CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	1 crisprs	csa3,WYL	0	1	3	0
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	6 crisprs	cas3,DEDDh,DinG,csa3,WYL	5	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031887_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031887_1

39181-39294

Orphan

Consensus_repeat	Method
AGGGACGTTTTGTAATTTGAGTCACTTATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031887_1

>merge|NZ_CP031887|1|39181-39294|CRISPRCasFinder
AGGGACGTTTTGTAATTTGAGTCACTTATATACTTTATTCTATACATAATAGGTGTTATAATTCGTTTGATTGTTATTATAGAGGGACGTTTTGTAATTTGAGTCACTTATATA

>NZ_CP031887|1|1|39181-39294|CRISPRCasFinder
AGGGACGTTTTGTAATTTGAGTCACTTATATA	CTTTATTCTATACATAATAGGTGTTATAATTCGTTTGATTGTTATTATAG
AGGGACGTTTTGTAATTTGAGTCACTTATATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031887.1\|WP_000889978.1\|33983_34079_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	unknown
NZ_CP031887.1\|WP_002505613.1\|43322_44036_-\|DUF536-domain-containing-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_000466617.1\|49362_49548_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_001181107.1\|46994_47978_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|369151
NZ_CP031887.1\|WP_002485543.1\|35534_36047_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_000843732.1\|48403_49147_+\|DUF536-domain-containing-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_080035857.1\|38693_38783_+\|erm-Leader-peptide	unknown	unknown	unknown
NZ_CP031887.1\|WP_002447413.1\|42541_43144_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_CP031887.1\|WP_002477844.1\|39314_40172_+\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|227814
NZ_CP031887.1\|WP_002505615.1\|45741_45981_-\|DUF3847-domain-containing-protein	unknown	unknown	gnl\|CDD\|379000
NZ_CP031887.1\|WP_001106006.1\|34349_35024_+\|IS6-like-element-IS257-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP031887.1\|WP_070860667.1\|40226_41462_-\|aminoacyltransferase	unknown	unknown	gnl\|CDD\|367067
NZ_CP031887.1\|WP_002485549.1\|36079_36262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_149558617.1\|38187_38583_+\|mobilization-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_149558612.1\|35047_35209_+\|HAD-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|319818
NZ_CP031887.1\|WP_002505616.1\|45985_46264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031887.1\|WP_001002796.1\|49696_49792_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	unknown
NZ_CP031887.1\|WP_142556401.1\|36512_36899_+\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	gnl\|CDD\|368576
NZ_CP031887.1\|WP_149558613.1\|37064_38075_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP031887.1\|WP_083324673.1\|36877_37078_+\|mobilization-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP031887.1\|WP_070860667.1\|40226_41462_-\|aminoacyltransferase	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	2.82619e-155
NZ_CP031887.1\|WP_002477844.1\|39314_40172_+\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|227814	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair].	4.65604e-79
NZ_CP031887.1\|WP_149558612.1\|35047_35209_+\|HAD-hydrolase-family-protein	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.71855e-06
NZ_CP031887.1\|WP_001181107.1\|46994_47978_-\|replication-initiator-protein-A	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	4.64504e-29
NZ_CP031887.1\|WP_149558613.1\|37064_38075_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	1.88988e-85
NZ_CP031887.1\|WP_142556401.1\|36512_36899_+\|plasmid-mobilization-relaxosome-protein-MobC	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	0.00371879
NZ_CP031887.1\|WP_002447413.1\|42541_43144_+\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	2.29102e-108
NZ_CP031887.1\|WP_002505615.1\|45741_45981_-\|DUF3847-domain-containing-protein	gnl\|CDD\|379000	pfam12958, DUF3847, Protein of unknown function (DUF3847). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	2.25854e-05
NZ_CP031887.1\|WP_001106006.1\|34349_35024_+\|IS6-like-element-IS257-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.67984e-87

>NZ_CP031887.1|WP_080035857.1|38693_38783_+|erm-Leader-peptide
MVFLGAFIAIACALFIIFYLPYSEKRNKK
>NZ_CP031887.1|WP_149558617.1|38187_38583_+|mobilization-protein
MKDVKTDTHKAIEQLQTNQAELRQANNDYKKMIDERIKHNDTAMKQYDQAFHRLTKGITAMFFISALVMVAFLVLSPLGDWLGVQHFYELLNHVLKTGHSAWRYLMIVFYLVPYALFGLLIYAILSAYKRI
>NZ_CP031887.1|WP_149558613.1|37064_38075_+|relaxase/mobilization-nuclease-domain-containing-protein
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPEQCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIVINSIDLETGKKFNNNKKALRNVRDFNDEVCIEHGLSVPNKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLKQHGITIERVTPKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQHQQQTERATDTDVQPKQRTSSRDEATERDTGVTQADWDQFAQDTNELERRRQAAESARLAHEKARRDREERARAKQASRQIINNDRDHGLEL
>NZ_CP031887.1|WP_083324673.1|36877_37078_+|mobilization-protein
MEHDPKIKMIVSAILFVMCLMILFYFLFFDPQFPVILCFSLLIFITGIDLYISYKKKKERDNNGDN
>NZ_CP031887.1|WP_142556401.1|36512_36899_+|plasmid-mobilization-relaxosome-protein-MobC
MSEQNTFVASNETVGRNRKPNRKAPKQISFRVSESEYLKLQQSAETLNMSVPAFVKKKAQGARLVAPKLDQATRQSVAKDLSMLGANANQIAKYCNQHQHEAPNYEALERNISELRERLDEIWNMIQK
>NZ_CP031887.1|WP_002485549.1|36079_36262_+|hypothetical-protein
MKDSIFWKKSFIPVYFIVALLAFLLFKFYIQTDNFSVYLLVAFVAILGLASIIYNSNTNR
>NZ_CP031887.1|WP_002485543.1|35534_36047_+|hypothetical-protein
MKHNILSKVILSTAIVTGSVAAPFVISDHNQTHAAEKQEGIGKLSQKNESTLHLSVNKNIKGTVSSNGELTLSDGKETKQMPTNATDKNGNEVVLAYKKSGDGFDIQVIKSSQERKTNWGKCALGTAGGAGTGGLGGASAGSVVPALGTAAGSVIGGVSGGAAGAAASCF
>NZ_CP031887.1|WP_149558612.1|35047_35209_+|HAD-hydrolase-family-protein
MVSYIFYFATEPFMAPYTNKGYAVKELCSYLQINMDDVYTIGDRKLIYLCLIP
>NZ_CP031887.1|WP_001106006.1|34349_35024_+|IS6-like-element-IS257-family-transposase
MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPVLYQIWKKKHKKAYYKWRVDETYIKIKGQWCYLYRAIDADGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS
>NZ_CP031887.1|WP_000889978.1|33983_34079_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MLEILVHITTTVISGCIIALFTHWLRNRNNK
>NZ_CP031887.1|WP_002477844.1|39314_40172_+|RepB-family-plasmid-replication-initiator-protein
MSGETVVYRNEMNLVPLRRFTSTEVDLFFTLCNKLKEQDTRKVIIPFEELKYLSNYYTRSQERFINDLEHVYDKMLNLTYVERNGRSFEKFVLFTSYKVDLDEECLSISVNPDLKHILNSITADFTKFELKEMTHLKSTYAKNMFRLLKQYKHTGYVKINIADFKNRLDIPKTYQMNDITKRVLKPIINELSSIFNNLNINKIKAKKGRKIEWLEFTFDAEKRIHSKRQPQMTNIGKPRQYISREKTPKWLEERTYGQQLQSDFDPQLEKDKEEFLKQLKLDWEE
>NZ_CP031887.1|WP_070860667.1|40226_41462_-|aminoacyltransferase
MKFVTLTEQEYQLFIEKHVVHYTQSIAHYNYRQKHKKDVHLVGVKDNEEVIAACLLSEAQVLKIFKYFYSHRGPVLDFNNEKLVECFFTGLTRYLKRHKGLFVLVDPYILESNRDADGRILKSYDNSNLINQLNHLGYQYQGHSIGYSDTSQIRWLSVLDLEGKNEKDVLNEMDYQTRRNIKKTYEMGVEVKTLNISQTDQFFELFQMAEEKHGFKFREKDYFEEMQNIYNNNSALKLAYIDLKKYLDQLNNKKLVLNEQIDEIKAKLKDNPNSKKNKNKYQELNKQLTSNQKHITKTENLIKSDGDVLHLASAYYIWNKDEVYYLSSGSNPKYNQFMGAYRLQWDMIKFALNNNIPRYNFYGITGDFSENAEDYGVQQFKKGFNAHVEEYVGDFIKPIRLIFYKVYKLLK
>NZ_CP031887.1|WP_002447413.1|42541_43144_+|short-chain-dehydrogenase
MKIVVIGATGTIGKSVSKKLKENNHEVIEVGSKSGDYQLDITSPTEIEQMYKDIKDIDAVVSATGGATFKSLSDMSLEENNVAIKSKLLGQINLVLIGQHYLNKNGSFTLTSGIMMDDPILLGSSAAMANGGVSGFVTSAAVELKNGLRINNVSPNVVEEALDKYGEFFKGFTAVPVDKVANAFIKSVEGAQTGQTYKVY
>NZ_CP031887.1|WP_002505613.1|43322_44036_-|DUF536-domain-containing-protein
MKSVKEISEELEVSKQTVFNNIKRLNIETIKKDNTSFIKNDVDVEKIIQRIIKNKKKYGFESTNINSEKVKTDNKNNESKYDVQIIELLEKQIDTLNKQLEKQEKRHETTIEFYRKELQERSKLLENQQVLALESNKKIQRLESELEEERQLNYSANKRQDIEVQETMDNMDSINSNSDNQKEKIVSQFSDESKDKHEDKQEDSESKQSDKIDDEQKKDIRIENHSKKSLWSRLFGN
>NZ_CP031887.1|WP_002505615.1|45741_45981_-|DUF3847-domain-containing-protein
MNDFKNLKKTTAAIEKAELRKNRLKNLDRKERAHRLIRKGAMLEKYFECEHLSPEETEALLKMYSNYINTNKPNKFKKK
>NZ_CP031887.1|WP_002505616.1|45985_46264_-|hypothetical-protein
MAKIKKSDITKLSQLEQQIEQLKGQKKKQEAQLSHKIGVYFLNKLDLDMINSSDELYKVMDKVIEEFKNAKPNSSDENNEDLTENEINQNSK
>NZ_CP031887.1|WP_001181107.1|46994_47978_-|replication-initiator-protein-A
MQNQYFTVQENYKERFYQIPKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSWVDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLENDGLLIQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVEPYGEKEVRKSNVQKFENRTSRSSKIERPEVRKSNTNDTDFNDIDFNDTENNDMNDLNDIKYKNEISNHSNHSNQFTHNFDDKEMLLQEFPEQLTNYLLKYDYRDLEIIKAVILKAKKSFNSRHEDMHYMLEDIEDEILTSLKRLKKAIHDRGVKGQKETIKSMQAYLMQTILTELEETHALYMRRKNMKQYNIFNQ
>NZ_CP031887.1|WP_000843732.1|48403_49147_+|DUF536-domain-containing-protein
MKSVKKLSEELGVSKQTIFNNIKRLNIETIKQENTSFIKEDTDIEKIIQRVNENKKKYGFESTTEDKQKKGSDNINFESKSDAQIVEILKNQIDTLNNQIEKQESRHETTIEFYRKELQERSKLLENQQVLALESNKKIQKLENQLEKEKHLNYPFDTSTNTRQNVDAQEKTYTTNPVNINRDQEETKETEIQYKDISGSQSDESTQGEEAKKEDVPANLNDNDSDIEEKSEETEPKKGFWSRLFGS
>NZ_CP031887.1|WP_000466617.1|49362_49548_-|hypothetical-protein
MFGDQRQEATKYVIKEGYQDIYFLNKNGEWYYFEVRSAWRGKHIIRVKDGLLGWRKEIVTE
>NZ_CP031887.1|WP_001002796.1|49696_49792_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MNEILVHIMTTVISGCLVTLFGYWLHKRDKK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031887_1	1.1\|39213\|50\|NZ_CP031887\|CRISPRCasFinder	39213-39262	50	NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	39213-39262	0	1.0

1. spacer 1.1|39213|50|NZ_CP031887|CRISPRCasFinder matches to NZ_CP031887 (Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence) position: , mismatch: 0, identity: 1.0

ctttattctatacataataggtgttataattcgtttgattgttattatag	CRISPR spacer
ctttattctatacataataggtgttataattcgtttgattgttattatag	Protospacer
**************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 36047

Staphylococcus_phage(57.89%)

integrase,transposase,tRNA

attL 14719:14736|attR 24167:24184

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000790712.1\|517_1960_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000690638.1\|1931_2525_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.5e-41	51.1
WP_000182645.1\|2788_3169_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096381.1\|3158_4916_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_149558609.1\|5022_5868_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	8.8e-32	34.4
WP_000418035.1\|6393_6813_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000481279.1\|6936_7908_+	oxidoreductase	NA	NA	NA	NA
WP_001791613.1\|8079_8172_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_000119690.1\|8328_8676_-	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	4.9e-13	36.8
WP_000616816.1\|8694_9312_-	cadmium resistance transporter CadD	NA	NA	NA	NA
WP_001004925.1\|10427_10622_-	hypothetical protein	NA	NA	NA	NA
WP_000691527.1\|10731_11424_+	hypothetical protein	NA	NA	NA	NA
WP_002505617.1\|12068_13988_+	MobA/MobL family protein	NA	NA	NA	NA
WP_002505618.1\|14415_14622_+	hypothetical protein	NA	NA	NA	NA
14719:14736	attL	NA	NA	NA	NA
WP_149558614.1\|15009_15756_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_000163435.1\|15782_18857_+\|tRNA	mupirocin-resistant isoleucine--tRNA ligase MupA	A0A2I2L3Y0	Orpheovirus	4.5e-150	31.0
WP_000282188.1\|18926_19814_+	phosphotransferase	NA	NA	NA	NA
WP_002487656.1\|19824_20988_+	MFS transporter	NA	NA	NA	NA
WP_012816694.1\|21061_21211_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0N9RU54	Staphylococcus_phage	2.9e-07	62.8
WP_002440499.1\|21165_21393_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_002440503.1\|22932_23124_-	hypothetical protein	NA	NA	NA	NA
WP_000493114.1\|23654_23750_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_001105960.1\|24223_24898_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
24167:24184	attR	NA	NA	NA	NA
WP_149558615.1\|25240_25438_+	hypothetical protein	NA	NA	NA	NA
WP_149558610.1\|25405_26065_-	RibD family protein	A0A1B0RXM8	Streptococcus_phage	5.3e-125	99.5
WP_072387101.1\|26175_26583_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
WP_149558616.1\|26555_26816_-	WYL domain-containing protein	E4ZFP5	Streptococcus_phage	2.1e-37	91.9
WP_001106022.1\|26847_27522_+\|transposase	IS6-like element IS257 family transposase	A0A0N9SKD3	Staphylococcus_phage	6.2e-129	100.0
WP_001118605.1\|27553_27976_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.0e-68	100.0
WP_000175735.1\|27985_28471_-	trimethoprim-resistant dihydrofolate reductase DfrC	A0A0N9S8H6	Staphylococcus_phage	1.1e-90	100.0
WP_000282655.1\|28512_29469_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.1e-190	100.0
WP_001105984.1\|29582_30257_+\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	3.8e-126	98.2
WP_049330258.1\|30748_31141_+	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	4.5e-71	99.2
WP_001028144.1\|31141_32581_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
WP_149558611.1\|33153_33819_-\|transposase	IS6-like element IS257-2 family transposase	A0A0N9RU54	Staphylococcus_phage	2.3e-107	91.5
WP_000889978.1\|33983_34079_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_001106006.1\|34349_35024_+\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.2e-126	97.3
WP_149558612.1\|35047_35209_+	HAD hydrolase family protein	NA	NA	NA	NA
WP_002485543.1\|35534_36047_+	hypothetical protein	Q4ZE83	Staphylococcus_phage	4.1e-40	67.4

DBSCAN-SWA_2

53105 : 53732

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000593103.1\|53105_53732_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.0e-22	33.7

DBSCAN-SWA_3

56740 : 58757

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000358995.1\|56740_57136_-	thioredoxin-dependent arsenate reductase	A0A2H4PQT9	Staphylococcus_phage	8.5e-62	86.3
WP_000153631.1\|57153_58443_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.3e-188	81.6
WP_000120603.1\|58442_58757_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4PQT4	Staphylococcus_phage	3.6e-39	73.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP031886

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031886_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_1

686029-686130

Orphan

Consensus_repeat	Method
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031886_1

>merge|NZ_CP031886|1|686029-686130|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAACCCCTAATTAATAAATTAAAAGGGG

>NZ_CP031886|1|1|686029-686130|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTG
CATAAGAACCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000532969.1\|682686_683403_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP031886.1\|WP_149558526.1\|690184_690727_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP031886.1\|WP_000081596.1\|678500_679145_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223742
NZ_CP031886.1\|WP_000358502.1\|691850_692534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP031886.1\|WP_149558525.1\|689805_690105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000687415.1\|684988_685855_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP031886.1\|WP_000733438.1\|689278_689668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP031886.1\|WP_149558524.1\|684228_684873_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
NZ_CP031886.1\|WP_001805574.1\|682137_682497_+\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
NZ_CP031886.1\|WP_000731644.1\|677342_678140_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP031886.1\|WP_001259685.1\|688768_689212_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP031886.1\|WP_000842865.1\|687951_688641_-\|DUF1129-family-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000367064.1\|686147_687368_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
NZ_CP031886.1\|WP_000152582.1\|687364_687853_+\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
NZ_CP031886.1\|WP_000844823.1\|683402_683876_+\|cupin	unknown	unknown	gnl\|CDD\|226072
NZ_CP031886.1\|WP_000148819.1\|691389_691848_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP031886.1\|WP_001129741.1\|679841_681992_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP031886.1\|WP_000120368.1\|675749_676757_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP031886.1\|WP_000820900.1\|690821_691388_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP031886.1\|WP_001806154.1\|683967_684084_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000532969.1\|682686_683403_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	1.24759e-136
NZ_CP031886.1\|WP_149558526.1\|690184_690727_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.39831e-27
NZ_CP031886.1\|WP_000081596.1\|678500_679145_+\|hypothetical-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	6.05655e-32
NZ_CP031886.1\|WP_000358502.1\|691850_692534_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000244831
NZ_CP031886.1\|WP_000687415.1\|684988_685855_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.62776e-39
NZ_CP031886.1\|WP_000733438.1\|689278_689668_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000121797
NZ_CP031886.1\|WP_149558524.1\|684228_684873_+\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.02496e-89
NZ_CP031886.1\|WP_001805574.1\|682137_682497_+\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.80838e-22
NZ_CP031886.1\|WP_000731644.1\|677342_678140_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.27934e-40
NZ_CP031886.1\|WP_001259685.1\|688768_689212_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.52512e-12
NZ_CP031886.1\|WP_000367064.1\|686147_687368_+\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.37741e-101
NZ_CP031886.1\|WP_000152582.1\|687364_687853_+\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
NZ_CP031886.1\|WP_000844823.1\|683402_683876_+\|cupin	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	3.31269e-71
NZ_CP031886.1\|WP_000148819.1\|691389_691848_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.78289e-77
NZ_CP031886.1\|WP_001129741.1\|679841_681992_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.6271e-20
NZ_CP031886.1\|WP_000120368.1\|675749_676757_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
NZ_CP031886.1\|WP_000820900.1\|690821_691388_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.34406e-61

>NZ_CP031886.1|WP_000687415.1|684988_685855_+|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISREQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVERPKA
>NZ_CP031886.1|WP_149558524.1|684228_684873_+|DUF402-domain-containing-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVKVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNRQKPQNKTNFEKSKQIKPKQYNQTKNHQQQKKN
>NZ_CP031886.1|WP_001806154.1|683967_684084_+|hypothetical-protein
MLQLFLMKLTLNGFENDKTIIFIFLKNHFYEEMCVLSN
>NZ_CP031886.1|WP_000844823.1|683402_683876_+|cupin
MKTAKQWINELQLESHPEGGFYRETIREVLKDGHRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGAYTTATLGTDIQNGDVLQYVVPKGTIFASSIENLNSYSLVGCMCQPAFEFKQFELFKQSELFVQYPHLKSVIEKYALK
>NZ_CP031886.1|WP_000532969.1|682686_683403_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKTVDDILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEEDQVTFEKLIDALEDLEDVQNVFHNVDLK
>NZ_CP031886.1|WP_001805574.1|682137_682497_+|HTH-type-transcriptional-regulator-SarX
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKYCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>NZ_CP031886.1|WP_001129741.1|679841_681992_+|helix-turn-helix-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPINDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKFNKCIMLNPEPLVGGMAQEVKEVILNYIDHYKNHLTDVIHIDEDKFEIPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINDIETTYYVEEAFMNVIRQLSPNEINHHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFDKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQTFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNNSLNINVTFNALYIIKIGKK
>NZ_CP031886.1|WP_000081596.1|678500_679145_+|hypothetical-protein
MSQNTNHSYFQQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>NZ_CP031886.1|WP_000731644.1|677342_678140_-|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>NZ_CP031886.1|WP_000120368.1|675749_676757_+|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>NZ_CP031886.1|WP_000367064.1|686147_687368_+|MFS-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>NZ_CP031886.1|WP_000152582.1|687364_687853_+|DUF456-domain-containing-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>NZ_CP031886.1|WP_000842865.1|687951_688641_-|DUF1129-family-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>NZ_CP031886.1|WP_001259685.1|688768_689212_+|GNAT-family-N-acetyltransferase
MRTLNKDEHNYIKQIASIHETLLSQSESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKQISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>NZ_CP031886.1|WP_000733438.1|689278_689668_+|hypothetical-protein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDNKKDEDKDKEASQDKQPKDQTKSSNKDNHKKPTSTDKDQKANDKHQP
>NZ_CP031886.1|WP_149558525.1|689805_690105_+|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESNTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>NZ_CP031886.1|WP_149558526.1|690184_690727_+|GNAT-family-N-acetyltransferase
MIYCETERLILRDWHEDDLLPFQKMNATYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSEYPFKELPLYEIGWRLLPEFWGKGLATEGANATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDRFELPNLSKYHLLKRQVRYYINLRK
>NZ_CP031886.1|WP_000820900.1|690821_691388_-|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHDPSYVQKAYNLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>NZ_CP031886.1|WP_000148819.1|691389_691848_-|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYINAQIRKQGGRHKGPPPFTKQDQKVFEQSLLRVIHRIKELD
>NZ_CP031886.1|WP_000358502.1|691850_692534_-|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKTQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

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Crispr_ID: NZ_CP031886_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_2

784824-784907

Unclear

Consensus_repeat	Method
GTAAGCTGACTTTACGTTAGCTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031886_2

>merge|NZ_CP031886|2|784824-784907|CRISPRCasFinder
GTAAGCTGACTTTACGTTAGCTTCTTTGTTGGGGCCCACACCCCAACTTGCACATTATCGTAAGCTGACTTTACGTCAGCTTCT

>NZ_CP031886|2|2|784824-784907|CRISPRCasFinder
GTAAGCTGACTTTACGTTAGCTTCT	TTGTTGGGGCCCACACCCCAACTTGCACATTATC
GTAAGCTGACTTTACGTCAGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000369722.1\|785155_786067_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP031886.1\|WP_000638419.1\|773903_774140_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP031886.1\|WP_000279414.1\|795434_796445_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP031886.1\|WP_000057562.1\|781884_783324_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP031886.1\|WP_000816297.1\|791525_792428_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP031886.1\|WP_000229257.1\|774408_776394_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP031886.1\|WP_000654030.1\|794368_795382_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP031886.1\|WP_000749393.1\|772243_773083_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP031886.1\|WP_000662699.1\|776401_779230_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP031886.1\|WP_000134963.1\|783390_784326_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP031886.1\|WP_000006551.1\|787169_788114_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP031886.1\|WP_001074749.1\|796583_797774_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP031886.1\|WP_000538142.1\|773256_773907_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_CP031886.1\|WP_000958224.1\|779606_780539_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP031886.1\|WP_001049165.1\|788676_789264_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP031886.1\|WP_000070822.1\|793130_793760_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP031886.1\|WP_001248939.1\|786063_787059_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP031886.1\|WP_000513299.1\|780544_781384_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP031886.1\|WP_000675904.1\|789445_791080_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP031886.1\|WP_001224792.1\|781391_781877_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000369722.1\|785155_786067_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
NZ_CP031886.1\|WP_000638419.1\|773903_774140_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP031886.1\|WP_000279414.1\|795434_796445_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP031886.1\|WP_000057562.1\|781884_783324_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.78879e-06
NZ_CP031886.1\|WP_000816297.1\|791525_792428_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.55253e-152
NZ_CP031886.1\|WP_000229257.1\|774408_776394_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP031886.1\|WP_000654030.1\|794368_795382_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
NZ_CP031886.1\|WP_000749393.1\|772243_773083_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.74116e-42
NZ_CP031886.1\|WP_000662699.1\|776401_779230_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP031886.1\|WP_000134963.1\|783390_784326_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP031886.1\|WP_000006551.1\|787169_788114_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NZ_CP031886.1\|WP_001074749.1\|796583_797774_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP031886.1\|WP_000538142.1\|773256_773907_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	2.8293e-58
NZ_CP031886.1\|WP_000958224.1\|779606_780539_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP031886.1\|WP_001049165.1\|788676_789264_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP031886.1\|WP_000070822.1\|793130_793760_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000190559
NZ_CP031886.1\|WP_001248939.1\|786063_787059_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NZ_CP031886.1\|WP_000513299.1\|780544_781384_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.44091e-119
NZ_CP031886.1\|WP_000675904.1\|789445_791080_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP031886.1\|WP_001224792.1\|781391_781877_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	3.25151e-30

>NZ_CP031886.1|WP_000134963.1|783390_784326_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP031886.1|WP_000057562.1|781884_783324_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP031886.1|WP_001224792.1|781391_781877_+|acetyltransferase
MRKFLSKTHHHTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNISIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP031886.1|WP_000513299.1|780544_781384_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSFGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIIYRRIKYNPPLYSKVGALPWPTKKVK
>NZ_CP031886.1|WP_000958224.1|779606_780539_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP031886.1|WP_000662699.1|776401_779230_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKNIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHHIEIESQTVQQMVDRIMELETRTKIQLLAPVISHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNEVPELDKNKNHTIEVVVDRLVVKEGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGQRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDK
>NZ_CP031886.1|WP_000229257.1|774408_776394_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDRGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP031886.1|WP_000638419.1|773903_774140_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP031886.1|WP_000538142.1|773256_773907_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENG
>NZ_CP031886.1|WP_000749393.1|772243_773083_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQQGTQVKTPVQHNYVSNVQAQKQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKRVVQQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP031886.1|WP_000369722.1|785155_786067_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP031886.1|WP_001248939.1|786063_787059_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP031886.1|WP_000006551.1|787169_788114_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP031886.1|WP_001049165.1|788676_789264_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP031886.1|WP_000675904.1|789445_791080_+|NAD-dependent-malic-enzyme
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPANVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANDRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTGAAGINPSQVLPVSLDVGTNNEQLLNDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLNEVIENIKPTVLIGTSTQTGAFTEDAVKEMFKHTERPVIFPLSNPTKLSEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLGLIASNAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPKYKSYI
>NZ_CP031886.1|WP_000816297.1|791525_792428_-|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINKESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>NZ_CP031886.1|WP_000070822.1|793130_793760_+|DUF4887-domain-containing-protein
MSNQNYDYKTNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQTNQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQASQQNSQSTTNKQNNANDK
>NZ_CP031886.1|WP_000654030.1|794368_795382_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>NZ_CP031886.1|WP_000279414.1|795434_796445_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>NZ_CP031886.1|WP_001074749.1|796583_797774_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK

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Crispr_ID: NZ_CP031886_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_3

791296-791375

Orphan

Consensus_repeat	Method
CAGCTTCTATGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031886_3

>merge|NZ_CP031886|3|791296-791375|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCC

>NZ_CP031886|3|3|791296-791375|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTATGTTGGGGCCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000369722.1\|785155_786067_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP031886.1\|WP_001085498.1\|798659_800177_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP031886.1\|WP_000057562.1\|781884_783324_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP031886.1\|WP_001049165.1\|788676_789264_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP031886.1\|WP_000654030.1\|794368_795382_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP031886.1\|WP_001224792.1\|781391_781877_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP031886.1\|WP_000785252.1\|801949_802408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000134963.1\|783390_784326_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP031886.1\|WP_001260089.1\|797895_798657_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP031886.1\|WP_000006551.1\|787169_788114_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP031886.1\|WP_001121760.1\|800306_801611_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP031886.1\|WP_001074749.1\|796583_797774_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP031886.1\|WP_000556760.1\|802474_802708_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP031886.1\|WP_000279414.1\|795434_796445_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP031886.1\|WP_000070822.1\|793130_793760_+\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP031886.1\|WP_000816297.1\|791525_792428_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP031886.1\|WP_000513299.1\|780544_781384_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP031886.1\|WP_000675904.1\|789445_791080_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP031886.1\|WP_001248939.1\|786063_787059_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP031886.1\|WP_000958224.1\|779606_780539_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000369722.1\|785155_786067_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
NZ_CP031886.1\|WP_001085498.1\|798659_800177_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP031886.1\|WP_000057562.1\|781884_783324_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.78879e-06
NZ_CP031886.1\|WP_001049165.1\|788676_789264_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP031886.1\|WP_000654030.1\|794368_795382_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
NZ_CP031886.1\|WP_001224792.1\|781391_781877_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	3.25151e-30
NZ_CP031886.1\|WP_000134963.1\|783390_784326_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP031886.1\|WP_001260089.1\|797895_798657_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
NZ_CP031886.1\|WP_000006551.1\|787169_788114_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NZ_CP031886.1\|WP_001121760.1\|800306_801611_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP031886.1\|WP_001074749.1\|796583_797774_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP031886.1\|WP_000556760.1\|802474_802708_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
NZ_CP031886.1\|WP_000279414.1\|795434_796445_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP031886.1\|WP_000070822.1\|793130_793760_+\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000190559
NZ_CP031886.1\|WP_000816297.1\|791525_792428_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.55253e-152
NZ_CP031886.1\|WP_000513299.1\|780544_781384_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.44091e-119
NZ_CP031886.1\|WP_000675904.1\|789445_791080_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP031886.1\|WP_001248939.1\|786063_787059_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NZ_CP031886.1\|WP_000958224.1\|779606_780539_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170

>NZ_CP031886.1|WP_000675904.1|789445_791080_+|NAD-dependent-malic-enzyme
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPANVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANDRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTGAAGINPSQVLPVSLDVGTNNEQLLNDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLNEVIENIKPTVLIGTSTQTGAFTEDAVKEMFKHTERPVIFPLSNPTKLSEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLGLIASNAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPKYKSYI
>NZ_CP031886.1|WP_001049165.1|788676_789264_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP031886.1|WP_000006551.1|787169_788114_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP031886.1|WP_001248939.1|786063_787059_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP031886.1|WP_000369722.1|785155_786067_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP031886.1|WP_000134963.1|783390_784326_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP031886.1|WP_000057562.1|781884_783324_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP031886.1|WP_001224792.1|781391_781877_+|acetyltransferase
MRKFLSKTHHHTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNISIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP031886.1|WP_000513299.1|780544_781384_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSFGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIIYRRIKYNPPLYSKVGALPWPTKKVK
>NZ_CP031886.1|WP_000958224.1|779606_780539_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP031886.1|WP_000816297.1|791525_792428_-|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINKESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>NZ_CP031886.1|WP_000070822.1|793130_793760_+|DUF4887-domain-containing-protein
MSNQNYDYKTNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQTNQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQASQQNSQSTTNKQNNANDK
>NZ_CP031886.1|WP_000654030.1|794368_795382_+|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>NZ_CP031886.1|WP_000279414.1|795434_796445_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>NZ_CP031886.1|WP_001074749.1|796583_797774_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>NZ_CP031886.1|WP_001260089.1|797895_798657_+|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>NZ_CP031886.1|WP_001085498.1|798659_800177_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVEDQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>NZ_CP031886.1|WP_001121760.1|800306_801611_+|phosphopyruvate-hydratase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>NZ_CP031886.1|WP_000785252.1|801949_802408_+|hypothetical-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
>NZ_CP031886.1|WP_000556760.1|802474_802708_+|preprotein-translocase-subunit-SecG
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM

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Crispr_ID: NZ_CP031886_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_4

878013-878157

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGCCAG	PILER-CR
CAAGTTGGCGGGGCCCCAACACAGAAGCTGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP031886_4

>merge|NZ_CP031886|4|878013-878157|PILER-CR,CRISPRCasFinder
GGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGACAATACAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGTGGAAAGCCAG

>NZ_CP031886|4|1|878013-878157|PILER-CR
GGGGCCCCAACACAGAGAAATTTAGGAGCCAATTTCTACAGA	CAATACAAGTTGGCGGGGCCCCAACACAGAA
GCTGGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGG	GCCCCAACACAGAA
GCTGGTGGAAAGCCAG

>NZ_CP031886|4|4|878060-878146|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGAAGCTGG	CGAAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACACAGAAGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000573077.1\|866926_868423_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP031886.1\|WP_000185324.1\|878335_879265_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP031886.1\|WP_000167314.1\|875342_876533_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP031886.1\|WP_000172361.1\|886543_890020_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP031886.1\|WP_000138487.1\|876641_877886_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP031886.1\|WP_000838022.1\|873907_875035_+\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP031886.1\|WP_000660057.1\|880875_882081_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP031886.1\|WP_000781162.1\|871713_872097_-\|kinase	unknown	unknown	gnl\|CDD\|378054
NZ_CP031886.1\|WP_000154909.1\|890020_893674_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP031886.1\|WP_000035064.1\|872160_872754_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_CP031886.1\|WP_000711897.1\|885808_886384_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP031886.1\|WP_000894105.1\|884199_884385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_011443624.1\|868415_868745_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP031886.1\|WP_000758209.1\|885268_885793_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP031886.1\|WP_001081626.1\|868756_869185_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP031886.1\|WP_000007965.1\|884688_885264_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP031886.1\|WP_000066054.1\|879506_880886_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP031886.1\|WP_000148855.1\|882431_883763_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP031886.1\|WP_000054618.1\|869177_871583_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP031886.1\|WP_001067294.1\|873169_873547_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000573077.1\|866926_868423_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP031886.1\|WP_000185324.1\|878335_879265_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	7.97991e-151
NZ_CP031886.1\|WP_000167314.1\|875342_876533_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP031886.1\|WP_000172361.1\|886543_890020_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031886.1\|WP_000138487.1\|876641_877886_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP031886.1\|WP_000838022.1\|873907_875035_+\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP031886.1\|WP_000660057.1\|880875_882081_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP031886.1\|WP_000781162.1\|871713_872097_-\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	8.96507e-53
NZ_CP031886.1\|WP_000154909.1\|890020_893674_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031886.1\|WP_000035064.1\|872160_872754_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	2.08824e-65
NZ_CP031886.1\|WP_000711897.1\|885808_886384_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.63465e-53
NZ_CP031886.1\|WP_011443624.1\|868415_868745_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61
NZ_CP031886.1\|WP_000758209.1\|885268_885793_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.81012e-49
NZ_CP031886.1\|WP_001081626.1\|868756_869185_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP031886.1\|WP_000007965.1\|884688_885264_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	2.15479e-40
NZ_CP031886.1\|WP_000066054.1\|879506_880886_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP031886.1\|WP_000148855.1\|882431_883763_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP031886.1\|WP_000054618.1\|869177_871583_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP031886.1\|WP_001067294.1\|873169_873547_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44

>NZ_CP031886.1|WP_000138487.1|876641_877886_+|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP031886.1|WP_000167314.1|875342_876533_+|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP031886.1|WP_000838022.1|873907_875035_+|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDIELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTAQEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPIAVIEEVLKAKEMYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP031886.1|WP_001067294.1|873169_873547_+|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP031886.1|WP_000035064.1|872160_872754_+|peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYNGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP031886.1|WP_000781162.1|871713_872097_-|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHERKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP031886.1|WP_000054618.1|869177_871583_-|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLALPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWIWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDILGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPDKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTVFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP031886.1|WP_001081626.1|868756_869185_-|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP031886.1|WP_011443624.1|868415_868745_-|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_CP031886.1|WP_000573077.1|866926_868423_-|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>NZ_CP031886.1|WP_000185324.1|878335_879265_-|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKRHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP031886.1|WP_000066054.1|879506_880886_-|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDSDIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP031886.1|WP_000660057.1|880875_882081_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYQKALDMGAIECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFVKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGNSNEQ
>NZ_CP031886.1|WP_000148855.1|882431_883763_+|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP031886.1|WP_000894105.1|884199_884385_+|hypothetical-protein
MLESLYRKIQIVLIILTAVVCFNGLLNTNVTIKMNINIFVFSGILLLAFICWAYVKLNKFK
>NZ_CP031886.1|WP_000007965.1|884688_885264_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLIVFWIVGKKLEQHFMGSKKE
>NZ_CP031886.1|WP_000758209.1|885268_885793_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDHDNNQHDSRQFGLIDKKDIIGNISLRYYPFSKWTIQFKS
>NZ_CP031886.1|WP_000711897.1|885808_886384_+|signal-peptidase-I
MKKELLEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKYNFNPENTKN
>NZ_CP031886.1|WP_000172361.1|886543_890020_+|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKELIKYAKSVTIILTTDGNNDQFSLFRKPSEVLQHIEEIANELNISIERQYFNQFYRFNNQDLKHLEQEFDAFQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILYFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMDRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLTQIQALFNRLEITNIPRYHEVAPLSLMQHVKQTKIALFEALRSWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVQLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSAILDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFKLSGLVNADQAVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_CP031886.1|WP_000154909.1|890020_893674_+|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPDPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDGVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLATTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELALIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSKQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL

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Crispr_ID: NZ_CP031886_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_5

2234187-2234325

Orphan

Consensus_repeat	Method
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031886_5

>merge|NZ_CP031886|5|2234187-2234325|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

>NZ_CP031886|5|5|2234187-2234325|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	AGCTCACAAAACCCTTGATATCATTGGTTTCCCATGA
TTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000569649.1\|2241383_2242328_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NZ_CP031886.1\|WP_000143638.1\|2226226_2226505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_001622005.1\|2232860_2233061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000769707.1\|2229365_2229791_+\|MAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|367591
NZ_CP031886.1\|WP_000170975.1\|2236101_2236500_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP031886.1\|WP_000389669.1\|2239651_2240461_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184207
NZ_CP031886.1\|WP_000791632.1\|2237998_2238805_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP031886.1\|WP_001221849.1\|2237190_2237994_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP031886.1\|WP_000101625.1\|2242402_2242792_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NZ_CP031886.1\|WP_001044440.1\|2224497_2225352_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP031886.1\|WP_000090796.1\|2242815_2243181_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NZ_CP031886.1\|WP_001250038.1\|2236513_2236951_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP031886.1\|WP_000222277.1\|2221878_2224299_+\|polysaccharide-lyase-8-family-protein	unknown	unknown	gnl\|CDD\|238517
NZ_CP031886.1\|WP_000186132.1\|2230166_2230871_-\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
NZ_CP031886.1\|WP_000044372.1\|2228256_2229072_-\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319792
NZ_CP031886.1\|WP_000655242.1\|2233042_2233225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000542274.1\|2240998_2241367_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NZ_CP031886.1\|WP_000214774.1\|2226514_2228032_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340855
NZ_CP031886.1\|WP_000130128.1\|2230907_2232572_-\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP031886.1\|WP_000027572.1\|2238794_2239655_-\|energy-coupling-factor-transporter-ATPase	unknown	unknown	gnl\|CDD\|184205

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000569649.1\|2241383_2242328_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
NZ_CP031886.1\|WP_000769707.1\|2229365_2229791_+\|MAP-domain-containing-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	6.70728e-35
NZ_CP031886.1\|WP_000170975.1\|2236101_2236500_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.2295e-82
NZ_CP031886.1\|WP_000389669.1\|2239651_2240461_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP031886.1\|WP_000791632.1\|2237998_2238805_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.04502e-49
NZ_CP031886.1\|WP_000101625.1\|2242402_2242792_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
NZ_CP031886.1\|WP_001044440.1\|2224497_2225352_-\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	7.53812e-24
NZ_CP031886.1\|WP_000090796.1\|2242815_2243181_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.16257e-78
NZ_CP031886.1\|WP_001250038.1\|2236513_2236951_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
NZ_CP031886.1\|WP_000222277.1\|2221878_2224299_+\|polysaccharide-lyase-8-family-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
NZ_CP031886.1\|WP_000186132.1\|2230166_2230871_-\|acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.05414e-118
NZ_CP031886.1\|WP_000044372.1\|2228256_2229072_-\|HAD-IIB-family-hydrolase	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.68683e-98
NZ_CP031886.1\|WP_001221849.1\|2237190_2237994_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.32017e-120
NZ_CP031886.1\|WP_000542274.1\|2240998_2241367_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
NZ_CP031886.1\|WP_000214774.1\|2226514_2228032_+\|glycosyltransferase	gnl\|CDD\|340855	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.	2.16153e-60
NZ_CP031886.1\|WP_000130128.1\|2230907_2232572_-\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP031886.1\|WP_000027572.1\|2238794_2239655_-\|energy-coupling-factor-transporter-ATPase	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0

>NZ_CP031886.1|WP_000655242.1|2233042_2233225_-|hypothetical-protein
MKDSIFWKKAFIPVYFIVAMLVFLLFRFYIKTDNFSIYLMIIFLICLGTASIIYNYKTNR
>NZ_CP031886.1|WP_001622005.1|2232860_2233061_+|hypothetical-protein
MSLSLVFSRWRFEIVVLWWNEFVVLWRYKNAVLWQFQNGVSIKKSQQDLELTVTYTFHTYIYRLVL
>NZ_CP031886.1|WP_000130128.1|2230907_2232572_-|acetolactate-synthase-AlsS
MTDKKYTAADIVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGIVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>NZ_CP031886.1|WP_000186132.1|2230166_2230871_-|acetolactate-decarboxylase
MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHIRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDISDEIREAE
>NZ_CP031886.1|WP_000769707.1|2229365_2229791_+|MAP-domain-containing-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNLIDPSTIKQIQIVVK
>NZ_CP031886.1|WP_000044372.1|2228256_2229072_-|HAD-IIB-family-hydrolase
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVMTAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSIGNHNKDRRILESLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>NZ_CP031886.1|WP_000214774.1|2226514_2228032_+|glycosyltransferase
MTTYMLMYSIPEKAGGITSVMLNRSKLLAEKGYSCALLTLDDKNYDPLRAKLTNSGRLHKEVKIVNLYEELKMLYDVENTEIENKNMQTFEKLNLLNQEGFYIQKDEYEEKKYARYFKDNNYIMYKKWINGQLSHIDYFQNRKRIKRHVFQNKILRKEITFNDKNKMSEVKYLSNDGFCYLSYWYGDNENIVNIFYFDKNSKEVLNFKNNKMFHSYWLDKNLTSNDVLILDGIGTYPKVENMQNNDVKKIFTIHTNHFLSPYSYGAEIKPEFRNMLLNLKELDTLVVLTKEQKDDIIKQFGDYNNIKVIPNAVSFEENLTQNIREKNSIIVLQRFVAMKNITHIISAINIVRKKVKDVKLHIYGTGTQKENYTKLIKKLKLQDNVFIHDYAFDIRGLYTKASLSVLTSDYEGLPMSLLEAMSYGVPVISYPINYGPKSIIQNNINGIITKKKDNINELAKKIIHVLKKETLISQFSENARTTIKTNFSYEAVSKKWIELIDEKSK
>NZ_CP031886.1|WP_000143638.1|2226226_2226505_+|hypothetical-protein
MTFNEYNYNNELILKLNKIEVQKNNEKISEVFKDYEILKPKIVFNGSNPYLALNHIIVAEIENYSSLETFSKIYVDEDYYYNYGELIIKCKK
>NZ_CP031886.1|WP_001044440.1|2224497_2225352_-|M23-family-metallopeptidase
MNKTNFGDYLNKSKSRKIYKIFDQNLKREFSYWQFRKLFKSYTRQSDVHELKVCTQNDDTMEQIWIDKAKQFGVSVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKKQGKVNTDYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTNESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFLNNRELIKGDVVCGLQGE
>NZ_CP031886.1|WP_000222277.1|2221878_2224299_+|polysaccharide-lyase-8-family-protein
MTYRMKKWQKLSTITLLMAGVITLSDGEFRSVDKHQIAVADTNTQTPNYEKLKNTWLDVNYGYDKYDESNPDMKKKFEATENEAKKLLSEMKTESGRTYLWESSKDIDTKSADMTRTYRNIEKIAEAMNHPKTTLKNDENKKKLKDALEWLHKNAYGKDPDKKVADLKTNFSKSAPQKNTNLNWWDYEIGTPKSLTNTLILLNGDISSDEKKKYTAPIKTFAPKSDEILSSVGKAEPAKGGNLVDIAKVKLLESIIEEDKDMTKNSIDSFNKVFTYVQSNSTGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFKETSQNDTILKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASVTVMKSLLRLSDAMDESTKAKYKKIVKTSVKSDSSYKQNDYLSSYSDISKMKALMEDSTLSTNDLTQQLKIYNDMDRVTYHNKDLDFAFGLSMTSKNVARYESINNENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKENKNSDKTFVGGTKFDDQHASIGMEFENQDKTLTAKKSYFILNDKIVFLGTGIKNTDSSMNPVTTIENRKANGYTLYTDDKQTTNSDNQETNSVFLESTDTKKNIGYHFLNKSKINVKKESHTGKWSEINKSQKTEDKKDEYYEVTQKHSNSDNKYGYVLYPSLSKDVFKSKASQVTVVKQDDDFHVVKDNESVWAGVNYSDSAKTFEINGTKVEVKAKGMFILKKKDDKTYECSFYNPESTNTASDIESKISMTGYSITNKNASTTNESGVRFELTK
>NZ_CP031886.1|WP_000170975.1|2236101_2236500_-|30S-ribosomal-protein-S9
MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>NZ_CP031886.1|WP_001250038.1|2236513_2236951_-|50S-ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>NZ_CP031886.1|WP_001221849.1|2237190_2237994_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>NZ_CP031886.1|WP_000791632.1|2237998_2238805_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MKNKLIIGRYLPNDSYVHHLDPRAKLMFVFLFIILIFVCHSPLTYLWVFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>NZ_CP031886.1|WP_000027572.1|2238794_2239655_-|energy-coupling-factor-transporter-ATPase
MSIRFNDVSYTYQQGTPYEHQAIHDINTEFEQGKYYAIVGQTGSGKSTLIQNINALIKPTSGTVTIDDVTVTHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMDLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSVLAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKEKEKLAGWHIGLPDIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>NZ_CP031886.1|WP_000389669.1|2239651_2240461_-|energy-coupling-factor-transporter-ATPase
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIENVKSGEIFYNNQTITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRIVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTAIEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVNQL
>NZ_CP031886.1|WP_000542274.1|2240998_2241367_-|50S-ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>NZ_CP031886.1|WP_000569649.1|2241383_2242328_-|DNA-directed-RNA-polymerase-subunit-alpha
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>NZ_CP031886.1|WP_000101625.1|2242402_2242792_-|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
>NZ_CP031886.1|WP_000090796.1|2242815_2243181_-|30S-ribosomal-protein-S13
MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK

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Crispr_ID: NZ_CP031886_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031886_6

2425169-2425262

Orphan

Consensus_repeat	Method
TTCTTCAAATTTATTTGTTAGAAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP031886_6

>merge|NZ_CP031886|6|2425169-2425262|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGCTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTCTTCTTCAAATTTATTTGTTAGAAAGG

>NZ_CP031886|6|6|2425169-2425262|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGG	CTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTC
TTCTTCAAATTTATTTGTTAGAAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031886.1\|WP_000792549.1\|2425655_2426969_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288473
NZ_CP031886.1\|WP_000971558.1\|2432167_2433283_-\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234
NZ_CP031886.1\|WP_000825936.1\|2420377_2421157_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP031886.1\|WP_000019132.1\|2424161_2425028_-\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP031886.1\|WP_000916696.1\|2429001_2429949_+\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625
NZ_CP031886.1\|WP_000286884.1\|2431464_2432157_-\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP031886.1\|WP_000594516.1\|2427504_2428434_+\|bi-component-gamma-hemolysin-HlgAB-subunit-A	unknown	unknown	gnl\|CDD\|369625
NZ_CP031886.1\|WP_000615468.1\|2418949_2419681_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP031886.1\|WP_000479573.1\|2419677_2420397_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP031886.1\|WP_001110067.1\|2434269_2435628_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP031886.1\|WP_001056918.1\|2429950_2430928_+\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
NZ_CP031886.1\|WP_000200952.1\|2430986_2431454_-\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP031886.1\|WP_000762708.1\|2422890_2422995_+\|putative-metal-homeostasis-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_000038955.1\|2421277_2422717_-\|multidrug-efflux-MFS-transporter-MdeA	unknown	unknown	gnl\|CDD\|129794
NZ_CP031886.1\|WP_001012230.1\|2417602_2418853_+\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
NZ_CP031886.1\|WP_001125208.1\|2423148_2423835_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
NZ_CP031886.1\|WP_000819842.1\|2416985_2417348_-\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP031886.1\|WP_000162809.1\|2416367_2416967_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP031886.1\|WP_001791249.1\|2425456_2425561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031886.1\|WP_001046647.1\|2433260_2434268_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755

Protein	Function_ID	Function_description	E-value
NZ_CP031886.1\|WP_000792549.1\|2425655_2426969_+\|hypothetical-protein	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	7.22146e-28
NZ_CP031886.1\|WP_000971558.1\|2432167_2433283_-\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	5.99985e-138
NZ_CP031886.1\|WP_000825936.1\|2420377_2421157_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.4238e-99
NZ_CP031886.1\|WP_000019132.1\|2424161_2425028_-\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.98386e-90
NZ_CP031886.1\|WP_000916696.1\|2429001_2429949_+\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.96123e-92
NZ_CP031886.1\|WP_000594516.1\|2427504_2428434_+\|bi-component-gamma-hemolysin-HlgAB-subunit-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	2.15607e-97
NZ_CP031886.1\|WP_000615468.1\|2418949_2419681_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.59267e-145
NZ_CP031886.1\|WP_001110067.1\|2434269_2435628_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP031886.1\|WP_001056918.1\|2429950_2430928_+\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.68948e-128
NZ_CP031886.1\|WP_000200952.1\|2430986_2431454_-\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00103624
NZ_CP031886.1\|WP_000479573.1\|2419677_2420397_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	8.38308e-78
NZ_CP031886.1\|WP_000038955.1\|2421277_2422717_-\|multidrug-efflux-MFS-transporter-MdeA	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.17835e-92
NZ_CP031886.1\|WP_001012230.1\|2417602_2418853_+\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP031886.1\|WP_001125208.1\|2423148_2423835_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
NZ_CP031886.1\|WP_000819842.1\|2416985_2417348_-\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	1.83927e-31
NZ_CP031886.1\|WP_000162809.1\|2416367_2416967_-\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	7.90499e-30
NZ_CP031886.1\|WP_000286884.1\|2431464_2432157_-\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	4.99039e-130
NZ_CP031886.1\|WP_001046647.1\|2433260_2434268_-\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0

>NZ_CP031886.1|WP_000019132.1|2424161_2425028_-|cation-transporter
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNEITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>NZ_CP031886.1|WP_001125208.1|2423148_2423835_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>NZ_CP031886.1|WP_000762708.1|2422890_2422995_+|putative-metal-homeostasis-protein
MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK
>NZ_CP031886.1|WP_000038955.1|2421277_2422717_-|multidrug-efflux-MFS-transporter-MdeA
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGIVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIEMMNQIKIDTMLHGYHAGFLFALLITVISFFCSFMLQGKKKEVDSHQ
>NZ_CP031886.1|WP_000825936.1|2420377_2421157_-|transporter-substrate-binding-domain-containing-protein
MKRLLFVVIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKAEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSKSAFAFSKKVDDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>NZ_CP031886.1|WP_000479573.1|2419677_2420397_-|amino-acid-ABC-transporter-permease
MFLNLNSEQLHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKVLRSIARVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYRQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>NZ_CP031886.1|WP_000615468.1|2418949_2419681_-|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVGKGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEIFNNPKTEELKRFLNVINEE
>NZ_CP031886.1|WP_001012230.1|2417602_2418853_+|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLIDPYLIENLRNAEGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESAEDYGVQQFKKGFNAHVEEYIGDFIKPIKPMLYKLQTYLKHKRR
>NZ_CP031886.1|WP_000819842.1|2416985_2417348_-|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDERVSYKQDFDSRRYYQQHDADYHEENMTN
>NZ_CP031886.1|WP_000162809.1|2416367_2416967_-|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAEDHHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>NZ_CP031886.1|WP_001791249.1|2425456_2425561_-|hypothetical-protein
MLTNRLTSVNYVKKRLIQNIQRILSKKVLYGEMQ
>NZ_CP031886.1|WP_000792549.1|2425655_2426969_+|hypothetical-protein
MKNKYISKLLVGAATITLATMISNGEAKASENTQQSSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYYNKYYQYKGLIDKTVLTTIGSGYGSYIKPLEVSKESGNLAKSYAQVRNYVTESINTGKVLYAFYQKPELVKTAIKAQETATTFKNALTGIFKSFWK
>NZ_CP031886.1|WP_000594516.1|2427504_2428434_+|bi-component-gamma-hemolysin-HlgAB-subunit-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHEKGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>NZ_CP031886.1|WP_000916696.1|2429001_2429949_+|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLKNKILATTLSVSLLAPLANPLLEKAKAANDTEDIGKGNDVEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKNTNHIKSMRWPFQYNIGLKTNDPNVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFVTASGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRIHNAFKNRNYTVKYEVNWKTHEIKVKGQN
>NZ_CP031886.1|WP_001056918.1|2429950_2430928_+|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MNMNKLVKSSVATSMALLLLSNTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKAAGNINSGYERPNPKDYDFSKIYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNYKTRTFKSTYEIDWENHKVKLLDTKETEINK
>NZ_CP031886.1|WP_000200952.1|2430986_2431454_-|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLILSVILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>NZ_CP031886.1|WP_000286884.1|2431464_2432157_-|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQNLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLNHYISFLESTPKQVVYETV
>NZ_CP031886.1|WP_000971558.1|2432167_2433283_-|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKTVGYIDRQYIEVENQRCTNYTSNDYLGLGQIAFDKNDFEKFMRKYSYHLSSSRLISGSSAAYEEIETMLAGWLGYSACTILNSGYDANLTLFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAECPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKSLNVNYNSSNSPIKFIEFDDIEAAENIHQILLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>NZ_CP031886.1|WP_001046647.1|2433260_2434268_-|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYGTCENKENKNDVSRAN
>NZ_CP031886.1|WP_001110067.1|2434269_2435628_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKCKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPLLSMSNKEVKTMVRIFKKAVHNILDRKC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP031886_2	2.1\|784849\|34\|NZ_CP031886\|CRISPRCasFinder	784849-784882	34	NZ_CP031886.1	1017409-1017442	0	1.0
NZ_CP031886_3	3.1\|791320\|32\|NZ_CP031886\|CRISPRCasFinder	791320-791351	32	NZ_CP031886.1	228508-228539	0	1.0
NZ_CP031886_3	3.1\|791320\|32\|NZ_CP031886\|CRISPRCasFinder	791320-791351	32	NZ_CP031886.1	2307242-2307273	0	1.0
NZ_CP031886_3	3.1\|791320\|32\|NZ_CP031886\|CRISPRCasFinder	791320-791351	32	NZ_CP031886.1	2307298-2307329	0	1.0
NZ_CP031886_3	3.1\|791320\|32\|NZ_CP031886\|CRISPRCasFinder	791320-791351	32	NZ_CP031886.1	2465812-2465843	0	1.0
NZ_CP031886_3	3.1\|791320\|32\|NZ_CP031886\|CRISPRCasFinder	791320-791351	32	NZ_CP031886.1	1838094-1838125	2	0.938
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	228520-228533	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	265673-265686	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	784815-784828	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	791270-791283	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	829303-829316	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	878158-878171	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	991121-991134	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	1091526-1091539	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	1312057-1312070	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2261940-2261953	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2272745-2272758	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2272805-2272818	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2307198-2307211	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2307254-2307267	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2307310-2307323	0	1.0
NZ_CP031886_4	4.2\|878128\|14\|NZ_CP031886\|PILER-CR	878128-878141	14	NZ_CP031886.1	2465824-2465837	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	1091515-1091539	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	829303-829327	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	991121-991145	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2261940-2261964	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2272745-2272769	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2272805-2272829	0	1.0
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	228509-228533	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2049181-2049205	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2307187-2307211	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2307243-2307267	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2307299-2307323	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	2465813-2465837	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	784815-784839	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	791270-791294	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	1017434-1017458	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	1922485-1922509	1	0.96
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	265662-265686	2	0.92
NZ_CP031886_4	4.3\|878091\|25\|NZ_CP031886\|CRISPRCasFinder	878091-878115	25	NZ_CP031886.1	784697-784721	2	0.92
NZ_CP031886_5	5.1\|2234238\|37\|NZ_CP031886\|CRISPRCasFinder	2234238-2234274	37	NZ_CP031886.1	2234149-2234185	2	0.946

1. spacer 2.1|784849|34|NZ_CP031886|CRISPRCasFinder matches to position: 1017409-1017442, mismatch: 0, identity: 1.0

ttgttggggcccacaccccaacttgcacattatc	CRISPR spacer
ttgttggggcccacaccccaacttgcacattatc	Protospacer
**********************************

2. spacer 3.1|791320|32|NZ_CP031886|CRISPRCasFinder matches to position: 228508-228539, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

3. spacer 3.1|791320|32|NZ_CP031886|CRISPRCasFinder matches to position: 2307242-2307273, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

4. spacer 3.1|791320|32|NZ_CP031886|CRISPRCasFinder matches to position: 2307298-2307329, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

5. spacer 3.1|791320|32|NZ_CP031886|CRISPRCasFinder matches to position: 2465812-2465843, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

6. spacer 3.1|791320|32|NZ_CP031886|CRISPRCasFinder matches to position: 1838094-1838125, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacgttattgaaagctgactttccgc	Protospacer
*********.****** ***************

7. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 228520-228533, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

8. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 265673-265686, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

9. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 784815-784828, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

10. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 791270-791283, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

11. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 829303-829316, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

12. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 878158-878171, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

13. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 991121-991134, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

14. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 1091526-1091539, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

15. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 1312057-1312070, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

16. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2261940-2261953, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

17. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2272745-2272758, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

18. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2272805-2272818, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

19. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2307198-2307211, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

20. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2307254-2307267, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

21. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2307310-2307323, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

22. spacer 4.2|878128|14|NZ_CP031886|PILER-CR matches to position: 2465824-2465837, mismatch: 0, identity: 1.0

cttacaataatgtg	CRISPR spacer
cttacaataatgtg	Protospacer
**************

23. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 1091515-1091539, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

24. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 829303-829327, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

25. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 991121-991145, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

26. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2261940-2261964, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

27. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2272745-2272769, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

28. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2272805-2272829, mismatch: 0, identity: 1.0

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacaataatgtg	Protospacer
*************************

29. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 228509-228533, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

30. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2049181-2049205, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcatacaataatgtg	Protospacer
************ ************

31. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2307187-2307211, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

32. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2307243-2307267, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

33. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2307299-2307323, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

34. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 2465813-2465837, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

35. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 784815-784839, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgtaaagtcagcttacaataatgtg	Protospacer
** **********************

36. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 791270-791294, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cggaaagtcagcttacaataatgtg	Protospacer
**.**********************

37. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 1017434-1017458, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacgataatgtg	Protospacer
****************.********

38. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 1922485-1922509, mismatch: 1, identity: 0.96

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaagtcagcttacgataatgtg	Protospacer
****************.********

39. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 265662-265686, mismatch: 2, identity: 0.92

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgaaaatacagcttacaataatgtg	Protospacer
******  *****************

40. spacer 4.3|878091|25|NZ_CP031886|CRISPRCasFinder matches to position: 784697-784721, mismatch: 2, identity: 0.92

cgaaaagtcagcttacaataatgtg	CRISPR spacer
cgtaaagtcagcttacgataatgtg	Protospacer
** *************.********

41. spacer 5.1|2234238|37|NZ_CP031886|CRISPRCasFinder matches to position: 2234149-2234185, mismatch: 2, identity: 0.946

agctcacaaaacccttgatatcattggtttcccatga	CRISPR spacer
agctcacaaaacccttgatatcactggtttctcatga	Protospacer
***********************.*******.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

717098 : 724917

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244415.1\|717098_718154_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|718153_718840_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|718814_719288_-	DoxX family protein	NA	NA	NA	NA
WP_001093554.1\|719628_720069_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637683.1\|720348_720933_-	hypothetical protein	NA	NA	NA	NA
WP_001062976.1\|721031_721745_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|721748_722168_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446726.1\|722169_722838_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.4e-66	57.5
WP_000604517.1\|723188_723782_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	8.9e-39	44.0
WP_001217805.1\|723765_724917_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_2

736888 : 751164

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663021.1\|736888_737947_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.6e-20	26.9
WP_000197263.1\|738104_738653_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429016.1\|739340_740258_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
WP_031785486.1\|740348_740450_+	hypothetical protein	NA	NA	NA	NA
WP_000193753.1\|740527_742033_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.6e-58	32.2
WP_072468887.1\|742110_742302_-	hypothetical protein	NA	NA	NA	NA
WP_000930014.1\|742373_742874_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
WP_001068497.1\|742893_743760_-	DMT family transporter	NA	NA	NA	NA
WP_001793674.1\|744144_744294_+	hypothetical protein	NA	NA	NA	NA
WP_000692521.1\|744561_744960_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|744922_747028_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562500.1\|747145_748117_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.2e-171	91.3
WP_000876313.1\|748491_749463_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-140	79.9
WP_001245581.1\|749449_750406_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616861.1\|750402_751164_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.7e-16	30.6

DBSCAN-SWA_3

992744 : 1001217

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001622461.1\|992744_993227_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
WP_001010404.1\|993213_994338_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174048.1\|994341_995046_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.0e-46	41.2
WP_000848350.1\|995045_995309_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666803.1\|995310_995982_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032752.1\|995974_998164_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
WP_000483713.1\|998142_999627_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030827.1\|999619_1000648_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	41.7
WP_000238657.1\|1000650_1001217_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-29	39.6

DBSCAN-SWA_4

1256584 : 1271093

Staphylococcus_phage(57.14%)

portal,integrase,head,terminase

attL 1250407:1250424|attR 1274897:1274914

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1250407:1250424	attL	NA	NA	NA	NA
WP_000146714.1\|1256584_1257292_-\|integrase	tyrosine-type recombinase/integrase	V9QKF1	Oenococcus_phage	4.7e-10	26.2
WP_001183752.1\|1257344_1258040_-	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	1.4e-06	50.9
WP_000554409.1\|1258051_1258435_-	hypothetical protein	NA	NA	NA	NA
WP_001083979.1\|1258581_1258947_-	helix-turn-helix domain-containing protein	R9QTP6	Staphylococcus_phage	1.8e-21	47.9
WP_000842950.1\|1259108_1259345_+	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	7.4e-29	82.4
WP_000789021.1\|1259369_1259651_+	hypothetical protein	NA	NA	NA	NA
WP_000072840.1\|1259821_1259983_+	DUF1270 family protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
WP_000786995.1\|1260069_1260387_+	DUF2482 family protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
WP_000786635.1\|1260376_1260643_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.9e-18	53.6
WP_001004328.1\|1260647_1261184_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.1e-75	81.4
WP_000818736.1\|1261184_1261964_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	9.3e-129	88.8
WP_076679818.1\|1262044_1262539_+	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	9.9e-84	94.0
WP_000929467.1\|1262552_1263491_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	4.8e-47	48.1
WP_000945229.1\|1263491_1263782_+	hypothetical protein	A0A223LIA9	Staphylococcus_phage	5.5e-18	58.1
WP_000714365.1\|1263796_1263955_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	7.9e-19	90.4
WP_000185174.1\|1264263_1264794_+	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	8.0e-23	39.1
WP_025174108.1\|1264935_1265043_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.4e-06	84.4
WP_000835356.1\|1265039_1265504_+	hypothetical protein	C9E2P0	Enterococcus_phage	2.5e-20	43.7
WP_000602001.1\|1265504_1265738_+	hypothetical protein	NA	NA	NA	NA
WP_000653928.1\|1265780_1266269_+	hypothetical protein	R9TMH4	Paenibacillus_phage	1.9e-07	27.7
WP_000090969.1\|1266420_1266849_+	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
WP_000207539.1\|1266835_1268110_+\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	1.2e-194	76.4
WP_000158571.1\|1268122_1269571_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	2.8e-195	69.4
WP_149558608.1\|1270100_1271093_+\|head	head morphogenesis protein	Q4ZE35	Staphylococcus_virus	5.3e-52	70.4
1274897:1274914	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1543792 : 1552104

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1543792_1544578_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924214.1\|1544703_1545594_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062177.1\|1545603_1546950_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000683915.1\|1547063_1548164_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
WP_000624564.1\|1548166_1548844_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1548974_1550081_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_149558561.1\|1550304_1552104_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.7e-53	36.0

DBSCAN-SWA_6

1621474 : 1630518

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364543.1\|1621474_1621993_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8
WP_000594988.1\|1622014_1624288_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.3e-65	29.5
WP_000749795.1\|1624491_1626771_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|1627045_1627306_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|1627324_1628464_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019180.1\|1628486_1629512_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005764.1\|1629513_1630518_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_7

1753462 : 1799732

Staphylococcus_phage(91.43%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001050528.1\|1753462_1760020_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	2.3e-292	87.6
WP_000836464.1\|1760344_1760656_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	6.9e-51	97.1
WP_001108717.1\|1760677_1763092_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.7
WP_001025064.1\|1763383_1764565_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
WP_000526542.1\|1764674_1765628_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764418.1\|1765624_1766188_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	4.1e-102	98.4
WP_000757543.1\|1766304_1766706_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|1767276_1768104_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014937042.1\|1768106_1768226_-	hypothetical protein	NA	NA	NA	NA
WP_001196354.1\|1768337_1769339_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001008551.1\|1769460_1769925_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159030.1\|1769937_1771119_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
WP_000493880.1\|1771129_1771762_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.1e-110	97.6
WP_029549219.1\|1771768_1772800_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-195	98.8
WP_001261688.1\|1773293_1774796_-	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221174.1\|1775438_1775753_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.8e-51	96.2
WP_000989113.1\|1775752_1777045_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	3.0e-217	94.9
WP_001032834.1\|1777131_1777986_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1778260_1778485_-	hypothetical protein	NA	NA	NA	NA
WP_000671060.1\|1778683_1779154_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.8e-69	85.2
WP_001152694.1\|1779266_1779710_+	competence protein ComK	NA	NA	NA	NA
WP_001030473.1\|1779696_1780140_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.1e-49	77.9
WP_000492904.1\|1781238_1781859_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001096494.1\|1782535_1783249_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091443.1\|1783507_1783810_+	hypothetical protein	NA	NA	NA	NA
WP_001200545.1\|1784065_1784431_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	99.2
WP_149558569.1\|1784427_1784781_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	7.9e-19	90.6
WP_000453324.1\|1785030_1785864_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.3
WP_000366165.1\|1786075_1786984_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
WP_000933821.1\|1787108_1788302_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
WP_000109912.1\|1788673_1790266_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_001827685.1\|1790645_1791392_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	6.6e-140	97.6
WP_000672013.1\|1791396_1791870_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	7.2e-84	98.7
WP_000718111.1\|1791935_1792193_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.0e-44	97.6
WP_000778530.1\|1792189_1793191_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.1e-185	97.6
WP_000348383.1\|1793195_1794674_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.0e-277	95.1
WP_072468941.1\|1794832_1795288_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	2.3e-79	98.6
WP_001796416.1\|1795590_1796241_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	1.3e-30	70.4
WP_000070666.1\|1796321_1797317_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-73	97.2
WP_000669031.1\|1797392_1798019_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-85	84.1
WP_000627532.1\|1798059_1798401_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	4.8e-53	91.2
WP_149558570.1\|1798602_1799732_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	54.0

DBSCAN-SWA_8

1839409 : 1912397

Staphylococcus_phage(71.43%)

plate,head,holin,capsid,portal,integrase,terminase,tail,tRNA

attL 1897541:1897557|attR 1916438:1916454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000181394.1\|1839409_1839880_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_001796463.1\|1839884_1841027_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_001144055.1\|1841162_1841891_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
WP_000649917.1\|1841877_1843335_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_000063547.1\|1843593_1844655_-	PTS transporter subunit IIC	NA	NA	NA	NA
WP_000110011.1\|1853305_1853752_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_000869466.1\|1853848_1854799_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_000939524.1\|1854804_1855260_-	peroxiredoxin	NA	NA	NA	NA
WP_001011611.1\|1855340_1856630_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_001796444.1\|1856922_1858017_+	aromatic acid exporter family protein	NA	NA	NA	NA
WP_000597236.1\|1858207_1859944_-	SAV1866 family putative multidrug efflux ABC transporter	W8CYL7	Bacillus_phage	1.3e-53	30.4
WP_000251252.1\|1860233_1860776_-	DUF402 domain-containing protein	NA	NA	NA	NA
WP_000284741.1\|1861078_1862116_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000379095.1\|1862267_1863245_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_031785518.1\|1863348_1863579_+	hypothetical protein	NA	NA	NA	NA
WP_000886472.1\|1863505_1864342_-	hypothetical protein	NA	NA	NA	NA
WP_000535840.1\|1864350_1865868_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000435806.1\|1865882_1866197_-	YfhH family protein	NA	NA	NA	NA
WP_001124427.1\|1866174_1866993_-	recombination regulator RecX	NA	NA	NA	NA
WP_000830380.1\|1867253_1868063_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA
WP_000163283.1\|1868404_1868920_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_001005407.1\|1869053_1869215_-	hypothetical protein	NA	NA	NA	NA
WP_100250272.1\|1869561_1869642_+	hypothetical protein	NA	NA	NA	NA
WP_000382163.1\|1869967_1870168_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
WP_000139423.1\|1870154_1870265_-	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
WP_001788502.1\|1870335_1870488_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
WP_149558574.1\|1870730_1872176_-	CHAP domain-containing protein	Q4ZB16	Staphylococcus_virus	3.4e-294	99.4
WP_000354129.1\|1872156_1872594_-\|holin	phage holin	A7YGY0	Staphylococcus_virus	5.9e-72	97.9
WP_000398864.1\|1872649_1873045_-	hypothetical protein	A9CRD5	Staphylococcus_phage	4.7e-68	99.2
WP_000276656.1\|1873050_1874223_-\|plate	BppU family phage baseplate upper protein	A0A2I6PCW8	Staphylococcus_phage	2.2e-198	100.0
WP_000524041.1\|1874235_1876110_-	CHAP domain-containing protein	Q4ZB20	Staphylococcus_virus	0.0e+00	100.0
WP_000466784.1\|1876246_1876546_-	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_001800921.1\|1876586_1876760_-	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
WP_000406973.1\|1876769_1877147_-	DUF2977 domain-containing protein	Q4ZB23	Staphylococcus_virus	5.3e-61	100.0
WP_000259622.1\|1877146_1878970_-\|plate	BppU family phage baseplate upper protein	Q4ZDD5	Staphylococcus_virus	5.3e-284	95.9
WP_000323268.1\|1878969_1880868_-	hypothetical protein	Q4ZB26	Staphylococcus_virus	0.0e+00	98.4
WP_149558575.1\|1880880_1882767_-	peptidase	A1KXA8	Staphylococcus_virus	0.0e+00	99.7
WP_149558576.1\|1882777_1883719_-\|tail	phage tail protein	Q4ZBQ4	Staphylococcus_phage	9.1e-179	98.7
WP_000379439.1\|1883733_1886877_-	hypothetical protein	A0A059T7Q4	Staphylococcus_phage	0.0e+00	93.8
WP_000880588.1\|1886880_1887165_-	hypothetical protein	A0A0E3TAI0	Staphylococcus_phage	1.5e-44	98.9
WP_000134337.1\|1887209_1887716_-	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
WP_000057582.1\|1887781_1888339_-\|tail	tail protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
WP_000270188.1\|1888339_1888765_-	DUF3168 domain-containing protein	A0A0E3XBP2	Staphylococcus_phage	3.6e-74	99.3
WP_001151323.1\|1888777_1889185_-	HK97 gp10 family phage protein	A0A0E3T8J0	Staphylococcus_phage	3.4e-74	100.0
WP_000483041.1\|1889171_1889507_-\|head	phage head closure protein	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
WP_000177351.1\|1889518_1889869_-\|head,tail	phage head-tail adapter protein	A0A0H3U2R5	Staphylococcus_phage	1.9e-60	100.0
WP_000235168.1\|1890029_1890944_-\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
WP_001019221.1\|1890960_1891545_-	DUF4355 domain-containing protein	A0A2H4JDY6	uncultured_Caudovirales_phage	7.3e-78	100.0
WP_000346033.1\|1891647_1891854_-	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
WP_000184131.1\|1891855_1892809_-	hypothetical protein	A0A0N7E0U6	Staphylococcus_phage	6.6e-177	99.4
WP_000177426.1\|1892777_1894202_-\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
WP_001037584.1\|1894198_1895422_-\|terminase	PBSX family phage terminase large subunit	A0A0H3U2R6	Staphylococcus_phage	6.4e-241	99.5
WP_000594088.1\|1895414_1895909_-\|terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
WP_025174416.1\|1896079_1896334_+	hypothetical protein	Q4ZB48	Staphylococcus_virus	1.1e-19	78.6
WP_000286968.1\|1896263_1896665_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_001826585.1\|1896665_1896839_-	transcriptional activator RinB	Q4ZA36	Staphylococcus_virus	5.4e-21	93.0
WP_001798107.1\|1896838_1897231_-	hypothetical protein	A7TWI1	Staphylococcus_phage	3.1e-64	98.5
WP_000483477.1\|1897214_1897451_-	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
WP_000195781.1\|1897475_1897712_-	DUF1381 domain-containing protein	M1T303	Staphylococcus_phage	5.3e-35	96.2
1897541:1897557	attL	NA	NA	NA	NA
WP_001209219.1\|1897728_1897902_-	hypothetical protein	S4SVD5	Staphylococcus_phage	3.6e-25	100.0
WP_000181819.1\|1897938_1898472_-	dUTP pyrophosphatase	A0A0H3U2T1	Staphylococcus_phage	1.6e-95	100.0
WP_000700108.1\|1898464_1898707_-	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
WP_001065103.1\|1898696_1898933_-	DUF1024 family protein	A0A0H3U313	Staphylococcus_phage	1.2e-34	98.7
WP_001793991.1\|1898925_1899297_-	hypothetical protein	A0ZS31	Staphylococcus_virus	3.6e-62	96.7
WP_001126836.1\|1899305_1899554_-	hypothetical protein	A0A2I6PDI0	Staphylococcus_phage	3.2e-43	100.0
WP_000029379.1\|1899554_1899914_-	hypothetical protein	Q8SDV7	Staphylococcus_phage	3.8e-61	98.3
WP_000772916.1\|1899925_1900183_-	helix-turn-helix transcriptional regulator	Q4ZBU1	Staphylococcus_virus	4.1e-41	100.0
WP_001187263.1\|1900183_1900369_-	DUF3113 family protein	Q8SDV9	Staphylococcus_phage	2.4e-27	100.0
WP_000049812.1\|1900378_1900783_-	DUF1064 domain-containing protein	A0A059T5A5	Staphylococcus_phage	3.5e-71	97.0
WP_001123688.1\|1900793_1901015_-	DUF3269 family protein	Q9G021	Staphylococcus_phage	1.3e-35	100.0
WP_000803056.1\|1901182_1901962_-	ATP-binding protein	Q9G022	Staphylococcus_virus	2.4e-145	100.0
WP_000139436.1\|1901972_1902716_-	alpha/beta hydrolase	A0A2I6PDA9	Staphylococcus_phage	2.5e-115	99.6
WP_000240900.1\|1902708_1903473_-	AP2 domain-containing protein	A0A2I6PDA5	Staphylococcus_phage	5.0e-143	98.4
WP_001121805.1\|1903472_1904141_-	hypothetical protein	Q4ZD97	Staphylococcus_virus	1.1e-125	98.2
WP_000934782.1\|1904154_1904583_-	single-stranded DNA-binding protein	A0A0E3XC62	Staphylococcus_phage	1.7e-63	90.8
WP_000139720.1\|1904582_1905206_-	DUF1071 domain-containing protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
WP_001077280.1\|1905198_1905420_-	DUF2483 family protein	A0A0E3TAJ7	Staphylococcus_phage	2.4e-34	100.0
WP_000291090.1\|1905429_1905690_-	DUF1108 family protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
WP_000066011.1\|1905786_1905948_-	DUF1270 domain-containing protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
WP_000594789.1\|1905940_1906162_-	hypothetical protein	B2ZYU8	Staphylococcus_phage	8.7e-32	100.0
WP_000395455.1\|1906232_1906463_+	hypothetical protein	C8CGY3	Staphylococcus_phage	2.3e-35	100.0
WP_001148589.1\|1906638_1907379_-	antirepressor	A0A1W6JPN2	Staphylococcus_phage	6.3e-135	100.0
WP_000933365.1\|1907380_1907566_-	helix-turn-helix transcriptional regulator	A0A0H4IP57	Staphylococcus_phage	1.3e-25	100.0
WP_000394410.1\|1908011_1908494_+	hypothetical protein	A0A0N9BAX2	Staphylococcus_phage	1.1e-82	100.0
WP_000438352.1\|1908594_1908774_-	hypothetical protein	A0A0N9BAV3	Staphylococcus_phage	1.7e-25	100.0
WP_103263741.1\|1908792_1909023_-	helix-turn-helix domain-containing protein	A0A0N9BAY2	Staphylococcus_phage	9.1e-32	90.7
WP_000333630.1\|1909174_1909489_+	helix-turn-helix transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
WP_000525004.1\|1909501_1909963_+	hypothetical protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
WP_000392183.1\|1910146_1911079_+	hypothetical protein	A0EX19	Staphylococcus_virus	6.7e-174	100.0
WP_000337827.1\|1911058_1911238_-	hypothetical protein	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
WP_001145722.1\|1911350_1912397_+\|integrase	site-specific integrase	Q4ZB10	Staphylococcus_virus	5.5e-201	100.0
1916438:1916454	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1936355 : 2030116

112

Staphylococcus_phage(85.71%)

tRNA,transposase,head,holin,capsid,protease,portal,terminase,integrase,tail

attL 1995742:1995759|attR 2021314:2021331

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000170162.1\|1936355_1936658_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957019.1\|1937024_1938563_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831695.1\|1938651_1939851_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774563.1\|1939863_1941867_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	7.5e-114	36.1
WP_000992924.1\|1941870_1944063_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272062.1\|1944059_1944752_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|1944923_1945226_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|1945334_1946630_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827739.1\|1947476_1948643_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434537.1\|1948673_1949000_+	staphostatin A	NA	NA	NA	NA
WP_000669865.1\|1949290_1949464_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|1949444_1950047_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000164017.1\|1950317_1951139_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	4.4e-68	52.7
WP_000284429.1\|1951131_1952601_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.5e-106	44.3
WP_000898869.1\|1952784_1953861_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177820.1\|1953880_1954675_+	prephenate dehydratase	NA	NA	NA	NA
WP_031785526.1\|1954746_1954854_+	hypothetical protein	NA	NA	NA	NA
WP_000323161.1\|1954864_1956427_-	SLC13 family permease	NA	NA	NA	NA
WP_149558578.1\|1956631_1957729_-	pectate lyase	U5PWM6	Bacillus_phage	2.8e-46	34.3
WP_000149686.1\|1958100_1958661_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|1958713_1959643_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_001790680.1\|1959835_1960009_-	hypothetical protein	NA	NA	NA	NA
WP_001021226.1\|1960060_1961440_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181320.1\|1961559_1962588_-	lactonase family protein	NA	NA	NA	NA
WP_000205103.1\|1962857_1963259_+	YolD-like family protein	U3PG23	Staphylococcus_phage	1.3e-22	42.9
WP_000267034.1\|1963315_1963489_-	hypothetical protein	NA	NA	NA	NA
WP_001188080.1\|1963939_1964980_+	choloylglycine hydrolase	NA	NA	NA	NA
WP_000713063.1\|1965036_1965879_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033966.1\|1965875_1966433_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966286.1\|1966492_1967017_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|1967137_1967701_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221648.1\|1967766_1968507_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|1968506_1969379_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645721.1\|1969375_1970056_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991300.1\|1970056_1970953_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|1970949_1971330_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681966.1\|1971587_1971764_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|1972005_1972104_-	hypothetical protein	NA	NA	NA	NA
WP_001068518.1\|1972303_1973590_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_000669710.1\|1973860_1975930_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669789.1\|1976887_1977067_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
WP_001795394.1\|1977090_1977399_+	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
WP_001791826.1\|1977377_1977638_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000702263.1\|1977690_1978041_-	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_000727649.1\|1978724_1979174_+	chemotaxis-inhibiting protein CHIPS	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
WP_020444758.1\|1979268_1979727_-	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
WP_000919350.1\|1980253_1980745_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
WP_000861038.1\|1980935_1981691_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|1981702_1981957_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|1982008_1982116_+	hypothetical protein	NA	NA	NA	NA
WP_011447039.1\|1982168_1982345_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_000539688.1\|1982494_1982791_-	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
WP_001040261.1\|1982848_1983136_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
WP_001153681.1\|1983182_1983335_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
WP_000582165.1\|1983324_1987110_-	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.5
WP_000567408.1\|1987125_1988610_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
WP_001796452.1\|1988606_1993136_-\|tail	phage tail tape measure protein	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.8
WP_001096355.1\|1993380_1993731_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_071621395.1\|1993780_1994005_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
WP_000268733.1\|1994046_1994691_-\|tail	phage tail protein	A0A1X9H0J2	Staphylococcus_phage	1.5e-119	100.0
WP_000565498.1\|1994691_1995099_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000114227.1\|1995095_1995500_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	2.1e-68	99.3
WP_094969815.1\|1995496_1995859_-\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	1.7e-64	99.2
1995742:1995759	attL	NA	NA	NA	NA
WP_000150936.1\|1995842_1996127_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000238237.1\|1996139_1996400_-	hypothetical protein	A0A0H3U504	Staphylococcus_phage	6.4e-42	100.0
WP_000154559.1\|1996419_1997565_-\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
WP_000642728.1\|1997588_1998326_-\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
WP_000025274.1\|1998309_1999497_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_000625088.1\|1999512_2001174_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000402904.1\|2001170_2001515_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
WP_000988336.1\|2001645_2001945_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
WP_000590122.1\|2002176_2002593_-	hypothetical protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
WP_001622114.1\|2002620_2002821_-	DUF1514 family protein	A0A2I6PDV9	Staphylococcus_phage	4.0e-28	98.5
WP_000595265.1\|2002820_2002970_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000592207.1\|2002966_2003353_-	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
WP_000195803.1\|2003349_2003556_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
WP_001282074.1\|2003552_2003798_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
WP_149558570.1\|2004034_2005163_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	54.0
WP_001065097.1\|2005746_2006001_-	DUF1024 family protein	A0A0H3U469	Staphylococcus_phage	5.0e-39	100.0
WP_000131370.1\|2006015_2006258_-	hypothetical protein	Q4ZDP7	Staphylococcus_virus	2.1e-39	95.0
WP_000101288.1\|2006261_2006630_-	hypothetical protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
WP_000401960.1\|2006642_2007047_-	RusA family crossover junction endodeoxyribonuclease	A0EWX6	Staphylococcus_phage	1.9e-72	100.0
WP_000338530.1\|2007055_2007274_-	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
WP_000610648.1\|2008204_2008675_-	single-stranded DNA-binding protein	A0EWX3	Staphylococcus_phage	1.3e-80	98.7
WP_073394849.1\|2008675_2009293_-	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	9.1e-87	100.0
WP_000138475.1\|2009373_2010294_-	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_000700555.1\|2010295_2012239_-	AAA family ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
WP_001205732.1\|2012247_2012511_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291510.1\|2012519_2012780_-	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
WP_000165371.1\|2012784_2013087_-	DUF2482 family protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
WP_000048129.1\|2013181_2013343_-	DUF1270 family protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
WP_001120201.1\|2013339_2013663_-	DUF771 domain-containing protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
WP_000762519.1\|2013717_2014098_+	DUF2513 domain-containing protein	Q9T1Z5	Staphylococcus_phage	3.4e-68	99.2
WP_001148862.1\|2014084_2014282_-	hypothetical protein	O80075	Staphylococcus_phage	3.5e-24	87.7
WP_001148605.1\|2014297_2015050_-	oxidoreductase	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
WP_000128907.1\|2015100_2015430_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
WP_001025404.1\|2015418_2015634_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
WP_000854074.1\|2015630_2015912_-	helix-turn-helix transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	4.6e-38	96.5
WP_001801500.1\|2015908_2016082_-	hypothetical protein	NA	NA	NA	NA
WP_001031454.1\|2016044_2016758_+	helix-turn-helix transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
WP_000759682.1\|2016773_2017706_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
WP_000591749.1\|2017711_2018053_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
WP_000705248.1\|2018256_2018439_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
WP_000825947.1\|2018538_2019003_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
WP_000857191.1\|2019061_2020099_+\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
WP_000595616.1\|2021236_2022256_-	beta-channel forming cytolysin	A0A2I6PEU3	Staphylococcus_phage	2.6e-54	39.8
2021314:2021331	attR	NA	NA	NA	NA
WP_000791399.1\|2022277_2023333_-	succinyl-diaminopimelate desuccinylase	A0A2I6PER8	Staphylococcus_phage	6.0e-38	34.6
WP_149558579.1\|2023763_2024987_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_001045070.1\|2025382_2026690_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000240642.1\|2027221_2028838_-	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_000917289.1\|2028913_2029198_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000197627.1\|2029372_2030116_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031887

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP031886

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection