CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040243	Glaesserella parasuis strain HPS-1 chromosome, complete genome	4 crisprs	PD-DExK,cas2,cas3,DEDDh,WYL,DinG	3	1	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040243_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040243_1

9892-10011

Orphan

Consensus_repeat	Method
TCAAAAGCGAGCGGAGAACAATCTATTGCCTTAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040243_1

>merge|NZ_CP040243|1|9892-10011|CRISPRCasFinder
TCAAAAGCGAGCGGAGAACAATCTATTGCCTTAGGCGGACAAGCCAATTCGACAAATAATCAAACAATTGCCATCGGGAGTCAGTCAAAAGCGAGCGGAGAACAATCTATTGTCTTAGGC

>NZ_CP040243|1|1|9892-10011|CRISPRCasFinder
TCAAAAGCGAGCGGAGAACAATCTATTGCCTTAGGC	GGACAAGCCAATTCGACAAATAATCAAACAATTGCCATCGGGAGTCAG
TCAAAAGCGAGCGGAGAACAATCTATTGTCTTAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040243.1\|WP_005711085.1\|7797_8241_+\|FMN-binding-protein-MioC	unknown	unknown	gnl\|CDD\|181608
NZ_CP040243.1\|WP_010786416.1\|24478_25225_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP040243.1\|WP_015939814.1\|15518_16325_-\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|182987
NZ_CP040243.1\|WP_010786424.1\|16327_17338_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP040243.1\|WP_149350508.1\|18570_19464_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|181614
NZ_CP040243.1\|WP_015939815.1\|17676_18393_-\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013
NZ_CP040243.1\|WP_016528640.1\|112_1447_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP040243.1\|WP_005711093.1\|3124_3418_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP040243.1\|WP_016528639.1\|3513_4293_+\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|226621
NZ_CP040243.1\|WP_015939816.1\|19562_19910_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|183219
NZ_CP040243.1\|WP_005711096.1\|1456_2560_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP040243.1\|WP_010786429.1\|2591_3125_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP040243.1\|WP_005710894.1\|19986_20598_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NZ_CP040243.1\|WP_010786419.1\|20681_21293_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP040243.1\|WP_010786418.1\|21328_21766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378048
NZ_CP040243.1\|WP_149350505.1\|4384_5641_+\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|226911
NZ_CP040243.1\|WP_149350509.1\|22066_23959_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP040243.1\|WP_149350506.1\|6039_7431_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780

Protein	Function_ID	Function_description	E-value
NZ_CP040243.1\|WP_005711085.1\|7797_8241_+\|FMN-binding-protein-MioC	gnl\|CDD\|181608	PRK09004, PRK09004, FMN-binding protein MioC; Provisional.	6.25001e-83
NZ_CP040243.1\|WP_010786416.1\|24478_25225_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.80105e-73
NZ_CP040243.1\|WP_015939814.1\|15518_16325_-\|serine-O-acetyltransferase	gnl\|CDD\|182987	PRK11132, cysE, serine acetyltransferase; Provisional.	0
NZ_CP040243.1\|WP_010786424.1\|16327_17338_-\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP040243.1\|WP_149350508.1\|18570_19464_-\|cytidine-deaminase	gnl\|CDD\|181614	PRK09027, PRK09027, cytidine deaminase; Provisional.	1.20111e-170
NZ_CP040243.1\|WP_015939815.1\|17676_18393_-\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	0
NZ_CP040243.1\|WP_016528640.1\|112_1447_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040243.1\|WP_005711093.1\|3124_3418_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	5.21747e-56
NZ_CP040243.1\|WP_016528639.1\|3513_4293_+\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.6617e-59
NZ_CP040243.1\|WP_015939816.1\|19562_19910_-\|dihydroneopterin-aldolase	gnl\|CDD\|183219	PRK11593, folB, bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase.	9.74576e-42
NZ_CP040243.1\|WP_005711096.1\|1456_2560_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	2.41336e-175
NZ_CP040243.1\|WP_010786429.1\|2591_3125_+\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	3.0292e-09
NZ_CP040243.1\|WP_005710894.1\|19986_20598_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	1.77924e-93
NZ_CP040243.1\|WP_010786419.1\|20681_21293_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.49795e-91
NZ_CP040243.1\|WP_010786418.1\|21328_21766_-\|hypothetical-protein	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	8.98672e-40
NZ_CP040243.1\|WP_149350505.1\|4384_5641_+\|DUF21-domain-containing-protein	gnl\|CDD\|226911	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism].	0
NZ_CP040243.1\|WP_149350509.1\|22066_23959_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP040243.1\|WP_149350506.1\|6039_7431_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0

>NZ_CP040243.1|WP_005711085.1|7797_8241_+|FMN-binding-protein-MioC
MSKSICIITGSTLGGAEYVADHLNDVLTEQGYQVGLFNQAELADIQHQTALLVVTSTHGAGELPENIQPLFQQLAESNLDLSQMKFGVVGLGSSDYDTFCNAVNLVEQGLTAKGATQVCESLRIDVVNNFDHDGSAEEWLPAFTSTL
>NZ_CP040243.1|WP_149350506.1|6039_7431_-|signal-recognition-particle-protein
MFENLSDRLSKTLKNITGKGRLTEDNIKDTLREVRMALLEADVALPVVREFINKVKERAIGEEVNKSLTPGQEFLKIVQAELEKAMGEANEGLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLKDRHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFFPTETSQKPVEIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHSVLNPIETLFTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDLQRSVDQEKAEKMGAKFKKGDDFTLDDFREQLVEMKKMGGMMSMLDKLPGAKNLPDHVKNQVDDKMFIKMEAIINSMTLKERANPDIIKGSRRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKMRKGGMAKMMRGMKGMMGGGLGGLGALGGMFRKR
>NZ_CP040243.1|WP_149350505.1|4384_5641_+|DUF21-domain-containing-protein
MDTIPLSSLFITLAILLLLSAFFSGSETGLMSLNRYRMRHLADKGHKGAKLAEKLLSRTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLTFVMLVFSEILPKTIAALYPERVGFLVSYVLVPLQKVLMPVVFFMNVIINGLMKLFRIRKSEKSGLSAEELRGVVLEAGKFIPTAHQEMLVSILDMEKVTVDDIMVPRNDIGSIDIDDDWKSIMRQLTGAAHAHVVIYKSDMDKNLLGMLRVREAFRLMLERNEFTKEQLIRAVDEIYFIPEGTPLNTQLMNFKNNKKRIGLVVDEYGDIKGLITLEDILEEIVGEFTTSTAPSLEEEVKPQSDGSVLIEGSANLRDLNKLFDWNLPLDEARTFNGLILEHLEKIPDEDTQFTLLNLKVTVLEVSDNMVKLARVEPI
>NZ_CP040243.1|WP_016528639.1|3513_4293_+|cytochrome-c-biogenesis-protein-CcsA
MLFAVLTIVAYLGALLWIMPTLAHLDTDKQPNIRAVLLLGLVAVLCHIISISQHLVVNGGQNFTIVNVASLISVIISAVATFALTRWKTVWFPLSVIYPLGIVTVTLSTFVAGSFIKQLSENLGLMLHLGIAIASYALFFIALLYAAQLKWLDKNLKSKKMAFSPVVPPLMTVERHFFTLTMVAQGLLTVALVTGMIYLHNFFAPEHIHKAIFSFIAWIVYNILLLGQWKLRWRGNRVLIYSISGMILLSVAYFGSRMV
>NZ_CP040243.1|WP_005711093.1|3124_3418_+|YggU-family-protein
MQAVEFCENPQGIRLRIFLQPKASRDQIVGLHDNELKIAITAPPIDGQANAHLLKYLSKLFKVPKSSIVLEKGELQRHKQIFVPEPKLIPKEIEVLG
>NZ_CP040243.1|WP_010786429.1|2591_3125_+|YggT-family-protein
MEYLAPFIQIVVGFFSFMLVLRTWLQFCRVDPYMPISQTLMRLTNPVLNPLSKLIPTVKGINFAALLLAAGIVALQFVLFGVDVPRAVLIGLLSIVKTFGQILFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGIIRKILPKTGMLDFSVMVLGFALLFINSLFYQIFGQLWAVA
>NZ_CP040243.1|WP_005711096.1|1456_2560_+|DNA-polymerase-III-subunit-beta
MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELFEAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDEDRVFIRADRSKFNLATLPASDYPSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLRSVATDGHRLAVCTMALNQELLTHSVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVFTSKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKITANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQRVRISLVDASSSCLIEDCDNATAEYVIMPMRL
>NZ_CP040243.1|WP_016528640.1|112_1447_+|chromosomal-replication-initiator-protein-DnaA
MSSLWSDCLTHLQAKVSPTDYSTWLRPLQASATSSELVLYAHNQFVATWVKDKFLGEIVTLARSLSKNEQLQVEMRVGIKPAEQAVTSVTPTATPPQETQATALRSGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESHCNPFSLYGGTGLGKTHLLHAIGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAILMKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVREALKDLIASYDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLSS
>NZ_CP040243.1|WP_015939814.1|15518_16325_-|serine-O-acetyltransferase
MTNQPLDLIWQNIRNEAQELVNSEPMLASFFHATILKHHHLGDALSYILANKLANAIMPAIALKEIIEEAYQADPQIIASAACDIEAVRTRDPAVDKWSTPLLYLKGYHALQSYRVTHYLWQQGRKALAIYLQNEISVAFDVDIHPAARVGCGIMLDHATGIVVGETAVIENDVSILQGVTLGGTGKEHGDRHPKIREGVMIGAGAKILGNIEIGRYSKIGANSVVLQAVPEYATAAGVPARIIGHSQQQKPAFEMNQYFDDTNKEIN
>NZ_CP040243.1|WP_010786424.1|16327_17338_-|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MEKIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPQKMAQMAVRRMSEEFLPDIPFPEALEIESDLATALTRSKDILIVVPSHVFSEVLQQIQPLLTSEHRIMWATKGLERDTGRLLQEVALQILGDRYPLAVLSGPTFAKELAQGLPTAIALSSTDPQFADEMQQRIHCSKAFRVYLNSDMVGVQLGGAIKNVIAIGTGISDGMGFGANARTALITRGLAEISRLGLSLGANPTTFIGMAGLGDLVLTCTDNQSRNRRFGLMLGQGRNAQEAMAEIGQVVEGFYNTKEAYLLAQKQGIEMPIVEQIYQILFCGKHASDVAKTLLGRERKGE
>NZ_CP040243.1|WP_015939815.1|17676_18393_-|two-component-system-response-regulator-ArcA
MQNPQILIVEDEAVTRSTLKSIFEAEGYDVFEATDGNEMNTILDNHEINLVIMDINLPGKNGLMLARELRENTDIALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLQRTMAEKDKTVKDPHNTESYRFNGWTLDVNSRSLINPENEVIKLPRSEFRALLHFCENPGKIQTREDLLKQMKGRELKPHDRTVDVTIRRIRKHFEDHPNTPEIIVTIHGEGYRFCGELV
>NZ_CP040243.1|WP_149350508.1|18570_19464_-|cytidine-deaminase
MPTMIDIQERLIELVAEKQSPVVQAVVEQLIRQNNKAYFSAEQVTTFCQTFNLSPVELALECLPIAACYARVPVSHFFVGAVAIGKSGNFYFGANQEFESDAMQQTVHAEQSAVSHAWIAGETALTDMVVNYTPCGHCRQFMNELNSAKQLKIHLPHSQNNLLHSYLPDAFGPKDLQIDKVLFDPQQNGFEASGDALQQAAISAANLAYAPYSKAVSGVALQCGEQIITGRYAENAAFNPSFLPLQSALNFRRMQGLEGVVISRVILAEKYAVLSHRAMTESLVKNLLNLPLEYVKL
>NZ_CP040243.1|WP_015939816.1|19562_19910_-|dihydroneopterin-aldolase
MTDKVFIHELTAFASIGAYEWEHTIKQRLVFNIEMAWDFSRTVADDDVQYCLNYAEVSQKILDFVENTPFKLVETVAYRVAELLQHEFGVKSLRIELHKPKAVAQSSSVGVIVER
>NZ_CP040243.1|WP_005710894.1|19986_20598_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSVIAYLLILGAYLLGSISSAVIFCRLAGLPDPREHGSHNPGATNVLRIGGKLSALGVLMADILKGMLPVSLGFYLELPISVIGFIALAACLGHIFPVFFKFRGGKGVATAFGAIIPMGYSVAGLAVGTWLFVFLISGYSSLSAVITALIVPLYIWWFSSELTFPVALVCCLLVYRHHDNIQRLWRGQEDRGWKKKHSRQNSY
>NZ_CP040243.1|WP_010786419.1|20681_21293_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MLAKLDRLLSQANIPLTDQQKQQLVDFVKLLDKWNKAYNLTSVRNPDEMLVKHIMDSLVVSQHLQGQQFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRITFIKNAIRELKLTNVTPVLSRVEEYQEQQFDGVLSRAFASLNDMVDWCYHLPNTSGHFYALKGQYQPEELAEVSKPIELVDVIKLNVPELVGERHLVVLNR
>NZ_CP040243.1|WP_010786418.1|21328_21766_-|hypothetical-protein
MLEQLEISSLENAFSSLNETLAELADQQWFNQQKPIIQDTLIAGAIQKFEFVYELSLKMMKRQLKLMAISEDEIEAENFRDILRDAAKNGLIENIDDWIGYRKMRNITSHTYDQNKALEVYNGIADFLDSSQFLLEQLREWNSDK
>NZ_CP040243.1|WP_149350509.1|22066_23959_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MIYREIYDVIVVGGGHAGTEAALAPARMGLKTLLLTHNVDTLGQMSCNPAIGGIGKGHLVKEIDAMGGLMATATDKAGIQFRTLNSSKGPAVRATRAQADRVLYRQAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKAKSVILTAGTFLAGKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQHGDDVLPVMSFMGSVEQHPRQIPCYITHTNEQTHDLIRNSLDRSPMYTGIIEGIGPRYCPSIEDKVMRFSDRTSHQIYLEPEGLTTIEVYPNGISTSLPFDVQIGIVNSMKGLENTRIIKPGYAIEYDYFDPRDLKPTLETKAIDCLFFAGQINGTTGYEEAAAQGLLAGINAGLQVQGKEAWFPTRDLAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADARLTPIAHQFGLIDEARWTRFNEKMENIEKEKARLKQTWAHLQMANLVEVNALLNSPLAREASGEDLIRRPEVTYEALTQIAPFAPAIEDKEAAEQVEISIKYQGYIEHQQQEIERHKRHENTQIPAEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGMLKRGEL
>NZ_CP040243.1|WP_010786416.1|24478_25225_+|DeoR/GlpR-transcriptional-regulator
MQHRQQLILTYIETYQEASVQELATHLNVSLETIRRDLNKMAKEGLLYRTHGRAVSHKNRDIGRSFDVRRRMNSDVKKSIAENVLEHFFAGAVIGLDASSSSWNFAQLLPDLPCTVVTSSMHNIRALANKTSIEIIATGGVYSAKYDAFYGSLSGHLLSRLNIDIAICSCTGIADGIVWESNEMNAIAKRKMLAASKKVYLLADHSKFERKDLIQLCDLSTIHHLFTNRCPPDSIQMLCRQHQINITI

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Crispr_ID: NZ_CP040243_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040243_2

67926-68085

Orphan

Consensus_repeat	Method
TTCACCCCTAGGCCCTGCTGGACC	CRISPRCasFinder

2 spacers

PD-DExK

The CRISPR arrays of NZ_CP040243_2

>merge|NZ_CP040243|2|67926-68085|CRISPRCasFinder
TTCGCCTCTATCGCCTTTTGGACCTGTATCTCCTTTAGGACCCGCTTGTCCTGGATCGCCTTTATCCCCCTTAGGACCAGTTGCACCCGCAGGACCTTGAGGGCCCACTGGTCCTGCCTCTCCTTTTGGTCCTGCCTCTCCTTTTGGACCTGCAGGACCA

>NZ_CP040243|2|2|67926-68085|CRISPRCasFinder
TTCGCCTCTATCGCCTTTTGGACC	TGTATCTCCTTTAGGACCCGCTTGTCCTGGATCGCCTTT
ATCCCCCTTAGGACCAGTTGCACC	CGCAGGACCTTGAGGGCCCACTGGTCCTGCCTCTCCTTTTGGTCCTGC
CTCTCCTTTTGGACCTGCAGGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040243.1\|WP_149350524.1\|71237_72026_-\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP040243.1\|WP_005712670.1\|75364_75877_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP040243.1\|WP_149350520.1\|60349_62467_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP040243.1\|WP_075630738.1\|78488_78869_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040243.1\|WP_075620798.1\|57686_58319_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350290
NZ_CP040243.1\|WP_005711000.1\|63798_64746_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP040243.1\|WP_149350519.1\|58559_59627_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_CP040243.1\|WP_149350530.1\|78152_78374_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350521.1\|62538_62832_+\|DUF5377-family-protein	unknown	unknown	gnl\|CDD\|375144
NZ_CP040243.1\|WP_149350529.1\|77462_77723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350528.1\|77009_77315_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_115636941.1\|59747_60323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350525.1\|72025_73012_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP040243.1\|WP_149350518.1\|54625_55957_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP040243.1\|WP_005710975.1\|57338_57605_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226919
NZ_CP040243.1\|WP_149350526.1\|73900_75028_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
NZ_CP040243.1\|WP_005712673.1\|73011_73848_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
NZ_CP040243.1\|WP_149350522.1\|62832_63741_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP040243.1\|WP_149350527.1\|75888_76815_+\|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl\|CDD\|182998
NZ_CP040243.1\|WP_016528610.1\|56379_57285_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473

Protein	Function_ID	Function_description	E-value
NZ_CP040243.1\|WP_149350524.1\|71237_72026_-\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	1.12077e-127
NZ_CP040243.1\|WP_005712670.1\|75364_75877_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	5.19449e-89
NZ_CP040243.1\|WP_149350520.1\|60349_62467_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP040243.1\|WP_075630738.1\|78488_78869_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.61454e-12
NZ_CP040243.1\|WP_075620798.1\|57686_58319_+\|hypothetical-protein	gnl\|CDD\|350290	cd18723, PIN_LabA-like, uncharacterized subfamily of the LabA-like PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. The LabA-like PIN domain family includes Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. It also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes, human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into this family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_7.	1.63186e-22
NZ_CP040243.1\|WP_005711000.1\|63798_64746_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP040243.1\|WP_149350525.1\|72025_73012_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.29983e-86
NZ_CP040243.1\|WP_149350521.1\|62538_62832_+\|DUF5377-family-protein	gnl\|CDD\|375144	pfam17347, DUF5377, Family of unknown function (DUF5377). This is a family of unknown function found in Pasteurellaceae.	8.75316e-61
NZ_CP040243.1\|WP_149350519.1\|58559_59627_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.08541e-65
NZ_CP040243.1\|WP_149350518.1\|54625_55957_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP040243.1\|WP_005710975.1\|57338_57605_+\|hypothetical-protein	gnl\|CDD\|226919	COG4545, COG4545, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones].	1.15542e-38
NZ_CP040243.1\|WP_149350526.1\|73900_75028_-\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	5.99852e-133
NZ_CP040243.1\|WP_005712673.1\|73011_73848_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.63435e-89
NZ_CP040243.1\|WP_149350522.1\|62832_63741_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.08804e-157
NZ_CP040243.1\|WP_149350527.1\|75888_76815_+\|ADP-glyceromanno-heptose-6-epimerase	gnl\|CDD\|182998	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional.	0
NZ_CP040243.1\|WP_016528610.1\|56379_57285_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0

>NZ_CP040243.1|WP_005711000.1|63798_64746_+|RNA-polymerase-sigma-factor-RpoH
MKKFDELEVDDTEFIDSKDAELVDIDNNASNICITNNMLVPQGATLDSYIRMANQYPVLTAEQEKELAERFYYDEDLDAAKQLIMSHLRFVVYIARGYLGYGLPLADLIQEGNIGLMKAVKRFNPEIGVRLASFAVHWVKAEIHEYVLKNWRIVKVATTKSQRKLFFNLRKNKQRLAWFNEEEIRKVAEELGVSTDDVKEMESRMVGQDIGFDTSVGDDDDDNYVPSMYLEDESSNFVDELEYEEYSGRATAQLAYALAQLDERSQNIIKTRWLDENKATLHELAAQYNISAERVRQLENQALKKIKDVITYDIT
>NZ_CP040243.1|WP_149350522.1|62832_63741_+|tyrosine-recombinase-XerC
MSMSNFLYHQTQPYWDFLRIEKQVSPHTLSNYQRQLRVVCKMLQQAEITRWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRNKY
>NZ_CP040243.1|WP_149350521.1|62538_62832_+|DUF5377-family-protein
MSVKSEVLFSNQWDVRISDPGLEGAMSHYFETVYLNLTAAHIDANKVSYEFTRKVENEVQTHCIFHSVDELFKFLAEYLGPVALGNIGVKIGKLGLA
>NZ_CP040243.1|WP_149350520.1|60349_62467_+|glycine--tRNA-ligase-subunit-beta
MTTQNFLAEIGTEELPPKALKKLATAFAENVEAELNQAGLSFDKVEWFAAPRRLAVKVLGLATAQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITVEQAERIATDKGEWLVHRAVIEGQPTKNLLVGIISQALAKLPIPKTMRWGDKTEQFVRPVHTVTLLLGDELIEGEILGVASGTTVRGHRFLGEREFQISHADQYPALLKEKGSVVADFNERKALILAKAQEKATALGGVADIEEDLLDEVTSLVEYPNVLAAKFEERFLAVPAEALVYTMKGDQKYFPIYDKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFFKTDLKQRLEDQLPRLETVLFQQQLGTLRDKTTRIEQLAGEIAKQIGADETKAKRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDELPKSLVASSVALADKFDTLTGIFGIGQQPKGSADPFALRRAALGALRIIVENNLFLGLRSLIRISENLFGNKLTNKNVEQEVENFILDRLPSWYQEKGIRTDIISAVRARHLSKPNRDLPYDTYLSDFNSRVLAVSHFLTLDSAEDLIALYKRASNILTKAVHSGEINLEELGVVDPALLVEPAEKALAEAVIALKKEVQPLIAQGDYTAVLDKLASLRQPVDSFFDNVMVNAEDQKLRQNRLAILNTLQNLFLQVADISLLQ
>NZ_CP040243.1|WP_115636941.1|59747_60323_+|hypothetical-protein
MKKVFIIIFSCILFLTSCSTKNTFVQGEITHAKLFDNYAAIQISGESYFLNSTNKVEMKKFKDFYHEYYSKVDKQALALHLLQRSYDKKSGDFTYFFFLEKNKLDQATISKLEKIYGAKPYQDKYIMLGFSAKTQSYYKKDLLEDAYKLEHPIPIVITREIPFEETGGGQFLLMITMPIWVPFMILFGLKV
>NZ_CP040243.1|WP_149350519.1|58559_59627_+|DUF1016-family-protein
MTDKQLITQAEHSKAFITEISQLIHSSKQRMTVAVNAELTLLYWHIGKRINDYILQGERAKYGEDIIPKLSTHLTKQFGKGWSKRNLAQMVKFSSTFSDIQILQTLSAKLSWSHFVQLSYIDEPIKRDFYATMAAQERWSVRTLDDRIGSLLFERTAISKKPDETIVQELALLREKGEYNQSLVLKDPYILDFLDLNDRYMEKDLEDAILREIEQFLLELGAGFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTEAFKHAHKSQMELYLAWLAKYEQEADENPPLGIILCTSKKQEQVELLDLKQSDIHIAEYTTVLPSKEVLEQRLHLAVERAKQRFTVHPSTDALG
>NZ_CP040243.1|WP_075620798.1|57686_58319_+|hypothetical-protein
MKYAFIDYENVNSLDGLNLQEYDRTFLFIGSVNNQLRLTEKFNDEINITLITVKDISKNNVDFHLTYYLGKLDISTDKNIEFHILSNDKGFDGICQFIQHQREPRICFRKAINQTEEKIALPLLPNQATKVNNAEQEKISQVVQEFKAFISKVQKRSLPVKLATLKNSIYNQTSLKGVDKKEADKLLPKIIDQLVQKKLIKVNENKVSYP
>NZ_CP040243.1|WP_005710975.1|57338_57605_+|hypothetical-protein
MTKPILYFAHWCPDTAPFVAELQRLGVDYEAVDITQSGANFKPFLKLRDRHPAFDNAKANGYIGIPALVLEDERVVLELGELERFCNQ
>NZ_CP040243.1|WP_016528610.1|56379_57285_+|glycine--tRNA-ligase-subunit-alpha
MTAKFNVKTFQGMILALQDYWANQGCTVVQPFDMEVGAGTSHPMTCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDSLKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYANTDFLFYCFDQYEKEVQELLALEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKGVAEAYYASREALGFPGCK
>NZ_CP040243.1|WP_149350518.1|54625_55957_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSSAPNIGFVSLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAEQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHSYEAVMKHVHKYVPKPEYNPYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMGVWIRLHYVYPYPHVDDLIPLMAQGKLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVDGAVATEMEDQVPEEVKEERFHRFMQLQQQISADRLQQKIGRTLSVIVDEIDKEGIIGRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWGTC
>NZ_CP040243.1|WP_149350524.1|71237_72026_-|heme-ABC-transporter-ATP-binding-protein
MLQSDRLLIADKLTLTLNQRLLLDNISLVLPQGKMTVLIGPNGAGKSTLLRLLSGYLSAKSGEVRLYNKGIDQFSLSELAQHRAVMRQHSLLNFPFSVEEVIRMGGYHRSQTEVDQHLEEVITVTECTALRDKAYRQLSGGEQQRTQLARALLQLWSEDMRGKLLFLDEPTSAFDLYHQQHCLRLLKNLCQKKGLTVCCILHDLNLAALYGDQLILLAEQHIQACGSATEVIRKEIIQKWYKAEVAVFPHFATQAPQIQLSL
>NZ_CP040243.1|WP_149350525.1|72025_73012_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSRSLWLISLFIVLLLVALIATNVGAFSLTWQDLIAADLNSNVWQIWLNIRLPRILLAIIVGLALAVSGTVFQGLFHNPMADPALIGVNSGASLAVAFSILLPNILPTAWGIYSTMLFAFMGSLAVTGFIYALSHRTQASMQKLLLAGIAVNALCFAIVGMLTYISNDQQLRQFTLWTMGSLGQAQWQPLFIASTLILPACLYLFTLAQKLNVLQLGDEEAHYLGINVLQLKRLLMLLGALLVGSAVAVSGAIGFIGLVIPHLVRFKLGADHRWVLPASALCGAILLLIADTFARTAFAPAELPVGMITSFLGAPYFLWLVIRYREVN
>NZ_CP040243.1|WP_005712673.1|73011_73848_-|ABC-transporter-substrate-binding-protein
MPFIRFFCFLTACFAISITAQATNERVISIGGDVTEIIYALNAEQNLIGRDSTSLNPPQVKALPDIGYMRQLNTEGILALKPTKVIASEVAQPSVVLEQLKSAGIQVELVPLKYSPESVVEKIKRIGDIVGKPQQAAALADKFTQEINAVNKSPLDVNILFILNRAGIHQMAAGKGTVADTAIRLIGAKNAMKDAVRFAPISQEGMISANPDLIVLSHLSLENFKSPDEIWTLPGLAHTNAGKHKRLVVVDDIAFLAFGLTMGQELQKMRTAAEQVVK
>NZ_CP040243.1|WP_149350526.1|73900_75028_-|DNA-protecting-protein-DprA
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQHWFNPEHKWIDQALQWAEQDQQRILTLFDEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAVNENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITARYALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENVEDILDAIAWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPELTACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT
>NZ_CP040243.1|WP_005712670.1|75364_75877_+|peptide-deformylase
MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVITIDIEGDKTNQIVLINPEILESSGETGIEEGCLSIPGCRALVPRKEKLTVKALNREGQTFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQIERAK
>NZ_CP040243.1|WP_149350527.1|75888_76815_+|ADP-glyceromanno-heptose-6-epimerase
MIIVTGGAGFIGSNIVKALNAIGRTDILVVDNLKNGEKFVNLVDLDIADYCDKEDFIASIIAGDDFGEIDAIFHEGACSATTEWDGKYLMQNNYEYSKELLHFCLDRQIPFFYASSAATYGGRSDNFIEDRKFEQPLNVYGYSKFLFDEYVRKILPEAESPVCGFKYFNVYGPREQHKGSMASVAFHLNTQILKGENPKLFEGSETFLRDFVYVEDVAQVNIWAWQNRISGIFNLGTGNAESFRAVADAVLAFHQKGQIETIPFPDHLKSRYQTFTQADLTKLRAAGYDKPFKTVAEGTKAYMEWLNR
>NZ_CP040243.1|WP_149350528.1|77009_77315_+|hypothetical-protein
MPALKQHLSVVFGDEDLDNQARDQNQLQRNYRSLLSRHKKYDSKQIRNDNASLALRWSKGVKALGIDTDVDLGIRSGTDIFLRFKVAKTWQHNEVFSTRLE
>NZ_CP040243.1|WP_149350529.1|77462_77723_+|hypothetical-protein
MYRQHDFAGYKKLSYGLFVGGNINKKKADLTHYGPFINWRQPIWKDWVFIQPEVHFYNDKKQNRKHHFGAFYDWKRFSNIFFRQTK
>NZ_CP040243.1|WP_149350530.1|78152_78374_-|hypothetical-protein
MPRMMAVDVEFADASFLQPLKITRRVILSKWIILKLNHFLNFEEMTPKHSYITIVKSELSSPEPPILKTTLYK
>NZ_CP040243.1|WP_075630738.1|78488_78869_-|helix-turn-helix-transcriptional-regulator
MNLQFINDQNNNPLFVVLPITEYNRLKECEAQLTDNEEEWESLPYEQSDNDDVLIPHEVVTAMIKHNLNHLGAWRIYRNLSQQEVAELTGLSQSAISQMERSDSRPQKKTLERFSKIYDCDVKQMY

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Crispr_ID: NZ_CP040243_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040243_3

68394-68552

Orphan

Consensus_repeat	Method
TTCACCCCTAGGCCCTGCTGGACC	CRISPRCasFinder

2 spacers

PD-DExK

The CRISPR arrays of NZ_CP040243_3

>merge|NZ_CP040243|3|68394-68552|CRISPRCasFinder
TTCACCCCTAGGCCCTGCTGGACCTTGAGCACCGGTTGGACCCGCAGGTCCTCGCGGTCCTTCTGGACCCACTGGACCAGCTTCACCCCTAGCCCCTGCTGGACCAGCTGCACCCGCAGGACCAGCTTCTCCTCGCTCACCCCTAGGCCCCATTGGACC

>NZ_CP040243|3|3|68394-68552|CRISPRCasFinder
TTCACCCCTAGGCCCTGCTGGACC	TTGAGCACCGGTTGGACCCGCAGGTCCTCGCGGTCCTTCTGGACCCACTGGACCAGC
TTCACCCCTAGCCCCTGCTGGACC	AGCTGCACCCGCAGGACCAGCTTCTCCTCG
CTCACCCCTAGGCCCCATTGGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040243.1\|WP_149350524.1\|71237_72026_-\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422
NZ_CP040243.1\|WP_005712670.1\|75364_75877_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP040243.1\|WP_149350520.1\|60349_62467_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NZ_CP040243.1\|WP_075630738.1\|78488_78869_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040243.1\|WP_075620798.1\|57686_58319_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350290
NZ_CP040243.1\|WP_005711000.1\|63798_64746_+\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP040243.1\|WP_149350519.1\|58559_59627_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_CP040243.1\|WP_149350530.1\|78152_78374_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350521.1\|62538_62832_+\|DUF5377-family-protein	unknown	unknown	gnl\|CDD\|375144
NZ_CP040243.1\|WP_149350529.1\|77462_77723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350528.1\|77009_77315_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_115636941.1\|59747_60323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_149350525.1\|72025_73012_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP040243.1\|WP_149350518.1\|54625_55957_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP040243.1\|WP_005710975.1\|57338_57605_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226919
NZ_CP040243.1\|WP_149350526.1\|73900_75028_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|236747
NZ_CP040243.1\|WP_005712673.1\|73011_73848_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238569
NZ_CP040243.1\|WP_149350522.1\|62832_63741_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP040243.1\|WP_149350527.1\|75888_76815_+\|ADP-glyceromanno-heptose-6-epimerase	unknown	unknown	gnl\|CDD\|182998
NZ_CP040243.1\|WP_016528610.1\|56379_57285_+\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473

Protein	Function_ID	Function_description	E-value
NZ_CP040243.1\|WP_149350524.1\|71237_72026_-\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	1.12077e-127
NZ_CP040243.1\|WP_005712670.1\|75364_75877_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	5.19449e-89
NZ_CP040243.1\|WP_149350520.1\|60349_62467_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NZ_CP040243.1\|WP_075630738.1\|78488_78869_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.61454e-12
NZ_CP040243.1\|WP_075620798.1\|57686_58319_+\|hypothetical-protein	gnl\|CDD\|350290	cd18723, PIN_LabA-like, uncharacterized subfamily of the LabA-like PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. The LabA-like PIN domain family includes Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. It also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes, human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into this family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. Matelska et al. recently classified PIN-like domains into distinct groups; this subgroup includes some sequences belonging to one of these, PIN_7.	1.63186e-22
NZ_CP040243.1\|WP_005711000.1\|63798_64746_+\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	0
NZ_CP040243.1\|WP_149350525.1\|72025_73012_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.29983e-86
NZ_CP040243.1\|WP_149350521.1\|62538_62832_+\|DUF5377-family-protein	gnl\|CDD\|375144	pfam17347, DUF5377, Family of unknown function (DUF5377). This is a family of unknown function found in Pasteurellaceae.	8.75316e-61
NZ_CP040243.1\|WP_149350519.1\|58559_59627_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	1.08541e-65
NZ_CP040243.1\|WP_149350518.1\|54625_55957_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP040243.1\|WP_005710975.1\|57338_57605_+\|hypothetical-protein	gnl\|CDD\|226919	COG4545, COG4545, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones].	1.15542e-38
NZ_CP040243.1\|WP_149350526.1\|73900_75028_-\|DNA-protecting-protein-DprA	gnl\|CDD\|236747	PRK10736, PRK10736, DNA-protecting protein DprA.	5.99852e-133
NZ_CP040243.1\|WP_005712673.1\|73011_73848_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238569	cd01149, HutB, Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	8.63435e-89
NZ_CP040243.1\|WP_149350522.1\|62832_63741_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	7.08804e-157
NZ_CP040243.1\|WP_149350527.1\|75888_76815_+\|ADP-glyceromanno-heptose-6-epimerase	gnl\|CDD\|182998	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional.	0
NZ_CP040243.1\|WP_016528610.1\|56379_57285_+\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0

>NZ_CP040243.1|WP_005711000.1|63798_64746_+|RNA-polymerase-sigma-factor-RpoH
MKKFDELEVDDTEFIDSKDAELVDIDNNASNICITNNMLVPQGATLDSYIRMANQYPVLTAEQEKELAERFYYDEDLDAAKQLIMSHLRFVVYIARGYLGYGLPLADLIQEGNIGLMKAVKRFNPEIGVRLASFAVHWVKAEIHEYVLKNWRIVKVATTKSQRKLFFNLRKNKQRLAWFNEEEIRKVAEELGVSTDDVKEMESRMVGQDIGFDTSVGDDDDDNYVPSMYLEDESSNFVDELEYEEYSGRATAQLAYALAQLDERSQNIIKTRWLDENKATLHELAAQYNISAERVRQLENQALKKIKDVITYDIT
>NZ_CP040243.1|WP_149350522.1|62832_63741_+|tyrosine-recombinase-XerC
MSMSNFLYHQTQPYWDFLRIEKQVSPHTLSNYQRQLRVVCKMLQQAEITRWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKANKHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRNKY
>NZ_CP040243.1|WP_149350521.1|62538_62832_+|DUF5377-family-protein
MSVKSEVLFSNQWDVRISDPGLEGAMSHYFETVYLNLTAAHIDANKVSYEFTRKVENEVQTHCIFHSVDELFKFLAEYLGPVALGNIGVKIGKLGLA
>NZ_CP040243.1|WP_149350520.1|60349_62467_+|glycine--tRNA-ligase-subunit-beta
MTTQNFLAEIGTEELPPKALKKLATAFAENVEAELNQAGLSFDKVEWFAAPRRLAVKVLGLATAQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITVEQAERIATDKGEWLVHRAVIEGQPTKNLLVGIISQALAKLPIPKTMRWGDKTEQFVRPVHTVTLLLGDELIEGEILGVASGTTVRGHRFLGEREFQISHADQYPALLKEKGSVVADFNERKALILAKAQEKATALGGVADIEEDLLDEVTSLVEYPNVLAAKFEERFLAVPAEALVYTMKGDQKYFPIYDKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFFKTDLKQRLEDQLPRLETVLFQQQLGTLRDKTTRIEQLAGEIAKQIGADETKAKRAGLLSKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDELPKSLVASSVALADKFDTLTGIFGIGQQPKGSADPFALRRAALGALRIIVENNLFLGLRSLIRISENLFGNKLTNKNVEQEVENFILDRLPSWYQEKGIRTDIISAVRARHLSKPNRDLPYDTYLSDFNSRVLAVSHFLTLDSAEDLIALYKRASNILTKAVHSGEINLEELGVVDPALLVEPAEKALAEAVIALKKEVQPLIAQGDYTAVLDKLASLRQPVDSFFDNVMVNAEDQKLRQNRLAILNTLQNLFLQVADISLLQ
>NZ_CP040243.1|WP_115636941.1|59747_60323_+|hypothetical-protein
MKKVFIIIFSCILFLTSCSTKNTFVQGEITHAKLFDNYAAIQISGESYFLNSTNKVEMKKFKDFYHEYYSKVDKQALALHLLQRSYDKKSGDFTYFFFLEKNKLDQATISKLEKIYGAKPYQDKYIMLGFSAKTQSYYKKDLLEDAYKLEHPIPIVITREIPFEETGGGQFLLMITMPIWVPFMILFGLKV
>NZ_CP040243.1|WP_149350519.1|58559_59627_+|DUF1016-family-protein
MTDKQLITQAEHSKAFITEISQLIHSSKQRMTVAVNAELTLLYWHIGKRINDYILQGERAKYGEDIIPKLSTHLTKQFGKGWSKRNLAQMVKFSSTFSDIQILQTLSAKLSWSHFVQLSYIDEPIKRDFYATMAAQERWSVRTLDDRIGSLLFERTAISKKPDETIVQELALLREKGEYNQSLVLKDPYILDFLDLNDRYMEKDLEDAILREIEQFLLELGAGFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTEAFKHAHKSQMELYLAWLAKYEQEADENPPLGIILCTSKKQEQVELLDLKQSDIHIAEYTTVLPSKEVLEQRLHLAVERAKQRFTVHPSTDALG
>NZ_CP040243.1|WP_075620798.1|57686_58319_+|hypothetical-protein
MKYAFIDYENVNSLDGLNLQEYDRTFLFIGSVNNQLRLTEKFNDEINITLITVKDISKNNVDFHLTYYLGKLDISTDKNIEFHILSNDKGFDGICQFIQHQREPRICFRKAINQTEEKIALPLLPNQATKVNNAEQEKISQVVQEFKAFISKVQKRSLPVKLATLKNSIYNQTSLKGVDKKEADKLLPKIIDQLVQKKLIKVNENKVSYP
>NZ_CP040243.1|WP_005710975.1|57338_57605_+|hypothetical-protein
MTKPILYFAHWCPDTAPFVAELQRLGVDYEAVDITQSGANFKPFLKLRDRHPAFDNAKANGYIGIPALVLEDERVVLELGELERFCNQ
>NZ_CP040243.1|WP_016528610.1|56379_57285_+|glycine--tRNA-ligase-subunit-alpha
MTAKFNVKTFQGMILALQDYWANQGCTVVQPFDMEVGAGTSHPMTCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDSLKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYANTDFLFYCFDQYEKEVQELLALEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKGVAEAYYASREALGFPGCK
>NZ_CP040243.1|WP_149350518.1|54625_55957_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MSSAPNIGFVSLGCPKNLVDSERILTELRSDGYNIISSYEGADLVIVNTCGFIDSAEQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHSYEAVMKHVHKYVPKPEYNPYVSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRPIVQVLDEAKRLVDSGVKELLIVSQDTSAYALDKKKEEGTKTVFWNGMPIKNNLITLCEQLGSMGVWIRLHYVYPYPHVDDLIPLMAQGKLLPYLDIPLQHASPKILKAMKRPGSIDRTLERIKKWREICPDLTLRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKFSPVDGAVATEMEDQVPEEVKEERFHRFMQLQQQISADRLQQKIGRTLSVIVDEIDKEGIIGRSMADAPEIDGVVYVDNLSGAEVKVGQIISVTITQADEYDLWGTC
>NZ_CP040243.1|WP_149350524.1|71237_72026_-|heme-ABC-transporter-ATP-binding-protein
MLQSDRLLIADKLTLTLNQRLLLDNISLVLPQGKMTVLIGPNGAGKSTLLRLLSGYLSAKSGEVRLYNKGIDQFSLSELAQHRAVMRQHSLLNFPFSVEEVIRMGGYHRSQTEVDQHLEEVITVTECTALRDKAYRQLSGGEQQRTQLARALLQLWSEDMRGKLLFLDEPTSAFDLYHQQHCLRLLKNLCQKKGLTVCCILHDLNLAALYGDQLILLAEQHIQACGSATEVIRKEIIQKWYKAEVAVFPHFATQAPQIQLSL
>NZ_CP040243.1|WP_149350525.1|72025_73012_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSRSLWLISLFIVLLLVALIATNVGAFSLTWQDLIAADLNSNVWQIWLNIRLPRILLAIIVGLALAVSGTVFQGLFHNPMADPALIGVNSGASLAVAFSILLPNILPTAWGIYSTMLFAFMGSLAVTGFIYALSHRTQASMQKLLLAGIAVNALCFAIVGMLTYISNDQQLRQFTLWTMGSLGQAQWQPLFIASTLILPACLYLFTLAQKLNVLQLGDEEAHYLGINVLQLKRLLMLLGALLVGSAVAVSGAIGFIGLVIPHLVRFKLGADHRWVLPASALCGAILLLIADTFARTAFAPAELPVGMITSFLGAPYFLWLVIRYREVN
>NZ_CP040243.1|WP_005712673.1|73011_73848_-|ABC-transporter-substrate-binding-protein
MPFIRFFCFLTACFAISITAQATNERVISIGGDVTEIIYALNAEQNLIGRDSTSLNPPQVKALPDIGYMRQLNTEGILALKPTKVIASEVAQPSVVLEQLKSAGIQVELVPLKYSPESVVEKIKRIGDIVGKPQQAAALADKFTQEINAVNKSPLDVNILFILNRAGIHQMAAGKGTVADTAIRLIGAKNAMKDAVRFAPISQEGMISANPDLIVLSHLSLENFKSPDEIWTLPGLAHTNAGKHKRLVVVDDIAFLAFGLTMGQELQKMRTAAEQVVK
>NZ_CP040243.1|WP_149350526.1|73900_75028_-|DNA-protecting-protein-DprA
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQHWFNPEHKWIDQALQWAEQDQQRILTLFDEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAVNENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITARYALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENVEDILDAIAWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPELTACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT
>NZ_CP040243.1|WP_005712670.1|75364_75877_+|peptide-deformylase
MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVITIDIEGDKTNQIVLINPEILESSGETGIEEGCLSIPGCRALVPRKEKLTVKALNREGQTFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQIERAK
>NZ_CP040243.1|WP_149350527.1|75888_76815_+|ADP-glyceromanno-heptose-6-epimerase
MIIVTGGAGFIGSNIVKALNAIGRTDILVVDNLKNGEKFVNLVDLDIADYCDKEDFIASIIAGDDFGEIDAIFHEGACSATTEWDGKYLMQNNYEYSKELLHFCLDRQIPFFYASSAATYGGRSDNFIEDRKFEQPLNVYGYSKFLFDEYVRKILPEAESPVCGFKYFNVYGPREQHKGSMASVAFHLNTQILKGENPKLFEGSETFLRDFVYVEDVAQVNIWAWQNRISGIFNLGTGNAESFRAVADAVLAFHQKGQIETIPFPDHLKSRYQTFTQADLTKLRAAGYDKPFKTVAEGTKAYMEWLNR
>NZ_CP040243.1|WP_149350528.1|77009_77315_+|hypothetical-protein
MPALKQHLSVVFGDEDLDNQARDQNQLQRNYRSLLSRHKKYDSKQIRNDNASLALRWSKGVKALGIDTDVDLGIRSGTDIFLRFKVAKTWQHNEVFSTRLE
>NZ_CP040243.1|WP_149350529.1|77462_77723_+|hypothetical-protein
MYRQHDFAGYKKLSYGLFVGGNINKKKADLTHYGPFINWRQPIWKDWVFIQPEVHFYNDKKQNRKHHFGAFYDWKRFSNIFFRQTK
>NZ_CP040243.1|WP_149350530.1|78152_78374_-|hypothetical-protein
MPRMMAVDVEFADASFLQPLKITRRVILSKWIILKLNHFLNFEEMTPKHSYITIVKSELSSPEPPILKTTLYK
>NZ_CP040243.1|WP_075630738.1|78488_78869_-|helix-turn-helix-transcriptional-regulator
MNLQFINDQNNNPLFVVLPITEYNRLKECEAQLTDNEEEWESLPYEQSDNDDVLIPHEVVTAMIKHNLNHLGAWRIYRNLSQQEVAELTGLSQSAISQMERSDSRPQKKTLERFSKIYDCDVKQMY

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Crispr_ID: NZ_CP040243_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040243_4

1110896-1111116

Orphan

Consensus_repeat	Method
CTTCATTTCTTCTGTTGGATTTT	CRISPRCasFinder

3 spacers

WYL

The CRISPR arrays of NZ_CP040243_4

>merge|NZ_CP040243|4|1110896-1111116|CRISPRCasFinder
TTTCATTTCTTCTGTTGGATTTTTTATATATCGAATAGCATAACCATTTTCTTTAATCGCAAGCAACTTCATTTCTTCTGTTGGATTTTCAATATATTGAATAGCACAACCATCCACTTTTACTGCAGCTAGCTTCGTTTCTTCTGTTGGATTTTTGAAAATATTAAAAGGCCAACCACGTTGTATAAGCTCTACTGGTGTCATATCTTCTATACGCTTTT

>NZ_CP040243|4|4|1110896-1111116|CRISPRCasFinder
TTTCATTTCTTCTGTTGGATTTT	TTATATATCGAATAGCATAACCATTTTCTTTAATCGCAAGCAA
CTTCATTTCTTCTGTTGGATTTT	CAATATATTGAATAGCACAACCATCCACTTTTACTGCAGCTAG
CTTCGTTTCTTCTGTTGGATTTT	TGAAAATATTAAAAGGCCAACCACGTTGTATAAGCTCTACTGG
TGTCATATCTTCTATACGCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040243.1\|WP_005713476.1\|1109921_1110635_-\|DUF3944-domain-containing-protein	unknown	unknown	gnl\|CDD\|227078
NZ_CP040243.1\|WP_010786825.1\|1120866_1121706_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP040243.1\|WP_012621660.1\|1102895_1104467_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP040243.1\|WP_005713471.1\|1111196_1111535_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_021112193.1\|1116826_1117393_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP040243.1\|WP_005713445.1\|1121818_1122301_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP040243.1\|WP_005713479.1\|1109508_1109895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_005713461.1\|1113033_1113837_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|236970
NZ_CP040243.1\|WP_016528005.1\|1115637_1116588_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP040243.1\|WP_149350872.1\|1113953_1115330_-\|Na+/H+-antiporter-family-protein	unknown	unknown	gnl\|CDD\|224967
NZ_CP040243.1\|WP_149350873.1\|1117393_1117831_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP040243.1\|WP_149350870.1\|1105361_1105544_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225865
NZ_CP040243.1\|WP_021109464.1\|1106588_1108370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_021113519.1\|1104601_1105072_+\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|379139
NZ_CP040243.1\|WP_005713493.1\|1105667_1105886_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_005713468.1\|1111543_1112431_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP040243.1\|WP_005713464.1\|1112648_1112993_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040243.1\|WP_005713491.1\|1105938_1106310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040243.1\|WP_005713488.1\|1106334_1106592_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP040243.1\|WP_149350871.1\|1108416_1109493_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|237537

Protein	Function_ID	Function_description	E-value
NZ_CP040243.1\|WP_005713476.1\|1109921_1110635_-\|DUF3944-domain-containing-protein	gnl\|CDD\|227078	COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown].	1.50452e-33
NZ_CP040243.1\|WP_010786825.1\|1120866_1121706_+\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	0
NZ_CP040243.1\|WP_012621660.1\|1102895_1104467_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP040243.1\|WP_021112193.1\|1116826_1117393_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	5.28323e-103
NZ_CP040243.1\|WP_005713445.1\|1121818_1122301_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	3.66011e-107
NZ_CP040243.1\|WP_005713461.1\|1113033_1113837_-\|exodeoxyribonuclease-III	gnl\|CDD\|236970	PRK11756, PRK11756, exonuclease III; Provisional.	0
NZ_CP040243.1\|WP_149350872.1\|1113953_1115330_-\|Na+/H+-antiporter-family-protein	gnl\|CDD\|224967	COG2056, COG2056, Predicted permease [General function prediction only].	0
NZ_CP040243.1\|WP_149350873.1\|1117393_1117831_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.55267e-42
NZ_CP040243.1\|WP_149350871.1\|1108416_1109493_-\|chemotaxis-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	2.27039e-05
NZ_CP040243.1\|WP_149350870.1\|1105361_1105544_-\|hypothetical-protein	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000190249
NZ_CP040243.1\|WP_021113519.1\|1104601_1105072_+\|DUF4102-domain-containing-protein	gnl\|CDD\|379139	pfam13356, Arm-DNA-bind_3, Arm DNA-binding domain. This DNA-binding domain is found at the N-terminus of a wide variety of phage integrase proteins.	3.5472e-21
NZ_CP040243.1\|WP_016528005.1\|1115637_1116588_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP040243.1\|WP_005713464.1\|1112648_1112993_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.90957e-12
NZ_CP040243.1\|WP_005713488.1\|1106334_1106592_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	2.50978e-07
NZ_CP040243.1\|WP_005713468.1\|1111543_1112431_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.39294e-25

>NZ_CP040243.1|WP_005713476.1|1109921_1110635_-|DUF3944-domain-containing-protein
MAYVYDVDLEFLAQCTNEDLQPLVDILTKDKDGKKRYTEGLTSSRVYKVFYPDHNLYWKEIAEEIQKFGANTIATLFRLGKGVSYKTILIEVCEKMKVNFNKESSTELIEKHLLDKVLTSAIEELSEDDLKKLAEELKIPATHLGKQSLTALVLVELNSLLSTPVLWKTIHTMFPQTIGTLLAGTALGRILGFATGPIGWGITGIWALKDISGPATRVTVPAVIQIAFLRKKYSINN
>NZ_CP040243.1|WP_005713479.1|1109508_1109895_-|hypothetical-protein
MFVQNLTAEQQSALIYLAHEIARADGSSDELQLGMVEILTKQSEDGVTEKAITVDELVTLFTTERAKCSLLLELLGVAHANEEYHLSEKDMIAGYARKLGISNEKLNALESWVEKQFALSREVTLLLD
>NZ_CP040243.1|WP_149350871.1|1108416_1109493_-|chemotaxis-protein
MPLPFILAGAAAVTIGTGIKKGIDGFKDNSAAKDITEAAESLYDTEKKLFDEQDAATNASLESLGQLQLSIGSDFAEFKRISELLLEKLAQHKEAKDLQINIPKNELDKIEGIAFSAVAYLGQLAGGAAIGAGAAYAVYGGVMALAAASTGTPIAALSGAAAYKATMAAIGGGAISAGGFGMAGGAAILGVGVVAPIVLVAGLAFAKHSEKKLESARDYRTQVKNAVSSMKLGRHHLKETEEYSNKIYKELNRVYQIFGQYFQDLKNMDTLVRNGVDINTISSAIIKIVDNGYKVAAILTDIITTPLFKPKKDDNGELVKNKEDTVEFETDKDGMKVINKEDIDAHITLSTYKSKDFE
>NZ_CP040243.1|WP_021109464.1|1106588_1108370_-|hypothetical-protein
MSNVLMTKPEFDWTGELEKTVVNSLVTTFGLDFLLFEDKRGGDVDTVLKAREYQKEIKQKGSSTIHVSNELASQLDSNGRNIDPYKKVKYDQQGNVQKDGKGKVKKEDDYHGKSTLYTKRKAKDKEQEDLGTMVDGYTGEKINADDIKKERNGKEFEYVTELDHVVAASEIHDDLGRILSGLDGVELANSEDNLVSTHWIINNEKNDHNFKTFLEKGGVRDQRVEKMAQEITQKKSELNNSNLSQEERAKKEKELRILERKKEILENLDEEQCRKIEKDARDKYNNKINYKYYTSSKFFKSTALAAGKAGLKMGTRQALGLVLAEIWFELRERIPEIYQNLKQNFTITKFLEKIAKTLSNIFERVKERFKDLLTAFKDGAIAGFFSNISTTVMNIFLVSEKMVVKLIREMWNSIVSVIKLITFNPDNLNAKELFKGVLKILSAGLSALLGTMLNSHLNTILIFPMGDLIAAFVSALATGLMTCAFAYFIENGLSFKKLWEIINSYKNKYELMTEHMKEINAELDRYLLEWAKIEFNLNPNEIAVFVDSLEACNSELERSIVLEKEIHRRNIELPYESGNEQSTRNWLASLAVK
>NZ_CP040243.1|WP_005713488.1|1106334_1106592_-|YkgJ-family-cysteine-cluster-protein
MSSLASFPCNSCGKCCRRVNLSEQTAYLDRGDGVCHHFDEQTNLCKIYENRPLVCRVEDYYKAHLSHLYSWEEFVKLNLEICNKL
>NZ_CP040243.1|WP_005713491.1|1105938_1106310_-|hypothetical-protein
MNFFDILGRVAKAISRSVGNSMENHIIELWNKLKHLDNDRFISFINSKDTLNTQVYISVLSIYSKSINSYYDFIYTIGKTKYNKDEIIRGTLRICKSNIIQLSNKREMNEIRQIANKFATEFS
>NZ_CP040243.1|WP_005713493.1|1105667_1105886_-|hypothetical-protein
MNFEEQLVKEVVARMTEEEKWETFKALQKFDFDEMDRMFEEYDKKLRNIEQTLRKSEQLLEKMKAEHNSRKV
>NZ_CP040243.1|WP_149350870.1|1105361_1105544_-|hypothetical-protein
MNEKQLHALVAEFAKNLKTPKDLNQFSRMLKKITVEAALNGELTDHLGYLKRRFSFALCI
>NZ_CP040243.1|WP_021113519.1|1104601_1105072_+|DUF4102-domain-containing-protein
MLTDSKIKSLKAKDKAYKVADRDGLYVVVSPAGTVTFRYDYRINGRRETLTIGKYGKDGISLVEAREKLMMARKMVSDGISPATEKRKKKNQIKSANNFEAFALKYIAETDFAESTRALRLATYEREIKKYFGHKLMTEISTEEIRGHCQIIGDNL
>NZ_CP040243.1|WP_012621660.1|1102895_1104467_+|glutamine-hydrolyzing-GMP-synthase
MTNIHNHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQIREFNPTGIILSGGPESTTEENSPRAPEYVFNAGVPVLGICYGMQTMAMQLGGLTETSDHREFGYASVELKATDSLFAKLNDDLTACNPKLDVWMSHGDKVTRLPSNFQITGVTPTCPIAAMSDESRRFYGVQFHPEVTHTKSGLALLTNFVVNICGCETKWTAENIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFGDKFGLNIIRVNAEDRFLDALKGIDEPEAKRKTIGKVFVDVFDDESKKLTSVKWLAQGTIYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLPAEMLNRHPFPGPGLGVRVLGEIKKEYCDLVRRADAIFMEELHASGWYYKVSQAFTVFLPVKSVGVMGDGRKYDWAVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRVVYDVSGKPPATIEWE
>NZ_CP040243.1|WP_005713471.1|1111196_1111535_-|hypothetical-protein
MKKIDISEPFSTIKALINERQSFETCGIDAGNLFAFSQELEKYIESLNLKCRLYTKNRLAVGLSAVLNPRWGILSLAAIAAHNLLTLNPDCEIYRDLANKRVGVVWKKKFSS
>NZ_CP040243.1|WP_005713468.1|1111543_1112431_-|WYL-domain-containing-protein
MQKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWEESGPRHYKINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKLTDSVKVKGFQYEDIRHLDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKTFCFTQITMLKMLDETFEPNQQLQEEIKSNDSISFGNQLSEVLVKVSSFASPYFLRRNLLPNQKLVHKSENGELILASENVNELDIVPLVQYWIPHLTIISPNGLQEKMVEKLKQYIAND
>NZ_CP040243.1|WP_005713464.1|1112648_1112993_+|helix-turn-helix-transcriptional-regulator
MLDKSEQLIQTIGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTIPTVLRLLELSEIFHCEVADLVTESSNRSTDQAKVIEKLLQQLDSQQRSELLYLIERLVKWKNES
>NZ_CP040243.1|WP_005713461.1|1113033_1113837_-|exodeoxyribonuclease-III
MKFISFNINGLRARPHQLEALIEKHQPDVIGLQEIKVADEDFPYDLVNHLGYHVFHHGQKGHYGVALLTKNQPLAVRKGFPTDNADAQKRMIMADLETPFGTLTVLNGYFPQGENRSHETKFPAKEKFYADLQRYLETELKPENPIVIMGDMNISPTDLDIGLGEVNRKRWLRDGKCSFLPEEREWLGRLHGYGLVDTFRAMNPTAEDKFSWFDYRSKGFDDNRGLRIDLVLASTPLAERCVETGIDLEIRAMDKPSDHAPVWAVFK
>NZ_CP040243.1|WP_149350872.1|1113953_1115330_-|Na+/H+-antiporter-family-protein
MLLSNDVVISIIVLLALSLLRINVVIALIIAALTCGILGNSGNGMALGEALTTTVKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKIIKAFGKRPSGRSLFWFKYAVLFTLVAFAMASQNVIPVHIAFIPIVVPPLLSVMNQLKIDRRAVACALTFGLTATYMLIPAGFGQIFIENILVKNINQAGQPFNLVTNTAEVTQAMAIPVAGMIVGLLLAFFVTYRKPRVYVEDRPEPTADDIEARVANVKSFHIGVSIAAIVATCFVQLSTNSTVLGGLVGLIIFAVGGVFKLKQSNDIFQDGLRLMAMIGFVMIAASGYASVVNSTGGVPELVEGLKGSIDSKGMAAFLMLLVGLLITMGIGSSFSTVPIITSIYVPLCLSFGFSPLATVSIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHYNIPLLVFGWIAAMIL
>NZ_CP040243.1|WP_016528005.1|1115637_1116588_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MHQDAVQDTQKEKKIAYNFNKLQKRLRRNVGNAIADFNMIEDGDKVMVCLSGGKDSYTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHVLPEYLESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLETLFLNMFYGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPIIPCNLCGSQPNLQRQVVKEMLQTWDRQYPGRIETMFSALQNVAPSHLCDPNLFDFKGIKRGQLIDGVEGDIAFDKAEIPSAPVVQDKDDAADYAESGLIQIKAVS
>NZ_CP040243.1|WP_021112193.1|1116826_1117393_+|UbiX-family-flavin-prenyltransferase
MSNKRIIIGISGASGFQYGYKALELLKPLDNIETHLVISKGAELTRQYETNISEEQLLSLADVVHPIHNLGASISSGSFKTIGMLIAPCSMRTLASVAHGFSDNLLARAADVVLKERRKLVLMVRETPLHLTHLDNMRKVTEMGGIIFPPVPALYHQPKTVDEIVTHSVARALDIFDLEIDIPRWTGK
>NZ_CP040243.1|WP_149350873.1|1117393_1117831_+|hypothetical-protein
MKNPIPTHIVQFILKNHVVSLACHHQNQLWSASCFYAFDEKSHRLIVLSKQTTEHGKLMLANPNITGTIAGQPDNIREIEGIQFQAVARCLENEQEKQTALQIYWQKHPLAKLMSSDVWEISFTRIKHTENRVAFAKKSDWKKLF
>NZ_CP040243.1|WP_010786825.1|1120866_1121706_+|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MNYNNECLSMLKLGKKTEYKSTYDPSLLQAVPRYLNRESLGIVKQQPFTVGADIWTLYELSWLNQNGVPQVAIADVIIDSSSSNIIESKSFKLYLNSFNQMRFPSREDVQRRIQSDLSKCAQGDVTVQIYKLSDFAMRSISEFNGECIDNQNICINRYDFTRESLQGIANGEIVEERLVSHLLKSNCLITSQPDWGSIQICYVGKQLDREKLLRYLVSFREHNEFHEQCVERIFCDLMEFAQPQKLTVYARYTRRGGLDINPFRSNFEGIPENLRMVRQ
>NZ_CP040243.1|WP_005713445.1|1121818_1122301_+|leucine-responsive-transcriptional-regulator-Lrp
MENKKLTKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCLERVKRLEKQNVIMGYRALLNPELLEAPLLVIVEITLVRGKPDVFEEFNRAVQQLDEIQECHLVSGDFDYLLKTRVADMAAYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040243_2	2.1\|67950\|39\|NZ_CP040243\|CRISPRCasFinder	67950-67988	39	NZ_CP040243.1	1317712-1317750	0	1.0
NZ_CP040243_2	2.2\|68013\|48\|NZ_CP040243\|CRISPRCasFinder	68013-68060	48	NZ_CP040243.1	2145582-2145629	2	0.958
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP040243.1	1161475-1161504	2	0.933

1. spacer 2.1|67950|39|NZ_CP040243|CRISPRCasFinder matches to position: 1317712-1317750, mismatch: 0, identity: 1.0

tgtatctcctttaggacccgcttgtcctggatcgccttt	CRISPR spacer
tgtatctcctttaggacccgcttgtcctggatcgccttt	Protospacer
***************************************

2. spacer 2.2|68013|48|NZ_CP040243|CRISPRCasFinder matches to position: 2145582-2145629, mismatch: 2, identity: 0.958

cgcaggaccttgagggcccactggtcctgcctctccttttggtcctgc	CRISPR spacer
cgcaggaccttgagggcccactgctcctgcctctccttttggacctgc	Protospacer
*********************** ****************** *****

3. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to position: 1161475-1161504, mismatch: 2, identity: 0.933

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcacccgcagggccagtttctcctcg	Protospacer
***************.****.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	957206-957235	6	0.8
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1628855-1628884	6	0.8
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP012478	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence	132365-132394	7	0.767
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1505398-1505427	7	0.767
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1794093-1794122	7	0.767
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	835264-835293	8	0.733
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1482274-1482303	8	0.733
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1399667-1399696	8	0.733
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	AP018479	Mycobacterium phage GS4E DNA, complete sequence	41074-41103	8	0.733
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	MT310877	Mycobacterium phage VA6, complete genome	40941-40970	8	0.733
NZ_CP040243_3	3.2\|68499\|30\|NZ_CP040243\|CRISPRCasFinder	68499-68528	30	MT310886	Mycobacterium phage AN3, complete genome	39763-39792	8	0.733

1. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcagccgcaggcccagcttgccattg	Protospacer
******* ******* ******* .* *.*

2. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.8

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agatcggcccgcagcaccagcttctcgtcg	Protospacer
** *  .******* *********** ***

3. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_CP012478 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcacccgctggaccagctggccgcag	Protospacer
************ *********  .* . *

4. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.767

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcacccgcaggtccagcgccgtcccc	Protospacer
*************** ***** .* .*.*

5. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcacccgcaggtccagcgccgtcccc	Protospacer
*************** ***** .* .*.*

6. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
agctgcacccgcaggtccagcgccgttccc	Protospacer
*************** ***** .* ...*

7. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
acgccagcctgcagggccagcttctcctcg	Protospacer
*  .  .**.*****.**************

8. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
acgccagcctgcagggccagcttctcctcg	Protospacer
*  .  .**.*****.**************

9. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to AP018479 (Mycobacterium phage GS4E DNA, complete sequence) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
ttgtcagccagcaggaccagcatctcctcg	Protospacer
   *  .** *********** ********

10. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to MT310877 (Mycobacterium phage VA6, complete genome) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
ttgtcagccagcaggaccagcatctcctcg	Protospacer
   *  .** *********** ********

11. spacer 3.2|68499|30|NZ_CP040243|CRISPRCasFinder matches to MT310886 (Mycobacterium phage AN3, complete genome) position: , mismatch: 8, identity: 0.733

agctgcacccgcaggaccagcttctcctcg	CRISPR spacer
ttgtcagccagcaggaccagcatctcctcg	Protospacer
   *  .** *********** ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60349 : 171669

113

Haemophilus_phage(26.92%)

tail,terminase,tRNA,plate,integrase,head,transposase

attL 95800:95816|attR 177034:177050

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149350520.1\|60349_62467_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_149350521.1\|62538_62832_+	DUF5377 family protein	NA	NA	NA	NA
WP_149350522.1\|62832_63741_+	tyrosine recombinase XerC	G1JX48	Mycobacterium_phage	6.8e-14	31.5
WP_005711000.1\|63798_64746_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.1e-41	37.9
WP_149350523.1\|65483_70319_-	hypothetical protein	NA	NA	NA	NA
WP_149350524.1\|71237_72026_-	heme ABC transporter ATP-binding protein	W5SAS9	Pithovirus	6.5e-13	29.0
WP_149350525.1\|72025_73012_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_005712673.1\|73011_73848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149350526.1\|73900_75028_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_005712670.1\|75364_75877_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.8e-17	39.5
WP_149350527.1\|75888_76815_+	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.6e-34	37.6
WP_149350528.1\|77009_77315_+	hypothetical protein	NA	NA	NA	NA
WP_149350529.1\|77462_77723_+	hypothetical protein	NA	NA	NA	NA
WP_149350530.1\|78152_78374_-	hypothetical protein	NA	NA	NA	NA
WP_075630738.1\|78488_78869_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149350531.1\|78907_79183_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_149350532.1\|79815_81990_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.6e-133	44.0
WP_149350533.1\|81986_82322_-	hypothetical protein	NA	NA	NA	NA
WP_149351277.1\|82314_82911_-	ash family protein	NA	NA	NA	NA
WP_016527745.1\|83159_83573_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	3.9e-33	61.8
WP_149350534.1\|83560_84034_-	hypothetical protein	NA	NA	NA	NA
WP_149350535.1\|84023_84326_-	hypothetical protein	NA	NA	NA	NA
WP_149350536.1\|84322_84664_-	hypothetical protein	NA	NA	NA	NA
WP_149351278.1\|84680_84833_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149350537.1\|85059_85779_-	hypothetical protein	NA	NA	NA	NA
WP_035500082.1\|86034_87294_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	7.1e-62	34.5
WP_149350538.1\|87745_89128_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_149350539.1\|89124_90975_+	selenocysteine-specific translation elongation factor	NA	NA	NA	NA
WP_149350540.1\|91393_91654_+	hypothetical protein	F6MIM3	Haemophilus_phage	1.9e-41	98.8
WP_149350541.1\|91694_92528_-	hypothetical protein	F6MIM2	Haemophilus_phage	3.1e-122	72.9
WP_149350542.1\|92549_93029_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	2.5e-84	92.9
WP_149350543.1\|93021_93588_-	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	5.2e-97	91.0
WP_149350544.1\|93597_95244_-\|tail	phage tail protein	F6MIL8	Haemophilus_phage	0.0e+00	97.6
WP_035493491.1\|95256_95835_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	3.9e-108	97.9
95800:95816	attL	NA	NA	NA	NA
WP_010787222.1\|96534_96903_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	6.8e-21	43.0
WP_149350545.1\|96904_97303_-	DUF1018 domain-containing protein	A0A219VHC6	Ochrobactrum_phage	1.1e-05	30.2
WP_012621958.1\|97623_97836_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_012621959.1\|97832_98357_-	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	2.6e-42	51.7
WP_012621960.1\|98349_98568_-	hypothetical protein	NA	NA	NA	NA
WP_149350546.1\|99758_101561_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9SGQ3	Pseudomonas_phage	1.3e-117	40.2
WP_149350547.1\|102480_102783_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	1.0e-14	51.5
WP_149350548.1\|102974_103292_+	hypothetical protein	NA	NA	NA	NA
WP_075605781.1\|103516_103750_-	DNA-binding protein	NA	NA	NA	NA
WP_012621968.1\|103813_104113_+	hypothetical protein	NA	NA	NA	NA
WP_149350549.1\|104308_104668_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075592658.1\|104715_105687_+	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	4.1e-49	36.0
WP_075592659.1\|105686_106865_+	hypothetical protein	NA	NA	NA	NA
WP_075605777.1\|106958_107480_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.1e-69	75.8
WP_012621973.1\|107580_107814_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	2.1e-23	74.7
WP_075592661.1\|107810_108164_+	DUF2681 domain-containing protein	F6MIK1	Haemophilus_phage	2.6e-30	66.7
WP_012621975.1\|108188_108518_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	6.1e-05	28.0
WP_012621976.1\|108521_108812_+	hypothetical protein	A0A0C4UR00	Shigella_phage	8.8e-24	59.8
WP_016528495.1\|108845_109418_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	5.4e-33	43.0
WP_149350550.1\|109404_110715_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	1.1e-158	66.0
WP_149350551.1\|110718_112137_+	DUF935 family protein	A4JWJ5	Burkholderia_virus	8.7e-125	49.5
WP_149350552.1\|112133_113402_+\|head	phage head morphogenesis protein	J9STS2	Pseudomonas_phage	1.7e-58	48.0
WP_021110032.1\|113528_113984_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	3.9e-18	32.4
WP_075592668.1\|115324_116257_+	inorganic pyrophosphatase	A4JWK0	Burkholderia_virus	2.1e-79	50.5
WP_081378223.1\|116315_116603_+	hypothetical protein	NA	NA	NA	NA
WP_075592670.1\|116602_117040_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_149350553.1\|117039_117540_+	hypothetical protein	NA	NA	NA	NA
WP_149350554.1\|117546_118944_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	8.4e-112	48.0
WP_149350555.1\|118943_119462_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	2.3e-35	42.5
WP_075630596.1\|119780_120371_+	hypothetical protein	G9L6G1	Escherichia_phage	1.1e-25	53.9
WP_012621990.1\|120375_120636_+	hypothetical protein	NA	NA	NA	NA
WP_012621991.1\|120715_121003_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_106380187.1\|121004_121133_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012621993.1\|121117_121402_-	hypothetical protein	NA	NA	NA	NA
WP_149350556.1\|121445_124124_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.5e-26	22.7
WP_075620911.1\|124123_125065_+\|tail	phage tail protein	NA	NA	NA	NA
WP_021110043.1\|125057_125276_+	phage Tail protein X family protein	Q6QIA3	Burkholderia_phage	7.6e-12	46.3
WP_149350557.1\|125279_126332_+	hypothetical protein	Q6QIA2	Burkholderia_phage	1.8e-58	38.6
WP_012621998.1\|126346_126931_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_012621999.1\|126988_127357_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_026917001.1\|127343_128459_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	4.1e-53	35.1
WP_149350558.1\|128451_129018_+\|tail	phage tail protein	Q6QI98	Burkholderia_phage	5.9e-40	44.0
WP_149350559.1\|131054_131621_+	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	1.4e-97	92.0
WP_149350560.1\|131613_132093_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	8.7e-85	93.5
WP_149350561.1\|132297_133080_+	hypothetical protein	F6MIM2	Haemophilus_phage	4.7e-104	66.7
WP_149350562.1\|133610_133799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010787178.1\|133915_134704_+	sel1 repeat family protein	NA	NA	NA	NA
WP_149350563.1\|135229_136438_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	6.7e-49	47.6
WP_149350564.1\|136458_137847_+	AAA family ATPase	H7BUJ6	unidentified_phage	1.6e-86	42.5
WP_010787180.1\|137925_138510_+	hypothetical protein	NA	NA	NA	NA
WP_010787181.1\|138600_139020_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_010787182.1\|139028_139289_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_005711861.1\|139467_140418_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	5.0e-07	30.8
WP_149350565.1\|140417_141716_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_015939972.1\|141731_143108_+	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_010787186.1\|144006_145116_+	alanine dehydrogenase	NA	NA	NA	NA
WP_021110267.1\|145273_146635_+	sodium-dependent transporter	NA	NA	NA	NA
WP_015939975.1\|146910_148047_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_015939976.1\|148239_149691_-	type II restriction endonuclease HgAI	NA	NA	NA	NA
WP_015939977.1\|149680_150757_-	DNA cytosine methyltransferase	NA	NA	NA	NA
WP_015939978.1\|150746_151820_-	DNA cytosine methyltransferase	G9BWB3	Planktothrix_phage	2.2e-11	25.5
WP_041603185.1\|152066_152399_-	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	7.2e-06	34.0
WP_015939981.1\|153524_153968_+	hypothetical protein	NA	NA	NA	NA
WP_015939982.1\|153951_154497_-	hypothetical protein	NA	NA	NA	NA
WP_010787188.1\|154666_156151_-	trk-type K+ transport system, membrane component	NA	NA	NA	NA
WP_044009219.1\|156627_157473_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_010787191.1\|157980_159546_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.0e-09	23.9
WP_021109462.1\|161947_162130_+\|transposase	transposase	F6MIM4	Haemophilus_phage	6.5e-25	95.0
WP_081378233.1\|162689_163523_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_005714486.1\|163858_164212_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005596065.1\|164302_164500_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_075592755.1\|164599_165139_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.8e-15	34.5
WP_015939987.1\|165356_166391_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.4e-111	58.8
WP_005714492.1\|166679_167495_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_005715236.1\|167628_167979_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_005714715.1\|168012_169191_-	MFS transporter	NA	NA	NA	NA
WP_035492373.1\|169183_170224_-	ThiF family adenylyltransferase	A0A1V0SAV8	Catovirus	5.8e-09	32.1
WP_005715236.1\|170537_170888_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_149350566.1\|170901_171669_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
177034:177050	attR	NA	NA	NA	NA

DBSCAN-SWA_2

339956 : 457407

111

Haemophilus_phage(57.14%)

tail,terminase,tRNA,plate,integrase,protease,head,transposase

attL 375691:375705|attR 456270:456284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149350623.1\|339956_340418_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_149350624.1\|340498_341440_+	hypothetical protein	NA	NA	NA	NA
WP_005713398.1\|341505_343185_-	DNA repair protein RecN	NA	NA	NA	NA
WP_149350625.1\|343427_345698_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_149350626.1\|345911_347759_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.0e-60	33.0
WP_005713402.1\|348014_348278_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_149350627.1\|348518_350090_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_015939738.1\|350153_351104_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	4.9e-71	51.9
WP_149350628.1\|351286_352033_+	ribonuclease	NA	NA	NA	NA
WP_149350629.1\|352020_352527_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_010787153.1\|352648_353257_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_035493665.1\|353450_354017_-	transcriptional regulator	NA	NA	NA	NA
WP_035519246.1\|354031_355081_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_005713415.1\|355268_356978_-	ribonucleoside-diphosphate reductase subunit alpha	Q2XUY0	environmental_halophage	4.0e-201	60.5
WP_005713418.1\|356964_357942_-	ribonucleotide-diphosphate reductase subunit beta	A0A1X9I9V4	Staphylococcus_phage	1.3e-98	54.6
WP_149350630.1\|358259_361871_-	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_005713424.1\|361986_363492_-	sodium/proline symporter PutP	NA	NA	NA	NA
WP_149350631.1\|369761_372959_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_021115116.1\|373237_374074_+	hypothetical protein	NA	NA	NA	NA
WP_149350632.1\|374085_376107_-	DNA helicase Rep	A7KV33	Bacillus_phage	8.4e-113	38.9
375691:375705	attL	NA	NA	NA	NA
WP_005712641.1\|376257_377208_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
375691:375705	attL	NA	NA	NA	NA
WP_149350633.1\|377223_377973_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_005712645.1\|377997_378345_+	YggL family protein	NA	NA	NA	NA
WP_005712648.1\|378387_379473_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_149350634.1\|379758_384042_-	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	5.4e-69	27.0
WP_149350635.1\|384227_388256_-	DNA-directed RNA polymerase subunit beta	A0A2P0VP65	Tetraselmis_virus	3.2e-23	29.7
WP_131262424.1\|388692_388893_-	hypothetical protein	NA	NA	NA	NA
WP_149350636.1\|389079_389340_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010787222.1\|389755_390124_-	transcriptional regulator	Q6QIE8	Burkholderia_phage	6.8e-21	43.0
WP_149350545.1\|390125_390524_-	DUF1018 domain-containing protein	A0A219VHC6	Ochrobactrum_phage	1.1e-05	30.2
WP_012621958.1\|390844_391057_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_012621959.1\|391053_391578_-	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	2.6e-42	51.7
WP_012621960.1\|391570_391789_-	hypothetical protein	NA	NA	NA	NA
WP_149350637.1\|391781_392954_-	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-109	55.3
WP_149350546.1\|392978_394781_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	J9SGQ3	Pseudomonas_phage	1.3e-117	40.2
WP_149350638.1\|394791_395643_-	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	5.2e-56	42.2
WP_149350547.1\|395699_396002_-	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	1.0e-14	51.5
WP_149350548.1\|396193_396511_+	hypothetical protein	NA	NA	NA	NA
396278:396292	attR	NA	NA	NA	NA
WP_075605781.1\|396734_396968_-	DNA-binding protein	NA	NA	NA	NA
396278:396292	attR	NA	NA	NA	NA
WP_012621968.1\|397031_397331_+	hypothetical protein	NA	NA	NA	NA
WP_149350549.1\|397529_397889_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075605777.1\|400188_400710_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	1.1e-69	75.8
WP_012621975.1\|401421_401751_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	6.1e-05	28.0
WP_012621976.1\|401754_402045_+	hypothetical protein	A0A0C4UR00	Shigella_phage	8.8e-24	59.8
WP_016528495.1\|402078_402651_+	DUF3486 family protein	A0A2I7S9D1	Vibrio_phage	5.4e-33	43.0
WP_149350550.1\|402637_403948_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	1.1e-158	66.0
WP_021110032.1\|406763_407219_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	3.9e-18	32.4
WP_149350639.1\|407439_408549_+	peptidase	A4JWJ9	Burkholderia_virus	6.9e-69	41.0
WP_075592668.1\|408558_409491_+	inorganic pyrophosphatase	A4JWK0	Burkholderia_virus	2.1e-79	50.5
WP_081378223.1\|409549_409837_+	hypothetical protein	NA	NA	NA	NA
WP_075630598.1\|409836_410274_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_012621986.1\|410273_410774_+	hypothetical protein	NA	NA	NA	NA
WP_012621987.1\|410783_412178_+\|tail	phage tail protein	A4JWK5	Burkholderia_virus	1.9e-111	47.8
WP_016528506.1\|412177_412696_+\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	6.8e-35	42.5
WP_075592763.1\|412782_413064_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_016528508.1\|413081_413213_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_075592764.1\|413224_413473_-	hypothetical protein	NA	NA	NA	NA
WP_075592765.1\|413477_413747_-	hypothetical protein	NA	NA	NA	NA
WP_149350640.1\|413783_416384_+\|tail	phage tail tape measure protein	K4ICR4	Acidithiobacillus_phage	1.9e-72	38.8
WP_149350641.1\|416383_417325_+\|tail	phage tail protein	NA	NA	NA	NA
WP_021110043.1\|417317_417536_+	phage Tail protein X family protein	Q6QIA3	Burkholderia_phage	7.6e-12	46.3
WP_012621997.1\|417539_418592_+	hypothetical protein	Q6QIA2	Burkholderia_phage	1.8e-58	38.6
WP_012621998.1\|418606_419191_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_149350642.1\|419248_419617_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_026917001.1\|419603_420719_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	4.1e-53	35.1
WP_149350558.1\|420711_421278_+\|tail	phage tail protein	Q6QI98	Burkholderia_phage	5.9e-40	44.0
WP_149350643.1\|421301_423218_+\|tail	phage tail protein	F6MIL8	Haemophilus_phage	4.6e-278	97.7
WP_149350543.1\|423227_423794_+	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	5.2e-97	91.0
WP_149350644.1\|423786_424266_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	8.7e-85	93.5
WP_149350645.1\|424287_425121_+	hypothetical protein	F6MIM2	Haemophilus_phage	4.2e-119	71.5
WP_021110304.1\|426181_426532_-	phage GP46 family protein	F6MIL5	Haemophilus_phage	3.5e-59	98.3
WP_026916656.1\|426634_427285_-\|plate	phage baseplate assembly protein V	F6MIL4	Haemophilus_phage	1.7e-99	99.5
WP_149350646.1\|427281_428406_-\|tail	phage tail protein	F6MIL3	Haemophilus_phage	7.5e-204	99.5
WP_149350647.1\|428410_429766_-	hypothetical protein	F6MIL2	Haemophilus_phage	7.0e-257	99.6
WP_149350648.1\|429766_432130_-\|tail	phage tail tape measure protein	F6MIL1	Haemophilus_phage	0.0e+00	95.9
WP_026916652.1\|432175_432370_-	hypothetical protein	F6MIL0	Haemophilus_phage	8.8e-20	97.9
WP_149350649.1\|432399_432756_-	hypothetical protein	F6MIK9	Haemophilus_phage	5.5e-60	99.2
WP_005711906.1\|432755_433130_-\|tail	phage tail protein	F6MIK8	Haemophilus_phage	7.3e-63	99.2
WP_149350650.1\|433139_434555_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	1.3e-250	97.7
WP_149350651.1\|434563_434743_-	DUF2635 domain-containing protein	B7SDP7	Haemophilus_phage	1.4e-24	93.2
WP_021110311.1\|434732_435380_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	7.1e-106	93.4
WP_149350652.1\|435376_435853_-	DUF1320 family protein	B7SDP4	Haemophilus_phage	5.1e-77	93.0
WP_149350653.1\|435855_436209_-	transcriptional regulator	B7SDP3	Haemophilus_phage	9.0e-55	96.6
WP_149350654.1\|436264_437188_-\|head	head protein	B7SDP1	Haemophilus_phage	5.2e-171	97.1
WP_149350655.1\|437187_438264_-	hypothetical protein	B7SDN9	Haemophilus_phage	1.3e-192	96.6
WP_075605790.1\|438503_438920_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	3.6e-71	97.1
WP_149350656.1\|439055_440351_-\|head	phage head morphogenesis protein	B7SDN5	Haemophilus_phage	5.2e-217	89.2
WP_149350657.1\|440337_441993_-	DUF935 family protein	B7SDN1	Haemophilus_phage	0.0e+00	98.2
WP_149350658.1\|442079_443696_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	0.0e+00	98.5
WP_005711932.1\|443798_444308_-	DUF1804 family protein	F6MIK6	Haemophilus_phage	3.6e-89	100.0
WP_005711934.1\|444308_444563_-	hypothetical protein	F6MIK5	Haemophilus_phage	3.2e-22	100.0
WP_082259376.1\|444559_444820_-	hypothetical protein	F6MIK4	Haemophilus_phage	1.8e-12	95.1
WP_149350659.1\|444982_445336_-	DUF2681 domain-containing protein	F6MIK1	Haemophilus_phage	2.0e-30	68.4
WP_149350660.1\|445332_445563_-	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	1.1e-32	97.4
WP_149350661.1\|445618_446161_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	6.8e-102	95.5
WP_149350662.1\|446239_446665_-	mor transcription activator family protein	F6MIJ8	Haemophilus_phage	1.8e-73	96.5
WP_026916638.1\|446851_447196_-	hypothetical protein	A0A0M3LQH8	Mannheimia_phage	8.8e-39	70.2
WP_149350663.1\|447290_447713_-	DUF1018 domain-containing protein	F6MIJ6	Haemophilus_phage	2.5e-72	96.4
WP_149350664.1\|447693_448257_-	hypothetical protein	F6MIJ5	Haemophilus_phage	4.7e-98	96.8
WP_149350665.1\|448397_448712_-	hypothetical protein	F6MIJ3	Haemophilus_phage	8.0e-31	65.7
WP_149350666.1\|448726_449683_-	hypothetical protein	NA	NA	NA	NA
WP_149350667.1\|449684_449885_-	hypothetical protein	NA	NA	NA	NA
WP_005711957.1\|449994_450516_-	host-nuclease inhibitor protein Gam	F6MIJ0	Haemophilus_phage	4.4e-90	98.8
WP_035494506.1\|450527_450821_-	hypothetical protein	F6MII9	Haemophilus_phage	1.2e-47	95.9
WP_005711959.1\|450822_451014_-	hypothetical protein	F6MII8	Haemophilus_phage	3.9e-28	100.0
WP_016057750.1\|451021_451903_-	AAA family ATPase	F6MII7	Haemophilus_phage	8.0e-161	100.0
WP_149350668.1\|451986_452409_-	hypothetical protein	F6MII6	Haemophilus_phage	1.4e-67	97.1
WP_149350669.1\|452418_454389_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	F6MII5	Haemophilus_phage	0.0e+00	95.3
WP_035525371.1\|454399_454666_-	HTH domain-containing protein	NA	NA	NA	NA
WP_035525374.1\|454786_455587_+	DNA-binding protein	NA	NA	NA	NA
WP_021114496.1\|456441_457407_-	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	8.6e-100	56.9

DBSCAN-SWA_3

542668 : 627977

uncultured_Caudovirales_phage(15.79%)

tail,terminase,tRNA,integrase,protease,head,transposase,portal

attL 561101:561116|attR 601402:601417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015939975.1\|542668_543805_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_021109963.1\|544358_545633_-	threonine synthase	NA	NA	NA	NA
WP_075592568.1\|547398_548028_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_149350699.1\|548076_548577_-	thiol peroxidase	NA	NA	NA	NA
WP_015940061.1\|548731_549454_+	1-acylglycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
WP_021109966.1\|549455_550865_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_005711455.1\|550985_551939_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_149350700.1\|552832_554662_-	D5 N like family protein	Q7M2A8	Enterobacteria_phage	4.4e-60	32.5
WP_005711457.1\|554645_555074_-	hypothetical protein	NA	NA	NA	NA
WP_149350701.1\|555078_555633_-	ash family protein	NA	NA	NA	NA
WP_005711461.1\|555645_555951_-	hypothetical protein	NA	NA	NA	NA
WP_149351283.1\|555961_556117_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_149350702.1\|556332_556929_-	hypothetical protein	NA	NA	NA	NA
WP_005711468.1\|557194_557671_-	hypothetical protein	NA	NA	NA	NA
WP_021118936.1\|557670_557937_-	hypothetical protein	NA	NA	NA	NA
WP_149350703.1\|559684_560050_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.8e-41	67.0
WP_149350704.1\|560086_560272_-	hypothetical protein	NA	NA	NA	NA
WP_149350705.1\|560489_560852_-	HNH endonuclease	NA	NA	NA	NA
WP_005711476.1\|560861_561173_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
561101:561116	attL	NA	NA	NA	NA
WP_035491032.1\|561165_561537_-\|head	phage head closure protein	A0A2I7SC03	Paenibacillus_phage	8.1e-06	29.1
WP_035493451.1\|561520_562738_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	6.3e-140	60.6
WP_096334851.1\|562738_563308_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.5e-54	59.5
WP_149350706.1\|564067_564499_-\|tail	phage tail protein	NA	NA	NA	NA
WP_149350707.1\|564858_566079_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	3.8e-76	39.1
WP_021109975.1\|566882_567665_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005711498.1\|567654_568371_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005711500.1\|568373_569123_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	39.2
WP_149350708.1\|569625_571668_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_016528382.1\|571794_573222_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_149350709.1\|573448_577915_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_035498565.1\|584098_584281_+\|transposase	transposase	F6MIM4	Haemophilus_phage	7.7e-26	98.3
WP_005710362.1\|584609_584954_-	RidA family protein	NA	NA	NA	NA
WP_035494329.1\|585022_586042_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_015940068.1\|586483_587380_+	transcriptional regulator GcvA	Q6JIH3	Burkholderia_virus	9.4e-24	30.2
WP_010786074.1\|587401_588076_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_005710365.1\|588093_589077_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_149350710.1\|589920_590748_+	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_112063083.1\|590842_591832_-	2-hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	9.9e-67	40.9
WP_075592122.1\|591841_592909_-	hypothetical protein	NA	NA	NA	NA
WP_005710372.1\|592905_593868_-	DNA cytosine methyltransferase	A7XXH6	Thermus_virus	1.1e-75	45.0
WP_005710374.1\|593875_594985_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_075592121.1\|594986_595988_-	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_149350711.1\|596123_597989_-	signal peptide peptidase SppA	A0A2H4UUF9	Bodo_saltans_virus	7.7e-12	23.1
WP_149350712.1\|598206_599988_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	1.5e-65	32.2
WP_005710383.1\|600127_600811_+	nicotinamide riboside transporter PnuC	U5J9C5	Bacillus_phage	1.0e-38	37.8
WP_005710385.1\|600903_601614_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
601402:601417	attR	NA	NA	NA	NA
WP_005710387.1\|601614_602241_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	NA	NA	NA
WP_005710389.1\|602250_602913_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_005710391.1\|602959_603700_+	heme ABC transporter permease	NA	NA	NA	NA
WP_010786065.1\|603708_603903_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_035520421.1\|604067_605456_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_035520422.1\|605694_606870_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_149350713.1\|607013_608093_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_149350714.1\|608265_609066_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	8.7e-13	29.4
WP_149350715.1\|609078_609717_+	nitroreductase family protein	NA	NA	NA	NA
WP_015940082.1\|609805_610339_+	TIGR00645 family protein	K4K6D8	Caulobacter_phage	4.4e-21	32.3
WP_075592116.1\|610423_611722_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_010786058.1\|612255_612735_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_149350716.1\|612734_613670_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	5.2e-41	37.0
WP_010786056.1\|613731_614313_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_016528180.1\|614552_615524_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.4e-09	29.6
WP_035492316.1\|615567_616728_-\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_016528332.1\|616928_617156_-	hypothetical protein	NA	NA	NA	NA
WP_149350717.1\|618332_619772_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_005710423.1\|622459_622834_-	Soluble cytochrome b562	NA	NA	NA	NA
WP_005710425.1\|622910_624128_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_005710426.1\|624291_625590_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	9.3e-73	36.4
WP_005710428.1\|625872_626760_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_010786044.1\|626762_627977_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

DBSCAN-SWA_4

1201140 : 1210170

Klosneuvirus(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010786902.1\|1201140_1203768_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.0e-78	37.4
WP_005711547.1\|1203831_1204017_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.4e-11	66.7
WP_026917079.1\|1204196_1205084_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	8.0e-60	45.2
WP_016528180.1\|1205133_1206105_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.4e-09	29.6
WP_149351294.1\|1206358_1207384_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IT49	uncultured_Mediterranean_phage	3.7e-16	28.7
WP_012621741.1\|1207393_1208059_+	(d)CMP kinase	NA	NA	NA	NA
WP_149350903.1\|1208155_1209823_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_005711533.1\|1209888_1210170_+	integration host factor subunit beta	A4JWM7	Burkholderia_virus	2.4e-10	44.4

DBSCAN-SWA_5

1238824 : 1280850

Escherichia_phage(20.0%)

protease,integrase,transposase,tail

attL 1234154:1234177|attR 1249901:1249924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1234154:1234177	attL	NA	NA	NA	NA
WP_149350914.1\|1238824_1240744_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.6e-36	28.9
WP_010786936.1\|1240869_1241199_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_149350915.1\|1241494_1242742_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	8.7e-60	34.1
WP_149350916.1\|1243432_1244170_+\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	8.7e-68	53.7
WP_149350917.1\|1244166_1244448_-	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	2.3e-08	36.6
WP_149350918.1\|1244459_1244738_-	Killer protein	A0A0M3LQB1	Mannheimia_phage	2.4e-18	50.0
WP_075605575.1\|1244808_1245150_+	cell wall hydrolase	K7PLW1	Enterobacteria_phage	1.0e-26	55.9
WP_005714474.1\|1245215_1245692_+	hypothetical protein	NA	NA	NA	NA
WP_010786952.1\|1245914_1246385_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_149350919.1\|1246386_1247253_+	SIS domain-containing protein	NA	NA	NA	NA
WP_005714470.1\|1247334_1248216_+	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_149350920.1\|1248279_1249467_-	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA
WP_149351295.1\|1253947_1254319_+	hypothetical protein	NA	NA	NA	NA
1249901:1249924	attR	NA	NA	NA	NA
WP_035491572.1\|1254857_1256054_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_016527940.1\|1256298_1256568_+	antitoxin ChpS	NA	NA	NA	NA
WP_026916477.1\|1256561_1256924_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_062924471.1\|1257011_1257902_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA
WP_149350921.1\|1257901_1259200_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_005712575.1\|1259243_1259561_-	DUF496 family protein	NA	NA	NA	NA
WP_005712577.1\|1259776_1260418_+	starvation protein A	NA	NA	NA	NA
WP_010786960.1\|1260419_1260827_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	8.9e-22	46.1
WP_016527943.1\|1261005_1261965_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005712581.1\|1262075_1264211_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_016527945.1\|1264319_1265519_-	acetate kinase	NA	NA	NA	NA
WP_149350922.1\|1265721_1266930_-	type II secretion system protein GspD	NA	NA	NA	NA
WP_149350923.1\|1266914_1268081_-	hypothetical protein	NA	NA	NA	NA
WP_010786966.1\|1268220_1268496_-	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_149350924.1\|1268505_1269348_-	hypothetical protein	NA	NA	NA	NA
WP_149350925.1\|1269360_1270569_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.3e-49	48.1
WP_012621948.1\|1270628_1271726_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_149350926.1\|1272085_1273186_+	restriction endonuclease	A0A2H4J4K4	uncultured_Caudovirales_phage	1.1e-42	56.7
WP_035496822.1\|1273228_1274341_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_149350927.1\|1274337_1275309_-	modification methylase	A0A1B0XVT8	Campylobacter_phage	2.0e-40	43.2
WP_021117410.1\|1278441_1278873_-	PIN domain-containing protein	NA	NA	NA	NA
WP_035490647.1\|1278872_1280042_-	AAA family ATPase	NA	NA	NA	NA
WP_149350928.1\|1280352_1280850_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1294088 : 1303916

Bacillus_virus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149350933.1\|1294088_1296332_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	7.9e-88	31.0
WP_149351296.1\|1296365_1297694_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.3e-42	38.8
WP_075620774.1\|1297807_1299070_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	4.3e-99	53.2
WP_005712612.1\|1299416_1300427_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_012621703.1\|1300573_1300852_+	peptidase	A0A0M3LQB1	Mannheimia_phage	2.6e-17	48.9
WP_005712616.1\|1300862_1301135_+	HigA family addiction module antidote protein	A0A2P1MXE5	Escherichia_phage	2.2e-08	42.5
WP_005712618.1\|1301198_1302419_+	ATP-dependent RNA helicase RhlB	E3T5E1	Cafeteria_roenbergensis_virus	2.0e-40	31.1
WP_062923800.1\|1302428_1303916_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.5e-82	45.6

DBSCAN-SWA_7

1335696 : 1440678

106

Mannheimia_phage(40.0%)

tail,terminase,tRNA,capsid,protease,head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149350943.1\|1335696_1337100_+\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	4.8e-83	37.5
WP_080513235.1\|1337277_1337550_+	hypothetical protein	NA	NA	NA	NA
WP_005712467.1\|1337543_1337804_-	DinI-like family protein	NA	NA	NA	NA
WP_149350944.1\|1338069_1339164_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.0e-19	27.6
WP_149350945.1\|1339198_1342363_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	1.5e-76	26.6
WP_149350946.1\|1343267_1344299_-	hypothetical protein	NA	NA	NA	NA
WP_149350947.1\|1344273_1345659_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_149350948.1\|1345651_1347304_-	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	1.8e-49	28.2
WP_149350882.1\|1347715_1348681_+\|transposase	transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_010786869.1\|1348755_1349379_-	MarC family protein	NA	NA	NA	NA
WP_149350949.1\|1349458_1351372_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.9e-67	30.4
WP_016527818.1\|1351492_1351741_-	hypothetical protein	NA	NA	NA	NA
WP_149350950.1\|1351703_1353632_-\|protease	ATP-dependent zinc metalloprotease FtsH	G9E4U6	Ostreococcus_lucimarinus_virus	9.1e-117	43.2
WP_010786866.1\|1353705_1354332_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_149350951.1\|1354574_1355363_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_010786865.1\|1355442_1356105_+	Fic family protein	NA	NA	NA	NA
WP_012621770.1\|1356162_1356459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005714197.1\|1356461_1356806_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_149350952.1\|1357020_1359000_+	exoribonuclease II	NA	NA	NA	NA
WP_005714201.1\|1359110_1360202_+	murein transglycosylase A	NA	NA	NA	NA
WP_149350953.1\|1361203_1364458_-	hypothetical protein	NA	NA	NA	NA
WP_005714340.1\|1365558_1366155_-	DedA family protein	NA	NA	NA	NA
WP_005714341.1\|1366165_1367188_-	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	1.2e-35	33.8
WP_010786764.1\|1367302_1368247_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_005714346.1\|1368333_1368864_+	endonuclease SmrB	NA	NA	NA	NA
WP_149350954.1\|1369005_1370223_-	tyrosine transporter	NA	NA	NA	NA
WP_149350955.1\|1370370_1371585_-	amino acid permease	NA	NA	NA	NA
WP_010786761.1\|1372381_1372861_-	redoxin family protein	NA	NA	NA	NA
WP_035491394.1\|1372878_1373529_-	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_035494346.1\|1373530_1374601_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_149350956.1\|1374704_1375133_-	hypothetical protein	NA	NA	NA	NA
WP_005713976.1\|1375274_1375847_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_005713975.1\|1375843_1376029_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_051453330.1\|1377183_1377480_-	hypothetical protein	A0A0M3LRV4	Mannheimia_phage	5.4e-21	59.8
WP_149350957.1\|1377647_1378463_+\|capsid	GPO family capsid scaffolding protein	A0A0M3LSA0	Mannheimia_phage	8.2e-51	61.0
WP_016528073.1\|1378475_1378679_+	hypothetical protein	NA	NA	NA	NA
WP_149350958.1\|1378678_1379332_+\|terminase	terminase	A4JWP8	Burkholderia_virus	6.4e-38	42.1
WP_010786754.1\|1379366_1379504_+	hypothetical protein	NA	NA	NA	NA
WP_038513807.1\|1379487_1380012_+	lysozyme	A0A0M3LQY4	Mannheimia_phage	3.4e-50	57.4
WP_035494338.1\|1379996_1380464_+	hypothetical protein	NA	NA	NA	NA
WP_012621781.1\|1380646_1381165_+	hypothetical protein	NA	NA	NA	NA
WP_005713957.1\|1381370_1381589_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.6e-22	72.6
WP_149350959.1\|1381585_1382020_+\|tail	phage tail protein	Q19UR3	Mannheimia_phage	5.5e-38	55.6
WP_044008948.1\|1382060_1382522_+	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	6.7e-42	61.7
WP_044008946.1\|1384249_1385188_-	Ig domain-containing protein	A0A0D4DBM4	Acinetobacter_phage	2.7e-114	64.1
WP_149350960.1\|1385199_1385958_-	hypothetical protein	A0A0M3LQV7	Mannheimia_phage	5.1e-63	63.3
WP_021114927.1\|1386082_1386559_-	hypothetical protein	A0A0M3LR56	Mannheimia_phage	3.9e-29	57.3
WP_005714625.1\|1386613_1387033_-	HD domain-containing protein	D0UIJ3	Aggregatibacter_phage	1.8e-41	66.2
WP_005714623.1\|1387032_1387251_-	hypothetical protein	A0A0M3LPI7	Mannheimia_phage	8.9e-29	80.6
WP_149350961.1\|1387250_1387883_-	hypothetical protein	A0A0M3LQ07	Mannheimia_phage	5.0e-56	53.8
WP_005714619.1\|1387951_1388158_-	hypothetical protein	NA	NA	NA	NA
WP_149350962.1\|1388154_1388466_-	hypothetical protein	NA	NA	NA	NA
WP_149350963.1\|1388468_1390064_-\|head	phage head morphogenesis protein	A0A0M3LQ07	Mannheimia_phage	9.5e-136	70.1
WP_149350964.1\|1390020_1391418_-	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	3.8e-165	64.8
WP_149350965.1\|1391427_1392663_-\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	7.7e-194	79.5
WP_044008920.1\|1392646_1393099_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	8.6e-34	57.9
WP_021110724.1\|1393267_1393417_-	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	6.9e-17	83.0
WP_149351300.1\|1393445_1393763_-	DUF2570 family protein	NA	NA	NA	NA
WP_149350966.1\|1393762_1394308_-	glycoside hydrolase family protein	Q19UR6	Mannheimia_phage	9.3e-43	49.7
WP_149351301.1\|1394282_1394570_-	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.2e-12	55.0
WP_012621835.1\|1394695_1395259_+	hypothetical protein	NA	NA	NA	NA
WP_005714898.1\|1395604_1395790_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_005714900.1\|1395819_1396257_+	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.4e-20	36.9
WP_021109621.1\|1396278_1396656_-	ECF sigma factor family protein	Q7Y5V5	Haemophilus_phage	1.4e-08	29.5
WP_149350967.1\|1396652_1397222_-	recombination protein NinG	A0A0U4KL68	Pseudomonas_phage	1.7e-50	55.1
WP_005715063.1\|1397468_1397651_+	addiction module toxin, HicA family	A0A0D4DC32	Acinetobacter_phage	4.5e-18	74.6
WP_021113997.1\|1397677_1398091_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	1.4e-38	55.5
WP_149350968.1\|1398124_1398553_-	recombination protein NinB	Q7Y5V7	Haemophilus_phage	3.6e-42	57.9
WP_149350969.1\|1398614_1399970_-	AAA family ATPase	A0A0M3LQC0	Mannheimia_phage	1.5e-153	61.6
WP_021114967.1\|1399969_1400848_-	replication protein	A0A0M3LQL8	Mannheimia_phage	2.0e-31	33.0
WP_016527563.1\|1401346_1401547_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149350970.1\|1401677_1402361_+	S24 family peptidase	K7PKK1	Enterobacteria_phage	3.1e-19	31.1
WP_005714534.1\|1402460_1403309_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	2.8e-70	52.4
WP_149350971.1\|1403489_1404329_+	DUF3800 domain-containing protein	A5X9G9	Aeromonas_virus	4.2e-58	44.3
WP_016527868.1\|1404356_1404647_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.8e-13	46.6
WP_005714539.1\|1404706_1405153_+	hypothetical protein	NA	NA	NA	NA
WP_012621801.1\|1405756_1406044_+	hypothetical protein	NA	NA	NA	NA
WP_016527559.1\|1406070_1406241_-	DUF1508 domain-containing protein	NA	NA	NA	NA
WP_012621803.1\|1406255_1406477_+	hypothetical protein	NA	NA	NA	NA
WP_149350972.1\|1407055_1407589_+	hypothetical protein	NA	NA	NA	NA
WP_149350973.1\|1408172_1408775_+	Bro-N domain-containing protein	Q7Y5X0	Haemophilus_phage	1.3e-32	46.2
WP_021109636.1\|1410592_1411411_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	1.0e-08	37.6
WP_010786722.1\|1411420_1412500_-	lytic murein transglycosylase	NA	NA	NA	NA
WP_149350974.1\|1412512_1413430_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_149350975.1\|1413432_1413816_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_149350976.1\|1413984_1417062_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_010786718.1\|1417756_1418044_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_012621948.1\|1418282_1419380_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_149350977.1\|1419502_1420798_+	trigger factor	NA	NA	NA	NA
WP_016528656.1\|1420900_1421353_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_005711146.1\|1421381_1421888_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_149350978.1\|1422418_1422907_+\|transposase	transposase	NA	NA	NA	NA
WP_149350979.1\|1423101_1423986_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_015939791.1\|1424190_1425789_-	carbon starvation protein A	NA	NA	NA	NA
WP_026916728.1\|1426091_1427471_+	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	2.6e-25	29.6
WP_149350980.1\|1427648_1428389_-	YedE-related selenium metabolism membrane protein	NA	NA	NA	NA
WP_005711154.1\|1428667_1431265_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	9.0e-35	23.8
WP_005711156.1\|1431310_1432525_-	tryptophan-specific transporter	NA	NA	NA	NA
WP_149350981.1\|1432543_1433803_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_149350982.1\|1433840_1434599_-\|transposase	transposase	NA	NA	NA	NA
WP_005714915.1\|1434853_1435825_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_149350983.1\|1435856_1436900_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_149350984.1\|1436966_1437227_-	ribosome alternative rescue factor ArfA	NA	NA	NA	NA
WP_149350985.1\|1437435_1438191_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_010786702.1\|1438426_1439491_+	AI-2E family transporter	NA	NA	NA	NA
WP_021113631.1\|1439592_1440678_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA

DBSCAN-SWA_8

1463529 : 1473293

Ostreococcus_lucimarinus_virus(12.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075620718.1\|1463529_1464792_-	inorganic phosphate transporter	E5ES24	Ostreococcus_lucimarinus_virus	6.7e-60	35.7
WP_021109664.1\|1464811_1465492_-	TIGR00153 family protein	NA	NA	NA	NA
WP_012621869.1\|1465801_1466785_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	7.1e-33	38.0
WP_149350993.1\|1466940_1469328_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.4e-05	29.9
WP_005710633.1\|1469344_1469641_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.9e-12	38.9
WP_005710634.1\|1469693_1470206_+	endopeptidase	A0A0K2SUC1	Clostridium_phage	7.0e-16	39.1
WP_010786629.1\|1470393_1471047_+	uridine kinase	A0A1V0SAA3	Catovirus	1.1e-34	37.0
WP_005710639.1\|1471063_1471648_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.2e-29	40.5
WP_021116540.1\|1471778_1473293_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-80	39.4

DBSCAN-SWA_9

1531918 : 1589596

Burkholderia_phage(12.5%)

terminase,tRNA,integrase,protease,transposase

attL 1527347:1527363|attR 1553049:1553065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1527347:1527363	attL	NA	NA	NA	NA
WP_149351011.1\|1531918_1533169_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.3e-84	40.8
WP_005714503.1\|1533808_1534900_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_044009494.1\|1534958_1535543_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_081378468.1\|1536013_1536409_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_080661245.1\|1536347_1536662_+	hypothetical protein	NA	NA	NA	NA
WP_016527758.1\|1536870_1537494_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_149351012.1\|1537542_1539378_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_010787285.1\|1540085_1540457_-	hypothetical protein	NA	NA	NA	NA
WP_010787286.1\|1540748_1541297_-	ParA family protein	NA	NA	NA	NA
WP_010787288.1\|1541983_1542292_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	5.7e-05	44.9
WP_012621903.1\|1542266_1542545_-	BrnT family toxin	K4NX81	Burkholderia_phage	1.8e-10	42.4
WP_149351013.1\|1543245_1545420_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.8e-129	43.5
WP_149350533.1\|1545416_1545752_-	hypothetical protein	NA	NA	NA	NA
WP_149351302.1\|1545744_1546341_-	ash family protein	NA	NA	NA	NA
WP_075605892.1\|1546423_1547140_-	phage antirepressor Ant	A0A0P0ZDY7	Stx2-converting_phage	4.5e-21	50.0
WP_149351014.1\|1547270_1547684_-\|terminase	terminase small subunit	A0A1X9SFE5	Acinetobacter_phage	6.0e-34	62.6
WP_149351015.1\|1547671_1548022_-	hypothetical protein	NA	NA	NA	NA
WP_005713020.1\|1548046_1548241_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_149351016.1\|1548431_1549313_-	hypothetical protein	NA	NA	NA	NA
WP_075605889.1\|1549458_1550706_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	6.6e-52	32.7
WP_075605527.1\|1551144_1552017_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_010787048.1\|1552019_1552784_-	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_010787049.1\|1552860_1553715_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.6e-47	40.1
1553049:1553065	attR	NA	NA	NA	NA
WP_149351017.1\|1553922_1554789_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_005713005.1\|1554776_1556027_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_149351018.1\|1556070_1557153_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.1e-09	44.6
WP_005713002.1\|1557267_1557540_-	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	3.6e-19	56.7
WP_005713000.1\|1557671_1558268_-	DUF416 family protein	NA	NA	NA	NA
WP_149351019.1\|1558277_1559342_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_149351020.1\|1559401_1560205_-	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_005712996.1\|1560258_1561635_-	argininosuccinate lyase	NA	NA	NA	NA
WP_010787055.1\|1562043_1563156_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	1.9e-29	39.3
WP_012621919.1\|1563142_1564003_+	spermidine/putrescine ABC transporter permease PotB	NA	NA	NA	NA
WP_021109730.1\|1564002_1564770_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_149351021.1\|1565038_1566328_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_012621922.1\|1566337_1566958_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_044009482.1\|1567358_1568177_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_016527733.1\|1568173_1569322_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_021109740.1\|1570072_1570912_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_010787066.1\|1570969_1571536_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	NA	NA	NA
WP_021109738.1\|1571528_1572437_-	lysine exporter LysO family protein	NA	NA	NA	NA
WP_035495819.1\|1572580_1573651_+	DNA polymerase IV	NA	NA	NA	NA
WP_010787063.1\|1573756_1574608_+\|protease	protease HtpX	NA	NA	NA	NA
WP_149351022.1\|1574618_1576457_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_005714153.1\|1576489_1577038_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_035491186.1\|1577193_1577895_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_149351023.1\|1577894_1578956_+	molybdenum ABC transporter ATP-binding protein ModC	G3M9Y6	Bacillus_virus	2.7e-22	35.3
WP_005714158.1\|1579173_1579794_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	4.9e-56	53.1
WP_012621936.1\|1580976_1581621_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_005714322.1\|1582074_1583337_-	transcription termination factor Rho	NA	NA	NA	NA
WP_010787073.1\|1583511_1583913_+	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_149351024.1\|1583990_1584860_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_149351025.1\|1584930_1585701_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.2e-35	37.7
WP_149351026.1\|1585985_1587440_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	6.2e-41	28.0
WP_149351027.1\|1587698_1588685_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	5.7e-22	32.7
WP_012621943.1\|1589077_1589596_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1676528 : 1780060

101

Mannheimia_phage(32.26%)

tail,terminase,tRNA,protease,transposase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021109763.1\|1676528_1677956_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_149351054.1\|1678107_1681356_-	hypothetical protein	NA	NA	NA	NA
WP_149351055.1\|1682132_1684064_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-127	37.4
WP_010786358.1\|1684327_1684621_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149351304.1\|1684775_1687361_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.3e-187	42.8
WP_005712977.1\|1687443_1687938_+	hypothetical protein	NA	NA	NA	NA
WP_149351305.1\|1687942_1688965_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_010786355.1\|1688961_1689156_-	DNA gyrase inhibitor YacG	NA	NA	NA	NA
WP_010786354.1\|1689159_1689780_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_149351056.1\|1689865_1690213_-	ArsC family reductase	NA	NA	NA	NA
WP_005712965.1\|1690227_1691073_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	9.5e-18	25.8
WP_044009443.1\|1691236_1691914_-	TolC family protein	NA	NA	NA	NA
WP_044009442.1\|1692276_1692726_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_010786350.1\|1692864_1693605_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_010786349.1\|1693722_1694211_+	hypothetical protein	NA	NA	NA	NA
WP_005712956.1\|1694284_1694863_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.2e-09	27.8
WP_149351057.1\|1694914_1695895_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.5e-17	27.3
WP_021110211.1\|1695909_1696893_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-18	30.0
WP_021112627.1\|1696903_1697797_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_005712947.1\|1697825_1698830_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149351058.1\|1698923_1700519_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149351059.1\|1700765_1702106_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A1X9I6F4	Streptococcus_phage	6.7e-34	26.0
WP_149351060.1\|1702176_1703499_+	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_021110971.1\|1703517_1703934_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_021112622.1\|1703933_1704491_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_021112624.1\|1704491_1705226_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_016527661.1\|1705447_1706035_-	pyruvate formate lyase-activating enzyme 1 lipoprotein	NA	NA	NA	NA
WP_021114033.1\|1706118_1706430_+	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_021110966.1\|1706749_1707727_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_005712922.1\|1707863_1708643_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_021110053.1\|1708837_1709443_+	hypothetical protein	NA	NA	NA	NA
WP_149351061.1\|1709405_1709783_+	hypothetical protein	NA	NA	NA	NA
WP_149351062.1\|1711889_1712924_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FAD3	Synechococcus_phage	2.5e-68	41.0
WP_149351306.1\|1713112_1714060_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_075605881.1\|1714061_1714343_+	hypothetical protein	NA	NA	NA	NA
WP_149351063.1\|1714346_1715009_+	AAA family ATPase	NA	NA	NA	NA
WP_149351064.1\|1715068_1717885_+\|tRNA	isoleucine--tRNA ligase	A0A2K9V7W4	Bandra_megavirus	5.5e-78	25.5
WP_149351065.1\|1718395_1719763_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_149351066.1\|1719900_1720839_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_005713882.1\|1721179_1721971_-	hypothetical protein	NA	NA	NA	NA
WP_149351067.1\|1721999_1722878_-	DUF1983 domain-containing protein	A0A0M3LQ61	Mannheimia_phage	6.6e-14	62.5
WP_149351068.1\|1722840_1726107_-\|tail	phage tail protein	A0A0M3LQ61	Mannheimia_phage	7.9e-254	50.3
WP_149351307.1\|1726160_1726673_-\|tail	tail assembly protein	A0A0M3LPS1	Mannheimia_phage	2.0e-34	49.7
WP_149351069.1\|1726702_1727467_-\|tail	phage tail protein	A0A0M3LQI5	Mannheimia_phage	2.0e-67	50.0
WP_112062892.1\|1727456_1728194_-\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	6.7e-68	53.7
WP_020997028.1\|1728193_1728526_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.6e-13	40.0
WP_149351070.1\|1728570_1731945_-	tape measure protein	A0A0E3JQ03	Enterobacteria_phage	5.6e-61	25.5
WP_149351071.1\|1732000_1732276_-	hypothetical protein	NA	NA	NA	NA
WP_149351072.1\|1732361_1732589_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_005714571.1\|1732633_1733035_-	hypothetical protein	NA	NA	NA	NA
WP_149351073.1\|1733108_1733774_-	hypothetical protein	NA	NA	NA	NA
WP_149351074.1\|1733776_1734196_-\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	9.5e-11	33.3
WP_010786320.1\|1734195_1734729_-\|tail	phage tail component	M9NZH5	Enterobacteria_phage	6.4e-20	36.3
WP_012621828.1\|1734732_1735035_-\|tail	phage tail protein	NA	NA	NA	NA
WP_010786318.1\|1735027_1735354_-	DUF2190 family protein	NA	NA	NA	NA
WP_149351075.1\|1735421_1737389_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.2e-193	56.9
WP_149351076.1\|1737413_1738910_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.3e-155	57.3
WP_005714374.1\|1738914_1739136_-	hypothetical protein	K7PMB5	Enterobacterial_phage	1.3e-11	55.9
WP_075605742.1\|1739153_1741274_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	6.6e-270	66.5
WP_005714379.1\|1741273_1741741_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.3e-40	53.9
WP_149351077.1\|1742039_1742291_-	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	9.9e-24	64.6
WP_149351078.1\|1742308_1742458_-	lytic transglycosylase	A0A0M3LSZ0	Mannheimia_phage	3.4e-16	78.7
WP_149351079.1\|1742486_1742831_-	DUF2570 family protein	A0A0M3LSP1	Mannheimia_phage	1.2e-06	57.1
WP_149351080.1\|1742803_1743349_-	glycoside hydrolase family protein	Q19UR6	Mannheimia_phage	1.9e-43	49.5
WP_020996994.1\|1743323_1743587_-	hypothetical protein	A0A0M3LR95	Mannheimia_phage	1.3e-18	70.6
WP_005714705.1\|1743702_1744167_+	hypothetical protein	NA	NA	NA	NA
WP_021109607.1\|1744159_1744339_-	hypothetical protein	NA	NA	NA	NA
WP_012621837.1\|1744987_1745206_+	hypothetical protein	NA	NA	NA	NA
WP_149351081.1\|1745214_1745571_-	antitermination protein	Q7Y5V5	Haemophilus_phage	2.4e-07	28.8
WP_149351082.1\|1745666_1746143_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_010786228.1\|1747334_1749221_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.1e-110	35.1
WP_010786229.1\|1749245_1749449_+	hypothetical protein	NA	NA	NA	NA
WP_149351083.1\|1751069_1751711_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.9e-26	37.4
WP_149351084.1\|1751786_1752107_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_149351085.1\|1753534_1754971_+	sucrose-6-phosphate hydrolase	NA	NA	NA	NA
WP_005712412.1\|1755140_1755482_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005712415.1\|1756777_1757191_+	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_010786235.1\|1757261_1758101_-	metal ABC transporter permease	NA	NA	NA	NA
WP_015939623.1\|1758100_1758973_-	metal ABC transporter permease	NA	NA	NA	NA
WP_149351086.1\|1758976_1759738_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_149351087.1\|1759935_1760814_-	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_149351088.1\|1761005_1762037_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_005712424.1\|1762123_1762342_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_010786240.1\|1762437_1763103_-	hypothetical protein	NA	NA	NA	NA
WP_075620894.1\|1763188_1764052_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_149351089.1\|1764159_1764948_-	glycosyl transferase	NA	NA	NA	NA
WP_149351090.1\|1765056_1766010_-	cytochrome c nitrite reductase subunit NrfD	NA	NA	NA	NA
WP_005712433.1\|1766009_1766687_-	cytochrome c nitrite reductase Fe-S protein	NA	NA	NA	NA
WP_035519272.1\|1766683_1767307_-	cytochrome c nitrite reductase pentaheme subunit	NA	NA	NA	NA
WP_021109827.1\|1767327_1768767_-	ammonia-forming nitrite reductase cytochrome c552 subunit	NA	NA	NA	NA
WP_021113385.1\|1769091_1770669_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_021111075.1\|1770665_1770965_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_021111074.1\|1770961_1771390_-	nucleotidyltransferase substrate-binding, HI0074 family protein	NA	NA	NA	NA
WP_075592469.1\|1771470_1772703_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA
WP_005712442.1\|1772715_1773312_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA
WP_016527589.1\|1773313_1773937_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA
WP_016527590.1\|1773936_1774713_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_149351091.1\|1774705_1775944_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
WP_021113933.1\|1775948_1777295_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA
WP_026917150.1\|1777680_1778274_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA
WP_012621948.1\|1778962_1780060_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1923481 : 1930066

Mannheimia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149351144.1\|1923481_1923664_+	hypothetical protein	F6MIM4	Haemophilus_phage	1.4e-24	96.7
WP_149351145.1\|1924124_1924964_+	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	1.5e-55	57.6
WP_149351146.1\|1924960_1925575_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	6.3e-88	78.2
WP_010786201.1\|1925616_1925805_-	hypothetical protein	Q19US2	Mannheimia_phage	7.4e-08	50.0
WP_149351147.1\|1926148_1926742_+	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	1.2e-40	79.4
WP_005712171.1\|1926765_1927029_+	hypothetical protein	NA	NA	NA	NA
WP_005712169.1\|1927047_1927260_-	hypothetical protein	NA	NA	NA	NA
WP_005712166.1\|1927624_1928005_+	hypothetical protein	NA	NA	NA	NA
WP_015939642.1\|1928273_1928471_+	hypothetical protein	NA	NA	NA	NA
WP_015939641.1\|1928454_1928910_+	hypothetical protein	NA	NA	NA	NA
WP_149351148.1\|1929262_1930066_+	hypothetical protein	Q7Y5X0	Haemophilus_phage	2.0e-33	42.9

DBSCAN-SWA_12

1935853 : 1941559

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010786210.1\|1935853_1936645_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	3.1e-10	28.0
WP_021115180.1\|1936768_1937230_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.0e-43	58.8
WP_005714915.1\|1937312_1938284_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.4e-09	28.8
WP_015939637.1\|1938490_1939690_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.4e-99	49.2
WP_075620874.1\|1939821_1940466_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.2e-42	42.1
WP_010786214.1\|1940467_1941559_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.1e-50	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040243

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection