CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038437	Halomonas sp. Y2R2 chromosome, complete genome	3 crisprs	DinG,cas3,DEDDh,csa3,WYL	0	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP038437_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038437_1

59776-59906

Orphan

Consensus_repeat	Method
GCTAAAGGCGGCCCCAATGCCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP038437_1

>merge|NZ_CP038437|1|59776-59906|CRISPRCasFinder
GCTAAAGGCGACCTCAATGCCAGCGGCGGCCCAGGCGCTAAAGGCGGCCCCAATGCCAGTGGCGGCCCGAGTGCTAAAGGTGGCCCCAATGCCAGCGGTGGCCCGGGTGCTAAAGGTGGCCCCAATGCCAG

>NZ_CP038437|1|1|59776-59906|CRISPRCasFinder
GCTAAAGGCGACCTCAATGCCAG	CGGCGGCCCAGGCGCTAAAGGCGGCCCCAAT
GCCAGTGGCGGCCCGAGTGCTAA	AGGTGGCCCCAATGCCAGCGGTGGCCCGGGT
GCTAAAGGTGGCCCCAATGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038437.1\|WP_149282489.1\|69634_70375_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|179108
NZ_CP038437.1\|WP_149282460.1\|55456_55795_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NZ_CP038437.1\|WP_149282483.1\|67352_67646_+\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|226219
NZ_CP038437.1\|WP_149282477.1\|64417_65455_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NZ_CP038437.1\|WP_149282462.1\|55924_56158_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|378970
NZ_CP038437.1\|WP_149282481.1\|66620_67304_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP038437.1\|WP_149282485.1\|68246_68756_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038437.1\|WP_149282479.1\|65451_66543_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NZ_CP038437.1\|WP_149282464.1\|56259_56562_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_CP038437.1\|WP_149282467.1\|57159_57936_-\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NZ_CP038437.1\|WP_149282450.1\|51283_52789_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP038437.1\|WP_149282457.1\|53996_55247_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NZ_CP038437.1\|WP_149282487.1\|68837_69611_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP038437.1\|WP_149282471.1\|60187_61246_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235440
NZ_CP038437.1\|WP_149282453.1\|52884_53199_-\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|377337
NZ_CP038437.1\|WP_149282455.1\|53606_53945_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP038437.1\|WP_149282473.1\|61427_62324_+\|AEC-family-transporter	unknown	unknown	gnl\|CDD\|223751
NZ_CP038437.1\|WP_149282469.1\|58121_59048_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP038437.1\|WP_149282465.1\|56670_57075_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP038437.1\|WP_149282475.1\|62424_62877_+\|copper-resistance-protein-NlpE	unknown	unknown	gnl\|CDD\|377235

Protein	Function_ID	Function_description	E-value
NZ_CP038437.1\|WP_149282489.1\|69634_70375_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|179108	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated.	3.63572e-140
NZ_CP038437.1\|WP_149282460.1\|55456_55795_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	7.56377e-55
NZ_CP038437.1\|WP_149282483.1\|67352_67646_+\|cysteine-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.18822e-23
NZ_CP038437.1\|WP_149282477.1\|64417_65455_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NZ_CP038437.1\|WP_149282462.1\|55924_56158_-\|DUF3820-family-protein	gnl\|CDD\|378970	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor. QSregVF_b is a family of short Pseudomonas proteins that are potential virulence factors. The structure of UniProtKB:Q9HY15 a secreted protein has been solved and deposited as Structure 3npd, from pfam13652. It is predicted that these two adjacent proteins form a single transcriptional unit based on the prediction that together they interact with their adjacent protein PotD, which is the putrescine-binding periplasmic protein in the polyamine uptake system comprising PotABCD. These two adjacent proteins are predicted to be quroum-sensing-regulated virulence factors.	7.94593e-37
NZ_CP038437.1\|WP_149282481.1\|66620_67304_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	5.04353e-31
NZ_CP038437.1\|WP_149282479.1\|65451_66543_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	1.00722e-138
NZ_CP038437.1\|WP_149282464.1\|56259_56562_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	3.01728e-22
NZ_CP038437.1\|WP_149282467.1\|57159_57936_-\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.26855e-117
NZ_CP038437.1\|WP_149282450.1\|51283_52789_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP038437.1\|WP_149282457.1\|53996_55247_+\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	0
NZ_CP038437.1\|WP_149282487.1\|68837_69611_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	1.53923e-180
NZ_CP038437.1\|WP_149282471.1\|60187_61246_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP038437.1\|WP_149282453.1\|52884_53199_-\|accessory-factor-UbiK-family-protein	gnl\|CDD\|377337	pfam04380, BMFP, Membrane fusogenic activity. BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.	7.03174e-18
NZ_CP038437.1\|WP_149282455.1\|53606_53945_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	8.30709e-56
NZ_CP038437.1\|WP_149282473.1\|61427_62324_+\|AEC-family-transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.47341e-33
NZ_CP038437.1\|WP_149282469.1\|58121_59048_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	6.89034e-93
NZ_CP038437.1\|WP_149282465.1\|56670_57075_+\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	1.16195e-22
NZ_CP038437.1\|WP_149282475.1\|62424_62877_+\|copper-resistance-protein-NlpE	gnl\|CDD\|377235	pfam04170, NlpE, NlpE N-terminal domain. This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. In Escherichia coli and Salmonella typhi, NlpE is also known to confer copper tolerance in copper-sensitive strains of Escherichia coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes.	1.57542e-10

>NZ_CP038437.1|WP_149282469.1|58121_59048_+|LysR-family-transcriptional-regulator
MRYTLRQLEVFVAIAQHENVSQAARALSLSQSAASTALAELERQFDCQLLDRIGKRLKLNALGFQLLPKAVALLDRAEEVEELLRGQQGIGNLEVGATLTIGNYLATLLISDFMQQHPGSRVRLEVRNTRAIIDRVRHHQLDLGLIEGQCEEDDVIAQPWVEDDLVVFCAPNHPLAGQGPIELDRLLREAWIMREEGSGTRMTLEQAARHRRGRFNTLLELEHTEGIKRAVESGLGIGCVSRLALRDAFRRGSLVPIPTPELDLCRQFTFIWHRHKYLTAGMREFLRQCRQMTEGVRRSDEIDLPQMP
>NZ_CP038437.1|WP_149282467.1|57159_57936_-|ferredoxin--NADP-reductase
MSKFALEEVLSVHHWNDSLFTFRTTRDRSLRFKNGQFVMIGLEVAGKPLMRAYSIASPNYEDHLEFFSIKVPDGPLTSRLQHLKVGDQIMVSRKPTGTLVCDDLLPGRNLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLVHGVRTVSELAYADFITKELPAHEYLGEEIAEKLVYYPTVTREDFHTMGRLTDHIRSGKLTTDAGLPAIDPKQDRAMICGSPAMLDETSALLDELGFNISPRMGEPGDYVIERAFVEK
>NZ_CP038437.1|WP_149282465.1|56670_57075_+|VOC-family-protein
MSRPAPLNGIRHIALQVQDLEACERFYVDFLGMRILRRAHADLVYLTLGNDNFSLSRAKEPTGGDPQRLDHFGFVVDQREDVDAWHDYLAAAGVHITRGPHDHADGGRSFYCLDPDGNSVQPLFHPSVSGQRLV
>NZ_CP038437.1|WP_149282464.1|56259_56562_-|antibiotic-biosynthesis-monooxygenase
MYCIIVRTQLKPGNRESFLAAMLENAQASVREEPGCLVFDVIEDRETPDCFHLYEVYQDEQALAAHKETPHYRASRQIVTPLIDSQSVTRADVLALNPER
>NZ_CP038437.1|WP_149282462.1|55924_56158_-|DUF3820-family-protein
MKPEDLERLVALRMPFGKYEGTLIADLPGPYLNWFAREGFPQGEIGRLLAIMHEIDHNGLSYLLEPLRRTAGITTHS
>NZ_CP038437.1|WP_149282460.1|55456_55795_+|P-II-family-nitrogen-regulator
MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKLEVAVDDGMVDQVIDAITSVANTGKIGDGKIFVTALEKVIRIRTGEVDKDAV
>NZ_CP038437.1|WP_149282457.1|53996_55247_+|ammonium-transporter
MVDISELSYALDTFYFLVCGALVMWMAAGFAMLEAGLVRAKNTAEILTKNIVLFAIACTMYLLIGYYIMYSSDAGGFLPSLGFLLGDENTVDAVLAGGEDAPYYSARADFFFQVVFVATAMSIVSGAVAERMKLWAFLAFAVVMTAFIYPVSGYWTWGGGWLSELGFSDYAGSGIVHLAGAAAALSGVLILGPRRGKYGKDGAIYAIPGANLPLATLGTFILWLGWFGFNGGSELKVSDVTSANHMAQVLVNTNAAAAGGVLAALVLAKVLFRKADLTMALNGAIAGLVSITADPLSPSALSATLIGGLGGLLVVLSIISLDKLRLDDPVGAISAHGVAGIWGVLAVPLNNADATFGAQLIGIAGIFVWVFVASAIVWLIIKAVMGVRVSEEEEYEGVDLAECGLEAYPEFNVAKK
>NZ_CP038437.1|WP_149282455.1|53606_53945_+|P-II-family-nitrogen-regulator
MKLITAIIKPFKLDDVREALADNGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKVEVAIDESRLDTVLEAICNAANSGKIGDGKVFVTALEDVIRIRTGERGSDAV
>NZ_CP038437.1|WP_149282453.1|52884_53199_-|accessory-factor-UbiK-family-protein
MVTHERISRLAQQIGERLQGASQAPEDIQKGVQQVVKGAFDRLELVSREDFDILMDVLQRTRSRVEALEKQVAALETLIEQGANSASTDGAKEKGTTQIGEQES
>NZ_CP038437.1|WP_149282450.1|51283_52789_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MTLAVISTRAGLGLDAPEVQVEVHLANGLPGMTLVGLPETAVKESRERVRSALTTSGFDFPLRRITLNLAPADLPKEGGRFDLPIALGLLVASGQLPNEALNGLECVGELALDGHLRPVTGILPFALATRRAGKRLIVPVDNADEASLVDGLEILPARHLLEVVAHLNGQSLIPSHVFHGAGTPQAETLDLADVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTLLASRLPGILPPLSKDEALEVAAVRSVTGLPLEQDWGRRPFRAPHHTASAVALVGGGGKPRPGEISLAHLGVLFLDELPEFSRHVLEVMREPMESGEIHIARASHERRYPARFQLVAAMNPCPCGHLGDPRQSCVCTAAQIQRYQSRLSAPLLDRIDLQVEVPAIPAAQLTSTQQGESSHTVRQRVQAARERQQERGGLNAQLSGRALDDACGLKAEDRAWLAESLERLKLSARAYHRILRVALTLADLSELKYPGREQLIEAIGYRQLDRMLKRG
>NZ_CP038437.1|WP_149282471.1|60187_61246_-|histidinol-phosphate-transaminase
MSQLWSPAVRELTPYIPGEQPRERLIKLNTNENPYPPAPGVEKVLREFSADHLRRYPDPTSNALRAALAKALGTDVAHVFVGNGSDEVLALAFQAFFRQDKPLAMPDISYSFYPVYCRMYAIESQSFPLDDEWRVDLDALAASDNGGIIFANPNAPTGHGHGRAAIEALLQKVQDRVVLVDEAYVDFGGESAVPLVDKYPNLLVTGTFSKSRSLAGMRLGYAVGSPELVEGLTRVKDSFNSYPVDALASAIGIAALEDVDHFEATQQAVITTRERTSQQLSKLGFKVLPSQTNFVLASHPEQDAAQLFLGLRERGVLVRHFNTATLRDWLRITIGTDDEMDSLIEVLSELCR
>NZ_CP038437.1|WP_149282473.1|61427_62324_+|AEC-family-transporter
MTASILATLLPVFLISGAGTLYGRFRSPDIRVLNTLNMELFVPMLAFVVLADRQAPLAEYTGLAISGVIVVLGSGLVVWPVVKLLKLEPKTFIPPMMFNNSGNMGIPLLILAFGDKALPAAVVLFIVEMLLHFSVGLYMLSPHTPLWRLLRMPIVLASIAGLVCNLSGVELPSWLLEALHMLGGVCVPLLLFALGVRMLEIDFSDWRSGLLGAVLCPLSGLVLAWPLIVLFELSGLQAASLWVFAALPPAVLNYLVSEQYRQEPHKVASLVLIGNLGSLVVMPIVLGLVFTHVMPPAG
>NZ_CP038437.1|WP_149282475.1|62424_62877_+|copper-resistance-protein-NlpE
MRLRTLLVGSAMLALLAGCASSGSDDTESKDAMQAQTATYQGTLPCRNCDGIDLTVDLKGTEASAPTERTFDLTASYRNHPQNPADETYNGNWEVLSGTADDPSATVYELTPNGEGQTYYFMRVDPRTLELIDPDRRRFQNNSMLQLTRK
>NZ_CP038437.1|WP_149282477.1|64417_65455_+|selenide,-water-dikinase-SelD
MSAIRLTQYSHGAGCGCKIAPDVLDGILAQAGPGAGHAQMIVGNQGREDAAVFDLGDGRGMIATTDFFMPIVDDPFDFGRIAATNAISDVYAMGGTPVMALGILGWPLDKLSAEIAGDVMAGAQAVCRELGLALAGGHSIDSPEPIFGLSVNGLVDLQHLKLNKGAQIGDLLYLTKPLGVGLLTTAEKRGLLENGHQNLARETMLKSNRIGAELARIKGVNAMTDVTGFGLAGHLSEVCAASGVAARIDFRRLPRLAEAESYRRQGAVPGGTGRNRTALGAALPDMDEAHWQWLCDPQTSGGLLITVHPSWQDDVERVGRDHGIELVPFGEIIKAKGEALIEVLG
>NZ_CP038437.1|WP_149282479.1|65451_66543_+|tRNA-2-selenouridine(34)-synthase-MnmH
MKLPLVPADLDLLREGRTLIDVRAPVEFAQGSLPGAVNLPLMDNEERRLVGIAYKEHGQDAAIALGNQLVAGAIKEARVEAWRSQLEKTPDAIIYCFRGGLRSQISQQWLHEAGILRPRIEGGWKAMRQGLLERVDAAAGQPLLVVGGLTGCAKTALVQALDEGLDLEGCARHKGSAFGRHPLIAPSQIDFEHAMGLRLLSLSGPLVVEDESRHIGTANIPLEFWHSMEAAPRVRVEMPLDWRLRQIHKDYIDDLWAIYRQQFGEWLGWALMRKQLSSALGRLKKRLGSARLARFQRLQQLAFREHERGNRQAHEAWLAPLLTEYYDPMYRYQLEKHAEQHFLHVGDWDSCLDAARQWCEENR
>NZ_CP038437.1|WP_149282481.1|66620_67304_-|type-1-glutamine-amidotransferase
MHFHLLQHQPHQGPARIADWLTSMGHSFTIFHLYDGELPPRPADCDALIILDDHENSQEQPWSRAENKLIDQMLDGQKPLLGLGTGALRIAAALGAPVGNGSRAEAGWYKIHLADDSPFDLPDDFTTLLWHRQVFGLPDDALPLGGSESSPVLGYSWDAGRVVGLCCLLHLHGSSLSEYLDNTPLPEGHDTSSAVQSPGAILAETRILNDQASLLDRVLTQWLDNAH
>NZ_CP038437.1|WP_149282483.1|67352_67646_+|cysteine-methyltransferase
MNPLVREQILTIIASIPEGRVTSYGRIAKMTDGATARMVARALRDLPSGHELPWFRVVTSSRKLADHSGADEQRRRLIDEGIAFDVRGRISVERFWP
>NZ_CP038437.1|WP_149282485.1|68246_68756_-|hypothetical-protein
MPTSTRIVAILLSALLLAPTGAMAQKQDQPIRMELDHVLVQTSLYTQHYDPDPDHNNHQRLISIELHNPQHWLAGAGWFKNSYDQPTWYWYAGREFPFWQPSNNTLVRGKLTGGLLRGYKDEYRDKIPFNHSGIAPAILPSIGVQWGRVESDLILFGSAGLMLTGGMSF
>NZ_CP038437.1|WP_149282487.1|68837_69611_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MALSKRIIPCLDVDAGRVVKGVNFVGIRDAGDPVEIAQRYNQQGADEITFLDITASHEDRATTVEMVERIAGEVFIPLTVGGGIRTCDDIRTMLNAGADKVSINTAAVTNPEFVREAAERFGSQCIVVAIDAKKVSAEGETPRWEIFTHGGRRPTGLDAVEWARKMVDYGAGELLLTSMDRDGTKAGFDLGVTRAISDAVPVPVIASGGVGNLDHLVEGVIEGHADAVLAASIFHFAEHTIPEAKRYMADKGITMRL
>NZ_CP038437.1|WP_149282489.1|69634_70375_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MLVIPAIDLKDGKCVRLKQGRMDDATTYGDDPVAMAARWVDAGARRLHLVDLNGAFEGRPVNGEAVTAIARRYPDLPIQIGGGIRSAETIEHYLNAGVSQVIIGTKAVKEPEFVGEMCRLFPGHVIVGLDAKDGRVATDGWAEVSEVLAVDLAKRFANDGVSSIVYTDISRDGMMNGVNVEATAQLAREGGLPVIASGGVTNLDDLRALIAAGEPGILGAITGRAIYEGSLDVAEGQRLCDELTAG

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Crispr_ID: NZ_CP038437_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038437_2

2621465-2621565

Orphan

Consensus_repeat	Method
GCCTCAAGTACCCTGGGCTTGTCTTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP038437_2

>merge|NZ_CP038437|2|2621465-2621565|CRISPRCasFinder
GCCTCAAGTACCCTGGGCTTGTCTTAAAGACCAAGATTTAAAAGACCAAGATGGGTCTCAGAGACTGAGGCTGGCCTCAAGCACCCTGGGCTTGTCTTAAA

>NZ_CP038437|2|2|2621465-2621565|CRISPRCasFinder
GCCTCAAGTACCCTGGGCTTGTCTTAAA	GACCAAGATTTAAAAGACCAAGATGGGTCTCAGAGACTGAGGCTG
GCCTCAAGCACCCTGGGCTTGTCTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038437.1\|WP_149285118.1\|2626222_2626702_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP038437.1\|WP_149285104.1\|2609952_2610501_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP038437.1\|WP_149285111.1\|2617172_2617931_+\|DeoR/GlpR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182827
NZ_CP038437.1\|WP_149285122.1\|2630165_2630999_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180446
NZ_CP038437.1\|WP_149285115.1\|2623318_2624725_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180994
NZ_CP038437.1\|WP_149285119.1\|2626793_2627723_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176157
NZ_CP038437.1\|WP_149285107.1\|2613209_2614253_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP038437.1\|WP_149285117.1\|2625820_2626135_-\|monooxygenase	unknown	unknown	unknown
NZ_CP038437.1\|WP_149285110.1\|2616017_2616476_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP038437.1\|WP_149285116.1\|2625260_2625743_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP038437.1\|WP_149285121.1\|2628215_2628602_+\|tautomerase-family-protein	unknown	unknown	gnl\|CDD\|379645
NZ_CP038437.1\|WP_149285109.1\|2615011_2615800_+\|MetQ/NlpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|224381
NZ_CP038437.1\|WP_149285112.1\|2618224_2619730_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP038437.1\|WP_149285108.1\|2614233_2614887_+\|methionine-ABC-transporter-permease-MetI	unknown	unknown	gnl\|CDD\|224922
NZ_CP038437.1\|WP_149285120.1\|2627852_2628170_+\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NZ_CP038437.1\|WP_149285113.1\|2619758_2621459_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223651
NZ_CP038437.1\|WP_149285114.1\|2621679_2623182_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143430
NZ_CP038437.1\|WP_149285105.1\|2610606_2611938_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP038437.1\|WP_149287170.1\|2629038_2629974_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|377694
NZ_CP038437.1\|WP_149285106.1\|2612041_2612671_-\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP038437.1\|WP_149285118.1\|2626222_2626702_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.66186e-16
NZ_CP038437.1\|WP_149285104.1\|2609952_2610501_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	6.78261e-92
NZ_CP038437.1\|WP_149285111.1\|2617172_2617931_+\|DeoR/GlpR-family-transcriptional-regulator	gnl\|CDD\|182827	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator.	5.10498e-115
NZ_CP038437.1\|WP_149285115.1\|2623318_2624725_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP038437.1\|WP_149285119.1\|2626793_2627723_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176157	cd08468, PBP2_Pa0477, The C-terminal substrate biniding domain of an uncharacterized LysR-like transcriptional regulator Pa0477 related to DntR, contains the type 2 periplasmic binding fold. LysR-type transcriptional regulator Pa0477 is related to DntR, which controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.41807e-85
NZ_CP038437.1\|WP_149285107.1\|2613209_2614253_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP038437.1\|WP_149285122.1\|2630165_2630999_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180446	PRK06180, PRK06180, short chain dehydrogenase; Provisional.	0
NZ_CP038437.1\|WP_149285110.1\|2616017_2616476_+\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	2.0292e-67
NZ_CP038437.1\|WP_149285116.1\|2625260_2625743_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.53954e-07
NZ_CP038437.1\|WP_149285121.1\|2628215_2628602_+\|tautomerase-family-protein	gnl\|CDD\|379645	pfam14552, Tautomerase_2, Tautomerase enzyme.	2.17921e-32
NZ_CP038437.1\|WP_149285109.1\|2615011_2615800_+\|MetQ/NlpA-family-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	4.85122e-110
NZ_CP038437.1\|WP_149285112.1\|2618224_2619730_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP038437.1\|WP_149285108.1\|2614233_2614887_+\|methionine-ABC-transporter-permease-MetI	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.13405e-101
NZ_CP038437.1\|WP_149285120.1\|2627852_2628170_+\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	5.18576e-27
NZ_CP038437.1\|WP_149285113.1\|2619758_2621459_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.16898e-86
NZ_CP038437.1\|WP_149285114.1\|2621679_2623182_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143430	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.	0
NZ_CP038437.1\|WP_149285105.1\|2610606_2611938_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.53252e-176
NZ_CP038437.1\|WP_149287170.1\|2629038_2629974_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	4.81984e-56
NZ_CP038437.1\|WP_149285106.1\|2612041_2612671_-\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	7.6849e-116

>NZ_CP038437.1|WP_149285113.1|2619758_2621459_+|FAD-dependent-oxidoreductase
MPLDRSPVVQRCENESLTSPQHTSTAHVSTLRDTHLQHLANDRFDVLIVGAGINGACAAAALASKGVSVALIDRSDFASATSQQSSNLAWGGIKYMESFDFSLVRKLCKSRNHLVRSFPSSVKEIRFLTTVSKGFRHHPGMLWAGSWLYWLMGNGQTRMPRFLRISDIHKRASIVDTREAHGGVEYSDAYLYDNDARFVFQFVQRAMHANARVANYVESLGAEHHDNGWKVRVRDVIHDRPFEIQARVLINAAGPWVDEHNRLSGETTEHHHAFSKGIHLIVPKLTDDSHVLAFFADDGRLFFVIPMGNRTCIGTTDTRVEHPHVDIDADDINFVLDNINKRLALARPLNRDDIIATRCGVRPLAVSKSNGKERDFLQLSRKHAIDTNRQHAHISIFGGKLTDCINVGEEILAEVQKLGIDVPYPESRWYGEPDEQEKQEFLRHAMEIGLDDLTPIDASEPLSQRLWRRYANDAHGLLESIVRDPRQAEPLIEGSEYLRCELQLAREQEMVTRLEDLLRRRDRISLVVSQEQLRHSPGLHEACEILFGDQAEARYAEYFGTSAVVT
>NZ_CP038437.1|WP_149285112.1|2618224_2619730_+|glycerol-kinase-GlpK
MSDKYILSFDQGTTSCRAILFDSDAQIVGIAQKEFTQHFPQPGYVEHDAMEIWGSQMGVAREVLETHGIKPSEVAAIGITNQRETTVIWDRQSGKPIHHAIVWQDRRTAPLCDELKDQGLEDHIRATTGLIVDAYFSATKIRWILDHVEGAQQRAERGELLFGTMDSWLVWNLTRGQRHVTDVTNASRTMLFDIHQLDWDQRLLDALNIPRCMLPEVRPSSEIYGTTGAEMFGGAQIPIAGIAGDQQAALFGQACFEKGMVKNTYGTGCFLLMNTGDQPVPSRSGLLTTIAWGLDGKITYALEGSIFIAGAAIQWLRDELKLIDSAEDSEYYAGKVKDSGGVYVVPAFAGLGAPYWDMYARGAIFGLTRGSSKEHITRATLDALAYQTRDIIDAMQADSGITLKSLRVDGGAVANNVMMQFQADMLGVEVDRPIITESTALGAAYLAGIAVGMWTQAELATKGEIERTFSPVMSSKDREQRYKGWKKAVRRTMNWEREDAE
>NZ_CP038437.1|WP_149285111.1|2617172_2617931_+|DeoR/GlpR-family-transcriptional-regulator
MNQQQRQDAIIELVSRQGYASIEQLTEHFAVTPQTIRRDLNALASEGRIRRVHGGAGLESSTVNTAYATRKTLNLDAKRRIATHVAQHVPHHSSLFINIGTSNELVAEALLEHQGLEVITNNLNVAAILHHKDDFNVIVAGGQVRSRDGGIIGEATIDFINQFKVDIGLIGISGIDEDGSLLEFDYQEVRVAQAIIHNSRQVFLVADHSKFHRNPVVRQGNVSQLDALFTDREPPSSIRRLLLDNDVALHIA
>NZ_CP038437.1|WP_149285110.1|2616017_2616476_+|GAF-domain-containing-protein
MPDYSLLARQLKALLDTRDWLTNSAQTSAFLMQEIPDLNWAGFYLQRSSEQLTLGPFQGKPACNPIPFSKGVCGAAARTRQTQRIDDVHAVADHIACDSASESELVVPILDTNGALWGVLDLDSPRKARFSEADQAGIEALVEIFCQASDLD
>NZ_CP038437.1|WP_149285109.1|2615011_2615800_+|MetQ/NlpA-family-lipoprotein
MRKTLIGALAISTLSLAVAQANAAEIKIGTVAGPETDVMQVAADIAKQKFDLDVEIVEFTDYVTPNAALADGSLDANAYQHEPYMNAMVRDRGYDFAIAGRTFVYPIGAYSEKYDNIDDLPDGATIALPNDPSNEGRSLILMHNLGLIQLDDPENLEATPLNVSENEHDYKFREIEAAQLPRVLPDVDMAFINNTFAQPAGLSLDDALIKEGPESPYVNIIAVRAGDEDREEIKQLVEAYQSDEVAAKADELFKGSAVPGWE
>NZ_CP038437.1|WP_149285108.1|2614233_2614887_+|methionine-ABC-transporter-permease-MetI
MSSALLNLILSATAETLYMVFVSGVLSALAGIPLGVLLYVTRPGQILPNATLNSVLGIITNVGRSIPFIILMVALIPFIRILVGTSIGTNAAAVPLTIAAIPFVARLVEGSLNEVSPGLIEAAQSMGATPWQIITKVLLPEARGGIFTTLTITVVTLVSYSAMAGAVGGGGLGDLGIRYGYMRYDSTVMLITVAILVVMVQGFQSLGDYLVRKSDHK
>NZ_CP038437.1|WP_149285107.1|2613209_2614253_+|ATP-binding-cassette-domain-containing-protein
MIRLHNVSKTFGAGPRAVTALKSIDLHVPKGQIHGVIGLSGAGKSTLIRCVNLLERPTTGSVFVDDKELTALSEEALREARHRIGMIFQHFNLLTSRTVFDNVALPLEFMKLSKNEIASRVTPLLDLVGLSDKANQYPSQLSGGQKQRVAIARALASRPQVLLCDEATSALDPHTTTSILELLQDINQKLGLTILLITHEMEVVKTICHRVSLISDGELVEEAEVGDFFTAPRTQLGRHFLNDFLELEPPRGLIERLQGSPSDNSHPVVRLGFSGDAVSTPLISRLARECGVDVSILQAKVESIQDRTLGLMIAELMGDEADTQRAIAYLESHDLTVEVLGHVQRTA
>NZ_CP038437.1|WP_149285106.1|2612041_2612671_-|riboflavin-synthase-subunit-alpha
MFTGIIQGTAEVVAIQEAEAFRTHVVAMSDELREGLEIGASVAHNGACLTVTSIEGERVSFDLMRETLRVTNLGAVKVGDRVNLERAARFGDEIGGHAMSGHVMGMAELVEIDEAPNNRRLWFRLPEGLDRFVFAKGYIGVDGASLTIGAVRNATSKEQSRTDFCVDLIPETLARTTLAERCPGDRVNIEIDPQTQAIVETVERVLANR
>NZ_CP038437.1|WP_149285105.1|2610606_2611938_-|NCS2-family-permease
MSTPDNSLSRPRGALDRYFKLGEHNTDVKTEIIAGITTFLTMAYIIFVNPSILSEAGMDYGAVFVATCLAAAIGCLVMGLWANYPVALAPGMGLNAFFTYGVVLGMGHTWQVALGGVFLSGVTFFLLSIFRIREWIINAIPMTLRLGIAAGIGLFLGMIALKNAGIVVDNPATLVSVGDLSQPAPLYALGGFFLITALAHLRVTGAVMIGILGVTILAMLLGHNEFAGVVSMPPSIAPTILQLDISGALDVGMISVVFAFLFVDLFDTSGTLVGVAHRGGLLDKDGKLPRLGRALMADSTATMAGAALGTSTTTSYVESTAGIAAGGRTGLTAVVVAVLFLCGLFFSPLAGSIPPYATAGALLYVAALMTGSLAHVDWDDATEAAPVMIAALAMPLTFSIAEGIALGFVSYVAIKALSGRFRDLNSAVVILGILFAFKLIFID
>NZ_CP038437.1|WP_149285104.1|2609952_2610501_-|adenine-phosphoribosyltransferase
MSIYGDYIKSVIRTVPDWPQEGVNFRDITPLLQNSAAFRKLIDSFVHRYQEMQLDAIAAIDARGFIIGAPVAYELGCSFVPVRKKGKLPFQTISQTYTLEYGQAEVEMHADAFRDGDRILIMDDLIATGGTMLAAAELIKRSHGQVVETAAIVDLPDLGGSQKVRDAGYSVFAVCSFTEDEA
>NZ_CP038437.1|WP_149285114.1|2621679_2623182_-|aldehyde-dehydrogenase-family-protein
MSHPKTYAEWQTMAESVKANLETRAFIDDAFVDAVSGDTFETTNPATGEVLAKVASCDAADADKAVAVARRAFNSGEWSRMAPGARKKVLLKLADLMQQHRDELALLDTLDMGKPIGSSLGDMAGAIGTIRHQAESIDKVYGEVAPTGEEALALVLREPLGVVASIVPWNFPLMMTAWKIAPALAAGNSVILKPSEKSPLSALRLAQLAKEAGIPSGVFQVLPGFGHTVGKALALSMDVNCLAFTGSTGVGKQLMQYAGQSNLKRVYLECGGKSPNIVFADCKNLDKVAQHAAEAIFHNQGEVCIAGSRLLVENSVRETFVDKVLAAAENMQPGDPLDPNSFMGAIVDRSQYERILDYIRKGVEEGAQLRTGGKSLEGPGLFICPTVFDGVTDKMAIGREEIFGPVLSVFGFDREEEAIALANDSDYGLAAGLWSQDIDRIMRVTRRLESGQVFVNNWAGGDQTVPFGGVKQSGNGRDKSHHSLEEYSELKSVWISLGSA
>NZ_CP038437.1|WP_149285115.1|2623318_2624725_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MARLSSERLKALDTAHHLHPFTDYKALGEEGSRIITEADGIYIQDAEGNRMLDAMAGLWCVNLGYGRQELVDAATAQLQQLPYYNNFFKTTHPPAVELAETLCRLAPKHMNRVFFTGSGSEANDTVVRMVRHYWALKGKPEKQWIIARENAYHGSTLAGMSLGGMAAMHGQGGPAVPAITHVRQPYWFTEGRDMSPDAFGQACADAIEERILELGEDKVAAFIAEPVQGAGGAIIPPQSYWPAVKKMLAKYDILLVADEVICGFGRLGEWFGSEHYGLEPDLMPVAKGLSSGYLPIGGVLVGDRVAQTLIEDGGEFFHGFTYSGHPTCAAVALKNLQLMEAEGVVEHVRDEVGPYLAQRWKELEQHPLVGEARSLGLIGALEIVADKAAGKRFDKTLGVGNLCRDICFDTGLVMRSVGDTMVISPPLVITKAQIDELVGLATAALDETARRLQAQGVAFATQDSLAQA
>NZ_CP038437.1|WP_149285116.1|2625260_2625743_+|GNAT-family-N-acetyltransferase
MNCIGGGDSVSSMNPRIVPACTRDYDFAFSVKKDALGPHIERQWGWDEEYQLRIHEQRWREKPWFLIYLGEQKVGTVSLQEAPSTLRFGEFYISSKWRGKGIGTRVITDVVSRCDIENRTCKLEYLKWNPVGSLYKRHGFEVVDENDIHYFMLRCPSSTP
>NZ_CP038437.1|WP_149285117.1|2625820_2626135_-|monooxygenase
MITVMTTFTLPTLITRQEARNIFLSTAPEYRDVQGLLRKTYIVSDDGRTVGGIYFWKSRPEAEAMYTESWRQFVREKYGTEPTVTYFESPVVVDNQSHQILGDE
>NZ_CP038437.1|WP_149285118.1|2626222_2626702_-|GNAT-family-N-acetyltransferase
MNLHIRPAKPSDASQILAFITELADYEKARHEVKANLEDIENTLFGKQATAQALLCLRDEQPIGFAVYFFSYSTWLGRNGLYLEDLYVSPEHRGIGAGKLLLKHLAREACAKGCGRLEWSVLDWNTPAIEFYQSIGAVPQDEWIRYRMEGEVLKKFAEG
>NZ_CP038437.1|WP_149285119.1|2626793_2627723_+|LysR-family-transcriptional-regulator
MHPILRRLDLNLLLTFDALYRHRTVANAANELAISPSAFSHALGRLRAALNDELFIRQGNRMHPTQRADLLATTVAESLKLLSDQLGQWQPFDPTTSQRMFVFSATDYTAFELLPRLINRLHNVAPKLRLRMTYSSRKVSIEDLASGHIDFALGYGEDRDTLPAGIDSEDWLTDDYIVIASRNHPRIEDTLDLSSYLSERHAVITPWGETSGVVDLVLQAQGLQRDVALQLPTVLVAPFVIAESELLMTIPRRAAETLQAATPIAIYPVPFTIPPYTLKLYSHSKYARSDAHIWMSRQLKALFAERAPS
>NZ_CP038437.1|WP_149285120.1|2627852_2628170_+|NIPSNAP-family-protein
MITCHIRYIIDPKKAAEFEEYARMWIPLVEKFGGTHHGYFLPSEGANNVALALFSFDSLAAYEIYRKHSQLDEGCQKAFRFAEETDCVISTERSFLRPVLGESSE
>NZ_CP038437.1|WP_149285121.1|2628215_2628602_+|tautomerase-family-protein
MIVIYGIKEHLNPIKAQLSDTIHQCMQSVLGMPEDKRAHRFIPLDAEDFYFPGGRTPAYTVIEINMMQGRSPDTQKALIKALFSKIESEVGIAPIDVEVTIKEQPAHCWGFRGMTGDEARDLAYSVNV
>NZ_CP038437.1|WP_149287170.1|2629038_2629974_-|helix-turn-helix-domain-containing-protein
MKLAHREQHIVDLLAKMAPQEGYNLTALPDVRFLRSNRPLRRTPVLYDPGIVIVCQGRKRGYWGNQTYVYDAQHYLAVSVPVPFTMETEASIEQPLLAIYLHLDIPLATELLLELEEEGISGASTPCGLMASPMEPALADTVSRFLEIMESPEDGKILGRSMIREIYFRVLRGEQGGAMRAALGTTTPFGRISRAIRRIHEAYATPLDVESLAREARMSVPTFHVHFKAVTQTSPMQYVKAVRLHQARLLMFRQARTAAVAASDVGYESSSQFSREFRRLFGRTPTAEVAWMRSTFELPPPESPSVYVSSH
>NZ_CP038437.1|WP_149285122.1|2630165_2630999_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSQSRTILITGVSSGFGQALATEALAAGHRVIGTVRREEAVKAFEAHESKRAHARLLDLTDSPSITPVVKEIIDEFGRIDVLVNNAGYGHEGILEESPTEEMRRQFEVNVFGAVEMIKAVLPSFRERRSGHIINITSMGGYITMPGIAYYCGSKFALEGISDALSKELAPFNIHVTAVAPGSFRTDWAGRSMCRSPRSIADYDTLFDPVRQARKDKSGHQLGNPVKAAQAMLEIMENATPPTHLLLGSDALELVRGQLINKSREIDTWETLTVSTDG

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Crispr_ID: NZ_CP038437_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP038437_3

3961386-3961833

Orphan

I-F

Consensus_repeat	Method
TTTCTGAGCTGCCTATCCGGCAGTGAAC	CRISPRCasFinder
TTTCTGAGCTGCCTATCCGGCAGTGAAC	CRT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	PILER-CR

7 spacers

The CRISPR arrays of NZ_CP038437_3

>merge|NZ_CP038437|3|3961386-3961833|CRISPRCasFinder,CRT,PILER-CR
TTTCTGAGCTGCCTGTGCGGCAGTGAACGTACCGTCCGCGAAGTGTGCCGCTATCTGTCCTTTCTGAGCTGCCTATCCGGCAGTGAACGTCGAACACCTTGCCGTAGTCAGCTATCTTCTTTTCTGAGCTGCCTATCCGGCAGTGAACCGCCTCACATACTATCTCGAAGAGGAGCTTGATTTCTGAGCTGCCTATCCGGCAGTGAACGTCCAGCAACGCGGCCACGTTGACGATTCGACTTTCTGAGCTGCCTATCCGGCAGTGAACTTTGTTCAGTGCGTCGATCATGACGTCCGTTTTTTCTGAGCTGCCTATCCGGCAGTGAACGGTGGATTATGACCACTTTTGCGGAACAAATATTTCTGAGCTGCCTATCCGGCAGTGAACGAAGACGTGTCACGGATGTTGTCAATGTTTTGTTTCTGAGCTGCCTATCCGGCAGTGAAC

>NZ_CP038437|3|3|3961386-3961833|CRISPRCasFinder
TTTCTGAGCTGCCTGTGCGGCAGTGAAC	GTACCGTCCGCGAAGTGTGCCGCTATCTGTCC
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GTCGAACACCTTGCCGTAGTCAGCTATCTTCT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	CGCCTCACATACTATCTCGAAGAGGAGCTTGA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GTCCAGCAACGCGGCCACGTTGACGATTCGAC
TTTCTGAGCTGCCTATCCGGCAGTGAAC	TTTGTTCAGTGCGTCGATCATGACGTCCGTTT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GGTGGATTATGACCACTTTTGCGGAACAAATA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GAAGACGTGTCACGGATGTTGTCAATGTTTTG
TTTCTGAGCTGCCTATCCGGCAGTGAAC

>NZ_CP038437|3|1|3961386-3961833|CRT
TTTCTGAGCTGCCTGTGCGGCAGTGAAC	GTACCGTCCGCGAAGTGTGCCGCTATCTGTCC
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GTCGAACACCTTGCCGTAGTCAGCTATCTTCT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	CGCCTCACATACTATCTCGAAGAGGAGCTTGA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GTCCAGCAACGCGGCCACGTTGACGATTCGAC
TTTCTGAGCTGCCTATCCGGCAGTGAAC	TTTGTTCAGTGCGTCGATCATGACGTCCGTTT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GGTGGATTATGACCACTTTTGCGGAACAAATA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GAAGACGTGTCACGGATGTTGTCAATGTTTTG
TTTCTGAGCTGCCTATCCGGCAGTGAAC

>NZ_CP038437|3|1|3961506-3961833|PILER-CR
TTTCTGAGCTGCCTATCCGGCAGTGAAC	CGCCTCACATACTATCTCGAAGAGGAGCTTGA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GTCCAGCAACGCGGCCACGTTGACGATTCGAC
TTTCTGAGCTGCCTATCCGGCAGTGAAC	TTTGTTCAGTGCGTCGATCATGACGTCCGTTT
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GGTGGATTATGACCACTTTTGCGGAACAAATA
TTTCTGAGCTGCCTATCCGGCAGTGAAC	GAAGACGTGTCACGGATGTTGTCAATGTTTTG
TTTCTGAGCTGCCTATCCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP038437.1\|WP_149286225.1\|3953195_3953387_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038437.1\|WP_149286231.1\|3961013_3961307_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	unknown	unknown	gnl\|CDD\|378301
NZ_CP038437.1\|WP_149286240.1\|3973345_3976972_+\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|273633
NZ_CP038437.1\|WP_149286226.1\|3953385_3954735_+\|MCD,-Malonyl-CoA-decarboxylase-MCD	unknown	unknown	gnl\|CDD\|368376
NZ_CP038437.1\|WP_149286234.1\|3966758_3967262_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	unknown	unknown	gnl\|CDD\|377815
NZ_CP038437.1\|WP_149287306.1\|3951273_3951813_+\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|377284
NZ_CP038437.1\|WP_149286239.1\|3971333_3972923_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP038437.1\|WP_149286228.1\|3958546_3959983_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225080
NZ_CP038437.1\|WP_149286232.1\|3962070_3964260_-\|OsmC-domain/YcaO-domain-containing-protein	unknown	unknown	gnl\|CDD\|132588
NZ_CP038437.1\|WP_149287307.1\|3951812_3953159_+\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224509
NZ_CP038437.1\|WP_149286227.1\|3954731_3956297_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|181011
NZ_CP038437.1\|WP_149287309.1\|3965757_3966705_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
NZ_CP038437.1\|WP_149286237.1\|3969734_3970592_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236600
NZ_CP038437.1\|WP_149286233.1\|3964703_3965624_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP038437.1\|WP_149286230.1\|3960597_3961017_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227786
NZ_CP038437.1\|WP_149286236.1\|3968806_3969535_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP038437.1\|WP_149286229.1\|3959963_3960497_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_CP038437.1\|WP_149286235.1\|3967265_3968810_+\|tricarboxylate-transporter	unknown	unknown	gnl\|CDD\|225870
NZ_CP038437.1\|WP_149287308.1\|3956324_3958331_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP038437.1\|WP_149286238.1\|3970591_3971065_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039

Protein	Function_ID	Function_description	E-value
NZ_CP038437.1\|WP_149286231.1\|3961013_3961307_-\|type-II-toxin-antitoxin-system-HigB-family-toxin	gnl\|CDD\|378301	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system. HigB_toxin is a family of RelE-like prokaryotic proteins that function as mRNA interferases. HigB cleaves translated mRNA only, and cleavage depended on translation of the target RNAs. HigB belongs to the RelE super-family of RNases. The toxin-antitoxin gene-pair is induced by environmental stress factors.	4.68816e-30
NZ_CP038437.1\|WP_149286240.1\|3973345_3976972_+\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|273633	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP038437.1\|WP_149286226.1\|3953385_3954735_+\|MCD,-Malonyl-CoA-decarboxylase-MCD	gnl\|CDD\|368376	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain. This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidized. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK).	1.73643e-144
NZ_CP038437.1\|WP_149286234.1\|3966758_3967262_+\|tripartite-tricarboxylate-transporter-TctB-family-protein	gnl\|CDD\|377815	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family. This family consists of several hypothetical bacterial proteins of around 150 residues in length. This family was formerly known as DUF1468.	0.000106386
NZ_CP038437.1\|WP_149287306.1\|3951273_3951813_+\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.61615e-19
NZ_CP038437.1\|WP_149286239.1\|3971333_3972923_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP038437.1\|WP_149286228.1\|3958546_3959983_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	2.13413e-55
NZ_CP038437.1\|WP_149286232.1\|3962070_3964260_-\|OsmC-domain/YcaO-domain-containing-protein	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NZ_CP038437.1\|WP_149286233.1\|3964703_3965624_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	2.28939e-70
NZ_CP038437.1\|WP_149287309.1\|3965757_3966705_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	7.39083e-76
NZ_CP038437.1\|WP_149286237.1\|3969734_3970592_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|236600	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional.	1.27134e-162
NZ_CP038437.1\|WP_149287307.1\|3951812_3953159_+\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.48474e-102
NZ_CP038437.1\|WP_149286230.1\|3960597_3961017_-\|transcriptional-regulator	gnl\|CDD\|227786	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription].	1.55251e-15
NZ_CP038437.1\|WP_149286236.1\|3968806_3969535_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.16753e-59
NZ_CP038437.1\|WP_149286229.1\|3959963_3960497_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	4.93297e-57
NZ_CP038437.1\|WP_149286235.1\|3967265_3968810_+\|tricarboxylate-transporter	gnl\|CDD\|225870	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown].	1.51984e-135
NZ_CP038437.1\|WP_149286227.1\|3954731_3956297_+\|AMP-binding-protein	gnl\|CDD\|181011	PRK07514, PRK07514, malonyl-CoA synthase; Validated.	0
NZ_CP038437.1\|WP_149286238.1\|3970591_3971065_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.25203e-29

>NZ_CP038437.1|WP_149286231.1|3961013_3961307_-|type-II-toxin-antitoxin-system-HigB-family-toxin
MHIITQKRIWEAMERWPHAATALNSWYRLMKTSEPKDFAAMKGIFPAADKVGSYHVFDIGGNKIRLIATVHYRAKRVFIRHILDHAEYDKGKWRSDP
>NZ_CP038437.1|WP_149286230.1|3960597_3961017_-|transcriptional-regulator
MNAILDQAAAHWAHIAPLLAEPHDEEDYDAKVAALDELLEVVGDDEDHPLASLALRLGDVIEAYDEANRPIPQASGVEVLRYLMAEHDITQSDLPEVGAQSVVSAILSGKRQLNWRQICELSERFGVSADAFRSISESR
>NZ_CP038437.1|WP_149286229.1|3959963_3960497_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MSIKPAEYDTLSQYAGLDIYYPPESAALGCLVIAASGNGLAHLDFADEEQVQMLSLRPNEHTDTCKAQLGEYFQGNRKDFDLNLDAAGTDFQRQVWQALTTIPYGETRSYAEIAEGLGRKGAQRAIGMANGRNPIAIVVPCHRVIGSDGRLTGYAGGIGRKQWLLAFEAGEVPLGLC
>NZ_CP038437.1|WP_149286228.1|3958546_3959983_+|helix-turn-helix-domain-containing-protein
MSSSLTLAPDQCRRARLARDARFDGCFFVGVVTTGIYCRPICPAKAPLERNVRYFDTAFAAAEAGFRPCLRCRPDSAPGSPAWRGTDTTLRRALRLIDEGALTDGNMTQLAERLGIGERHLRGLFQRRFGVSPKAYALHRQCLFAKQLLHETQLPITEIAFASGFSSVRRFNDTFHSRIGLSPREVRRQQKTHDTPGIELKLSYRPPYAWETLRDFYAQRSIEGMEWVGDHYLGRHFQWGSASGKFTAYFDEPGPNNEPSQRHGRHAMRVELTLDDLRQLAPVVANIRRVLDLDADPEVIATVIEPTIERSSIEGLPKPSLVSGLRLPGIWSPFEARIRAILGQQVSIIAARRLTQTLVNTLGEPASDGGRHFPTPSAIAQDDLAFLGMPQRRRQTLKDLATAIMNQQDSESIPGIGPWTRDYARLRGDSDPDVWLPGDAGVKRALKQLPCVDPESATPWRSYLLLQLWNLDHEHQAR
>NZ_CP038437.1|WP_149287308.1|3956324_3958331_+|hypothetical-protein
MRILAAGAMAMAGTLASQMATAKVEEFEVIDTVSPAFEGATFGNVGQYERINAIAHFAIDPDSPRGRSIVDLDQAPIDDDGLVRYSTEVIMLRPVDASRGSGVLFYDVPNRGNTLGPILMNLADNSTPPVSAADTGDGFLLKQGYTVVWSGWQTGLPDDAINLMLPQLDGVTGQSREEFIFDTPGTRDTVPLSYPVANSDPDKATLSVRLHPTEPRSTAPGLSFRYLSDSEVEITRPQGLDAGAIYEFIYPAKGAQPTGLGFTATSDLISFLRGNPGHDTETPLQGIKAAMALGISQSGRYLRDFVYQGFNADESGARVFDGVIPHIAGSRKTFTNYRFAQPGRYSRQHEDHDFPGDQFPFSYAQVTDPISGRSDSILANCTATDTCPKIMHTDTSTEFWQARAALVSTAPDGTPLALPDSVRLYYLSGLRHFAPFSENIALEQSSSEQNPDTPLCRFSQNPVSASPIMRGLLTAMKNWVTKDLTPPPSRYPSVSDNTLVDLAELNLPELPSSDFIPAYNELRLRDHGSLPPTAGPTYPVLVPQLDADGNPQGGIATPRVAVPLGTYWGWNLRNEGYAGGDLCGLAGSFIPFSQGKFAQGTSAQNTFAQGTTEGNSRTSLTKRYANQDDYARAVRDAASALTKDGYMLKEDIDLVTERALQDFQAVAP
>NZ_CP038437.1|WP_149286227.1|3954731_3956297_+|AMP-binding-protein
MNHNLFATFEQRMTARGQAPFITTRKDITKDITKNITTRESRNYSYAEALSVSSKLAGALVAMGVAPGDRVAVQVDKSPEAILLYLACLKVGGVYLPLNTGYTSEEIRYFLSDAEPALFVCRPAALDAARTVAAECGNVRVETLGTAAEGSLMAATAKATAHDTITPRASDDLAAILYTSGTTGRSKGAMLTHANLGSNALSLVEAWRFTEQDRLIHALPIFHTHGLFVACNVILMAGASMRFLPKFDVDVIFEELAEGTTMMGVPTFYTRLLKDPRLTREACANMRLFTSGSAPLTAETHQDFEAATGHAILERYGMTETNMNTSNPYDGERIAGTVGMPLPGVEIRITEREGGHHKPLPQGQIGMLEVRGPNVFKGYWRMTEKTREELLEDGFFITGDLALVDERGYVQIVGRDKDLVISGGYNVYPKEVEGHIDEMAGVVESAVIGLPHPDFGEGVTAVVVAEEGAALQEDAIIAALADKLAKYKQPKRVFFVDSLPRNTMGKVQKNQLRERFATTYQ
>NZ_CP038437.1|WP_149286226.1|3953385_3954735_+|MCD,-Malonyl-CoA-decarboxylase-MCD
MNFSFLQELFSNITQRDALLRRRGGTGSTSHRQVVEACRRLLDSDGEASSISLASQALNGYAQLDDNGKSRFFHCLTEDFSADPSAVDAAYEAYKATRGNTELQHLNEASEPQRQELLRRLNLTAGGTYDLVRMHADLLSLIRSEPGLRPLDADFIHLFTSWFNRGFLVLKRIDWNTPAAILEKIIHYEAVHEICDWNDLRRRLDARDRRCFAFFHPATGDEPLIFVEVALTKGLPDRIQPILNASHAAIEAEDADTAAFFGISNCQTGLRGISFGNFLIKQVVQELSSELPGLKNFVTLSPVPGFRAWLDQQREENRFNEEIHEVLDDLDQEGWQQDSDRLKALGDVIRPLAAYYLTKQRNPHGLPLNPVARFHLGNGAQLHRINWPGDVSHKGITHGAGLMVNYLYVPDDIERNHEQYTTEGKVVCSSTVRDLGRRARKHLKGEPVT
>NZ_CP038437.1|WP_149286225.1|3953195_3953387_-|hypothetical-protein
MVSGSLVFALHLVFALHLVFALHLVFALHLVFALHLVFALRLSFVLLLFLFLFLSLPLPPLLS
>NZ_CP038437.1|WP_149287307.1|3951812_3953159_+|TRAP-transporter-large-permease-subunit
MDPVTSGIFIVGALFLLMAIGTPIAFALGGVSLTALVMTRGMSELTYFGETFYGSLASFSFVAIPMFILMGAAVASSPTGRDLYRSLDLWLGKVPGGLAISNIGACSIFAALSGSSPATSAAIGKLGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVTMIVYGISTETSIGRLFIAGAVPGIMLALLFMIWTLIACRMGGYGAPSATMEAASRLKNHLQDNVEGNLKALVRVLPFLVVVMLILFALYGGVATPSEAAGAGAFLCLALAILVYRMWQVKPLSGIMRDALRESVMIMLIIACAEIFAYTLSSLFITQTVAESIASLEVNRWVLMALINLFLLVAGFFLPPVAVIVMTAPILLPIIVAANFDPYWFAVILTINLEIGLITPPVGLNLFIIKGIAPDISLRDILLGSLPYALCMVLGIILLCLFPSIALWLPDLIMGAGG
>NZ_CP038437.1|WP_149287306.1|3951273_3951813_+|TRAP-transporter-small-permease-subunit
MDRLSIAAAVLAAALLGLGVLAVCHMIFVRYILGASTSWQTEFCVFSISAAMLLGAPYVLLTGGHVAITALPDVLPPLPRFVMNLIASLVGLGFCIALAYGAWLYLLEAWHAGWTTGTVWNPPLWPALLPIALGATLLVTQYLAEIARARILPSSKGLSPRKGLSSTEDLPPSKNQEAR
>NZ_CP038437.1|WP_149286232.1|3962070_3964260_-|OsmC-domain/YcaO-domain-containing-protein
MEIKVNFLDNLRLEAKFDDFTVITDQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCVARDIPTENIRLSQNNIVDPENRYNQIFRIQVELPEDLSDKDRQGILRAIDRCTVKKVVQTGPEFQIETVDNLDEDAQALLMAAPEGGSNTWIEGKDLPLEQTIANMTGILEGLGMKVEIASWRNIVPHVWSLHIRDAASPMCFTNGKGSTKESALCSALGEFIERLSCNFFYNDQFFGEEIANSEFVHYPNEEWFKPGLDDALPEGLLDDYCLDIYNPDGELCGSHLIDTNSGNAERGIVALPFVRQSDGEVVYFPSNLIENLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREIIEQEIALPDVPMEVLQQYPDLLEGVQALEAQGFPILVKDASLGGRFPVACVTLMNPKTGGVFASFGAHPSFHVALERSLTELMQGRSFEGLNDFQPPTFNSLAVSEPNNFVEHFIDSSGVVSWRFFSSKHDFEFCEWDFSGTNDEEASALMGILEELGMEAYMAVHTDLGAPVCRILVPGYSEVYPVEDLIWDNTNMALDYREDILTIHSLSDEQLADLLERLEESQIDEHMDIITLIGIEFDENTIWGQLTILELKLLIHLALQQHEEALERTQMFLQYNDNTVERGLFYQAMQAALEIVIDDELELDDYLFNLERMFGKDTMQTVVDSVNGEVRFPGLTPTSMQLEGLDKHQRLIESYKKLHAARAALAGKS
>NZ_CP038437.1|WP_149286233.1|3964703_3965624_+|dihydrodipicolinate-synthase-family-protein
MSKQESRSRVEQALAGVSGVHVTPYQEDGRINHQLLSKVVDDIAQSGVHNIVTGGNTGEFYALTLDEIETVYRLAVDSNKGRSVVTAGVGRSQADAIHLTHAAQAAGVDAIMVHQPPDPFASPRMLTSYIRGIADETDLPIIAYARNPGLTPGDFATLAEIDNVVAIKYAIPDPLRMAECIRATQGTSLLWICGLAESWALPFYAYGARGFTSGLVNVNARLTMQFHQALEDQRWEEARRLIDLIADFEDMRTLEQNGTNVTVVKEAMRLQGSDVGPVRPPGVDRLHAPQAHSLNNILEGWASTQA
>NZ_CP038437.1|WP_149287309.1|3965757_3966705_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MNRLICLVGASLLASSAIAADFPQRDIRLIVPWAAGGGTDGISRKISNLAEQDLPASIYAENITGAVSATGLTQMMRARPDGHTLSVLTYDSVITIPRDELVPGYSLDKMTPIARITQEADAIVASKQSGIESLEELIETAKAKPGTVRIGVMPEGSGPYLAARRLENTTGADFNIITYPGAAAAESEALLSGEIDAAIASLGDFAGLIESGDVKGLVELSSEQNPTYPDVPPISENGIDLESGSFIVLVAPANTPEDAIQTLEAAYRKAYDSDEFQQWISQIGVTPSWLGSDEVGDWMLTRQEQVFALMDELGL
>NZ_CP038437.1|WP_149286234.1|3966758_3967262_+|tripartite-tricarboxylate-transporter-TctB-family-protein
MNQYKTSKIPEVAFPAILFATSLGYLAYSLLLGAPVSKGLPSPLFFPTVLGAVALLLSTTLLYRAIRSFKNSSREAKKDETKKDEIAKEETTELRPALIVIATIAYISIFNFSGYFLSSLFYIFCIISIFSDLKKPLITAVGSIIITAMGLVVFEYIFRIRLPGILG
>NZ_CP038437.1|WP_149286235.1|3967265_3968810_+|tricarboxylate-transporter
MDFTLLVFSSFSELFNPVTLIYVVSGFLIGTVFAAIPGLTATLALALLLPLTYSLDLTTALMACASIYMAGMCGGSITATTINIPGAPSSMMTALEGYPMQQRGQGAQALGHASLASMIGGSIGALLLIMLAPFVAQASLLVQTAGKFSLIAFALIVIVIAQRGRIVKAAMAACLGLMLATIGLDSMVPMARFTFGTEALTAGIDLMPVIIGTFAISELLIQARTVAEHKRLRREALQTPTIRRRDFVPPLSSIRDIGLWCYIKSSLIGYLVGTLPGAGGSMGSFLAYAEAVRTSREPERFGKGNPQGIAAAESANNAVCGGALVPMLTFGIPGDPITAIVLGVLIINGIQPGPQLLADQAGLIAPMLASLLFSAIVLIPLTLFLIGPYFIRIVSIRKDMLYGAIALLAVVGSYVATYSVYQMGLTLALGVLAYYLRKHGYPVITLLLGFILAPNLEEFLRRSLTLSQGDPSIFFTNMDSLFFIVLTLIFVYFLAIKRPVQYNSDNRSTSGITK
>NZ_CP038437.1|WP_149286236.1|3968806_3969535_+|FCD-domain-containing-protein
MNLDKSSILGTPPRREKLADKLYGKLMQAIIDGQFKKGEKLPSEHRICQHYSVSRPVVREALMRLQADGIIISRQGSGSFIQRIPPAGLIQYADASDVSLLLKSYEVRIALECEASALAAERRNEGQLIQLRDALKGMEEDFSQGRIASEADFTFHMVIAEATGNDMFPSILESIHIDIEKAMTMALSITQSASQERIDRVIGEHRMILEAIEQRDSDGARLAMRCHINGVRKRVTDNLSDT
>NZ_CP038437.1|WP_149286237.1|3969734_3970592_-|sigma-70-family-RNA-polymerase-sigma-factor
MTDARHEDAVVGFDTLRPGLMRVAYRMLGSVADAEDILQEAFIRWMKVDRGEVMEPEAFLRRTVTRLCLDQLKSARHQRETYVGPWLPEPVVEEEEEEDVTLPLMLALERLSPLERAAFLLHDVFGLAYEEIATTIQRDVAACRQLAARARTHVREERPRYQVSRHQGLEIAKAFFVASRSGDMQALGDMLAADISVHADGGGKRAAAITPIFGFDAVMKFQQILADKLREHGSTLVRTGFVNGLPGFITLEADGEFQTTALDIEDGRISAIYVVRNPDKLRHLH
>NZ_CP038437.1|WP_149286238.1|3970591_3971065_-|carboxymuconolactone-decarboxylase-family-protein
MTVKVDPFAAAPSLMMDWQRVSIAINKSMDPTLVGLVEIRASQINGCANCLNMHTVFARENGETEQRINLLAAWREAPCYTDRERAALGWTEAMTRLSEGHARDAAYQALQDQFNEEEQVKLTLILSVINGWNRIATGFGVWVDPAEVKASVARVSA
>NZ_CP038437.1|WP_149286239.1|3971333_3972923_+|ABC-F-family-ATPase
MLSTANITMQFGPKPLFENVSVKFGQGHRYGLIGANGCGKSTLIKILGGDLEPTSGQVMKDATTRLGKLRQDQFAFENERVIDTVIMGNEELWSVAAERERIYSLAEMSEEDGMAVADLEVRFAELDGYTAESRAGELLLGLGIPLEQHDQPMSVVAPGWKLRVLLAQALFSDPDVLLLDEPTNHLDINTIRWLEDILKARSSTMIIISHDRHFLNSVCTHMADLDYGELQLFPGNYDEYMTAATQARERLHNENAKKKAEIAELKQFVSRFSANASKAKQATSRQRKIDKIQLNEVKPSSRISPFIRFEQNKKIHRQALAVEALSKAWDDNVLFDRFDLRVEAGERIAIIGPNGIGKTTLLNCLVGAMAPDTGEVKWTDAAEVGYFAQDHAADFDGGETLFEWMQQWTTAGEQTVRGALGRMLFSNDDIGKSVKVISGGEQGRMLFGKLSLQNPNVLVMDEPTNHLDMESIEALNLALEHYPGTLIFVSHDREFVGSLATRIIEMKDDGIVDFSGSYDDYLRSQGVFG
>NZ_CP038437.1|WP_149286240.1|3973345_3976972_+|exodeoxyribonuclease-V-subunit-gamma
MAQSTALTPGFMVIHGNHLEALRDLAVNWMRQHPLGPLENEVLLVQSNGISQWLKLALAANPEDGGCGIAAALDVTLPARFLWQAYRTVLTHLDGPDSVPSTSPFDKSRLTWRLMRLLPSLLDAPDTAEAFTPLKRFLDTDDDQRKRHQLAERLADLFDQYQVYRGDWLEAWSNGDDVLIDARGQSRPLPQDQHWQAVLWRVLRADIGEAGIASSRAGVHQRFVAACQSLDDSTRPAGLPRRIMVFGISSLPSQTLEALAALSRMCQVVLCVHNPCEFYWADIIEHRDLLRAARRRQQQRPGMPLDLDDSQMHLHAHPLLAAWGKQGRDYLRLLDEFDEHQQYAKLFENDALRIDLFEPHALPDGRQQLLHQLQDDIRALRPLSETQSLWPAVEKEKDVSLTFHIAHSPLREVEILHDQLLAAFSADETLRPRDVLVMVPEVDAYAAAVTSVFGRLESDDPRYIPFTLSDQASRHRQPLAIAVETLTRLPELRLSVSNLLDLLEVPAVRERFAIREDDLPVLERWIAGSGIRWGLDAEQRQSLDLPGGLSQNTWTFGLRRLLLGYAVGEGAADEPTPAPGQDTAWHDIAPYGDIGGLEAALAGPLVRLIDTLEHHWHALSTPTDVGNWCIRLRALLDDCLSPVDDNDSNLLSRLDLALETWHESAIEADFDGEIPLAVVREQWLTTLDDGGLSQRFLAGAVNVATLMPMRAIPFRHVWLLGMNDGDYPRTQIPQDFDLMGQDYRPGDRSRREDDRYLFLEALLSARERLSISWVGRSIHDNSECPPSVLVSQLRDHLARGWQLDESDENGSTALLEHLTTEHPLTPFSPHYFMGQPHLFSYAHEWRQVHDRDALTDQVIAPLPAWEANAPLTLARLSRLLDDPVATFFNQRLGVRLALPESGRLDQEPFALNGLDRWQLQDTLIQAQRRAVDSTEGGEDDRHQARQDALYSTLDRLAREGHLAMGGFAERMRQHLVEPMDELFELYARTCQRWPHAHQVATPVSLTLGGLEIEDVIDELRQDADGQRCRVVLLTSSLIRNNRYHWKHWVRPWVVHLVAQICLGPTTTRLLSRVGDGHLPPLSADEAQSWLGNIATVWHQAMCRPLPLARDSAFAWLRKGGTPAAMSRILEGQSEKADEAALDDAWKVLVGNEFQPGEFPRNAYLTRVWAGPEALINEHGNEFAALAESLYGPLSRLARSGEADNGGNQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	KC170282	Uncultured bacterium plasmid pMBUI6, complete sequence	8086-8116	6	0.806
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NC_006362	Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence	134010-134040	7	0.774
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_LN868941	Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence	39497-39527	7	0.774
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_CP031419	Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence	78087-78117	7	0.774
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	32449-32479	7	0.774
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1895858-1895888	7	0.774
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	CP021182	Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence	194196-194226	8	0.742
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	121425-121455	8	0.742
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	CP052389	Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1	37924-37954	8	0.742
NZ_CP038437_1	1.2\|59853\|31\|NZ_CP038437\|CRISPRCasFinder	59853-59883	31	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1773119-1773149	8	0.742
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	337379-337410	8	0.75
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	234656-234687	8	0.75
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1475688-1475719	8	0.75
NZ_CP038437_3	3.5\|3961654\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961654-3961685	32	MH791401	UNVERIFIED: Aeromonas phage AsFcp_2, complete genome	138812-138843	8	0.75
NZ_CP038437_3	3.5\|3961654\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961654-3961685	32	MF919510	Gordonia phage Kabluna, complete genome	8011-8042	8	0.75
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	397591-397621	9	0.71
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NZ_CP013108	Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence	154255-154286	9	0.719
NZ_CP038437_1	1.1\|59799\|31\|NZ_CP038437\|CRISPRCasFinder	59799-59829	31	NZ_CP031082	Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence	83506-83536	10	0.677
NZ_CP038437_1	1.2\|59853\|31\|NZ_CP038437\|CRISPRCasFinder	59853-59883	31	NZ_CP033221	Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence	219992-220022	10	0.677
NZ_CP038437_3	3.3\|3961534\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961534-3961565	32	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	296323-296354	10	0.688
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NZ_CP013256	Kocuria flava strain HO-9041 plasmid 2, complete sequence	8207-8238	10	0.688
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	967843-967874	10	0.688
NZ_CP038437_3	3.4\|3961594\|32\|NZ_CP038437\|CRISPRCasFinder,CRT,PILER-CR	3961594-3961625	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	823684-823715	10	0.688

1. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 6, identity: 0.806

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
cggcggccgtggcgctaaaggcgggctaact	Protospacer
********  ************** *. * *

2. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NC_006362 (Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence) position: , mismatch: 7, identity: 0.774

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
gggcggcccaggcgcggaaggcggccatggt	Protospacer
 ************** .********* ...*

3. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_LN868941 (Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.774

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
gggcggcccaggcgcgcaaggcggccatggt	Protospacer
 **************  ********* ...*

4. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP031419 (Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
gggcggcccaggcgcgcaaggcggccatggt	Protospacer
 **************  ********* ...*

5. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
gggcggcccaggcgcggaaggcggccatggt	Protospacer
 ************** .********* ...*

6. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.774

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
cggcggccatggcgctaaaggcggcggcgcc	Protospacer
********  ***************  *. .

7. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to CP021182 (Sphingomonas wittichii DC-6 plasmid pDC01, complete sequence) position: , mismatch: 8, identity: 0.742

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
aggcggcccaggcgcagaaggcggcacttca	Protospacer
 ************** .******** *.

8. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
tggcggcgcaggcgctgaaggcggacgggct	Protospacer
.****** ********.******* *  . *

9. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 8, identity: 0.742

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
cgtcggcccgggcgctaaaggcgctatcgac	Protospacer
** ******.************* . .*.*.

10. spacer 1.2|59853|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

aggtggccccaatgccagcggtggcccgggt	CRISPR spacer
ggcggaggccaacgccagcggtggccccggt	Protospacer
.*  *.  ****.************** ***

11. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
gaccaggaacgcggcctcgttgacggtgagca	Protospacer
* **** ********* ********.*  *

12. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 8, identity: 0.75

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
ggccagcagcgcggccacattgacgcccttac	Protospacer
* ******.*********.****** ... **

13. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
gaccaggaacgcggcctcgttgacggtgagca	Protospacer
* **** ********* ********.*  *

14. spacer 3.5|3961654|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to MH791401 (UNVERIFIED: Aeromonas phage AsFcp_2, complete genome) position: , mismatch: 8, identity: 0.75

tttgttcagtgcgtcgatcatgacgtccgttt	CRISPR spacer
cttgttcattgcgtccatcatgacgtcacgga	Protospacer
.******* ****** ***********

15. spacer 3.5|3961654|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to MF919510 (Gordonia phage Kabluna, complete genome) position: , mismatch: 8, identity: 0.75

tttgttcagtgcgtcgatcatgacgtccgttt	CRISPR spacer
cgtggtcagggcgtcgatcatgacgtcggcga	Protospacer
. ** **** ***************** *.

16. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 9, identity: 0.71

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
ccaaggcccaggcgctcaaggaggccctggg	Protospacer
* . ************ **** *****...

17. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013108 (Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence) position: , mismatch: 9, identity: 0.719

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
cggcagcgacgcggccatgttgacgagcctgc	Protospacer
   ****.*********.******** .* .*

18. spacer 1.1|59799|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP031082 (Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence) position: , mismatch: 10, identity: 0.677

cggcggcccaggcgctaaaggcggccccaat	CRISPR spacer
gtgcggcccaggcgctgcaggcggcgggcgg	Protospacer
  **************. *******    .

19. spacer 1.2|59853|31|NZ_CP038437|CRISPRCasFinder matches to NZ_CP033221 (Parasedimentitalea marina strain W43 plasmid pW43B, complete sequence) position: , mismatch: 10, identity: 0.677

aggtggccccaatgccagcggtggcccgggt	CRISPR spacer
gagtggccgcagtgccagcggtggcggatac	Protospacer
..****** **.*************  . ..

20. spacer 3.3|3961534|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 10, identity: 0.688

cgcctcacatactatctcgaagaggagcttga	CRISPR spacer
ctgggtgagtaccatctcgaaggggagcttga	Protospacer
*    .. .***.*********.*********

21. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013256 (Kocuria flava strain HO-9041 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.688

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
cgccagcagcgcggcctcgttgacgaggttgg	Protospacer
  ******.******* *********  . .

22. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
cagcagcaacgcggccacgacgacgaggccgt	Protospacer
   **************** .*****  * ..

23. spacer 3.4|3961594|32|NZ_CP038437|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 10, identity: 0.688

gtccagcaacgcggccacgttgacgattcgac	CRISPR spacer
cagcagcaacgcggccacgacgacgagaccgt	Protospacer
   **************** .*****  * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

65451 : 112808

uncultured_Caudovirales_phage(20.59%)

capsid,head,terminase,tRNA,plate,tail,portal,integrase,holin

attL 67906:67920|attR 80721:80735

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149282479.1\|65451_66543_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_149282481.1\|66620_67304_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_149282483.1\|67352_67646_+	cysteine methyltransferase	NA	NA	NA	NA
67906:67920	attL	NA	NA	NA	NA
WP_149282485.1\|68246_68756_-	hypothetical protein	NA	NA	NA	NA
WP_149282487.1\|68837_69611_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_149282489.1\|69634_70375_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_149282491.1\|70466_71108_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_149282493.1\|71123_71717_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_149282495.1\|71868_72318_+	acetyl-CoA sensor PanZ family protein	NA	NA	NA	NA
WP_149282497.1\|72314_74699_+	AsmA family protein	NA	NA	NA	NA
WP_149282499.1\|74791_75910_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_149282501.1\|76027_76300_+	oxidative damage protection protein	NA	NA	NA	NA
WP_149282503.1\|77100_78267_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.6e-84	44.4
WP_149282505.1\|78263_78479_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_149282507.1\|78475_78712_-	hypothetical protein	NA	NA	NA	NA
WP_149282509.1\|78704_78926_-	TraR/DksA family transcriptional regulator	H2BDI2	Pseudomonas_virus	9.1e-05	40.3
WP_149282511.1\|78918_79140_-	hypothetical protein	NA	NA	NA	NA
WP_149282513.1\|79132_79348_-	hypothetical protein	NA	NA	NA	NA
WP_149282515.1\|79371_81693_-	replication endonuclease	F1BUS0	Erwinia_phage	7.5e-73	35.9
80721:80735	attR	NA	NA	NA	NA
WP_149282517.1\|81689_82112_-	hypothetical protein	NA	NA	NA	NA
WP_149282519.1\|82161_82554_-	hypothetical protein	NA	NA	NA	NA
WP_149282521.1\|82577_82817_-	transcriptional regulator	NA	NA	NA	NA
WP_149282523.1\|82813_83008_-	hypothetical protein	NA	NA	NA	NA
WP_149282525.1\|83044_83248_-	hypothetical protein	NA	NA	NA	NA
WP_149282527.1\|83518_84133_+	helix-turn-helix domain-containing protein	K4NXA8	Burkholderia_phage	2.4e-10	52.2
WP_149282529.1\|84219_85059_+	hypothetical protein	NA	NA	NA	NA
WP_149282531.1\|85089_85467_+	hypothetical protein	NA	NA	NA	NA
WP_149282533.1\|85510_86056_+	hypothetical protein	NA	NA	NA	NA
WP_149282535.1\|86206_86479_-	hypothetical protein	NA	NA	NA	NA
WP_149282537.1\|86694_87918_+	DUF3289 family protein	A4PE23	Ralstonia_virus	1.8e-09	49.4
WP_149282539.1\|88293_89544_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.8e-96	44.1
WP_149282541.1\|89527_89962_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.5e-22	46.7
WP_149282543.1\|89995_90658_+	SOS response-associated peptidase	NA	NA	NA	NA
WP_149282545.1\|90663_91677_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	7.5e-86	50.8
WP_149282547.1\|91673_92117_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	9.6e-38	55.5
WP_149282549.1\|92132_94808_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	4.5e-138	39.2
WP_149286960.1\|94846_94981_-\|tail	GpE family phage tail protein	A0A2H4JFK5	uncultured_Caudovirales_phage	2.5e-05	65.7
WP_149282551.1\|95007_95334_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.3e-20	52.4
WP_149282553.1\|95384_95894_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.0e-43	50.9
WP_149282555.1\|95912_97421_-\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	2.4e-141	53.9
WP_149282557.1\|97591_98845_-	acyltransferase family protein	A0A088CPR9	Enterobacteria_phage	6.7e-28	29.2
WP_149282560.1\|98869_99424_-	DUF4376 domain-containing protein	A0A1L5C071	Aquamicrobium_phage	2.0e-08	45.9
WP_149282562.1\|99423_100971_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.4e-27	44.0
WP_149282564.1\|100972_101509_-\|tail	phage tail protein I	E5FFH2	Burkholderia_phage	3.6e-47	54.7
WP_149282565.1\|101501_102392_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	1.2e-79	55.0
WP_149282567.1\|102388_102724_-\|plate	baseplate assembly protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.2e-27	57.8
WP_149282569.1\|102727_103018_-	PaaR repeat-containing protein	K4ICQ1	Acidithiobacillus_phage	6.5e-19	51.6
WP_149282571.1\|103026_103539_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	1.2e-26	43.9
WP_149282573.1\|103579_104026_-	phage virion morphogenesis protein	E5FFH6	Burkholderia_phage	2.9e-34	49.3
WP_149282575.1\|104018_104507_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	9.9e-20	35.2
WP_149282577.1\|104612_104984_-	hypothetical protein	A0A1Y0SUD7	Pseudomonas_phage	3.5e-17	50.6
WP_149282579.1\|104980_105793_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	1.1e-66	52.2
WP_149282581.1\|105792_106071_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_149282583.1\|106079_106427_-	hypothetical protein	A0A0S2SYH4	Pseudomonas_phage	8.7e-10	36.3
WP_149282585.1\|106464_106674_-\|tail	phage tail protein	A0A077K8R0	Ralstonia_phage	4.8e-16	63.6
WP_149282587.1\|106673_107144_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	1.3e-19	39.3
WP_149282589.1\|107248_107965_-\|terminase	terminase	K4NX86	Burkholderia_phage	1.0e-52	53.6
WP_149282590.1\|107975_108992_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	7.7e-115	60.5
WP_149282592.1\|109005_109818_-\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	1.8e-53	48.6
WP_149282594.1\|109962_111741_+\|terminase	terminase	A0A077K8Q7	Ralstonia_phage	1.4e-209	59.6
WP_149282596.1\|111737_112808_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.7e-109	57.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP038437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection