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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP038817 Haemophilus parahaemolyticus strain NEB129 chromosome, complete genome 1 crisprs WYL,DEDDh,cas3,csa3,RT 0 0 161 0
NZ_CP038818 Haemophilus parahaemolyticus strain NEB129 plasmid pHha1733, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP038817
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038817_1 742009-742109 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 3401 2 Chrysochromulina_ericina_virus(100.0%) NA NA
DBSCAN-SWA_2 7156 : 11201 4 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_3 19232 : 34192 11 Cedratvirus(16.67%) tRNA NA
DBSCAN-SWA_4 39435 : 41627 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 57960 : 62243 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_6 66503 : 68809 3 Pseudomonas_phage(50.0%) protease NA
DBSCAN-SWA_7 74623 : 83969 8 Tupanvirus(16.67%) tRNA NA
DBSCAN-SWA_8 89803 : 89986 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_9 97149 : 194812 100 Haemophilus_virus(30.56%) tRNA,integrase,tail,portal,terminase,protease,head,capsid attL 150649:150668|attR 195697:195716
DBSCAN-SWA_10 199136 : 200513 1 Cellulophaga_phage(100.0%) NA NA
DBSCAN-SWA_11 203710 : 209121 4 Staphylococcus_phage(50.0%) integrase attL 199695:199708|attR 212151:212164
DBSCAN-SWA_12 213375 : 216731 3 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_13 222838 : 229666 6 Heterosigma_akashiwo_virus(33.33%) NA NA
DBSCAN-SWA_14 242974 : 244399 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_15 250577 : 251528 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_16 261927 : 265937 5 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_17 279638 : 280784 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_18 284436 : 286233 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_19 295171 : 300607 5 Yellowstone_lake_phycodnavirus(50.0%) tRNA NA
DBSCAN-SWA_20 304824 : 331964 29 uncultured_Caudovirales_phage(13.33%) tRNA NA
DBSCAN-SWA_21 336393 : 344000 8 Cyanophage(20.0%) NA NA
DBSCAN-SWA_22 348204 : 352121 3 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_23 361733 : 366596 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_24 372606 : 381234 5 Staphylococcus_phage(25.0%) tRNA,integrase attL 371064:371077|attR 388324:388337
DBSCAN-SWA_25 386675 : 387821 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_26 394286 : 408508 11 uncultured_Caudovirales_phage(25.0%) NA NA
DBSCAN-SWA_27 414799 : 424626 9 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_28 431762 : 446890 15 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 457414 : 459196 1 Cronobacter_phage(100.0%) NA NA
DBSCAN-SWA_30 470319 : 472167 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_31 477415 : 485163 5 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_32 499002 : 505796 6 Mollivirus(33.33%) NA NA
DBSCAN-SWA_33 511266 : 515278 6 Burkholderia_virus(33.33%) NA NA
DBSCAN-SWA_34 522998 : 524663 1 environmental_halophage(100.0%) NA NA
DBSCAN-SWA_35 534817 : 537220 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_36 547675 : 557645 10 Organic_Lake_phycodnavirus(20.0%) tRNA NA
DBSCAN-SWA_37 561609 : 563778 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_38 585452 : 586364 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_39 594501 : 597245 4 Caulobacter_phage(50.0%) protease NA
DBSCAN-SWA_40 601167 : 602160 1 Wolbachia_phage(100.0%) transposase NA
DBSCAN-SWA_41 607596 : 610059 1 Dickeya_phage(100.0%) NA NA
DBSCAN-SWA_42 614525 : 615290 1 Phage_NCTB(100.0%) NA NA
DBSCAN-SWA_43 627504 : 628815 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_44 632132 : 632762 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_45 637082 : 638513 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_46 642728 : 655961 13 Acinetobacter_phage(22.22%) NA NA
DBSCAN-SWA_47 667367 : 676910 10 Vibriophage(14.29%) transposase NA
DBSCAN-SWA_48 679979 : 681837 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_49 692068 : 703403 7 Catovirus(33.33%) NA NA
DBSCAN-SWA_50 707768 : 710530 3 Elephant_endotheliotropic_herpesvirus(33.33%) tRNA NA
DBSCAN-SWA_51 715255 : 717991 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_52 725761 : 729158 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_53 733891 : 745877 10 Bacillus_virus(42.86%) tRNA NA
DBSCAN-SWA_54 750730 : 752401 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_55 758379 : 765215 6 Hokovirus(25.0%) integrase attL 748269:748284|attR 775445:775460
DBSCAN-SWA_56 771239 : 776535 4 Burkholderia_phage(25.0%) transposase NA
DBSCAN-SWA_57 788630 : 791102 2 Stenotrophomonas_phage(50.0%) integrase attL 785333:785347|attR 789183:789197
DBSCAN-SWA_58 800054 : 806894 6 Organic_Lake_phycodnavirus(25.0%) transposase NA
DBSCAN-SWA_59 813772 : 823946 9 Bacillus_phage(25.0%) tRNA NA
DBSCAN-SWA_60 841254 : 843092 2 Agrobacterium_phage(50.0%) protease NA
DBSCAN-SWA_61 851144 : 851576 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_62 854918 : 858623 3 Rhizobium_phage(50.0%) NA NA
DBSCAN-SWA_63 863774 : 864407 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_64 873636 : 875892 2 Mimivirus(50.0%) NA NA
DBSCAN-SWA_65 906483 : 907668 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_66 915401 : 917477 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_67 923771 : 931345 7 Flavobacterium_phage(33.33%) NA NA
DBSCAN-SWA_68 954245 : 966206 4 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_69 971585 : 972380 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_70 976718 : 982652 6 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_71 1029424 : 1035773 5 Wolbachia_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_72 1052629 : 1053967 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_73 1058493 : 1067376 10 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_74 1075421 : 1078762 5 Lake_Baikal_phage(50.0%) NA NA
DBSCAN-SWA_75 1103575 : 1105523 2 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_76 1111803 : 1112787 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_77 1120328 : 1126240 10 uncultured_Caudovirales_phage(50.0%) tRNA,lysis NA
DBSCAN-SWA_78 1131472 : 1132465 1 Wolbachia_phage(100.0%) transposase NA
DBSCAN-SWA_79 1137643 : 1139089 1 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_80 1147484 : 1148807 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_81 1155625 : 1156516 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_82 1164838 : 1165831 1 Wolbachia_phage(100.0%) transposase NA
DBSCAN-SWA_83 1172308 : 1172932 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_84 1183853 : 1184603 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_85 1203068 : 1205663 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_86 1210867 : 1212759 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_87 1233101 : 1235337 2 Cronobacter_phage(50.0%) NA NA
DBSCAN-SWA_88 1238469 : 1240338 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_89 1245493 : 1254070 2 Tetraselmis_virus(50.0%) NA NA
DBSCAN-SWA_90 1259727 : 1261386 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_91 1279378 : 1283563 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_92 1288400 : 1289399 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_93 1298344 : 1302241 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_94 1311394 : 1312024 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_95 1319322 : 1322564 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_96 1329316 : 1331783 5 Macacine_betaherpesvirus(50.0%) integrase,transposase attL 1313755:1313770|attR 1336263:1336278
DBSCAN-SWA_97 1339769 : 1343130 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_98 1346409 : 1354366 7 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_99 1365469 : 1368424 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_100 1373040 : 1373886 1 Pandoravirus(100.0%) NA NA
DBSCAN-SWA_101 1384806 : 1386255 1 Brazilian_cedratvirus(100.0%) NA NA
DBSCAN-SWA_102 1389925 : 1390678 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_103 1394631 : 1395369 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_104 1399776 : 1400220 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_105 1408139 : 1409048 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_106 1416468 : 1424253 1 Enterobacterial_phage(100.0%) NA NA
DBSCAN-SWA_107 1439308 : 1454094 14 Klosneuvirus(14.29%) NA NA
DBSCAN-SWA_108 1472086 : 1472938 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1476688 : 1490330 13 Yellowstone_lake_phycodnavirus(16.67%) NA NA
DBSCAN-SWA_110 1497969 : 1498203 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_111 1502917 : 1509910 8 Mollivirus(25.0%) NA NA
DBSCAN-SWA_112 1516909 : 1520344 4 Moumouvirus(50.0%) tRNA NA
DBSCAN-SWA_113 1544419 : 1550457 5 Cyanophage(33.33%) NA NA
DBSCAN-SWA_114 1555066 : 1555609 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_115 1558665 : 1561758 4 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_116 1570812 : 1572787 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_117 1576600 : 1578328 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_118 1584504 : 1586983 2 Bacillus_virus(50.0%) protease NA
DBSCAN-SWA_119 1596125 : 1615038 14 Streptococcus_phage(11.11%) NA NA
DBSCAN-SWA_120 1622860 : 1624159 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_121 1629053 : 1630764 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_122 1642135 : 1647356 4 uncultured_Mediterranean_phage(66.67%) NA NA
DBSCAN-SWA_123 1654292 : 1654934 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_124 1669283 : 1675215 5 Enterococcus_phage(25.0%) tRNA NA
DBSCAN-SWA_125 1679333 : 1683906 6 Bacillus_phage(66.67%) tRNA NA
DBSCAN-SWA_126 1698472 : 1699738 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_127 1703195 : 1707926 4 Mycoplasma_phage(33.33%) transposase NA
DBSCAN-SWA_128 1718670 : 1719672 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_129 1723276 : 1724284 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_130 1730756 : 1731890 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_131 1737753 : 1743943 6 Vibrio_phage(25.0%) tRNA NA
DBSCAN-SWA_132 1748477 : 1760901 8 Tupanvirus(16.67%) NA NA
DBSCAN-SWA_133 1766568 : 1770584 3 Acinetobacter_phage(33.33%) NA NA
DBSCAN-SWA_134 1778132 : 1783830 6 Staphylococcus_phage(60.0%) NA NA
DBSCAN-SWA_135 1790948 : 1795822 3 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_136 1802097 : 1804324 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_137 1808783 : 1813630 3 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_138 1821000 : 1821720 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_139 1825368 : 1829826 5 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_140 1838767 : 1840063 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_141 1847344 : 1850292 2 Klosneuvirus(50.0%) tRNA NA
DBSCAN-SWA_142 1858358 : 1861046 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_143 1865532 : 1866828 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_144 1869870 : 1870473 1 Cassava_brown_streak_virus(100.0%) NA NA
DBSCAN-SWA_145 1875892 : 1876918 1 Haemophilus_virus(100.0%) integrase attL 1873269:1873283|attR 1883863:1883877
DBSCAN-SWA_146 1892385 : 1893009 1 Murmansk_poxvirus(100.0%) NA NA
DBSCAN-SWA_147 1899330 : 1902127 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_148 1921547 : 1926869 5 Bodo_saltans_virus(33.33%) tRNA NA
DBSCAN-SWA_149 1935895 : 1937506 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_150 1940787 : 1941741 1 Orpheovirus(100.0%) NA NA
DBSCAN-SWA_151 1946967 : 1951457 5 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_152 1959532 : 1960462 1 Listeria_phage(100.0%) integrase attL 1957185:1957199|attR 1971531:1971545
DBSCAN-SWA_153 1965948 : 1968477 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_154 1983069 : 1990181 8 Agrobacterium_phage(20.0%) NA NA
DBSCAN-SWA_155 1994179 : 1998551 2 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_156 2005543 : 2007784 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_157 2011422 : 2019357 7 Chrysochromulina_ericina_virus(16.67%) tRNA NA
DBSCAN-SWA_158 2023008 : 2024052 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_159 2027938 : 2041188 18 Mannheimia_phage(55.56%) integrase attL 2031577:2031592|attR 2035628:2035643
DBSCAN-SWA_160 2045594 : 2073938 49 Mannheimia_phage(64.52%) tail,transposase,capsid,terminase NA
DBSCAN-SWA_161 2080053 : 2084796 3 Vibrio_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage