTTTGGACGGAAAGCACAACCCC
TTTTTTGTACTTTAAGATTTAAGTGACTGTACAGTT

>NZ_CP040804|2|1|906637-907593|PILER-CR
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GTCGATTTGATAGTTTAATTAAAGCTGATG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTCTAACAAAGACAATTACGACATCATGC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTGACAGCATCCCTTCCATTTGAATTGCCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	CGAATTGATGCCATTGATTCGCTCCTCCGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TTTCTACAAGTTTAGCAGTTCAACGTGACT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TGGCCGGAGCTGACATTTATTTGCTAGTTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AATACCGTTACCATCAATAGCCATTTCGTA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGGTGGAGTTGAAATCACTCGTGATACTG
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	ATTATTTATCCCCACGTAGCCATTTCACCA
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GAGCAAGCACGCTACTTCGACATCATTCT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAGCCGAATTGTACGGTGACAGAATTTTGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	TACGCTCTTGTTCACCCTTGTCTCTGTTAC
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	AAAAGGCTCGGTGGTGGAAGTGGACATGT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	GATAGGTACTAGACATGCCAAAGTATTCAT
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040804.1\|WP_061652218.1\|897954_898569_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378302
NZ_CP040804.1\|WP_045768915.1\|909725_911858_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP040804.1\|WP_073686986.1\|895712_896090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040804.1\|WP_149561250.1\|898816_900478_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|183265
NZ_CP040804.1\|WP_084871438.1\|900624_904044_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP040804.1\|WP_003093491.1\|907703_908519_-\|TIGR03943-family-protein	unknown	unknown	gnl\|CDD\|226214
NZ_CP040804.1\|WP_073686985.1\|896579_897191_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP040804.1\|WP_002885965.1\|914586_914985_+\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109
NZ_CP040804.1\|WP_037611483.1\|912741_913671_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP040804.1\|WP_049528653.1\|908518_909421_-\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP040804.1\|WP_149561251.1\|914997_915438_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP040804.1\|WP_002886140.1\|915491_915788_-\|DUF3270-domain-containing-protein	unknown	unknown	gnl\|CDD\|371663
NZ_CP040804.1\|WP_073686987.1\|895337_895700_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP040804.1\|WP_049528648.1\|905453_906506_+\|hypothetical-protein	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
NZ_CP040804.1\|WP_002885986.1\|912350_912614_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|224894
NZ_CP040804.1\|WP_014633341.1\|897217_897859_+\|lipase	unknown	unknown	gnl\|CDD\|238879
NZ_CP040804.1\|WP_049528643.1\|904220_905132_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP040804.1\|WP_014633335.1\|911844_912285_+\|SprT-family-protein	unknown	unknown	gnl\|CDD\|235290
NZ_CP040804.1\|WP_045768914.1\|913670_914462_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP040804.1\|WP_002946754.1\|905133_905457_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
NZ_CP040804.1\|WP_061652218.1\|897954_898569_+\|hypothetical-protein	gnl\|CDD\|378302	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function.	0.000272037
NZ_CP040804.1\|WP_045768915.1\|909725_911858_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP040804.1\|WP_002885965.1\|914586_914985_+\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	3.30131e-33
NZ_CP040804.1\|WP_149561250.1\|898816_900478_+\|STAS-domain-containing-protein	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	7.13096e-180
NZ_CP040804.1\|WP_084871438.1\|900624_904044_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	0
NZ_CP040804.1\|WP_049528653.1\|908518_909421_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	1.62683e-77
NZ_CP040804.1\|WP_073686985.1\|896579_897191_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	6.30431e-10
NZ_CP040804.1\|WP_037611483.1\|912741_913671_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.81624e-168
NZ_CP040804.1\|WP_003093491.1\|907703_908519_-\|TIGR03943-family-protein	gnl\|CDD\|226214	COG3689, COG3689, Predicted membrane protein [Function unknown].	7.03173e-106
NZ_CP040804.1\|WP_149561251.1\|914997_915438_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.87496e-08
NZ_CP040804.1\|WP_002886140.1\|915491_915788_-\|DUF3270-domain-containing-protein	gnl\|CDD\|371663	pfam11674, DUF3270, Protein of unknown function (DUF3270). This family of proteins with unknown function appears to be restricted to Streptococcus.	2.8798e-27
NZ_CP040804.1\|WP_073686987.1\|895337_895700_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	2.58836e-63
NZ_CP040804.1\|WP_049528648.1\|905453_906506_+\|hypothetical-protein	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.34795e-129
NZ_CP040804.1\|WP_002885986.1\|912350_912614_+\|PspC-domain-containing-protein	gnl\|CDD\|224894	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms].	4.4796e-18
NZ_CP040804.1\|WP_014633341.1\|897217_897859_+\|lipase	gnl\|CDD\|238879	cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.	1.12445e-34
NZ_CP040804.1\|WP_049528643.1\|904220_905132_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	8.75515e-136
NZ_CP040804.1\|WP_014633335.1\|911844_912285_+\|SprT-family-protein	gnl\|CDD\|235290	PRK04351, PRK04351, SprT family protein.	1.4265e-85
NZ_CP040804.1\|WP_045768914.1\|913670_914462_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	9.87895e-99
NZ_CP040804.1\|WP_002946754.1\|905133_905457_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.0368e-27

>NZ_CP040804.1|WP_049528648.1|905453_906506_+|hypothetical-protein
MKFFVQHPYKERIELNIGAITQIVGQNKELKYYIWQILSWYFGGKKYSSDDLSIFDYEEPTILDESGEIVKRSSYHYIEISSFKDLLEQMEYKKGTLAHGYLGKIVNQVDIVAHLEKINEQVELIEGAMNQHINLNSGKVEYHLENRSLTLDQLLSKNFSPFFAIENKNLSFEWVSNTDKLSLFLEMLDRLLSQTTEKYLIVLKNIDSFISEESYDSFYKQIGQLVKKYPNLNLILFPSNQGYLKIDEENSRFVNILSDQVEHLYDIEFMYDRVKKHYPSNNFPPREGFRKSLENVTPYLLTKMLRQPSLTLVDSVILNILNQLFQFNYRIRYSQTPDEELLHRYLESKN
>NZ_CP040804.1|WP_002946754.1|905133_905457_+|CRISPR-associated-endonuclease-Cas2
MRYEALRLLCFFDLPMESKDEKRIYRNFRKELISNGFEMLQFSVYYRTCPNRSFANKFYKKLKMSNLPAGNVRLLAVTEKQFSEMTLIIGGKTKQEEIVSDNKLVVI
>NZ_CP040804.1|WP_049528643.1|904220_905132_+|type-II-CRISPR-associated-endonuclease-Cas1
MTWRVVHVSQSEKMRLKLDNLLVQKMGQEFTVPLSDISIIVAEGGDTVVTLRLLSALSKYNIALVVCDNEHLPTGIYHSQNGHFRAYKRLKEQMDWSQKQKDKAWQIVTYYKINNQEDVLAMFEKSLDNIRLLSDYKEQIEPGDRTNREGHAAKVYFNELFGKQFVRVTQQEADVINAGLNYGYAIMRAQMARIVAGYGLNGLLGIFHKNEYNQFNLVDDLMEPFRQIVDVWVYDNLRDQEFLKYEYRLGLTDLLNAKIKYGKETCSVTVAMDKYVKGFIKYISEKDSSKFHCPVVSSLEWRK
>NZ_CP040804.1|WP_084871438.1|900624_904044_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MSDLVLGLDIGIGSVGVGILNKVTGEIIHKNSRIFPAAQAENNVERRTNRQGRRLTRRKKHRRVRLNHLFEESGLITDFTQVSINLNPYQLRVKGLTDELSNEELFIALKNMVKHRGISYLDDASDDGNSSVGDYAQIVKENSKQLETKTPGQIQLERYQKYGQLRGDFTIEEDGKKHRLINVFPTSAYRAEALRILQTQQEFNPQITDEFINSYLQILTGKRKYYHGPGNEKSRTDYGRYTTKKDSEDEYLTLDNIFGILIGKCTFYPEEYRAAKASYTAQEFNLLNDLNNLTVPTETKKLSEEQKNKIITYVKNEKAMGPAKLFKYIAKLLSCDVADIKGYRIDKSDKAEIHTFEAYRKMKTLETIDIEQMEREKLDKLAYVLTLNTEKEGIQEALEHEFADGTFSQKQVDELVQFRKANSSIFGKGWHNFSVKLMMELIPELYATSEEQMTILTRLGKQKTTSSSNKTKYIDEKRLTEEIYNPVVAKSVRQAIKIVNAAIKEYSDFDNIVIEMARETNEDDEKKAIQKIQKANKDEKDAAMLKAANQYNGKAELPHSVFHGHKQLATKIRLWHQQGERCLYTGKTISIHDLINNPNQFEIDHILPLSITFDDSLANKVLVYATANQEKGQRTPYQALDSMDDAWSFRELKAFVRESKTLSNKKKEYLLTEEDISKFDVRKKFIERNLVDTRYASRVVLNALQEHFRTRKIDTKVSVVRGQFTSQLRRHWGIDKIRDTYHHHAVDALIIAASSQLNLWKKQKNTLVSYSEDQLLDIETGELISDDEYKESVFKAPYQHFVDTLKSKDFEDSILFSYQVDSKFNRKISDATIYATRKAKLDKEKKEYTYTLGKIKDIYALGTKTPSKTGFYKFLDLYKKDKSQFLMYQKDRKTWDEVIEKILEQYRPFKEKDKNGKEVDFNPFEKYRIENGPIRKYSRKGNGPEIKSLKYYDNLLGRFVDITPSESKNPVALLSLNPWRTDVYYNTETRKYEFLGLKYADLCFEKGGSYGISKVKYNKIREKEGIGKNSEFKFTLYKNDLILIKDTETNRQQIFRFWSRTGKDNPKSFEKHKIELKPYEKARFEKGEELEVLGKVPPSSNQLQKNMQIENLSIYKVRTDVLGNQHIIKNEGDKPKLDF
>NZ_CP040804.1|WP_149561250.1|898816_900478_+|STAS-domain-containing-protein
MDALKYITPKFFTTIKDYSKGQFIKDLVAGVIVAIIALPLSIALAIASGVNPEQGLYTAVVAGFFISFLGGSRVQIGGPTAAFVVIIYGIIAQYGMAGLTVATLMAGLMLIIMGLLRFGDLIKFIPKTITLGFTLGIAVGIVAGQIKDFLGLEMKSVPAEFLEKMIAYGKHLSSISWATLAIGILALLIQIFWPRLSQKIPGSLVAIFVTTAIVAFGHLPVKTIGDLYTIKAGLPSFTVPDLSFSLIRQMISPAFTIAILAAIESLLSCVVSDGMIGGNHRSNAELVGQGVGNIMSALFGGIPATGAIARTAANVKNGGRTPVAGMVHAFTLLLILLFLMPYASLIPMTCLASILMIVGYNMSGWRTVGRMIKRAPKSDVAVLLVTFVLTVFFDLVVAIEFGMVLAAFLFLKRMSDVAQIRQWVDKENLDDPVLSEDSDLKQVTKNTVVYEVFGALFFGAANNFLNVINDETKNVLILRMRNVPAMDISGLDALEETLAICQKRGMTLLLSHVNAQPYRVLEKSGFIQTIGADHICESTDQALEKAAALAKEA
>NZ_CP040804.1|WP_061652218.1|897954_898569_+|hypothetical-protein
MWKWFKRLIVLVIVLFFAVAALLIPDKIDSQDQLKNVSTQTSLADLAQAGIGGASLSSGGVSTEINLDSNQFRQILKASMADSNDETLLNSTVELNDSYLTAKLPVSLGPIESTFSLDFTVSTNKEVILLDLAGAHLGRLPVPKSLVLPYLKKSIAQSSSGVRMVNNQIQLKLPEIGYEIEQATVTNSKMKVKLNIPISLPTSW
>NZ_CP040804.1|WP_014633341.1|897217_897859_+|lipase
MDELKEIKLKNYQYLNEVAIKGETLFTGSSLMELFPICEIARSRGVDDIIYNRGISSLNTDEFLQHIHPLLLDLQPSKVFINIGTNDMTEEPYGDQWFHHMTANIRQILEQTQAVLPHTKIYLMSFYPANLHLPWQTKASIQWMKLRTPENLDRCNQALEEIAQTHGCHFINCNAGLVNDRKEQKAEHTYDGVHLYANAYLKVFEALEPYLLN
>NZ_CP040804.1|WP_073686985.1|896579_897191_+|CPBP-family-intramembrane-metalloprotease
MTLFMSKLMSGIVELLIVSVIPFITWLIWSRKKVGFFDWIGLKKVESQQKRRLLLTILGISLLFLLFSIVVFAWFDSSQTATAAFSGKGIGALPAILAYAILATALPEEIFFRGFLLKRLQGKLGFLGANLLQSLLFGLIHAFMFIQLTGYLKAIVIMVFISLIAYVFGAINEKKASGSILPSVFIHALANTVVGLLFAFSFI
>NZ_CP040804.1|WP_073686986.1|895712_896090_+|hypothetical-protein
MHLFKWLVPKKKAVEGLVMRISTADQVDYATITDPSDSDIWDALVQLPASYDSLYLTYGDKRSTSFIFVEYEDDKYRLEHDTPELGLDLTNVARVSQQVARDILIRFSKEHTVILDDHWKQEKVR
>NZ_CP040804.1|WP_073686987.1|895337_895700_+|hypothetical-protein
MRLWHQELIAKLPRQQLLGQHRECCALRGKGWQRKHATVNYVFDYSPYRLFKYHELIMQEMTKRGYRVSPEWLDKEYRGKQMPAYDKLEVVELPAIIYPEHDTTYLQECLDNLKQKGIII
>NZ_CP040804.1|WP_003093491.1|907703_908519_-|TIGR03943-family-protein
MLRFLILSGYFELVMYLQVSGKLNQYINIHYSYLAYISMVLSFILAVVQLIVWMKQMKVHSHLSGRVAKVASIVLLAFPVLTGLLVPTVTLDANTVSAKGYHFPLAAGSDPNQADQEGTTIQYLKPDTSSYFTSSAYEKEMTRELAKYKGRETIQITTENYMEVMELIYLYPNDFVGKKVTYTGFVYNDPQTKGYQFIFRFGIIHCIADSGVYGLATTGSDQTFKDNTWVKVTGTITVDYYQNLKQSLPILNLTEVKEVGQPDNPYVYRVF
>NZ_CP040804.1|WP_049528653.1|908518_909421_-|permease
MAIFHQLPDSVLQLLAVFLSIIIEALPFVLLGSILSGFIEVFVTPEKVQNFLPKNKVLAILFGTLIGFIFPSCECGIVPIITRFLEKKVPSYTAIPFMATAPIINPVVLFATYTAFGNSWYYVLLRFVGAFLIAMILGILLGFVVDDQILKDNRKVSHVHDYSGLSAGKKTFQALVHAVDEFFDTGRYLIFGSLVAASMQTYLPTRILTTIGHNSVTAILIMMLLAFILSLCSEADAFIGASLLSSFGVAPTVAFLIIGPMVDIKNLIMMKHQFKTRFVGLFVGTASLATIIYCLVLGVI
>NZ_CP040804.1|WP_045768915.1|909725_911858_+|RNA-binding-transcriptional-accessory-protein
MENRNLETLAQELGLKKQQVETVLELTAEGNTIPFIARYRKEKTGNLDETQIKAIIDMDKSLTALQDRKETVLSKIEAQGKLTDQLKAAIEAAEKLADVEELYLPYKEKRRTKATVAREAGLFPLARLILQNSPNLKAEAEKLTSEAFPTADKALAGAVDILVEAFSEDNSLRSWTYNEIWNNSDITSTLKDQSLDEKETFKIYYDFEDKVSKLQGYRTLALNRGEKLGVIKVAFKHNLEKMHRFYSARFKQKNDYIEEVINQSLKKKIIPAMERRIRSELTEAAEDGAIQLFSQNLRSLLLVSPLKGKMVLGFDPAFRTGAKLAVVDQTGKLITTQVIYPVAPASQAKIAQAKKDLADLIKKHAIEIIAIGNGTASRESEAFVAEVLKDFPETSYVIVNESGASVYSASELARHEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSENLDFVVDTVVNQVGVNVNTASSTLLSHVSGLNKTISENIVAYREENGEIASRAEIKKVPRLGAKAFEQAAGFLRIPNAKNILDNTGVHPESYPAVKALFKQLAITDLDDSAKTKLKAINLKETAEELGLGQETLKDIIADLLKPGRDLRDDFEAPVLRQDVLELKDLSVGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDLVTVWVSKVDLEHEKLNLSLVNPRESN
>NZ_CP040804.1|WP_014633335.1|911844_912285_+|SprT-family-protein
MNLTDYVKTVSIEDFGWEFKHQALWNKRLRTTGGRFFPKDGHLDFNPKLYEEHGLETFRKIVRHELCHYHLYFQGKGYKHADRDFKDLLAKVDGLRYAPKIQGQEENYYLYQCQSCGHTYRRKRRVNTRKFGCGLCRGKLIFLNQS
>NZ_CP040804.1|WP_002885986.1|912350_912614_+|PspC-domain-containing-protein
MSNRFYKTRKNRLVAGVVAGLADKFGWDLALARILAIILMVSTQFGIFLYLVLAFLLPYKEDIYPEIKLKDGRKRKNAEPVEDEWNW
>NZ_CP040804.1|WP_037611483.1|912741_913671_+|HPr-kinase/phosphorylase
MTVTVKMLVDRLKLKVVYGNKELLAKPITTADISRPGLEMTGYFDYYSPERIQLVGMKEWSYLKTLTDHNRYSVFKNMFKEETPAVIVARGLDIPEELYRAAKENGVVVLQGRNGTSSLSGDMSWYLNAQLAERTSVHGVLVDIYGMGVLIQGDSGIGKSETGLELVKRGHRLVADDRVDVYAKDEETLWGEPAEILRHLLEIRGVGIIDVMSLYGASAVRNSSQVQLAIYLENFEDGKVFDRLGNGNEEIELQGVKIPRVRIPVKTGRNVSVVIEAAAMNYRAKQMGFDATKTFEERLTNLISKNGED
>NZ_CP040804.1|WP_045768914.1|913670_914462_+|prolipoprotein-diacylglyceryl-transferase
MFATIDPIALRLGPISIHWYAICIVSGLLLAVYLAQRWAPEKGIDPENILDFILLAFPMAIVGARLYYVIFQWSYYSQNPSEIFAIWNGGIAIYGGLIVGAAVLYWFAKRHAIAVLDFLDIAAPGVMIAQSIGRWGNFINQEAYGKAVSHLNYVPEFIRQQMYIDGSYRVPTFLYESLWNLVGFIIILGLRRFNKKLRQGDVTSFYLIWYGLGRFVIEGMRTDSLMFVGLRVSQWVSIAIIILGATLLYLRKQRPEADYKMKN
>NZ_CP040804.1|WP_002885965.1|914586_914985_+|DUF948-domain-containing-protein
MAEIAFLIIAIALAAFLIALIPTLLRTRHVVKEVEETVAVLRTDINVTLHQTNEILAKANVLVEDVNEKVQTIDPLFVAVAELSESVSDLNTEARYLGAKASAAGASVGKAGSAFAIGKVASKLFGKKDKKK
>NZ_CP040804.1|WP_149561251.1|914997_915438_+|YtxH-domain-containing-protein
MSKFLNTLIIGVASGAAAAYFFTTEKGKAVKARIDEEIASFKEDPKAYQNQVVEKASDYKDLAVDTFQDYKTKFENGDITADDLTKAVQEKTAQVADFAQESFELIKEKTAQVTPEQADVEAETKAIVDDIVIDIKDISEEAAEAK
>NZ_CP040804.1|WP_002886140.1|915491_915788_-|DUF3270-domain-containing-protein
MADNLHRQFDHIEDFETERPQTTNYQDYQGLNSNSIKLQDMIFFGRISSFCVSTVLVAFLFLVAQVATFWAFFWAITISVIGQIGIYVLIEYYKAQKR

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Crispr_ID: NZ_CP040804_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040804_3

1109749-1109820

Orphan

Consensus_repeat	Method
GTCCAGTGGACCTTTTTAGGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040804_3

>merge|NZ_CP040804|3|1109749-1109820|CRISPRCasFinder
GTCCAGTGGACCTTTTTAGGTCCGAGCCAAGAAACCCAAAAGCGAGGCTGTTCAGTGGACCTTTTTAGGTCC

>NZ_CP040804|3|3|1109749-1109820|CRISPRCasFinder
GTCCAGTGGACCTTTTTAGGTCC	GAGCCAAGAAACCCAAAAGCGAGGCT
GTTCAGTGGACCTTTTTAGGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040804.1\|WP_149561297.1\|1121308_1121545_+\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|131380
NZ_CP040804.1\|WP_118185549.1\|1105185_1105365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040804.1\|WP_045769137.1\|1121612_1122884_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP040804.1\|WP_064520658.1\|1100930_1101215_+\|chorismate-mutase	unknown	unknown	gnl\|CDD\|168880
NZ_CP040804.1\|WP_013990697.1\|1107582_1108092_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP040804.1\|WP_013990695.1\|1110133_1111072_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor	unknown	unknown	gnl\|CDD\|237010
NZ_CP040804.1\|WP_013990694.1\|1111351_1112545_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP040804.1\|WP_013990698.1\|1106646_1107558_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP040804.1\|WP_002883489.1\|1102565_1102913_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP040804.1\|WP_070578567.1\|1117631_1118420_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040804.1\|WP_149561294.1\|1104850_1105195_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286689
NZ_CP040804.1\|WP_002883500.1\|1109961_1110147_+\|DUF3272-family-protein	unknown	unknown	gnl\|CDD\|314526
NZ_CP040804.1\|WP_013990699.1\|1105880_1106021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040804.1\|WP_149561295.1\|1108091_1109744_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP040804.1\|WP_014633211.1\|1118564_1119875_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133045
NZ_CP040804.1\|WP_149561296.1\|1112690_1113677_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP040804.1\|WP_013990687.1\|1119883_1120987_+\|endoglucanase	unknown	unknown	gnl\|CDD\|366548
NZ_CP040804.1\|WP_045772069.1\|1116477_1117629_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_CP040804.1\|WP_149561293.1\|1101211_1102435_+\|voltage-gated-chloride-channel-family-protein	unknown	unknown	gnl\|CDD\|239654
NZ_CP040804.1\|WP_003092510.1\|1106394_1106571_-\|DUF3042-family-protein	unknown	unknown	gnl\|CDD\|371431

Protein	Function_ID	Function_description	E-value
NZ_CP040804.1\|WP_149561297.1\|1121308_1121545_+\|DUF1146-domain-containing-protein	gnl\|CDD\|131380	TIGR02327, conserved_hypothetical_protein, conserved hypothetical integral membrane protein. Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the Firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes ywzB from Bacillus subtilis; pfam06612 describes the same family as Protein of unknown function DUF1146.	2.20331e-07
NZ_CP040804.1\|WP_045769137.1\|1121612_1122884_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP040804.1\|WP_064520658.1\|1100930_1101215_+\|chorismate-mutase	gnl\|CDD\|168880	PRK07248, PRK07248, chorismate mutase.	5.07737e-39
NZ_CP040804.1\|WP_013990694.1\|1111351_1112545_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP040804.1\|WP_013990695.1\|1110133_1111072_-\|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	2.02309e-131
NZ_CP040804.1\|WP_013990697.1\|1107582_1108092_+\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	1.04341e-72
NZ_CP040804.1\|WP_013990698.1\|1106646_1107558_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.89277e-134
NZ_CP040804.1\|WP_002883489.1\|1102565_1102913_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	6.42285e-69
NZ_CP040804.1\|WP_014633211.1\|1118564_1119875_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133045	cd06423, CESA_like, CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan.	1.32005e-53
NZ_CP040804.1\|WP_149561294.1\|1104850_1105195_+\|hypothetical-protein	gnl\|CDD\|286689	pfam09639, YjcQ, YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	7.78288e-17
NZ_CP040804.1\|WP_002883500.1\|1109961_1110147_+\|DUF3272-family-protein	gnl\|CDD\|314526	pfam11676, DUF3272, Protein of unknown function (DUF3272). This family of proteins with unknown function appears to be restricted to Streptococcus.	9.03935e-09
NZ_CP040804.1\|WP_045772069.1\|1116477_1117629_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	1.29614e-173
NZ_CP040804.1\|WP_149561295.1\|1108091_1109744_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP040804.1\|WP_149561296.1\|1112690_1113677_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.36992e-89
NZ_CP040804.1\|WP_013990687.1\|1119883_1120987_+\|endoglucanase	gnl\|CDD\|366548	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8.	2.46372e-19
NZ_CP040804.1\|WP_149561293.1\|1101211_1102435_+\|voltage-gated-chloride-channel-family-protein	gnl\|CDD\|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	9.47693e-173
NZ_CP040804.1\|WP_003092510.1\|1106394_1106571_-\|DUF3042-family-protein	gnl\|CDD\|371431	pfam11240, DUF3042, Protein of unknown function (DUF3042). This family of proteins with unknown function appears to be restricted to Firmicutes.	4.05312e-16

>NZ_CP040804.1|WP_149561295.1|1108091_1109744_+|DNA-polymerase-III-subunit-gamma/tau
MYQALYRKYRSQTFGEMVGQKVISTTLRQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKQGAIKEHLASILEKEGLTFDDEALTIIARRAEGGMRDALSILDQALSLSPDNHVSQAVAEEITGSIGLTALDSFVANVRNQETTQALSNLETLFDNGKSMSRFATDLLEYFRDLLIVKAGGENSHHSPLFEENLSLEQDRLFQLIDLVTSALPEIKTGTHPKIYAEMLTIKLSETHTQASQEIPGNLQEELDSLRREVEGLRKALKEGKAQGEVAPTRKAKPAYQYKVDREKILTIMRETMENPQKSRQCLDALKTTWPEILDSISPQNRALLNGSEPVLANQENAILAFNAAFNAEQVMKRSDLNDMFGNIMSSAAGFSPNIMAVPKAEFEKLRTEFARSLKSKEELEKEDREEYIPQELDFLSDVVEIED
>NZ_CP040804.1|WP_013990697.1|1107582_1108092_+|GAF-domain-containing-protein
MVVMTNEEKKSAYELMLAQAKVLFANEDNAMANFSNASALLNTTLPNSVFTGFYLMDNVKNELILGPFQGNVSCVRIALGKGVCGQSAAENRTLIVEDVTKHANYIACDSAARSEIVVPMVKDGKLVGVLDLDSHQVGDYNDVDQDYLEAFIKILLEKTELTFGMFEVN
>NZ_CP040804.1|WP_013990698.1|1106646_1107558_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MKTKLIVVAGPTAVGKTALGIELAKRFNGEIISGDSQQVYRQLNIGTAKATPEEQAAAVHHLIDVRDVDESYSAYDFVIEAEVAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVDQEQVLAYRSELEQLSDQELFEKIDRLGIEIKEINRRRAIRALELHRFSENLENTETTYDPFLIGLDDKRSLIYDRINTRVDKMVEHGLLEEAMWLYENYPNAQSARGIGYKELFPYFAGNQSLDEALEKLKQNTRRFAKRQLTWFRNRMTVKFYQISSPEYPKNVVQDLELFLNEREGEKVGQS
>NZ_CP040804.1|WP_003092510.1|1106394_1106571_-|DUF3042-family-protein
MAKKHSFAKGLATGVLGTAATVAGAVFAVKKTIIEPEEKKLAFIEENRKKAARRRVSR
>NZ_CP040804.1|WP_013990699.1|1105880_1106021_+|hypothetical-protein
MPNGSLGSTVFGTTPEESDLQSGNTPEAEVEVVDQGFAITTTKTID
>NZ_CP040804.1|WP_118185549.1|1105185_1105365_+|hypothetical-protein
MEMMSRPSKEVLVFSKNIRKWIIGDKTISGKKQFIFKEDTPQDVLDLFQEIKPKLDFAY
>NZ_CP040804.1|WP_149561294.1|1104850_1105195_+|hypothetical-protein
MAKDDYFVILYEIMKYLYSCLKQGKNVEVDQLTAEYFEIPERYWKYIMYNLINDGYVTGAFARKTKSGIAIIDLDSIQITPQGIQYYFDNNFLQSEDSVDPLLINKIKEVFKWK
>NZ_CP040804.1|WP_002883489.1|1102565_1102913_+|50S-ribosomal-protein-L19
MNPLIQSLTEGQLRTDIPSFRPGDTVRVHAKVVEGTRERIQIFEGVVISRKGQGISEMYTVRKISSGIGVERTFPIHTPRVEKIEVVRYGKVRRAKLYYLRALQGKAARIKEIRK
>NZ_CP040804.1|WP_149561293.1|1101211_1102435_+|voltage-gated-chloride-channel-family-protein
MKVRQLSDSQGLSYLHLVMLSLYAILLGVLVGLIDAVFGRVLIGLSEFRDHHLFYLVPALPLAGLLIVYLYQKFAGKAAQGMGLIFKVGHNEEDQVPLRLIPLVTVTTWLTHLFGGSAGREGVAVQLGATVSHAFSRYFKLPNASRIFLTMGMAAGFGGLFQTPIAATFFALEVLTLGQLSLPILVPTLIASFVASTTSHLLGLEKFSHFVSESLTIDLGTFMKLALLGLAFGIAGNLFAYLLSLAKKKVASLLPNPYYRVLLGSVVLTCLLLILWKGRYTGLGTNLIALSVGGGTIYPLDWLLKLLLTVFTLSLGFQGGEVTPLFAIGASLGAVLAPVLGLPIPLVAGLGYLSVFGSSTNTLLAPIFIGVEVFGPANALPYAIVMAFAYLINHKTSIYGQQKMLEM
>NZ_CP040804.1|WP_064520658.1|1100930_1101215_+|chorismate-mutase
MDLNEIRQQIDTVNNEIVALLEERMKLVTRVSAYKQRTGKAIYDPEREQALLDKVGASVLNPEYKEAIVASFADIMKRSRIYQASKLEKSRYLE
>NZ_CP040804.1|WP_002883500.1|1109961_1110147_+|DUF3272-family-protein
MIQQILFITLETIFETVCFNYSLQHGYYFFTAFFGYLLFRRLWTTYVVSRIARAADKSTKK
>NZ_CP040804.1|WP_013990695.1|1110133_1111072_-|bifunctional-biotin--[acetyl-CoA-carboxylase]-synthetase/biotin-operon-repressor
MKTYEHVYDILSKSPDFVTGESLAKSLGVSRTAIWKAIQTLQEQGIDITSVRKKGYYLEKGDILLPQDISKQLNIPVYFNPDSNSTQLDAKHGMEKNNPTPALYLASSQKAAKGRFERHFFASPQGGIYMSIHLKPNCHFEELPPYTMMAAAAIVKAIQRLTGINTEIKWVNDIYLNNKKMAGILTEAISSIESGRITDVIIGVGLNFSISDFPEELANKATSLFTSEKPSITRNQLISEIWRLFLTIPTSDLVKVYKEKSLVLDKQVTFEQAGKTYTGVAKEIGDKGQLLVLTDDGREKWLTAGEVSLTSW
>NZ_CP040804.1|WP_013990694.1|1111351_1112545_+|methionine-adenosyltransferase
MSERKLFTSESVSEGHPDKIADQISDAILDAILAEDPDAHVAAETAVYTGSVHVFGEVSTTAYVDINRVVRDTIAEIGYNNAEYGFAAESVGVHPSLIEQSPDIAQGVNEALEVRGTGDQDPLDLIGAGDQGLMFGFAIDETPEFMPLPVSLSHKLVKKLADLRKSGEISYLRPDAKSQVTVEYDENDQPVRVDTVVISTQHDPEATNDQIRQDVIEKVIKAVIPAEYLDDETKFFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYSRHGGGAFSGKDATKVDRSASYAARYIAKNVVAAGLAKKAEVQLAYAIGVANPVSVRVDTFGTATVAESKLEAAVRDLFDLRPAGIIQMLDLKRPIYRQTAAYGHMGRTDVDLPWEKLDKVDALKAAVEA
>NZ_CP040804.1|WP_149561296.1|1112690_1113677_+|IS30-family-transposase
MSYHHFTIDERESILIYRTQGLNFSQIAKLLHRHPSSISREWKRHTKSGAYSPNHAQESYHNAKSHCGRKRMLEIDHNLSNTIKHLFLDYQWSPEEIEGQLRLEYGKTVVSYQTIYRAIYRGHFEDNSLSHGARGVIRKLRHRGKTRHTKGHVENRGKISISHTIHERPEEANNRTRIGDWEADTVAGKTGKACLVTLTDRYSRFLKIKKVAVKKSKLVIEAMVKLLEPLTKYTVTPDRGKEFTYHQKLSDQLNIKVYFPDPHAPWQRGTNENTNGLLREYFPKGSDLILVDDQTIQLWENKLNNRPRKCLNWKTPYEVFYGESMHLI
>NZ_CP040804.1|WP_045772069.1|1116477_1117629_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MGKLNIMVVFGTRPEAIKMAPLILELKKHQETINTITVVTAQHRQMLDQVLDTFEIVPDYDLDIMGKNQSLQEITSKILAKFDPVVKKEKPDLVLVHGDTTTTFAAGLVAFYNKVSIGHVEAGLRTYDKYSPYPEEMNRQMTDSFSDLYFAPTQESKANLLSENHKKEAIYVTGNTAIDALKLTVKDNYYHEVLDKIDDRRKIILVTMHRRENQGEPMHRVFKTLRLMVDNHPEIEVVYPVHLSPSVQAVAKEVLGDHDRIHLIAPLDVFDFHNLASRSYFIMSDSGGVQEEAPSLGKPVLVLRDTTERPEGVKAGTLKLVGTDTKKVKEAMESLLTDEALYKEMSEAPNPYGDGKAAERIVQAIKVYFNLADSVSEFHEGGD
>NZ_CP040804.1|WP_070578567.1|1117631_1118420_+|hypothetical-protein
MKKDKKVWYWILFLIFFEALLFSYCYQFNPEYFMFESILLVLGIGAVCFLSELLITWMIILSFALSIFILVSGVVYISLQDTLVLIFSFPLLLGILSKIKSYFYKYISSVQIEERKARKSYQAVLKEIKLNENKFINALLIHYSHEEQFFELDPREYNHLITSIYLKISKQLNRFEKIFYVADGSFLILSKNDSRNLNDFYKNSLERQLKGITFDWGNNHQSIQFQTGFLEINKNNLKKFDDYSELISNLNRQLETDIIVEY
>NZ_CP040804.1|WP_014633211.1|1118564_1119875_+|glycosyltransferase-family-2-protein
MVSQFLMIFTLVSIWISLIWGVVILVSGVHFWLKHSDFKVDKKALPYYPKVTIVVPAHNEDVVIAQTAKAILNLNYPHDKVELLLFADNCSDSTYEECLSVQALPEYEGRNITIINRKGTGGKAGVLNDALKMAEGDYICIYDADAMPEKNALYFLVKEVLKDPERRVAAFGRNKTRNAKQNFLTRCINQEIVVTQRVHHVGMWHLFKIGRIPGTNFIIQTDFVKSIGGWRNGALTEDTDISFKIMQSGKLIALAYNSEAFQQEPETLKSYYMQRKRWAKGNYEVVLSNFKHLFGKGNWRVKLEVANYSCIFFWFNGAIVLSDLIFFANVLAIILHPFFPTIQIPFAFDASNIYIAQLMLFNWLLMIGLYLLQINVALASQFGQATSKQVWLAILSYFSYAQLFIIVSLDSLWSIIMDKVLHREGTTWVKTKRFAE
>NZ_CP040804.1|WP_013990687.1|1119883_1120987_+|endoglucanase
MKIKYFKYFWFIVTLGLFVFLMFSVRIKTKTDIRNRIYQQWERHFVVKDGNEAYIKTTNDKDKDIVLSESQSYGMLITVRAAQKGLASQQDFERLYKYYLSHRIEGSQLMSWEQIVQKSSKNVDEHNATDGDLYIAYALIEASKQWPSQKDEYQTQSKAILQDILKYNYNENTGILTVGNWANRDSKYYNLMRTSDALPKQFQSFYEVTKDKKWLSISDKMLSSLETISSQTETGLIPDFIWVDQSGVRNVKPHTISSQFDSTYSYNACRLPYNLTQSNDEKSQRVLSKLLDFFMTQKNIFSNYNLDGNFLDDHQAACFKAPIALAADKDSGYLKLVQQNKIVFMQNLPVNNYYDSAIITLVTMEFF
>NZ_CP040804.1|WP_149561297.1|1121308_1121545_+|DUF1146-domain-containing-protein
MTIINQFVTLASHLVFIGLSYHMLISLFDWAKIIKNPIENTEKLKLFLLFISIALGYLISSFILSVLAFGQNMASSIS
>NZ_CP040804.1|WP_045769137.1|1121612_1122884_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDKIIVQGGNTRLSGEVVIEGAKNAVLPLLAATILASEGQTTLTNVPILSDVYTMNNVVRGLDIAVDFDEENNTVVVDASGEILDQAPYEYVSKMRASIVVLGPILARNGHAKVSMPGGCTIGSRPIDLHLKGLEAMGAKITQVGGDITATVENLKGATIYMDFPSVGATQNLMMAATLADGVTTIENAAREPEIVDLALLLNEMGADVKGAGTETLVIKGVKALHGTKHAVVQDRIEAGTFMVAAAMTSGDVLIKDAIWEHNRPLISKLLEMGVDVKEEEGGIRVKSDVSQLKPVTVKTLPHPGFPTDMQAQFTALMAVVNGESTMIETVFENRFQHLEEMRRMGLHSEILRDTAMIHGGLPLQGAQVMSTDLRASAALILTGMVAEGTTTVGKLTHLDRGYYQFHEKLAKLGANISRVSEA

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Crispr_ID: NZ_CP040804_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040804_4

2136625-2136718

Orphan

Consensus_repeat	Method
TTAATCGCCAACTCGAATTTTAGAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040804_4

>merge|NZ_CP040804|4|2136625-2136718|CRISPRCasFinder
TTAATCGCCAACTCGAATTTTAGAACACATCTTATAACTAAGATAACATTTTGGGTGGGAACGGCCCTTAATTGCCAACTCGAATTTTAGAACA

>NZ_CP040804|4|4|2136625-2136718|CRISPRCasFinder
TTAATCGCCAACTCGAATTTTAGAACA	CATCTTATAACTAAGATAACATTTTGGGTGGGAACGGCCC
TTAATTGCCAACTCGAATTTTAGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040804.1\|WP_002886472.1\|2138339_2138492_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP040804.1\|WP_002886467.1\|2142317_2142635_+\|DUF2752-domain-containing-protein	unknown	unknown	gnl\|CDD\|378499
NZ_CP040804.1\|WP_002886470.1\|2140933_2141803_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP040804.1\|WP_002883656.1\|2138154_2138331_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP040804.1\|WP_014633637.1\|2131778_2132234_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040804.1\|WP_045001958.1\|2127876_2128719_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NZ_CP040804.1\|WP_149561495.1\|2138540_2140868_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP040804.1\|WP_014633834.1\|2141985_2142318_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP040804.1\|WP_149561496.1\|2142736_2143582_+\|superinfection-immunity-protein	unknown	unknown	gnl\|CDD\|379585
NZ_CP040804.1\|WP_014633633.1\|2126167_2126878_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP040804.1\|WP_038675221.1\|2143665_2145285_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP040804.1\|WP_014633635.1\|2128718_2129585_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040804.1\|WP_149561493.1\|2132332_2134834_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP040804.1\|WP_045771708.1\|2135027_2135795_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP040804.1\|WP_002886486.1\|2127402_2127858_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|335768
NZ_CP040804.1\|WP_002886480.1\|2129933_2130347_-\|YjdF-family-protein	unknown	unknown	gnl\|CDD\|378596
NZ_CP040804.1\|WP_045771707.1\|2135787_2136597_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP040804.1\|WP_149561494.1\|2136795_2137284_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|238813
NZ_CP040804.1\|WP_149561492.1\|2126967_2127393_-\|DUF3021-family-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP040804.1\|WP_002883644.1\|2137414_2137954_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161

Protein	Function_ID	Function_description	E-value
NZ_CP040804.1\|WP_002886472.1\|2138339_2138492_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	2.86471e-18
NZ_CP040804.1\|WP_002886467.1\|2142317_2142635_+\|DUF2752-domain-containing-protein	gnl\|CDD\|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	3.85539e-07
NZ_CP040804.1\|WP_002886470.1\|2140933_2141803_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	8.12867e-85
NZ_CP040804.1\|WP_002883656.1\|2138154_2138331_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	2.68913e-10
NZ_CP040804.1\|WP_014633637.1\|2131778_2132234_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.34078e-13
NZ_CP040804.1\|WP_045001958.1\|2127876_2128719_-\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	0.000211799
NZ_CP040804.1\|WP_149561495.1\|2138540_2140868_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040804.1\|WP_014633834.1\|2141985_2142318_+\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	1.92964e-12
NZ_CP040804.1\|WP_149561496.1\|2142736_2143582_+\|superinfection-immunity-protein	gnl\|CDD\|379585	pfam14373, Imm_superinfect, Superinfection immunity protein. This family includes the E. coli bacteriophage T4 superinfection immunity (imm) protein. When E. coli is sequentially infected with two T-even type bacteriophage the DNA of the superinfecting phage is excluded from the host, into the periplasmic space. The immunity protein plays a role in this process.	9.16213e-08
NZ_CP040804.1\|WP_014633633.1\|2126167_2126878_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.24139e-46
NZ_CP040804.1\|WP_038675221.1\|2143665_2145285_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP040804.1\|WP_014633635.1\|2128718_2129585_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.44455e-82
NZ_CP040804.1\|WP_149561493.1\|2132332_2134834_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP040804.1\|WP_045771708.1\|2135027_2135795_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.22274e-70
NZ_CP040804.1\|WP_002886486.1\|2127402_2127858_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|335768	pfam04397, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	1.56186e-21
NZ_CP040804.1\|WP_002886480.1\|2129933_2130347_-\|YjdF-family-protein	gnl\|CDD\|378596	pfam11208, DUF2992, Protein of unknown function (DUF2992). This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologs of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesize nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches.	5.83866e-41
NZ_CP040804.1\|WP_045771707.1\|2135787_2136597_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.27352e-76
NZ_CP040804.1\|WP_149561494.1\|2136795_2137284_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	4.4233e-13
NZ_CP040804.1\|WP_149561492.1\|2126967_2127393_-\|DUF3021-family-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	7.3809e-08
NZ_CP040804.1\|WP_002883644.1\|2137414_2137954_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.28618e-82

>NZ_CP040804.1|WP_045771707.1|2135787_2136597_+|Cof-type-HAD-IIB-family-hydrolase
MSNIRLIISDIDGTILTSNHQVDQKLIEVMPELEKANIPFVLASARSPLGMQPIAHKLGLHDNPIACYNGALVLEGDRTIIQHPVDKAEIQDLLNYLSTDYPSVSVNIYSGKDWITNELDKWSQLEGSITGESPIIKELQDTVSDSEPPVHKLLLIDDPEVIQDLHQKLLSMDFPQTAFYLSKDNYLEVTAKHVSKEHALLELAKYYDLPLEQVMTIGDNFNDSPMLALAGLGIAMGNAPEGVKETANLVTASNDEHGVAQAIRKHVLN
>NZ_CP040804.1|WP_045771708.1|2135027_2135795_+|DeoR/GlpR-transcriptional-regulator
MYQEQRLEKILTLLEERGSLSVKEMVDALGVSKDTVRRDFDCLSQRNLAQRTHGGILPVKNTTVLGFQERQEELTEDKKKLADLALSFVKDQSLLFFDVSTLMLEVSQKLTKSVTVYSHSLDNALVLSGKEGIDFHLLGGRFYSKNRFYYSLHETQLLQHLQFDLAFFGAASLSQGVVSYEDEEDVAVKQLAMQAARTKILIAESDKYEKHSKYILGKIEDFDYWITDKEPDPDLVESLKDKVTILYDGKDSDYE
>NZ_CP040804.1|WP_149561493.1|2132332_2134834_-|leucine--tRNA-ligase
MSFYNHKEIEPKWQKYWADNHTFKTGTDASKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRFKRAQGYNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTAENIANFKRQINALGFSYDWDREVNTTDPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLNDLDDLDWPESIKDMQRNWIGKSTGANVTFKVKGTDKEFTVFTTRPDTLFGATFTVLAPEHDLVDAITTPEQAEAVADYKHQASLKSDLARTDLAKEKTGVWTGAYAVNPVNGKEIPIWIADYVLASYGTGAVMAVPAHDERDWEFAKQFDLPIVEVLEGGNVEEAAYTEDGLHVNSDFLNGLNKEEAIAKIVAWLEEKGFGQEKITYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTREDDVKGRRETNTMPQWAGSSWYYLRYIDPHNTEKLADEDLLKQWLPVDIYVGGAEHAVLHLLYARFWHKFLYDLGVVPTKEPFQKLFNQGMILGTSYRDHRGALVATDKVEKRDGSFFHVETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITSKEIVAENNGSLDKVYNETVKSVTEQIESMKFNTAIAQLMVFVNAANKEDKLYVDYAKGFIQLIAPFAPHLAEELWQTVAETGESISYVAWPTWDESKLVEDEIEIVVQIKGKVRAKLMVAKDLSREELQEVALANEKVKAEIDGKEIVKVIAVPNKLVNIVVK
>NZ_CP040804.1|WP_014633637.1|2131778_2132234_-|MarR-family-transcriptional-regulator
MNKKELHKFNNRFNSFVLAFEQLKKAQHRNSIDKSITINEVHLIDLIGRNQPVNLVKLSELLEVSRSAITQSVRRLTKKDLVSFEFAPDNEKNKYLILSKKGVDVFNIHKEQQEHIEKAISSVLRNYSDEDLQMVMKLMDDVEKVWQELPW
>NZ_CP040804.1|WP_002886480.1|2129933_2130347_-|YjdF-family-protein
METISIGLTVYFEDGFWHGLFEQVYRESYQVCRVTFGQEPKDDEILEILQTQFTQLSFSPETTANQHVKIKNPKRLQRAVKKQVNQKVSSKSKELLQLQYEERKKISKHQSSVQKQLLKQEKFERKQQKRRDKHKGH
>NZ_CP040804.1|WP_014633635.1|2128718_2129585_-|ABC-transporter-ATP-binding-protein
MILQAKNISKRYGNHLAVDNIQLQFKRGTFNAILGPNGAGKSTTISMLIGLKQPTKGEIIYEPGAKIGMVFQTSVLDEMLTVRENLAIRARQYKGLKPNRVSDLIGRLGLSAFQKQRYGTLSGGQKRRVDIARALLHSPDLLFLDEPTTGLDIQTRKSIWDLLYQLQREEGMTVVLTTHYLDEADEADQIYIVDHGKVIAQGSALDIKSRYAKNILKIRFKEIQQIESLKTSGMSVEQQSQLEYVFQPESEREAIDYLAQVRDRIAHFEFRPGTMDDAFIALTGREVR
>NZ_CP040804.1|WP_045001958.1|2127876_2128719_-|ABC-transporter-permease
MLALLKRNFLLYFRNRSGVFFSLLGALISFILYIIFLQKNLTDAWNQLPNSGPLLNNWLMSGTLAVTGITTSLAALTQLVKDREHQVDQDLYLSNHGKWQLPFSYLASAIIISFAMQVLMYVLMCGYFREVPNLYILPEVLLIMLLSSLLSSLVNAIFVYFFQSVDSLGKFSTIVGTASGFLVGTYVPLGVLPDFAQLLMKCTPATYIAALYRQVLMKETLSETFKGQDNLLQEFQEKMGVQLKWQGLLTKENTYLIVLGGILLASILWIVLVKKTSQKK
>NZ_CP040804.1|WP_002886486.1|2127402_2127858_-|LytTR-family-transcriptional-regulator
MKLRFEEKSDISAKDPCVVIQAERLSDQAREVMDYLEQFSVVNQVVIPIKTDDHLVMVKIDDIILAEIDKNVLTIYTVNNTYTMRETLTNFQHRINRRSFLQISRHAVMNIDHLESLSDSFSGNMMAKMTGGVKSSVSRKYVKSLMDYLGV
>NZ_CP040804.1|WP_149561492.1|2126967_2127393_-|DUF3021-family-protein
MKRLIAYFVSGVRTGSFFYLALLLLGQLFPQLIYPKVSVGNILALFMMSGLMGMLSWILEEIDCISYRLRIILHFLLTVIVLTVTCLISGWYEALTNPAIWIVFIFVYSIIWLYLIWQMHMRTQRINQALLHRRSQKKKEK
>NZ_CP040804.1|WP_014633633.1|2126167_2126878_-|MerR-family-transcriptional-regulator
MKSVKEVSQLSGVSVRTLHYYDEIDLLKPSVVAENGYRYYNRDAVVRLQEILLYRELDFPLKKIKEIVGQPGYDKVQALRDQIKLLELKKSRLEAVIAHAKALQMEEEEMSFEAFDQKAVEAFQEEAQARWGQTEAYQAFVAKGEESFPEVTKEMTAIMSTFGQLKEYNPGDDSVQEQVKSLQDYISQHFYPCNQTVLAGLGQMYQTDNRFSSFIDKVGGSGTAAFLAEAIRIYCQ
>NZ_CP040804.1|WP_149561494.1|2136795_2137284_-|phosphatase-PAP2-family-protein
MMNYKRFYDRISAPLRSYAKVLEGLNKLITRTFYLLFPIFLIWVWLRNGWFVLSTTVLIMGGGFFLLSLGRSLYNRPRPYQTWEIQPLIKKDSLGKSFPSRHVFSATVIAMLALTLNPWLGGTMLFLAGALALLRVLGGVHYPSDVLAGYVIGIFIGLLLYL
>NZ_CP040804.1|WP_002883644.1|2137414_2137954_-|transcription-termination/antitermination-protein-NusG
MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVNVEKNGKVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVDVFDTNIKVGDVVQIIDGAFMGQEGRVVEIENNKVKIMINMFGSETAAELELYQIAEL
>NZ_CP040804.1|WP_002883656.1|2138154_2138331_-|preprotein-translocase-subunit-SecE
MRQTGSIFKVLKDTTWPDRKQRWHDFISVLEYTAFFTVIIYAFDELLSRAMSALINFF
>NZ_CP040804.1|WP_002886472.1|2138339_2138492_-|50S-ribosomal-protein-L33
MAQKKASLACAECGSRNYSINVSSTPKPTRLEVNKFCKHCKKYTLHKETR
>NZ_CP040804.1|WP_149561495.1|2138540_2140868_-|PBP1A-family-penicillin-binding-protein
MTFFDNLKNKLFKEETSGKGQESQPAGKSKDLQDKIKGLFAKKPDEVEQAVEDLDMSQESQETSRYQRSKQKKPIDTTKPLGKVQAFLSKFTLSPRNPIRRFWRRYHIGKILFIMVAVLVLTVGSYLFYIAKTTNVSDLQDALKATTVIYDKEGNQAGSLSGQKGTYVELDAISDSLENAVIATEDRTFYENSGVNVKRFLLAIVSMGRFGGGSTITQQLAKNAFLTQEQTVTRKAKEFFLSLELTKKYSKQEILTMYLNNAYFGNGVWGVEDASQKYFGTSAANLTVDEAATLAGMLKGPEIYNPIDNIQNATNRRNTVLANMVDDKKLSQADADSAAGVDMASRLDDTYQGTGDDYKYPSYFDAVIEEATKTYGLSEDEIVKNGYKIYTEMDANSQANMQQTYENTYLFPTSESDGSTAQSASVALDPTTGAVRGLVGRVGGTSDTTFRNFNYATQGKRSPGSTIKPLVVYAPALASGWSINKDLPNKPIDYNGYTPTNYGDIETEDVPMYQALANSYNIPAVYLFNQIGIQKGISYGQKFGLNFDNVPEELGISLGGGVTASPLQMAQAYATFANGGEMNTAYFITKIENASGDIIATHSKKSKRVISQSVANQMTSMMLGTFSNGSAVNANYTGYTMAGKTGTVQAEFNKDLTSDQWVIGYTPDVVMTTWIGFDKTDESHYLTGASSGTASTIFSYIAADVLPNTPGTEFTVENAYAADGQTLDYTADPNDSRNSSNKSWTDKASDVVNDVKDQASSLWDKITDSFSGLFR
>NZ_CP040804.1|WP_002886470.1|2140933_2141803_+|RluA-family-pseudouridine-synthase
MTLHVEIINPYPATTVKDLLETKLLIPRKIRHFLRTKKHVLINGEAINWQSPVEKGDKISLTFDREDYPEKIIPMGNASLVEPLYEDQHLIVVNKPEGMKTHGNEPTEIALLNHVSAYCGQTCYVVHRLDMETSGAVLFAKNPFILPILNRLLEDKKIQRQYWALAEGKFQTKETVYNDKIGRDRHDRRKRVVDPRKGQVAYTTITRLKNFKGASLVNCQLKTGRTHQIRVHLAHHGHAILGDPLYSHRPASRLMLHAHTLSFTHPLTLDKITVKASSDSFEQGLRNHK
>NZ_CP040804.1|WP_014633834.1|2141985_2142318_+|TM2-domain-containing-protein
MNPADQWLAINAKYFPAEQIQYIRQRIEALPEAQVQLLYTLSFQDPTMMLVISLFGGSLGIDRFILGHVGLGVGKLLTCGGCGIWTIVDWFLIMDATRQANAQKLYSLIG
>NZ_CP040804.1|WP_002886467.1|2142317_2142635_+|DUF2752-domain-containing-protein
MKIYFTRLWAYHQRFFRLYLLLFVAIYGIYLLHLPTPLSLILKPFGIKSWSAGLTRASVRLLHLDWQGAWDYNPLIYPLVIYIFTYIFLFPILSDKKVNTKVLGK
>NZ_CP040804.1|WP_149561496.1|2142736_2143582_+|superinfection-immunity-protein
MKQQDWIDFFQAVNGRNPSIQEMADAAKRGEFVRETPKQTVEVTETVSQKETVETKQDSEVVEPAESAPSTEVVESPENDVDSYDVAEEPLTNSMVDEEETFQATNLAQENQSKTFQEQVKPVVETASQTVNQFANQTGETFQQASKNLNETWKKQDKKTQTNLIMLAVASIPAILWALGMILLGIASDDLSAGLITALLSVIINFPLVVLLILPALLNKTDKKWPIFILSFLLGWTFIGWIILLAVSINTNKEAERIRQQQMMMQMAGQQGSSDTFNPFQ
>NZ_CP040804.1|WP_038675221.1|2143665_2145285_-|chaperonin-GroEL
MAKDIKFSSDARAAMVRGVDTLADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEAAVATAVEELKAIAQPVANKEAIAQVAAVSSRSEKVGEYISEAMERVGNDGVITIEESRGMETELEVVEGMQFDRGYLSQYMVTDNEKMVADLENPFILVTDKKISNIQDVLPLLEEVLKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAVLTGATVITEDLGLELKDATMAALGQASKVTVDKDSTVIVEGAGSTEAIANRVNLIKSQLETTTSEFDREKLQERLAKLSGGVAVVKVGAATETALKEMKLRIEDALNATRAAVEEGIVAGGGTALVNVIAKVAELDLEGDDATGRNIVLRALEEPVRQIAYNAGYEGSVIIDKLKNSPVGTGFNAANGEWVDMVEAGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPEAPAAPAMDPGMMGY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040804_2	2.10\|907200\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907200-907229	30	NZ_CP018188	Streptococcus salivarius strain ICDC2 plasmid, complete sequence	108138-108167	0	1.0
NZ_CP040804_2	2.10\|907200\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907200-907229	30	NZ_CP015284	Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence	9020-9049	0	1.0
NZ_CP040804_2	2.10\|907200\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907200-907229	30	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	19764-19793	0	1.0
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	NC_018285	Streptococcus phage YMC-2011, complete genome	29584-29613	0	1.0
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MK448899	Streptococcus phage Javan288, complete genome	19159-19188	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705251	Streptococcus phage P0091, complete genome	3842-3871	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705274	Streptococcus phage P7631, complete genome	5037-5066	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH973662	Streptococcus phage SW7, complete genome	4703-4732	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MF580761	Streptococcus phage 9A, complete genome	4070-4099	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892381	Streptococcus phage SWK5, complete genome	4765-4794	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705275	Streptococcus phage P7632, complete genome	5251-5280	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH937461	Streptococcus phage CHPC642, complete genome	3943-3972	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892379	Streptococcus phage SWK3, complete genome	4530-4559	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	NC_000871	Streptococcus phage Sfi19, complete genome	5381-5410	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MG708274	Streptococcus phage vB_SthS_VA214, complete genome	33140-33169	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892382	Streptococcus phage SWK6, complete genome	4639-4668	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892356	Streptococcus phage SW21, complete genome	4556-4585	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705276	Streptococcus phage P7633, complete genome	3933-3962	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892357	Streptococcus phage SW8, complete genome	4587-4616	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892378	Streptococcus phage SWK2, complete genome	5167-5196	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	AF115102	Streptococcus thermophilus bacteriophage Sfi19, complete genome	5381-5410	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892354	Streptococcus phage SW3, complete genome	4499-4528	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH937469	Streptococcus phage CHPC919, complete genome	3887-3916	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705257	Streptococcus phage P3684, complete genome	4332-4361	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892380	Streptococcus phage SWK4, complete genome	4530-4559	1	0.967
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892377	Streptococcus phage SWK1, complete genome	4698-4727	1	0.967
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK202161	Streptococcus phage CHPC1282, complete genome	29874-29902	2	0.931
NZ_CP040804_2	2.14\|907463\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907463-907491	29	MK448980	Streptococcus phage Javan536, complete genome	30727-30755	2	0.931
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892360	Streptococcus phage SW11, complete genome	4944-4973	2	0.933
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705270	Streptococcus phage P7573, complete genome	5316-5345	2	0.933
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MH892361	Streptococcus phage SW12, complete genome	4854-4883	2	0.933
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	MK448980	Streptococcus phage Javan536, complete genome	19822-19851	2	0.933
NZ_CP040804_2	2.15\|907528\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907528-907557	30	KY705271	Streptococcus phage P7574, complete genome	4333-4362	2	0.933
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MH892351	Streptococcus phage SW6, complete genome	30353-30381	3	0.897
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MH892375	Streptococcus phage SW30, complete genome	30538-30566	3	0.897
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK448855	Streptococcus phage Javan150, complete genome	10130-10158	3	0.897
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MG708274	Streptococcus phage vB_SthS_VA214, complete genome	4959-4988	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937495	Streptococcus phage CHPC1045, complete genome	28875-28904	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937496	Streptococcus phage CHPC1046, complete genome	29270-29299	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH892373	Streptococcus phage SW27, complete genome	29044-29073	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	KY705258	Streptococcus phage P4761, complete genome	33358-33387	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937464	Streptococcus phage CHPC869, complete genome	31755-31784	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937466	Streptococcus phage CHPC875, complete genome	31416-31445	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MK202159	Streptococcus phage CHPC1198, complete genome	28167-28196	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937510	Streptococcus phage CHPC1246, complete genome	31781-31810	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	FJ965538	Streptococcus phage 5093, complete genome	3461-3490	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	HE861935	Streptococcus phage TP-J34 complete genome	8165-8194	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937497	Streptococcus phage CHPC1048, complete genome	29356-29385	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937505	Streptococcus phage CHPC1109, complete genome	29189-29218	3	0.9
NZ_CP040804_2	2.5\|906870\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906870-906899	30	MH937490	Streptococcus phage CHPC1036, complete genome	31134-31163	3	0.9
NZ_CP040804_2	2.11\|907266\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907266-907294	29	MH937474	Streptococcus phage CHPC930, complete genome	26181-26209	3	0.897
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	KY065477	Streptococcus phage IPP37, partial genome	12115-12143	4	0.862
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK448816	Streptococcus phage Javan589, complete genome	12412-12440	4	0.862
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK448984	Streptococcus phage Javan562, complete genome	12412-12440	4	0.862
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK448985	Streptococcus phage Javan566, complete genome	13588-13616	4	0.862
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	KJ019089	Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome	167386-167415	5	0.833
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MK448931	Streptococcus phage Javan414, complete genome	9267-9295	5	0.828
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	MN032614	Aeromonas phage PS1, complete genome	132468-132496	5	0.828
NZ_CP040804_1	1.1\|615365\|27\|NZ_CP040804\|CRISPRCasFinder	615365-615391	27	NC_021796	Cellulophaga phage phi38:1, complete genome	42096-42122	6	0.778
NZ_CP040804_1	1.1\|615365\|27\|NZ_CP040804\|CRISPRCasFinder	615365-615391	27	KC821612	Cellulophaga phage phi40:1, complete genome	42091-42117	6	0.778
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	100313-100342	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	210558-210587	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	204442-204471	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	158172-158201	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	81661-81690	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	120417-120446	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	210558-210587	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_KM007159	Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence	7901-7930	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NC_008594	Lactococcus lactis subsp. lactis plasmid pL2, complete sequence	2818-2847	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NC_019763	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence	8666-8695	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NC_017485	Lactococcus lactis subsp. lactis CV56 plasmid pCV56D, complete sequence	3263-3292	6	0.8
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	947-975	6	0.793
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MN693525	Marine virus AFVG_25M131, complete genome	11306-11335	6	0.8
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	MN444876	Streptomyces phage Daubenski, complete genome	100479-100508	7	0.767
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP042535	Citrobacter freundii strain E51 plasmid pE51_001, complete sequence	161363-161391	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP019987	Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence	209170-209198	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP041248	Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence	51185-51213	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP026058	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence	296743-296771	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	306844-306872	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	427499-427527	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP018017	Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence	143939-143967	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	398698-398726	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP041047	Citrobacter sp. CF971 plasmid pBM527-1, complete sequence	108453-108481	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP050835	Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence	207471-207499	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP037735	Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence	62024-62052	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP026241	Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-e790, complete sequence	103241-103269	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	CP045556	Citrobacter sp. S39 plasmid pS39-1, complete sequence	95186-95214	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP045203	Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence	218061-218089	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP022152	Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence	52187-52215	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP030224	Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence	75498-75526	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP026213	Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence	42239-42267	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP011611	Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence	98331-98359	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	CP052139	Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence	123231-123259	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	11350-11378	7	0.759
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_MG387191	Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence	98104-98132	7	0.759
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	LR597655	Escherichia phage T5_ev219 genome assembly, chromosome: 1	7255-7284	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_031022	Shigella phage SHSML-45, complete genome	32664-32693	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373799	Escherichia phage vB_EcoS_EASG3, complete genome	6455-6484	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373799	Escherichia phage vB_EcoS_EASG3, complete genome	116943-116972	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_048855	Phage NBEco002, complete genome	7045-7074	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_048855	Phage NBEco002, complete genome	115052-115081	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373797	Escherichia phage vB_EcoS_HASG4, complete genome	6493-6522	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373797	Escherichia phage vB_EcoS_HASG4, complete genome	116830-116859	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373796	Escherichia phage vB_EcoS_HdH2, complete genome	7047-7076	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MK373796	Escherichia phage vB_EcoS_HdH2, complete genome	117001-117030	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_028754	Salmonella phage Shivani, complete genome	7189-7218	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_028754	Salmonella phage Shivani, complete genome	116164-116193	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	AP019559	Escherichia phage SP15 DNA, complete genome	6486-6515	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_017969	Escherichia phage bV_EcoS_AKFV33, complete genome	6486-6515	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MG969412	UNVERIFIED: Salmonella phage GE_vB_N5, complete genome	3264-3293	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MG969412	UNVERIFIED: Salmonella phage GE_vB_N5, complete genome	109772-109801	7	0.767
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	LN887948	Escherichia phage slur09 genome assembly slu09, chromosome : 1	16361-16390	7	0.767
NZ_CP040804_2	2.13\|907397\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907397-907426	30	MG676225	Aeromonas phage AhSzw-1, complete genome	100672-100701	7	0.767
NZ_CP040804_2	2.13\|907397\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907397-907426	30	NC_047949	Aeromonas phage AhSzq-1, partial genome	97116-97145	7	0.767
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	119574-119603	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	CP041518	Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence	71085-71114	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NZ_CP018876	Bacillus megaterium strain JX285 plasmid 3, complete sequence	32865-32894	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	KU057941	Clostridium phage CDSH1, complete genome	17631-17660	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	LN881738	Escherichia phage slur17, complete genome	2777-2806	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	HM568888	Clostridium phage phiCD38-2, complete genome	17127-17156	8	0.733
NZ_CP040804_2	2.2\|906673\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906673-906702	30	NC_028958	Clostridium phage phiCD146, complete genome	17136-17165	8	0.733
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP011133	Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence	153212-153240	8	0.724
NZ_CP040804_2	2.3\|906739\|29\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	906739-906767	29	NZ_CP035215	Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence	232175-232203	8	0.724
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431732	Bacteriophage T5-like pork29, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431732	Bacteriophage T5-like pork29, complete genome	117181-117210	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431731	Bacteriophage T5-like pork27, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431731	Bacteriophage T5-like pork27, complete genome	117178-117207	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_047835	Escherichia phage OSYSP, complete genome	87248-87277	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431733	Bacteriophage T5-like saus47N, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431733	Bacteriophage T5-like saus47N, complete genome	117181-117210	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431735	Bacteriophage T5-like poul124, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431735	Bacteriophage T5-like poul124, complete genome	117188-117217	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431734	Bacteriophage T5-like saus111K, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	MF431734	Bacteriophage T5-like saus111K, complete genome	117179-117208	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_047885	Bacteriophage T5-like chee24, complete genome	6527-6556	8	0.733
NZ_CP040804_2	2.8\|907068\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907068-907097	30	NC_047885	Bacteriophage T5-like chee24, complete genome	117181-117210	8	0.733
NZ_CP040804_2	2.10\|907200\|30\|NZ_CP040804\|CRISPRCasFinder,CRT,PILER-CR	907200-907229	30	NC_017060	Rahnella aquatilis HX2 plasmid PRA1, complete sequence	83072-83101	9	0.7

1. spacer 2.10|907200|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

attatttatccccacgtagccatttcacca	CRISPR spacer
attatttatccccacgtagccatttcacca	Protospacer
******************************

2. spacer 2.10|907200|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015284 (Streptococcus salivarius strain ATCC 25975 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

attatttatccccacgtagccatttcacca	CRISPR spacer
attatttatccccacgtagccatttcacca	Protospacer
******************************

3. spacer 2.10|907200|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 0, identity: 1.0

attatttatccccacgtagccatttcacca	CRISPR spacer
attatttatccccacgtagccatttcacca	Protospacer
******************************

4. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_018285 (Streptococcus phage YMC-2011, complete genome) position: , mismatch: 0, identity: 1.0

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcat	Protospacer
******************************

5. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448899 (Streptococcus phage Javan288, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

6. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

7. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705274 (Streptococcus phage P7631, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

8. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH973662 (Streptococcus phage SW7, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

9. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF580761 (Streptococcus phage 9A, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

10. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892381 (Streptococcus phage SWK5, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

11. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705275 (Streptococcus phage P7632, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

12. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937461 (Streptococcus phage CHPC642, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

13. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892379 (Streptococcus phage SWK3, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

14. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_000871 (Streptococcus phage Sfi19, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

15. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MG708274 (Streptococcus phage vB_SthS_VA214, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

16. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892382 (Streptococcus phage SWK6, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

17. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892356 (Streptococcus phage SW21, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

18. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705276 (Streptococcus phage P7633, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

19. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892357 (Streptococcus phage SW8, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

20. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892378 (Streptococcus phage SWK2, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

21. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to AF115102 (Streptococcus thermophilus bacteriophage Sfi19, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

22. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892354 (Streptococcus phage SW3, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

23. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937469 (Streptococcus phage CHPC919, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

24. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705257 (Streptococcus phage P3684, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

25. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892380 (Streptococcus phage SWK4, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

26. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892377 (Streptococcus phage SWK1, complete genome) position: , mismatch: 1, identity: 0.967

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacatgccaaagtattcgt	Protospacer
****************************.*

27. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 2, identity: 0.931

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
ttctaacaaagataattacgacatcatgt	Protospacer
************.***************.

28. spacer 2.14|907463|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448980 (Streptococcus phage Javan536, complete genome) position: , mismatch: 2, identity: 0.931

aaaaggctcggtggtggaagtggacatgt	CRISPR spacer
caaaggctcggtgctggaagtggacatgt	Protospacer
 ************ ***************

29. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892360 (Streptococcus phage SW11, complete genome) position: , mismatch: 2, identity: 0.933

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacataccaaagtattcgt	Protospacer
****************.***********.*

30. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705270 (Streptococcus phage P7573, complete genome) position: , mismatch: 2, identity: 0.933

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacataccaaagtattcgt	Protospacer
****************.***********.*

31. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892361 (Streptococcus phage SW12, complete genome) position: , mismatch: 2, identity: 0.933

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacataccaaagtattcgt	Protospacer
****************.***********.*

32. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448980 (Streptococcus phage Javan536, complete genome) position: , mismatch: 2, identity: 0.933

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtgctagacatgccaaagtattcgt	Protospacer
*******.********************.*

33. spacer 2.15|907528|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705271 (Streptococcus phage P7574, complete genome) position: , mismatch: 2, identity: 0.933

gataggtactagacatgccaaagtattcat	CRISPR spacer
gataggtactagacataccaaagtattcgt	Protospacer
****************.***********.*

34. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892351 (Streptococcus phage SW6, complete genome) position: , mismatch: 3, identity: 0.897

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
ttctaacaaggataattacgacatcatgt	Protospacer
*********.**.***************.

35. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892375 (Streptococcus phage SW30, complete genome) position: , mismatch: 3, identity: 0.897

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
ttctaacaaggataattacgacatcatgt	Protospacer
*********.**.***************.

36. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448855 (Streptococcus phage Javan150, complete genome) position: , mismatch: 3, identity: 0.897

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tgccaacaaagacaattatgacatcatgc	Protospacer
* *.**************.**********

37. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MG708274 (Streptococcus phage vB_SthS_VA214, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

38. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937495 (Streptococcus phage CHPC1045, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

39. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937496 (Streptococcus phage CHPC1046, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

40. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH892373 (Streptococcus phage SW27, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

41. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY705258 (Streptococcus phage P4761, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

42. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937464 (Streptococcus phage CHPC869, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

43. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937466 (Streptococcus phage CHPC875, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

44. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK202159 (Streptococcus phage CHPC1198, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

45. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937510 (Streptococcus phage CHPC1246, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

46. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to FJ965538 (Streptococcus phage 5093, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

47. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to HE861935 (Streptococcus phage TP-J34 complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

48. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937497 (Streptococcus phage CHPC1048, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

49. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937505 (Streptococcus phage CHPC1109, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

50. spacer 2.5|906870|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937490 (Streptococcus phage CHPC1036, complete genome) position: , mismatch: 3, identity: 0.9

cgaattgatgccattgattcgctcctccgt	CRISPR spacer
caaattgatgccattgtttctctcctccgt	Protospacer
*.************** *** *********

51. spacer 2.11|907266|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MH937474 (Streptococcus phage CHPC930, complete genome) position: , mismatch: 3, identity: 0.897

gagcaagcacgctacttcgacatcattct	CRISPR spacer
gagcaagtacgctactttgacatcatttt	Protospacer
*******.*********.*********.*

52. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KY065477 (Streptococcus phage IPP37, partial genome) position: , mismatch: 4, identity: 0.862

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
ctctaataaagacaattacgacattatgt	Protospacer
.*****.*****************.***.

53. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448816 (Streptococcus phage Javan589, complete genome) position: , mismatch: 4, identity: 0.862

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tgccaataaagacaattatgacatcatgc	Protospacer
* *.**.***********.**********

54. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 4, identity: 0.862

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tgccaataaagacaattatgacatcatgc	Protospacer
* *.**.***********.**********

55. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448985 (Streptococcus phage Javan566, complete genome) position: , mismatch: 4, identity: 0.862

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tgccaataaagacaattatgacatcatgc	Protospacer
* *.**.***********.**********

56. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KJ019089 (Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome) position: , mismatch: 5, identity: 0.833

gtcgatt--tgatagtttaattaaagctgatg	CRISPR spacer
--agattgctgatagtttaattacagatgatg	Protospacer
   ****  ************** ** *****

57. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 5, identity: 0.828

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tcaaaacaaagataattatgacatcatgc	Protospacer
*.  ********.*****.**********

58. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MN032614 (Aeromonas phage PS1, complete genome) position: , mismatch: 5, identity: 0.828

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
ctttaacaaagtcaatgacgacatcatcc	Protospacer
.*.******** **** ********** *

59. spacer 1.1|615365|27|NZ_CP040804|CRISPRCasFinder matches to NC_021796 (Cellulophaga phage phi38:1, complete genome) position: , mismatch: 6, identity: 0.778

actcttgacacgtttttgcgatagcgt	CRISPR spacer
cctcgtgacacgtttttgcgatgttgc	Protospacer
 *** *****************. .*.

60. spacer 1.1|615365|27|NZ_CP040804|CRISPRCasFinder matches to KC821612 (Cellulophaga phage phi40:1, complete genome) position: , mismatch: 6, identity: 0.778

actcttgacacgtttttgcgatagcgt	CRISPR spacer
cctcgtgacacgtttttgcgatgttgc	Protospacer
 *** *****************. .*.

61. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

62. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

63. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

64. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

65. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

66. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

67. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ggggatttgatagtttaaataaagcctttg	Protospacer
*  *************** ******.  **

68. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM007159 (Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttg---atagtttaattaaagctgatg	CRISPR spacer
---aatttgtttatagtttaattcaagctgata	Protospacer
   .*****   *********** ********.

69. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_008594 (Lactococcus lactis subsp. lactis plasmid pL2, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttg---atagtttaattaaagctgatg	CRISPR spacer
---aatttgtttatagtttaattcaagctgata	Protospacer
   .*****   *********** ********.

70. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_019763 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.01, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
tttggttcaatattttaattaaagctgatg	Protospacer
 *.*.**..*** *****************

71. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_017485 (Lactococcus lactis subsp. lactis CV56 plasmid pCV56D, complete sequence) position: , mismatch: 6, identity: 0.8

gtcgatttg---atagtttaattaaagctgatg	CRISPR spacer
---aatttgtttatagtttaattcaagctgata	Protospacer
   .*****   *********** ********.

72. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 6, identity: 0.793

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
tgagaacaaagacaattacgccaacatgt	Protospacer
*   **************** ** ****.

73. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MN693525 (Marine virus AFVG_25M131, complete genome) position: , mismatch: 6, identity: 0.8

aataccgttaccatcaatagccatttcgta	CRISPR spacer
aatatcgttaccatcaatagcaaatccttc	Protospacer
****.**************** * *.* *

74. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MN444876 (Streptomyces phage Daubenski, complete genome) position: , mismatch: 7, identity: 0.767

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
ttcgatttgatagtttcattatagtggacc	Protospacer
 *************** **** **. **.

75. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042535 (Citrobacter freundii strain E51 plasmid pE51_001, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

76. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019987 (Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

77. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041248 (Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

78. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026058 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

79. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

80. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

81. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018017 (Kosakonia radicincitans DSM 16656 plasmid pKrDSM16656L, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

82. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

83. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041047 (Citrobacter sp. CF971 plasmid pBM527-1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

84. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050835 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

85. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037735 (Citrobacter freundii strain CAV1857 plasmid pCAV1857-208, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

86. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026241 (Citrobacter freundii complex sp. CFNIH9 plasmid pCFR-e790, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

87. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to CP045556 (Citrobacter sp. S39 plasmid pS39-1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

88. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045203 (Citrobacter sp. NMI7904_11 plasmid pCTEL-2, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

89. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022152 (Citrobacter freundii strain 705SK3 plasmid p705SK3_1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

90. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030224 (Salmonella enterica strain SA20083039 plasmid pSA20083039.1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

91. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026213 (Citrobacter sp. CFNIH10 plasmid pKPC-933d, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

92. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011611 (Citrobacter freundii strain CAV1321 plasmid pKPC_CAV1321-244, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

93. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to CP052139 (Klebsiella pneumoniae strain F17KP0040 plasmid pF17KP0040-1, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

94. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026234 (Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

95. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MG387191 (Citrobacter freundii strain 2262 plasmid pTEM-2262, complete sequence) position: , mismatch: 7, identity: 0.759

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacaattacgacatcatca	Protospacer
  . ******.****************

96. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to LR597655 (Escherichia phage T5_ev219 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

97. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_031022 (Shigella phage SHSML-45, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

98. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373799 (Escherichia phage vB_EcoS_EASG3, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

99. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373799 (Escherichia phage vB_EcoS_EASG3, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

100. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_048855 (Phage NBEco002, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

101. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_048855 (Phage NBEco002, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

102. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373797 (Escherichia phage vB_EcoS_HASG4, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

103. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373797 (Escherichia phage vB_EcoS_HASG4, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

104. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373796 (Escherichia phage vB_EcoS_HdH2, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

105. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MK373796 (Escherichia phage vB_EcoS_HdH2, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

106. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_028754 (Salmonella phage Shivani, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

107. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_028754 (Salmonella phage Shivani, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

108. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to AP019559 (Escherichia phage SP15 DNA, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

109. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_017969 (Escherichia phage bV_EcoS_AKFV33, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

110. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MG969412 (UNVERIFIED: Salmonella phage GE_vB_N5, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

111. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MG969412 (UNVERIFIED: Salmonella phage GE_vB_N5, complete genome) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

112. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to LN887948 (Escherichia phage slur09 genome assembly slu09, chromosome : 1) position: , mismatch: 7, identity: 0.767

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattacagc	Protospacer
* ********.****** ******* *.

113. spacer 2.13|907397|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 7, identity: 0.767

tacgctcttgttcacccttgtctctgttac	CRISPR spacer
tacgctcttgttcagccttctctttagcag	Protospacer
************** **** ***.*. .*

114. spacer 2.13|907397|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_047949 (Aeromonas phage AhSzq-1, partial genome) position: , mismatch: 7, identity: 0.767

tacgctcttgttcacccttgtctctgttac	CRISPR spacer
tacgctcttgttcagccttctctttagcag	Protospacer
************** **** ***.*. .*

115. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
cttcatttaatagtttaattaaagcttcca	Protospacer
 *. ****.*****************  ..

116. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
cttcatttaatagtttaattaaagcttcca	Protospacer
 *. ****.*****************  ..

117. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
cttcatttaatagtttaattaaagcttcca	Protospacer
 *. ****.*****************  ..

118. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to KU057941 (Clostridium phage CDSH1, complete genome) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
taaaagtagatagattaattaaagctgata	Protospacer
   .* * ***** ***************.

119. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to LN881738 (Escherichia phage slur17, complete genome) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
taaaagtagatagattaattaaagctgata	Protospacer
   .* * ***** ***************.

120. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to HM568888 (Clostridium phage phiCD38-2, complete genome) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
taaaagtagatagattaattaaagctgata	Protospacer
   .* * ***** ***************.

121. spacer 2.2|906673|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_028958 (Clostridium phage phiCD146, complete genome) position: , mismatch: 8, identity: 0.733

gtcgatttgatagtttaattaaagctgatg	CRISPR spacer
taaaagtagatagattaattaaagctgata	Protospacer
   .* * ***** ***************.

122. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011133 (Citrobacter amalonaticus Y19 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacatttacgacatcatca	Protospacer
  . ******.*** ************

123. spacer 2.3|906739|29|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035215 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-A, complete sequence) position: , mismatch: 8, identity: 0.724

ttctaacaaagacaattacgacatcatgc	CRISPR spacer
agtaaacaaaaacatttacgacatcatca	Protospacer
  . ******.*** ************

124. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431732 (Bacteriophage T5-like pork29, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

125. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431732 (Bacteriophage T5-like pork29, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

126. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431731 (Bacteriophage T5-like pork27, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

127. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431731 (Bacteriophage T5-like pork27, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

128. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_047835 (Escherichia phage OSYSP, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

129. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431733 (Bacteriophage T5-like saus47N, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

130. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431733 (Bacteriophage T5-like saus47N, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

131. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431735 (Bacteriophage T5-like poul124, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

132. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431735 (Bacteriophage T5-like poul124, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

133. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431734 (Bacteriophage T5-like saus111K, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

134. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to MF431734 (Bacteriophage T5-like saus111K, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

135. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_047885 (Bacteriophage T5-like chee24, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

136. spacer 2.8|907068|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_047885 (Bacteriophage T5-like chee24, complete genome) position: , mismatch: 8, identity: 0.733

aataccgttaccatcaatagccatttcgta	CRISPR spacer
attaccgttatcatcaaaagccattatagc	Protospacer
* ********.****** ******* ..

137. spacer 2.10|907200|30|NZ_CP040804|CRISPRCasFinder,CRT,PILER-CR matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 9, identity: 0.7

attatttatccccacgtagccatttcacca	CRISPR spacer
tcggcagatccccaagtagccatttcatca	Protospacer
 . ..  ******* ************.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

54655 : 117412

Wolbachia_phage(21.43%)

transposase,integrase,protease,tRNA

attL 81328:81387|attR 116419:117901

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149561116.1\|54655_55705_+\|integrase	tyrosine-type recombinase/integrase	V9QKF1	Oenococcus_phage	4.4e-33	31.4
WP_002886375.1\|55761_56154_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002886374.1\|56181_56628_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_002886373.1\|56878_57079_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002886372.1\|57088_57559_-	hypothetical protein	NA	NA	NA	NA
WP_149561117.1\|57712_58573_-	DegV family EDD domain-containing protein	NA	NA	NA	NA
WP_002886370.1\|58581_59097_-	hypothetical protein	NA	NA	NA	NA
WP_002886369.1\|59099_59843_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_002886368.1\|59890_61558_-	hypothetical protein	NA	NA	NA	NA
WP_002886359.1\|61844_62246_-	Mini-ribonuclease 3	NA	NA	NA	NA
WP_013989932.1\|62238_63582_-\|tRNA	cysteine--tRNA ligase	F1C979	Terra1_virus	7.4e-49	36.6
WP_002886354.1\|63958_64579_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_149561118.1\|64663_65434_-	SseB family protein	NA	NA	NA	NA
WP_049553514.1\|65430_67668_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_080571439.1\|67871_69125_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.6e-13	25.8
WP_002886347.1\|69269_70526_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_041817177.1\|72220_74671_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	4.0e-125	40.0
WP_002886345.1\|74671_75127_-	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_002886344.1\|75444_75915_+	small multi-drug export protein	NA	NA	NA	NA
WP_002886343.1\|76023_77064_-	elongation factor Ts	NA	NA	NA	NA
WP_002886342.1\|77174_77942_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_002886340.1\|78214_78775_+	peroxiredoxin	NA	NA	NA	NA
WP_149561119.1\|78791_80324_+	alkyl hydroperoxide reductase subunit F	V9VEY6	Lactococcus_phage	2.4e-19	32.4
81328:81387	attL	NA	NA	NA	NA
WP_049529073.1\|81559_82321_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	9.4e-25	29.1
WP_045768432.1\|82340_82727_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_084871101.1\|83221_83767_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_002886332.1\|83854_84283_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002886331.1\|84415_84646_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_149561120.1\|84665_85907_-	aminopeptidase	NA	NA	NA	NA
WP_009732038.1\|91059_91386_+	multidrug efflux SMR transporter	A0A0N9Q9B0	Chrysochromulina_ericina_virus	7.9e-05	36.9
WP_000287814.1\|91549_91996_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	3.5e-11	31.8
WP_000182279.1\|92315_92789_+	hypothetical protein	NA	NA	NA	NA
WP_004182182.1\|92829_94026_+	replication initiation protein	NA	NA	NA	NA
WP_001096844.1\|94028_94415_+	hypothetical protein	NA	NA	NA	NA
WP_000598356.1\|94474_94669_+	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_004182166.1\|94672_95806_+\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	2.6e-31	32.4
WP_002886328.1\|102242_102641_-	transcriptional regulator Spx	NA	NA	NA	NA
WP_002886327.1\|102807_103947_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-119	61.5
WP_002886326.1\|103982_105251_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_002886325.1\|105347_105902_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_002886323.1\|105910_106501_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_002886321.1\|106658_106880_-	hypothetical protein	NA	NA	NA	NA
WP_118058338.1\|107010_108948_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	4.9e-62	29.8
WP_064524956.1\|108997_109303_-	hypothetical protein	NA	NA	NA	NA
WP_002886318.1\|109481_109919_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_084871097.1\|109915_110371_+	DUF3021 domain-containing protein	NA	NA	NA	NA
WP_149561121.1\|110404_112963_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	4.4e-42	23.1
WP_045772359.1\|112955_113315_-	hypothetical protein	NA	NA	NA	NA
WP_002886312.1\|113314_113740_-	arginine repressor	NA	NA	NA	NA
WP_049527581.1\|113897_115589_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.8e-76	32.7
WP_049529073.1\|116650_117412_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	9.4e-25	29.1
116419:117901	attR	NA	NA	NA	NA

DBSCAN-SWA_2

177733 : 189167

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013991341.1\|177733_179215_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.6e-95	40.3
WP_013991340.1\|179396_180497_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_013991339.1\|180499_180877_-	S4 domain-containing protein YaaA	A0A1X9I5V8	Streptococcus_phage	2.0e-23	71.1
WP_013991338.1\|180954_182205_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	2.5e-91	39.9
WP_014632479.1\|182206_183484_+	insulinase family protein	A0A2H4UVM3	Bodo_saltans_virus	1.3e-05	28.7
WP_013991336.1\|183542_184400_+	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_002885640.1\|184412_184955_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_002885731.1\|184967_185798_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.8e-21	32.7
WP_045772057.1\|185773_186616_+	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	1.8e-13	27.9
WP_002885790.1\|186608_187403_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_014632483.1\|187703_188285_+	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	4.6e-24	54.1
WP_014632484.1\|188468_189167_+	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	2.1e-26	68.8

DBSCAN-SWA_3

250402 : 304014

Streptococcus_phage(25.0%)

transposase,protease,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037603748.1\|250402_251428_-\|transposase	IS30-like element IS1139 family transposase	A0A2K9V2S9	Faecalibacterium_phage	7.2e-36	34.9
WP_002887043.1\|251913_252795_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_049527740.1\|252960_253317_+	hypothetical protein	NA	NA	NA	NA
WP_013991282.1\|253349_253688_+	hypothetical protein	NA	NA	NA	NA
WP_041817289.1\|253704_254265_+	TIGR01440 family protein	NA	NA	NA	NA
WP_013991284.1\|254318_255029_-	trehalose operon repressor	NA	NA	NA	NA
WP_014632531.1\|257219_258845_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_013991278.1\|258926_260822_+	endopeptidase	A0A1V0SHG2	Klosneuvirus	1.8e-69	27.8
WP_002887036.1\|260962_263560_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_111686678.1\|263720_264566_+	hypothetical protein	NA	NA	NA	NA
WP_014632533.1\|264591_265569_+	hypothetical protein	NA	NA	NA	NA
WP_049527750.1\|265728_267213_+	threonine synthase	NA	NA	NA	NA
WP_002887029.1\|267273_268560_+	MATE family efflux transporter	NA	NA	NA	NA
WP_002885694.1\|268671_269037_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_102787832.1\|269069_270704_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_002887027.1\|270873_272595_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_002887026.1\|272728_274429_+	acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.5e-62	31.5
WP_002887025.1\|274421_274898_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002887024.1\|274972_275995_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_002887023.1\|276126_277383_-\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	3.9e-76	41.8
WP_149561135.1\|277484_279908_+	penicillin-binding protein	NA	NA	NA	NA
WP_002885744.1\|280266_283848_+	DNA-directed RNA polymerase subunit beta	A0A2P0VMZ3	Tetraselmis_virus	1.7e-39	25.7
WP_149561136.1\|283947_287586_+	DNA-directed RNA polymerase subunit beta'	R4TQM7	Phaeocystis_globosa_virus	2.6e-64	25.7
WP_002887019.1\|287748_288111_+	DUF1033 family protein	NA	NA	NA	NA
WP_038676863.1\|288190_289132_+	Flp pilus assembly complex ATPase component	NA	NA	NA	NA
WP_126405090.1\|289013_290114_+	type II secretion system F family protein	NA	NA	NA	NA
WP_002887016.1\|290110_290437_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_061652423.1\|290405_290825_+	type II secretion system protein	NA	NA	NA	NA
WP_002887015.1\|290856_291087_+	late competence protein ComGE	NA	NA	NA	NA
WP_045769383.1\|291073_291511_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_021144683.1\|291488_291806_+	hypothetical protein	NA	NA	NA	NA
WP_138261573.1\|291850_292807_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_149561137.1\|292863_294057_+	acetate/propionate family kinase	NA	NA	NA	NA
WP_002885716.1\|294307_294505_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_037601483.1\|294516_295173_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013991259.1\|295250_295697_+	hypothetical protein	NA	NA	NA	NA
WP_111686674.1\|295809_296472_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002885846.1\|296498_297269_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	5.6e-33	36.1
WP_014632550.1\|297284_298352_-	glutamyl aminopeptidase	NA	NA	NA	NA
WP_002885838.1\|298451_298736_+	DUF4651 domain-containing protein	NA	NA	NA	NA
WP_002885723.1\|298732_299047_+	thioredoxin family protein	NA	NA	NA	NA
WP_014632552.1\|299050_299575_+	hypothetical protein	NA	NA	NA	NA
WP_002885779.1\|299606_300230_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_045001371.1\|300495_301173_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014632554.1\|301600_301993_+	single-stranded DNA-binding protein	A1EAD1	Streptococcus_phage	7.5e-26	47.0
WP_014632555.1\|302762_303281_+	nucleoside deaminase	NA	NA	NA	NA
WP_045001373.1\|303366_303621_-	hypothetical protein	NA	NA	NA	NA
WP_002885883.1\|303668_303836_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_080610964.1\|303855_304014_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA

DBSCAN-SWA_4

381284 : 403144

Streptococcus_phage(89.47%)

integrase

attL 391238:391251|attR 404146:404159

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149561147.1\|381284_383924_+	DNA polymerase I	S5M8J1	Bacillus_phage	4.4e-53	36.2
WP_004183523.1\|384478_384880_+	hypothetical protein	NA	NA	NA	NA
WP_002884687.1\|384900_385161_+	hypothetical protein	NA	NA	NA	NA
WP_000420681.1\|385672_385987_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	3.7e-52	97.1
WP_000985040.1\|386002_386389_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.5e-58	89.0
WP_002368310.1\|386428_387823_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	6.8e-247	90.9
WP_002390709.1\|387825_387981_+	hypothetical protein	NA	NA	NA	NA
WP_002390710.1\|388028_389204_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	1.9e-218	96.2
WP_001009056.1\|389246_389468_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_002368312.1\|389584_390082_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	9.6e-87	94.5
WP_025186755.1\|390095_390488_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	1.2e-68	99.2
WP_002368314.1\|390471_392919_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	97.8
391238:391251	attL	NA	NA	NA	NA
WP_149561148.1\|392921_395099_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	1.5e-301	83.6
WP_014262668.1\|395095_396097_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	6.7e-180	93.7
WP_041250823.1\|396093_397026_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-147	84.8
WP_076640873.1\|397279_397387_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_014262666.1\|397402_399322_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A2K5B2A5	Erysipelothrix_phage	0.0e+00	92.8
WP_094398252.1\|399412_399607_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	7.4e-19	66.7
WP_014262665.1\|399663_400017_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.7e-51	87.2
WP_000804877.1\|400527_400953_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	7.7e-61	85.0
WP_001224508.1\|400949_401180_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.6e-31	88.2
WP_148473227.1\|401410_401638_-	conjugal transfer protein	NA	NA	NA	NA
WP_000814510.1\|401641_401845_+	excisionase	A0A1S5SF07	Streptococcus_phage	9.8e-30	95.5
WP_001291569.1\|401926_403144_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	7.3e-213	90.1
404146:404159	attR	NA	NA	NA	NA

DBSCAN-SWA_5

675478 : 681780

Streptococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004183097.1\|675478_676378_+	SPFH domain-containing protein	A0A1V0SL90	Klosneuvirus	1.8e-35	32.8
WP_004183092.1\|676421_676817_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_004183090.1\|676932_677826_+	ROK family protein	NA	NA	NA	NA
WP_014632766.1\|677980_679075_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	9.6e-172	81.3
WP_002884484.1\|679087_679645_+	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	2.0e-56	59.6
WP_110981110.1\|679663_680842_+	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	5.1e-179	79.8
WP_149561514.1\|680897_681392_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.6e-36	46.3
WP_037611955.1\|681426_681780_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	2.8e-40	67.5

DBSCAN-SWA_6

840611 : 851525

Streptococcus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004182927.1\|840611_841727_+	glycerate kinase	W6LM47	Streptococcus_phage	6.0e-137	86.3
WP_002885945.1\|841766_842222_-	YueI family protein	W6LLD2	Streptococcus_phage	2.9e-66	82.8
WP_002886048.1\|842428_843733_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.4e-246	99.5
WP_002886071.1\|843885_844071_-	hypothetical protein	W6LMT3	Streptococcus_phage	1.9e-24	93.4
WP_004182926.1\|844245_846432_-	LTA synthase family protein	W6LM83	Streptococcus_phage	0.0e+00	95.3
WP_004182922.1\|846593_847757_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.7e-211	94.6
WP_004182921.1\|847753_848431_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	4.3e-114	92.9
WP_004182919.1\|848420_849278_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_004182918.1\|849290_850358_+	3-dehydroquinate synthase	NA	NA	NA	NA
WP_149561238.1\|850358_851525_+	chorismate synthase	A0A291AU41	Pandoravirus	2.1e-39	34.7

DBSCAN-SWA_7

860987 : 871610

Streptococcus_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149561242.1\|860987_862343_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	9.0e-204	79.2
WP_000873143.1\|862732_862903_+	hypothetical protein	A0A1X9I6E4	Streptococcus_phage	3.7e-22	98.2
WP_000417519.1\|863288_864506_+	macrolide efflux MFS transporter Mef(A)	A0A2K5B2B5	Erysipelothrix_phage	5.1e-198	90.6
WP_000420313.1\|864625_866089_+	ABC-F type ribosomal protection protein Msr(D)	A0A1B0RXA0	Streptococcus_phage	3.7e-251	97.3
WP_001072467.1\|866206_866506_-	hypothetical protein	A0A1B0RX98	Streptococcus_phage	1.8e-48	96.0
WP_000567222.1\|866492_866861_-	hypothetical protein	A0A1B0RXA8	Streptococcus_phage	1.1e-58	97.5
WP_000806926.1\|866873_867209_-	hypothetical protein	NA	NA	NA	NA
WP_001813542.1\|867205_867451_-	hypothetical protein	A0A1B0RXA7	Streptococcus_phage	2.6e-37	98.8
WP_001813543.1\|867447_867636_-	hypothetical protein	Q6DMX4	Streptococcus_phage	1.5e-13	90.7
WP_134954491.1\|868454_868814_+	ZIP family metal transporter	NA	NA	NA	NA
WP_008534149.1\|868814_869162_+	ZIP family metal transporter	NA	NA	NA	NA
WP_002890511.1\|869176_869539_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002890512.1\|869522_871610_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.2e-114	36.1

DBSCAN-SWA_8

877052 : 897191

Lactococcus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004182864.1\|877052_877886_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_149561248.1\|877926_878562_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_045768934.1\|879037_880741_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_013990678.1\|880981_881455_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	2.0e-17	33.3
WP_149561249.1\|881577_882990_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-198	75.7
WP_045768932.1\|883042_884809_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_014633356.1\|884980_885523_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_045768931.1\|885805_886645_+	DUF4300 family protein	NA	NA	NA	NA
WP_013990861.1\|886694_887444_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_045001837.1\|887613_888657_+	iron ABC transporter permease	NA	NA	NA	NA
WP_073687115.1\|888661_889417_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-16	31.7
WP_002885936.1\|889437_890454_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080931939.1\|890440_891124_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_045768929.1\|891220_891814_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_037603931.1\|891969_892551_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_037603930.1\|892658_892970_+	hypothetical protein	NA	NA	NA	NA
WP_045768928.1\|893061_893811_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_045771842.1\|894057_894255_-	hypothetical protein	NA	NA	NA	NA
WP_045771841.1\|894354_894774_-	DUF3642 domain-containing protein	NA	NA	NA	NA
WP_073686988.1\|894948_895341_+	YbgA family protein	NA	NA	NA	NA
WP_073686987.1\|895337_895700_+	hypothetical protein	NA	NA	NA	NA
WP_073686986.1\|895712_896090_+	hypothetical protein	NA	NA	NA	NA
WP_073686985.1\|896579_897191_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_9

1352732 : 1363397

Streptococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002883901.1\|1352732_1354295_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.4e-19	30.3
WP_004182429.1\|1354584_1355169_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004182428.1\|1355452_1356472_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	8.7e-26	24.6
WP_004182427.1\|1356633_1356915_-	hypothetical protein	M1PG86	Streptococcus_phage	4.7e-22	57.3
WP_004182426.1\|1356892_1357270_-	hypothetical protein	A0A1B0RXA8	Streptococcus_phage	1.7e-19	44.2
WP_004182425.1\|1357266_1358682_-	Y-family DNA polymerase	M1Q231	Streptococcus_phage	1.2e-195	71.1
WP_004182424.1\|1358795_1359647_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002891086.1\|1359659_1360289_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-32	40.2
WP_002891087.1\|1360297_1360939_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002891088.1\|1361138_1361471_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_045768647.1\|1361588_1363397_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	7.3e-100	39.1

DBSCAN-SWA_10

1542507 : 1593546

Staphylococcus_phage(20.0%)

transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149561184.1\|1542507_1543494_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.1e-57	40.1
WP_002885361.1\|1543826_1544036_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_060971969.1\|1544041_1544356_-	hypothetical protein	NA	NA	NA	NA
WP_149561397.1\|1544847_1545450_-	nitroreductase family protein	NA	NA	NA	NA
WP_149561398.1\|1545579_1546440_-	VOC family protein	NA	NA	NA	NA
WP_049528026.1\|1546572_1547022_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_049528023.1\|1547201_1548065_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_149561399.1\|1548051_1549344_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_045772302.1\|1549572_1550205_-	nitroreductase family protein	NA	NA	NA	NA
WP_080610659.1\|1550299_1550986_-	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_073689673.1\|1551084_1551927_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.9e-57	42.2
WP_073689685.1\|1552016_1553102_-	hypothetical protein	NA	NA	NA	NA
WP_149561400.1\|1553674_1556692_-	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	1.6e-144	32.8
WP_049554067.1\|1556695_1558600_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_014634731.1\|1558711_1559758_-	galactose mutarotase	NA	NA	NA	NA
WP_014632921.1\|1559827_1560829_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.7e-48	37.7
WP_070476613.1\|1560858_1562340_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA
WP_149561401.1\|1562359_1563526_-	galactokinase	NA	NA	NA	NA
WP_045772297.1\|1563666_1564692_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_049528007.1\|1564743_1566354_-	alpha-glucosidase	NA	NA	NA	NA
WP_149561402.1\|1566524_1568024_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	5.1e-208	76.3
WP_149561403.1\|1568153_1569458_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	3.3e-09	24.6
WP_045772294.1\|1569454_1570108_-	response regulator transcription factor	NA	NA	NA	NA
WP_149561404.1\|1570179_1571556_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_002885283.1\|1571569_1572202_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-20	31.5
WP_149561405.1\|1572217_1573477_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_149561406.1\|1573784_1575269_+	DUF1846 family protein	NA	NA	NA	NA
WP_045768432.1\|1575576_1575963_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_049529073.1\|1575982_1576744_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	9.4e-25	29.1
WP_149561407.1\|1578384_1578729_-	hypothetical protein	NA	NA	NA	NA
WP_149561408.1\|1579031_1580123_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_149561409.1\|1580266_1581250_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013990335.1\|1581264_1581639_-	PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM	NA	NA	NA	NA
WP_138261629.1\|1581642_1582218_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_149561410.1\|1582249_1583239_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_118057959.1\|1583565_1584831_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_149561411.1\|1585196_1588697_+	glucosyl transferase	NA	NA	NA	NA
WP_045768470.1\|1588842_1588959_-	hypothetical protein	NA	NA	NA	NA
WP_037602257.1\|1588936_1589257_-	hypothetical protein	NA	NA	NA	NA
WP_149561412.1\|1589390_1591406_-	M13 family metallopeptidase	E3T4I7	Cafeteria_roenbergensis_virus	6.5e-73	29.4
WP_149561413.1\|1591613_1593062_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.1e-207	76.1
WP_149561414.1\|1593216_1593546_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_11

2007739 : 2013215

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111686476.1\|2007739_2009059_-	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	1.4e-121	52.1
WP_045771735.1\|2009113_2009740_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.5e-68	61.8
WP_002883742.1\|2009841_2010768_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	9.4e-144	81.8
WP_002886636.1\|2010946_2011606_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	6.6e-67	59.6
WP_002883761.1\|2011740_2012451_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.3e-15	26.9
WP_002886634.1\|2012450_2013215_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-15	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040803

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9858 : 60974

Listeria_phage(28.57%)

transposase,bacteriocin,holin,integrase

attL 25784:25800|attR 51297:51313

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149561098.1\|9858_9993_-\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_149561021.1\|10589_11429_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_149561022.1\|12829_18346_-	DEAD/DEAH box helicase family protein	I3PUW5	Vibrio_phage	1.2e-201	31.2
WP_149561023.1\|18491_18935_-	hypothetical protein	NA	NA	NA	NA
WP_149561024.1\|18950_20498_-	hypothetical protein	A8ATM0	Listeria_phage	2.5e-56	32.2
WP_149561025.1\|20556_21111_-	hypothetical protein	A8ATL9	Listeria_phage	1.1e-11	44.0
WP_149561026.1\|21126_21951_-	Flp pilus assembly complex ATPase component	NA	NA	NA	NA
WP_149561027.1\|21940_23404_-	hypothetical protein	NA	NA	NA	NA
WP_149561028.1\|23541_24114_-	GTP pyrophosphokinase	Q0H269	Geobacillus_phage	1.9e-14	30.4
WP_070839465.1\|24145_25486_-	DUF3854 domain-containing protein	NA	NA	NA	NA
25784:25800	attL	NA	NA	NA	NA
WP_118172410.1\|27147_27993_+	ParA family protein	NA	NA	NA	NA
WP_045772559.1\|27976_28501_+	hypothetical protein	NA	NA	NA	NA
WP_045772560.1\|29189_30653_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA
WP_045772561.1\|30877_31369_+\|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	5.5e-18	40.5
WP_045772562.1\|31606_32590_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_045772563.1\|32707_33613_+	streptodornase	NA	NA	NA	NA
WP_021151495.1\|34044_35376_+	hypothetical protein	NA	NA	NA	NA
WP_149561029.1\|35450_35939_+	hypothetical protein	NA	NA	NA	NA
WP_149561099.1\|36505_38989_+	hypothetical protein	NA	NA	NA	NA
WP_149561030.1\|39028_39337_-	hypothetical protein	NA	NA	NA	NA
WP_149561100.1\|40144_41146_+	hypothetical protein	NA	NA	NA	NA
WP_148513013.1\|41163_41526_+	hypothetical protein	NA	NA	NA	NA
WP_149561031.1\|41666_42464_+	thioredoxin family protein	NA	NA	NA	NA
WP_002886742.1\|42703_43465_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	9.4e-25	29.1
WP_045768432.1\|43484_43871_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149561032.1\|43935_44571_+	hypothetical protein	NA	NA	NA	NA
WP_149561033.1\|44564_45233_+	hypothetical protein	NA	NA	NA	NA
WP_073686426.1\|45722_45881_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561034.1\|45930_46089_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561035.1\|46139_46298_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561034.1\|46348_46507_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561034.1\|46557_46716_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561034.1\|46766_46925_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_149561034.1\|46975_47134_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_070437622.1\|49083_49860_+	hypothetical protein	NA	NA	NA	NA
WP_070437619.1\|49856_51587_+	hypothetical protein	NA	NA	NA	NA
51297:51313	attR	NA	NA	NA	NA
WP_070437614.1\|51612_52455_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-19	30.8
WP_070437611.1\|52454_53174_+	ABC transporter permease	NA	NA	NA	NA
WP_149561036.1\|53173_54268_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_149561101.1\|54260_56780_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_149561037.1\|56797_57874_+	hypothetical protein	NA	NA	NA	NA
WP_149561038.1\|57874_58402_+	hypothetical protein	NA	NA	NA	NA
WP_149561039.1\|58379_60059_+	hypothetical protein	NA	NA	NA	NA
WP_149561040.1\|60065_60974_+\|bacteriocin	bacteriocin biosynthesis protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040804

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040803

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection