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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP034725 Pseudomonas brassicacearum strain 3Re2-7 chromosome, complete genome 4 crisprs DEDDh,DinG,csa3,cas3,RT,WYL 1 0 7 0

Results visualization

1. NZ_CP034725
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034725_1 639846-639941 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034725_2 1217247-1217379 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034725_3 3478936-3479031 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP034725_4 3813545-3813639 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP034725_2 2.1|1217292|43|NZ_CP034725|CRISPRCasFinder 1217292-1217334 43 NZ_CP034725.1 1035090-1035132 1 0.977
NZ_CP034725_2 2.1|1217292|43|NZ_CP034725|CRISPRCasFinder 1217292-1217334 43 NZ_CP034725.1 6280754-6280796 2 0.953

1. spacer 2.1|1217292|43|NZ_CP034725|CRISPRCasFinder matches to position: 1035090-1035132, mismatch: 1, identity: 0.977

gttctcccggtcgtacacccatcagatctgtttgagcaggacc	CRISPR spacer
gttctcctggtcgtacacccatcagatctgtttgagcaggacc	Protospacer
*******.***********************************

2. spacer 2.1|1217292|43|NZ_CP034725|CRISPRCasFinder matches to position: 6280754-6280796, mismatch: 2, identity: 0.953

gttctcccggtcgtacacccatcagatctgtttgagcaggacc	CRISPR spacer
gttctcccggtcgtacatcaatcagatctgtttgagcaggacc	Protospacer
*****************.* ***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1274618 : 1352842 77 Pseudomonas_phage(65.22%) protease,holin,bacteriocin,plate,tRNA,tail NA
DBSCAN-SWA_2 4214700 : 4220966 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_3 4384003 : 4393404 15 Pseudomonas_phage(37.5%) integrase attL 4377887:4377901|attR 4393645:4393659
DBSCAN-SWA_4 4498103 : 4563605 84 Pseudomonas_phage(47.17%) terminase,integrase,head,transposase,tail attL 4509277:4509336|attR 4563652:4563763
DBSCAN-SWA_5 4926510 : 4993555 74 uncultured_Caudovirales_phage(38.46%) lysis,holin,terminase,integrase,plate,head,transposase,tail,capsid,portal attL 4937409:4937436|attR 4994625:4994652
DBSCAN-SWA_6 6206093 : 6257589 44 Burkholderia_phage(33.33%) holin,protease NA
DBSCAN-SWA_7 6603160 : 6681889 54 uncultured_Caudovirales_phage(22.22%) plate,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage