CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP042980	Shigella flexneri Y strain PE577 chromosome, complete genome	5 crisprs	DinG,cas3,DEDDh,c2c9_V-U4,csa3,RT	2	16
NZ_CP042978	Shigella flexneri Y strain PE577 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP042979	Shigella flexneri Y strain PE577 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042980_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042980_1

64028-64143

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042980_1

>merge|NZ_CP042980|1|64028-64143|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP042980|1|1|64028-64143|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042980.1\|WP_005090818.1\|67714_68593_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP042980.1\|WP_000963947.1\|64162_65665_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP042980.1\|WP_000916288.1\|69556_70255_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP042980.1\|WP_001200573.1\|56167_56983_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP042980.1\|WP_001117023.1\|57770_60677_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP042980.1\|WP_000637838.1\|74948_76127_+\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP042980.1\|WP_005053586.1\|72971_74627_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP042980.1\|WP_000746145.1\|53558_55913_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP042980.1\|WP_001148403.1\|68678_69443_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP042980.1\|WP_000035612.1\|60841_63193_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP042980.1\|WP_000610901.1\|50032_50410_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP042980.1\|WP_001248770.1\|74715_74847_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP042980.1\|WP_000235706.1\|70238_71849_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP042980.1\|WP_000800457.1\|52219_53506_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP042980.1\|WP_000525170.1\|57099_57759_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP042980.1\|WP_005053588.1\|71824_72808_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP042980.1\|WP_000910215.1\|63267_63963_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP042980.1\|WP_000241261.1\|51230_52220_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP042980.1\|WP_000951772.1\|65675_67376_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP042980.1\|WP_001065372.1\|50412_51234_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708

Protein	Function_ID	Function_description	E-value
NZ_CP042980.1\|WP_005090818.1\|67714_68593_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP042980.1\|WP_000963947.1\|64162_65665_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP042980.1\|WP_000916288.1\|69556_70255_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	7.93437e-165
NZ_CP042980.1\|WP_001200573.1\|56167_56983_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP042980.1\|WP_001117023.1\|57770_60677_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP042980.1\|WP_000637838.1\|74948_76127_+\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.70218e-179
NZ_CP042980.1\|WP_005053586.1\|72971_74627_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP042980.1\|WP_000746145.1\|53558_55913_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP042980.1\|WP_001148403.1\|68678_69443_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.87417e-49
NZ_CP042980.1\|WP_000035612.1\|60841_63193_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP042980.1\|WP_000610901.1\|50032_50410_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP042980.1\|WP_001248770.1\|74715_74847_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP042980.1\|WP_000235706.1\|70238_71849_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP042980.1\|WP_000800457.1\|52219_53506_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP042980.1\|WP_000525170.1\|57099_57759_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	6.79869e-160
NZ_CP042980.1\|WP_005053588.1\|71824_72808_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP042980.1\|WP_000910215.1\|63267_63963_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	2.636e-179
NZ_CP042980.1\|WP_000241261.1\|51230_52220_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP042980.1\|WP_000951772.1\|65675_67376_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP042980.1\|WP_001065372.1\|50412_51234_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.53757e-148

>NZ_CP042980.1|WP_000910215.1|63267_63963_-|L-ribulose-5-phosphate-4-epimerase
MLKDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP042980.1|WP_000035612.1|60841_63193_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIHADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPLLLEKLNAWFANHDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDKAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDIIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP042980.1|WP_001117023.1|57770_60677_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP042980.1|WP_000525170.1|57099_57759_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCFETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP042980.1|WP_001200573.1|56167_56983_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP042980.1|WP_000746145.1|53558_55913_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP042980.1|WP_000800457.1|52219_53506_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP042980.1|WP_000241261.1|51230_52220_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDASIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP042980.1|WP_001065372.1|50412_51234_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP042980.1|WP_000610901.1|50032_50410_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP042980.1|WP_000963947.1|64162_65665_-|L-arabinose-isomerase
MAIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPYKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGYLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLPVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP042980.1|WP_000951772.1|65675_67376_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDTPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL
>NZ_CP042980.1|WP_005090818.1|67714_68593_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAYLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGCHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPYFSDLFGQIINAGQGEGRYSELLAMNLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP042980.1|WP_001148403.1|68678_69443_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV
>NZ_CP042980.1|WP_000916288.1|69556_70255_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELLSGKASASAILGITG
>NZ_CP042980.1|WP_000235706.1|70238_71849_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP042980.1|WP_005053588.1|71824_72808_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEANCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP042980.1|WP_005053586.1|72971_74627_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHITDIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPCEWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEKKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP042980.1|WP_001248770.1|74715_74847_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP042980.1|WP_000637838.1|74948_76127_+|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLLSVARVELPSENALSMQGDWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSDLGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVVAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNTISTGVILAGVIQGAIAQSWGHFAVYWVIAIISVVALFLTAKVKDV

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Crispr_ID: NZ_CP042980_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042980_2

845761-845909

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP042980_2

>merge|NZ_CP042980|2|845761-845909|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAATCGACGGGGTGCGGTAAAACCTTTGCGAACGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGC

>NZ_CP042980|2|2|845761-845909|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAT	CGACGGGGTGCGGTAAAACCTTTGCGAACGC
GTTCACTGCCGTACAGGCAGCTTAGAAAT	TCACAGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGACAGATAAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042980.1\|WP_000410785.1\|842374_842599_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP042980.1\|WP_001040187.1\|846292_846511_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP042980.1\|WP_000537402.1\|851152_852118_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP042980.1\|WP_001241678.1\|846795_847500_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP042980.1\|WP_000188161.1\|840355_842302_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP042980.1\|WP_001295343.1\|857473_858085_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP042980.1\|WP_000886683.1\|859529_860822_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP042980.1\|WP_000934033.1\|843272_845549_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP042980.1\|WP_000067746.1\|858095_859439_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP042980.1\|WP_000520781.1\|842921_843242_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP042980.1\|WP_000228473.1\|852661_853156_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP042980.1\|WP_000599806.1\|836481_838140_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP042980.1\|WP_000077083.1\|853290_857319_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP042980.1\|WP_001043574.1\|849263_851030_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP042980.1\|WP_094085506.1\|832916_834190_-\|IS3-like-element-IS2-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP042980.1\|WP_001202220.1\|847541_849263_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP042980.1\|WP_047343235.1\|839243_840359_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP042980.1\|WP_005048376.1\|831893_832793_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP042980.1\|WP_005067329.1\|838136_839093_-\|VirK/YbjX-family-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP042980.1\|WP_001298299.1\|834585_835281_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453

Protein	Function_ID	Function_description	E-value
NZ_CP042980.1\|WP_000410785.1\|842374_842599_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP042980.1\|WP_001040187.1\|846292_846511_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP042980.1\|WP_000537402.1\|851152_852118_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP042980.1\|WP_001241678.1\|846795_847500_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
NZ_CP042980.1\|WP_000188161.1\|840355_842302_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP042980.1\|WP_001295343.1\|857473_858085_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP042980.1\|WP_000886683.1\|859529_860822_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP042980.1\|WP_000934033.1\|843272_845549_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP042980.1\|WP_000067746.1\|858095_859439_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP042980.1\|WP_000520781.1\|842921_843242_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP042980.1\|WP_000228473.1\|852661_853156_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP042980.1\|WP_000599806.1\|836481_838140_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP042980.1\|WP_000077083.1\|853290_857319_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP042980.1\|WP_001043574.1\|849263_851030_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042980.1\|WP_094085506.1\|832916_834190_-\|IS3-like-element-IS2-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	0
NZ_CP042980.1\|WP_001202220.1\|847541_849263_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP042980.1\|WP_047343235.1\|839243_840359_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP042980.1\|WP_005048376.1\|831893_832793_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.47299e-118
NZ_CP042980.1\|WP_005067329.1\|838136_839093_-\|VirK/YbjX-family-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	5.24558e-131
NZ_CP042980.1\|WP_001298299.1\|834585_835281_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144

>NZ_CP042980.1|WP_000934033.1|843272_845549_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKKLSDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP042980.1|WP_000520781.1|842921_843242_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP042980.1|WP_000410785.1|842374_842599_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP042980.1|WP_000188161.1|840355_842302_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLNIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDIATLDADALAQLRREHFGFIFQRYHLLPHLTVEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTATGILFGWLPARNAARLDPVDALARE
>NZ_CP042980.1|WP_047343235.1|839243_840359_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSLQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNCYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP042980.1|WP_005067329.1|838136_839093_-|VirK/YbjX-family-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRCSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP042980.1|WP_000599806.1|836481_838140_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP042980.1|WP_001298299.1|834585_835281_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP042980.1|WP_094085506.1|832916_834190_-|IS3-like-element-IS2-family-transposase
MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
>NZ_CP042980.1|WP_005048376.1|831893_832793_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQQAALKAINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP042980.1|WP_001040187.1|846292_846511_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP042980.1|WP_001241678.1|846795_847500_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP042980.1|WP_001202220.1|847541_849263_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGSVMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARTLLHDAPLVLLDEPTEGLDATTESQILELLAKMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP042980.1|WP_001043574.1|849263_851030_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAAKLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP042980.1|WP_000537402.1|851152_852118_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMARMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP042980.1|WP_000228473.1|852661_853156_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP042980.1|WP_000077083.1|853290_857319_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNSAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQQVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP042980.1|WP_001295343.1|857473_858085_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP042980.1|WP_000067746.1|858095_859439_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVYDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP042980.1|WP_000886683.1|859529_860822_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NZ_CP042980_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042980_3

1602564-1602672

Orphan

Consensus_repeat	Method
AGGAATTAAGGAAGTAAATATAAAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042980_3

>merge|NZ_CP042980|3|1602564-1602672|CRISPRCasFinder
AGGAATTAAGGAAGTAAATATAAAGAGGGGGACCGGATGTGACTCACAGGTTGAACCGAATGTCAAGGACTAAAGACGCCTCAGGAATTAAGGAAGTATATATAAAGAG

>NZ_CP042980|3|3|1602564-1602672|CRISPRCasFinder
AGGAATTAAGGAAGTAAATATAAAGAG	GGGGACCGGATGTGACTCACAGGTTGAACCGAATGTCAAGGACTAAAGACGCCTC
AGGAATTAAGGAAGTATATATAAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042980.1\|WP_005091980.1\|1596608_1596929_+\|dimethylsulfoxide-reductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP042980.1\|WP_000919213.1\|1612492_1613188_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|237083
NZ_CP042980.1\|WP_071829158.1\|1611247_1612540_+\|voltage-gated-ClC-type-chloride-channel-ClcB	unknown	unknown	gnl\|CDD\|234963
NZ_CP042980.1\|WP_000199921.1\|1600626_1601127_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_000207512.1\|1598740_1599730_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_087880099.1\|1603481_1604650_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP042980.1\|WP_001019539.1\|1614667_1615579_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP042980.1\|WP_000113584.1\|1602062_1602431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_001321287.1\|1595286_1595997_-\|YnfC-family-lipoprotein	unknown	unknown	gnl\|CDD\|179506
NZ_CP042980.1\|WP_000148710.1\|1610474_1611089_+\|Tat-proofreading-chaperone-DmsD	unknown	unknown	gnl\|CDD\|236938
NZ_CP042980.1\|WP_024194789.1\|1600416_1600614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_000091824.1\|1615685_1616495_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP042980.1\|WP_001091025.1\|1601116_1601632_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_000213020.1\|1608958_1609576_+\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP042980.1\|WP_005050191.1\|1596104_1596410_+\|DUF1161-domain-containing-protein	unknown	unknown	gnl\|CDD\|369019
NZ_CP042980.1\|WP_000971490.1\|1599814_1600306_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_000225287.1\|1613312_1614533_-\|DNA-binding-transcriptional-repressor-Mlc	unknown	unknown	gnl\|CDD\|224851
NZ_CP042980.1\|WP_024259245.1\|1605739_1606849_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP042980.1\|WP_000526473.1\|1609577_1610432_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP042980.1\|WP_000705197.1\|1594347_1594689_+\|DUF1283-family-protein	unknown	unknown	gnl\|CDD\|184216

Protein	Function_ID	Function_description	E-value
NZ_CP042980.1\|WP_005091980.1\|1596608_1596929_+\|dimethylsulfoxide-reductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	9.34603e-36
NZ_CP042980.1\|WP_000919213.1\|1612492_1613188_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|237083	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD.	4.97611e-168
NZ_CP042980.1\|WP_071829158.1\|1611247_1612540_+\|voltage-gated-ClC-type-chloride-channel-ClcB	gnl\|CDD\|234963	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional.	0
NZ_CP042980.1\|WP_000526473.1\|1609577_1610432_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	8.60619e-118
NZ_CP042980.1\|WP_024259245.1\|1605739_1606849_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP042980.1\|WP_001321287.1\|1595286_1595997_-\|YnfC-family-lipoprotein	gnl\|CDD\|179506	PRK02939, PRK02939, YnfC family lipoprotein.	1.99478e-153
NZ_CP042980.1\|WP_000148710.1\|1610474_1611089_+\|Tat-proofreading-chaperone-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	3.07385e-121
NZ_CP042980.1\|WP_000091824.1\|1615685_1616495_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.87001e-53
NZ_CP042980.1\|WP_000705197.1\|1594347_1594689_+\|DUF1283-family-protein	gnl\|CDD\|184216	PRK13659, PRK13659, DUF1283 family protein.	1.05862e-62
NZ_CP042980.1\|WP_000213020.1\|1608958_1609576_+\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	7.22006e-97
NZ_CP042980.1\|WP_005050191.1\|1596104_1596410_+\|DUF1161-domain-containing-protein	gnl\|CDD\|369019	pfam06649, DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.	1.69361e-23
NZ_CP042980.1\|WP_087880099.1\|1603481_1604650_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.92413e-152
NZ_CP042980.1\|WP_000225287.1\|1613312_1614533_-\|DNA-binding-transcriptional-repressor-Mlc	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.90513e-65
NZ_CP042980.1\|WP_001019539.1\|1614667_1615579_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	9.67247e-63

>NZ_CP042980.1|WP_000113584.1|1602062_1602431_-|hypothetical-protein
MARPIATHDNTFTKAYLQQHCGDLLSFDGQGDLSGWLDDVLTGAGRLNESMASNTKPVSPYLILTQLLTHDTLTVSAVQESLSRKRVALGEPMVSTRYARYVYATVVSASKSVQYHASKAGS
>NZ_CP042980.1|WP_001091025.1|1601116_1601632_-|hypothetical-protein
MNTELPVTNRQFLIILLTNAESSVDCCRYNLDLLKLSRWYAQAEDWDYEKIREMYAEPIQSYLQTHTEEELKRGLQDIFYFNNPYTCEGDSEEMDWIASRSDADLKHISNAMMQVESKWSRRLQVLTEDYENGTFDKLVPPDAERLQAKADQEQRFKSFDEALAGGASYDF
>NZ_CP042980.1|WP_000199921.1|1600626_1601127_-|hypothetical-protein
MTSDNKQEYTIHIFGQDITSQDGLFRLDEIRRVGIQIGKVEDNRSTEVARFMRTKAGRSLTNPENGFVKKINMGHLGTSWLADPVAAIEFGRWLDLGYGLAVTRAFVSMTSSATVQSAVASAEDIKPETKEFIQRHGTGLYIAGREVSQAEYSDYQAVTAGRCEWR
>NZ_CP042980.1|WP_024194789.1|1600416_1600614_-|hypothetical-protein
MIDPRTPIGKATLRYRGLPTRHLLSLLRLGVEDPERPYYSRDELIAMLVDRDLDNQLRRAFAKQS
>NZ_CP042980.1|WP_000971490.1|1599814_1600306_-|hypothetical-protein
MMFNNNNWKLSVTDINLYENTVSLDGQPYPLSLAIKTLIPGYLSGLPSTSREAMELLEALAEAGVTIGNFFSNDLMTAYGRRQMNKRAEAERIAKEQRLQAERMREENMTDAEWQKELQRREQVKAERRTYGESLRSATHSAGRSRAAIVADLESGGNWMDSL
>NZ_CP042980.1|WP_000207512.1|1598740_1599730_-|hypothetical-protein
MTTIKDAFQFGIEPVRITDTDNIQVNEGLPTNADPQVYALQLAKTVKAMLNGVLKDAQENIPFPVEVLPTRNSLPTPIIAHTLADRSVVVPVRGGKRPEVVTVPSGQEIVVEPIEQAILISEQTKLWDAKSSTGFTQGTLQQDAMNICENVVRTINARMVDVLESSKLLKTVELPVLTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESQLKALSRLAAKQGFSGEDAIVDMLGTDIAYYNGEDKGVFMLAKRFTALSFGCFRHDGENITVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLKFTKTEA
>NZ_CP042980.1|WP_005091980.1|1596608_1596929_+|dimethylsulfoxide-reductase
MSKNDRMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRSAAAAVQQASEKVIWGSCSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQGTRLFARSLHPPAY
>NZ_CP042980.1|WP_005050191.1|1596104_1596410_+|DUF1161-domain-containing-protein
MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPESSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYNRTTSGNVSAPAQSTQDGAPAEPQ
>NZ_CP042980.1|WP_001321287.1|1595286_1595997_-|YnfC-family-lipoprotein
MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYTIKNTIDYY
>NZ_CP042980.1|WP_000705197.1|1594347_1594689_+|DUF1283-family-protein
MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSRQHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP
>NZ_CP042980.1|WP_087880099.1|1603481_1604650_-|IS3-family-transposase
MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
>NZ_CP042980.1|WP_024259245.1|1605739_1606849_+|molybdopterin-dependent-oxidoreductase
MINVSHIRTLSSIESTTSSPSIRLAMESIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLEDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTPSGKIEIYSSKLAEIARTWELEKDEVISPLPVYASTFEGWDSPERRTFPLQLFGFHYKSRTHSTYGNIDVLKAACRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQGAWHEPNMSGDKIDHGGCVNTLTTLRPSPLAKGNPQHTNLVEIEKI
>NZ_CP042980.1|WP_000213020.1|1608958_1609576_+|dimethylsulfoxide-reductase-subunit-B
MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAGGDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQKHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV
>NZ_CP042980.1|WP_000526473.1|1609577_1610432_+|dimethyl-sulfoxide-reductase-anchor-subunit
MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQHIVRGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWLVAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLSGPILAAAILRAARVTFNTTPFAIISVLALIACAEVIVLQGLSLASIHSSVQQASALVPDYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLVLGLILILVGEMIGRVLFYGLHMTVGMAIAG
>NZ_CP042980.1|WP_000148710.1|1610474_1611089_+|Tat-proofreading-chaperone-DmsD
MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWSTRFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR
>NZ_CP042980.1|WP_071829158.1|1611247_1612540_+|voltage-gated-ClC-type-chloride-channel-ClcB
MHHLHIYPDLRTMFRRLLIATVVGILAVFAVAGFRHAMLLLEWLFLNNDSGSLVNAATNLSSWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAIVAWLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS
>NZ_CP042980.1|WP_000919213.1|1612492_1613188_-|ATP-dependent-dethiobiotin-synthetase-BioD
MLKRFFITGTDTSVGKTVVSRALLQALASQGKRVAGYKPVAKGSKETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAMLRSVLAVDRVTV
>NZ_CP042980.1|WP_000225287.1|1613312_1614533_-|DNA-binding-transcriptional-repressor-Mlc
MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVRELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGVGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIIGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG
>NZ_CP042980.1|WP_001019539.1|1614667_1615579_-|LysR-family-transcriptional-regulator
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEHAVIVHEPLMAMIPYDHPLANNPSVTLAELAELAELAKEPFVFFDPHVGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR
>NZ_CP042980.1|WP_000091824.1|1615685_1616495_+|MFS-transporter
MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFCPTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSP

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Crispr_ID: NZ_CP042980_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042980_4

2340474-2340600

Orphan

Consensus_repeat	Method
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042980_4

>merge|NZ_CP042980|4|2340474-2340600|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

>NZ_CP042980|4|4|2340474-2340600|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	TCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGA
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042980.1\|WP_094081528.1\|2335993_2337267_+\|IS3-like-element-IS2-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP042980.1\|WP_000990752.1\|2331525_2332248_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP042980.1\|WP_000135039.1\|2341786_2342041_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP042980.1\|WP_001104543.1\|2318853_2320503_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP042980.1\|WP_000140529.1\|2350176_2351127_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP042980.1\|WP_001000362.1\|2348793_2349984_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP042980.1\|WP_072075176.1\|2332375_2334310_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP042980.1\|WP_001281242.1\|2328751_2331379_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP042980.1\|WP_000332036.1\|2340656_2341787_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP042980.1\|WP_001209897.1\|2347537_2348797_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP042980.1\|WP_000747032.1\|2322777_2323946_-\|IS3-like-element-IS911-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP042980.1\|WP_000070369.1\|2351167_2351638_-\|aldolase	unknown	unknown	gnl\|CDD\|182257
NZ_CP042980.1\|WP_005098978.1\|2334319_2335975_-\|AidA-family-protein	unknown	unknown	gnl\|CDD\|182059
NZ_CP042980.1\|WP_000768975.1\|2343207_2344284_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP042980.1\|WP_000948723.1\|2344288_2345647_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP042980.1\|WP_001215763.1\|2326294_2326918_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP042980.1\|WP_000857257.1\|2345919_2347548_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP042980.1\|WP_005046836.1\|2321066_2321225_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP042980.1\|WP_001075180.1\|2338137_2340423_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP042980.1\|WP_000301054.1\|2342094_2342745_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136

Protein	Function_ID	Function_description	E-value
NZ_CP042980.1\|WP_094081528.1\|2335993_2337267_+\|IS3-like-element-IS2-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	0
NZ_CP042980.1\|WP_000990752.1\|2331525_2332248_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.1156e-171
NZ_CP042980.1\|WP_000135039.1\|2341786_2342041_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.23742e-52
NZ_CP042980.1\|WP_001104543.1\|2318853_2320503_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.71163e-127
NZ_CP042980.1\|WP_000140529.1\|2350176_2351127_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP042980.1\|WP_001000362.1\|2348793_2349984_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP042980.1\|WP_072075176.1\|2332375_2334310_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP042980.1\|WP_001281242.1\|2328751_2331379_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP042980.1\|WP_000332036.1\|2340656_2341787_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP042980.1\|WP_001209897.1\|2347537_2348797_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP042980.1\|WP_000747032.1\|2322777_2323946_-\|IS3-like-element-IS911-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.76294e-152
NZ_CP042980.1\|WP_000070369.1\|2351167_2351638_-\|aldolase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	3.62332e-109
NZ_CP042980.1\|WP_005098978.1\|2334319_2335975_-\|AidA-family-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP042980.1\|WP_000768975.1\|2343207_2344284_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP042980.1\|WP_000948723.1\|2344288_2345647_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP042980.1\|WP_001215763.1\|2326294_2326918_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	2.24238e-138
NZ_CP042980.1\|WP_000857257.1\|2345919_2347548_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP042980.1\|WP_005046836.1\|2321066_2321225_-\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	6.0899e-06
NZ_CP042980.1\|WP_001075180.1\|2338137_2340423_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP042980.1\|WP_000301054.1\|2342094_2342745_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.98056e-158

>NZ_CP042980.1|WP_001075180.1|2338137_2340423_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP042980.1|WP_094081528.1|2335993_2337267_+|IS3-like-element-IS2-family-transposase
MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
>NZ_CP042980.1|WP_005098978.1|2334319_2335975_-|AidA-family-protein
MSGDSGGQSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAINNIANDGKGGAIYTINNDVYLSDDVFNNNQVYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSTAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDK
>NZ_CP042980.1|WP_072075176.1|2332375_2334310_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTFTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLADVTVNGDLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPEPDPTPDPDPTPDPDPTPDPAPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGRYHYTAAGQLAQQEDTSTVQLSGGLFSGRWGTDGEWMLGAVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEHEDGVDRYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAVKLRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP042980.1|WP_000990752.1|2331525_2332248_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>NZ_CP042980.1|WP_001281242.1|2328751_2331379_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP042980.1|WP_001215763.1|2326294_2326918_-|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSRLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGSGKNGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP042980.1|WP_000747032.1|2322777_2323946_-|IS3-like-element-IS911-family-transposase
MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
>NZ_CP042980.1|WP_005046836.1|2321066_2321225_-|hypothetical-protein
MTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVG
>NZ_CP042980.1|WP_001104543.1|2318853_2320503_-|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPSVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQELIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP042980.1|WP_000332036.1|2340656_2341787_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_CP042980.1|WP_000135039.1|2341786_2342041_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_CP042980.1|WP_000301054.1|2342094_2342745_-|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP042980.1|WP_000768975.1|2343207_2344284_-|glycerophosphodiester-phosphodiesterase
MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP042980.1|WP_000948723.1|2344288_2345647_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_CP042980.1|WP_000857257.1|2345919_2347548_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP042980.1|WP_001209897.1|2347537_2348797_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRATWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP042980.1|WP_001000362.1|2348793_2349984_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP042980.1|WP_000140529.1|2350176_2351127_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFIFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRPMRYATAAMQSHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDHDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLVGLQQGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>NZ_CP042980.1|WP_000070369.1|2351167_2351638_-|aldolase
MSNPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY

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Crispr_ID: NZ_CP042980_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042980_5

3236922-3237023

Orphan

Consensus_repeat	Method
TACAAAACACAACAACATCAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042980_5

>merge|NZ_CP042980|5|3236922-3237023|CRISPRCasFinder
TACAAAACACAACAACATCAACAAATTAAACACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCATCAGGTACAAAACACAACAACATCAACAA

>NZ_CP042980|5|5|3236922-3237023|CRISPRCasFinder
TACAAAACACAACAACATCAACAA	ATTAAACACCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCATCAGG
TACAAAACACAACAACATCAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042980.1\|WP_000719990.1\|3241472_3241862_-\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP042980.1\|WP_000548347.1\|3246790_3247780_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP042980.1\|WP_000096082.1\|3232286_3232586_+\|YqjK-like-family-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP042980.1\|WP_000107721.1\|3245437_3246769_-\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP042980.1\|WP_000031415.1\|3231584_3231890_+\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP042980.1\|WP_000861753.1\|3241875_3244170_-\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP042980.1\|WP_000145836.1\|3249006_3249351_+\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP042980.1\|WP_000785722.1\|3231892_3232297_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP042980.1\|WP_005050947.1\|3234416_3234785_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP042980.1\|WP_000104211.1\|3247878_3248817_-\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP042980.1\|WP_000401579.1\|3238430_3239762_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP042980.1\|WP_000531201.1\|3233137_3234124_+\|glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
NZ_CP042980.1\|WP_000633582.1\|3235992_3236694_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP042980.1\|WP_005050939.1\|3236716_3236881_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042980.1\|WP_005050924.1\|3244203_3245412_-\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP042980.1\|WP_001041008.1\|3234991_3235888_-\|DNA-binding-transcriptional-regulator-YhaJ	unknown	unknown	gnl\|CDD\|176122
NZ_CP042980.1\|WP_001166768.1\|3230662_3231046_+\|EnvZ/OmpR-regulon-moderator-MzrA	unknown	unknown	gnl\|CDD\|236728
NZ_CP042980.1\|WP_000622110.1\|3240036_3241401_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP042980.1\|WP_005050953.1\|3232681_3233068_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP042980.1\|WP_149617758.1\|3237092_3238403_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	unknown	unknown	gnl\|CDD\|226206

Protein	Function_ID	Function_description	E-value
NZ_CP042980.1\|WP_000719990.1\|3241472_3241862_-\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
NZ_CP042980.1\|WP_000548347.1\|3246790_3247780_-\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP042980.1\|WP_000096082.1\|3232286_3232586_+\|YqjK-like-family-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	9.25437e-19
NZ_CP042980.1\|WP_000107721.1\|3245437_3246769_-\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP042980.1\|WP_000031415.1\|3231584_3231890_+\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP042980.1\|WP_000861753.1\|3241875_3244170_-\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP042980.1\|WP_000145836.1\|3249006_3249351_+\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	1.4676e-66
NZ_CP042980.1\|WP_000785722.1\|3231892_3232297_+\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP042980.1\|WP_005050947.1\|3234416_3234785_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	2.32064e-42
NZ_CP042980.1\|WP_000104211.1\|3247878_3248817_-\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP042980.1\|WP_000401579.1\|3238430_3239762_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.58965e-166
NZ_CP042980.1\|WP_000531201.1\|3233137_3234124_+\|glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP042980.1\|WP_000633582.1\|3235992_3236694_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.70011e-68
NZ_CP042980.1\|WP_001166768.1\|3230662_3231046_+\|EnvZ/OmpR-regulon-moderator-MzrA	gnl\|CDD\|236728	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA.	1.13391e-71
NZ_CP042980.1\|WP_005050924.1\|3244203_3245412_-\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP042980.1\|WP_001041008.1\|3234991_3235888_-\|DNA-binding-transcriptional-regulator-YhaJ	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.14774e-51
NZ_CP042980.1\|WP_000622110.1\|3240036_3241401_-\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP042980.1\|WP_005050953.1\|3232681_3233068_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	5.33333e-15
NZ_CP042980.1\|WP_149617758.1\|3237092_3238403_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0

>NZ_CP042980.1|WP_005050939.1|3236716_3236881_+|hypothetical-protein
MSKKSTKKRQPAKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP042980.1|WP_000633582.1|3235992_3236694_+|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDTCPQRENPLIQKLALNMDKQQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP042980.1|WP_001041008.1|3234991_3235888_-|DNA-binding-transcriptional-regulator-YhaJ
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFAGK
>NZ_CP042980.1|WP_005050947.1|3234416_3234785_+|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTIIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEQE
>NZ_CP042980.1|WP_000531201.1|3233137_3234124_+|glutathionyl-hydroquinone-reductase-YqjG
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP042980.1|WP_005050953.1|3232681_3233068_+|DoxX-family-protein
MILSIDSNDANSAPLHKKTISSLSGAVESMMKKLEDVGVLVAHILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIGRLLNKKW
>NZ_CP042980.1|WP_000096082.1|3232286_3232586_+|YqjK-like-family-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSRVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP042980.1|WP_000785722.1|3231892_3232297_+|phage-holin-family-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP042980.1|WP_000031415.1|3231584_3231890_+|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR
>NZ_CP042980.1|WP_001166768.1|3230662_3231046_+|EnvZ/OmpR-regulon-moderator-MzrA
MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQDNNSQAMQWLTRLRDNSHRFG
>NZ_CP042980.1|WP_149617758.1|3237092_3238403_-|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAEELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTHQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITAIMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP042980.1|WP_000401579.1|3238430_3239762_-|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTDMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSLFLAFS
>NZ_CP042980.1|WP_000622110.1|3240036_3241401_-|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPCRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>NZ_CP042980.1|WP_000719990.1|3241472_3241862_-|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP042980.1|WP_000861753.1|3241875_3244170_-|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKSEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP042980.1|WP_005050924.1|3244203_3245412_-|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSFGERIVSSENAHVICVVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP042980.1|WP_000107721.1|3245437_3246769_-|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTLSMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP042980.1|WP_000548347.1|3246790_3247780_-|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP042980.1|WP_000104211.1|3247878_3248817_-|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP042980.1|WP_000145836.1|3249006_3249351_+|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP042980_1	1.1\|64059\|54\|NZ_CP042980\|CRISPRCasFinder	64059-64112	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229131	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229232	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229285-229333	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239625	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239726	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239779-239827	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230537	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230638	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230691-230739	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211507	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211608	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211661-211709	9	0.816
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229434	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239928	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230840	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211810	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7490	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84314	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386556	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14244	10	0.796
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194051	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194096-194144	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194282-194330	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204545	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204590-204638	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204776-204824	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195379	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195424-195472	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195610-195658	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176334	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176379-176427	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176565-176613	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27282-27330	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27381-27429	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51882	11	0.776
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19437	11	0.776
NZ_CP042980_1	1.1\|64059\|54\|NZ_CP042980\|CRISPRCasFinder	64059-64112	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211778	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211978	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194189-194237	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222272	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222472	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204683-204731	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213106	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213306	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195517-195565	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194061	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194261	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176472-176520	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11559	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397136	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404181	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28042	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31347	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33059-33107	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141016-141064	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MF374379	Escherichia phage DN1, complete genome	31158-31206	12	0.755
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14153	13	0.735
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6907	13	0.735
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NC_049343	Escherichia phage 500465-2, complete genome	31797-31845	13	0.735
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-142	13	0.735
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82890	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313640	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63937	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110186-110234	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	198909-198957	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40353	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	91418-91466	14	0.714
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102592	15	0.694
NZ_CP042980_4	4.1\|2340513\|49\|NZ_CP042980\|CRISPRCasFinder	2340513-2340561	49	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56079	15	0.694

1. spacer 1.1|64059|54|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

3. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

4. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

5. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

6. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

7. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

8. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

9. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

10. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

11. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

12. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

13. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

14. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

15. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

16. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

17. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

18. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

19. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

20. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga--	CRISPR spacer
cacaagtgccggatgcggcgtaaacgccttatccggcctacg--ccagact	Protospacer
. *..***********.****.********************  .*.**

21. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gctggttgccggatgcggcgtgaacgccttatccggcctacattcggca	Protospacer
 *.** **********.************************. .. * *

22. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

23. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

24. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

25. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

26. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

27. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

28. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

29. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

30. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

31. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

32. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

33. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

34. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagc	Protospacer
. *.. .*********.************************** * .*

35. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagt	Protospacer
. *.. .*********.************************** * .*

36. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agctggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgc	Protospacer
  * ************.****.*******************.. *  *

37. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggtgtgaacgccttatccggcctacggatggcc	Protospacer
* .  .**********.*.************************ * *

38. spacer 1.1|64059|54|NZ_CP042980|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

39. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

40. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

41. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

42. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

43. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

44. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

45. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

46. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

47. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

48. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

49. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

50. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

51. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
aatttttgccggatgcggcgtgaacgccttatccggcctacaacgggca	Protospacer
  .   **********.************************..*  * *

52. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga---	CRISPR spacer
cacaattgccggatgcggcgtaaacgccttatccggcctaca---tggataa	Protospacer
. *.. **********.****.*******************.   .***

53. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttttcttgccggatgcggcgtaaacgccttatccggcctacaggacgtg	Protospacer
*..   **********.****.*******************.*  ** .

54. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ctcaaatgccggatgcggcgtgaacgccttatccggcctacgcacacta	Protospacer
..*...**********.*************************  .   *

55. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agcaaatgccggatgcggcgtaaacgccttatccggcctacatttggca	Protospacer
  *...**********.****.*******************. .* * *

56. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

57. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

58. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
* .  .**********.************************.. .** .

59. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gttgattgccggatgcggcgtaaacgccttatccggcctacattcggca	Protospacer
 ..*. **********.****.*******************. .. * *

60. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttgttttgccggatgcggcgtgaacgccttatccggcctacaaaaccat	Protospacer
*.    **********.************************..  * .

61. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtgtttgccggatgcggcgtgaacgccttatccgacctacgtgtgacg	Protospacer
  .*  **********.******************.******  * . .

62. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttatgttgccggatgcggcgtaaacgccttatccggcctacaaaagcaa	Protospacer
*.  * **********.****.*******************..    .*

63. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gtaaaatgccggatgcggcgtgaacgccttatccggcctacaaaccaag	Protospacer
 . ...**********.************************.. .*...

64. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acaaaatgccggatgcggcgtaaacgccttatccggcctacaaaatcgt	Protospacer
 * ...**********.****.*******************..  . *

65. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

66. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

67. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

68. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtaaacgccttatccggcctacaaaaagcg	Protospacer
* .  .**********.****.*******************..   * .

69. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

70. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtcaatgccggatgcggcgtgaacgccttatccggcctacaaaagcat	Protospacer
  . ..**********.************************..    .

71. spacer 4.1|2340513|49|NZ_CP042980|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtaaacgccttatccggcctacaaaaaacg	Protospacer
. * . **********.****.*******************..   . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

172027 : 242915

Shigella_phage(17.65%)

transposase,plate,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753940.1\|172027_173452_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	6.5e-27	29.2
WP_000272188.1\|174851_175238_-	DUF3461 family protein	NA	NA	NA	NA
WP_001186650.1\|175551_176376_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094600.1\|176406_179079_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018194.1\|179140_179935_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246888.1\|180302_181028_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000818114.1\|181285_182137_+	elongation factor Ts	NA	NA	NA	NA
WP_000224573.1\|182283_183009_+	UMP kinase	NA	NA	NA	NA
WP_000622418.1\|183300_183858_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811938.1\|183949_185146_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_001295562.1\|185334_186093_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	7.7e-27	44.4
WP_000922446.1\|186105_186963_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_005053372.1\|186974_188327_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|188356_190789_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|190910_191396_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139282.1\|191399_192425_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|192529_192985_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|192988_193777_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000132065.1\|193776_194925_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569431.1\|194921_195518_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.8e-26	40.0
WP_001294739.1\|195554_199037_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.8e-209	36.9
WP_000055741.1\|199049_200009_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001021013.1\|200107_202249_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|202305_202695_+	VOC family protein	NA	NA	NA	NA
WP_000176576.1\|202759_204058_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|204106_204367_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000553593.1\|204353_204593_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|204718_205264_+	YaeQ family protein	NA	NA	NA	NA
WP_000635538.1\|205260_205683_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239155.1\|205696_206407_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_005053355.1\|206561_207386_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260712.1\|207438_209157_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094030.1\|209267_209975_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202325.1\|209971_210376_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|210493_211309_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294596.1\|211348_212002_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593997.1\|211994_213026_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140187.1\|213213_213789_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997035.1\|219547_220351_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	1.6e-38	36.2
WP_005093015.1\|220389_221736_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000648578.1\|221785_222700_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|222940_223741_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211683.1\|223818_224589_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644679.1\|224636_225983_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	3.7e-08	35.1
WP_001052754.1\|226054_226810_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_005060310.1\|226843_227566_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|227562_228030_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001366128.1\|228094_228826_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_000402248.1\|229165_230212_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_000371478.1\|230781_232665_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001276640.1\|232680_233175_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_094108335.1\|234955_236228_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	6.8e-177	99.0
WP_000343116.1\|236285_236573_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.8e-29	60.0
WP_000747032.1\|236586_237755_-\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_000785540.1\|237844_238693_+	Packaged DNA stabilization protein gp26	Q716G6	Shigella_phage	2.1e-102	98.6
WP_000627639.1\|238692_239148_+	DUF2824 family protein	A0A2D1GLX4	Escherichia_phage	8.8e-87	99.3
WP_000964877.1\|239150_239843_+	DNA transfer protein	G5DA80	Enterobacteria_phage	2.1e-111	99.6
WP_000246949.1\|239852_241184_+	phage DNA ejection protein	A0A2D1GLX5	Escherichia_phage	3.1e-217	99.8
WP_005060393.1\|241184_242915_+	lytic transglycosylase domain-containing protein	A0A088CQ71	Enterobacteria_phage	3.1e-281	98.1

DBSCAN-SWA_2

648973 : 755320

104

Enterobacteria_phage(36.21%)

capsid,terminase,tRNA,transposase,head,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157892.1\|648973_651556_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.4e-184	42.3
WP_001269672.1\|651570_652152_+	LPS assembly lipoprotein LptE	NA	NA	NA	NA
WP_000620544.1\|652151_653183_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_000838889.1\|653184_653826_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_001241888.1\|653849_654461_+	adenosylcobalamin/alpha-ribazole phosphatase	NA	NA	NA	NA
WP_001161664.1\|654720_655038_+	ribosome silencing factor	NA	NA	NA	NA
WP_000776104.1\|655041_655509_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_000776197.1\|655539_657441_+	peptidoglycan DD-transpeptidase MrdA	NA	NA	NA	NA
WP_000131719.1\|657443_658556_+	peptidoglycan glycosyltransferase MrdB	NA	NA	NA	NA
WP_001231405.1\|658566_659655_+	endolytic peptidoglycan transglycosylase RlpA	F5B3X9	Synechococcus_phage	3.6e-09	53.2
WP_001092085.1\|659793_661005_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	7.5e-101	47.2
WP_000850550.1\|661115_661379_+	YbeD family protein	NA	NA	NA	NA
WP_000284045.1\|661479_662121_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_000378035.1\|662379_663333_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_000042632.1\|663541_664507_+	lipoyl synthase	NA	NA	NA	NA
WP_000503931.1\|664607_664811_-	twin-arginine translocase subunit TatE	NA	NA	NA	NA
WP_005049482.1\|664939_665728_-	deaminated glutathione amidase	NA	NA	NA	NA
WP_000939741.1\|665820_666204_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	6.8e-24	53.6
WP_000034825.1\|666257_666467_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	2.7e-22	78.1
WP_005049488.1\|666641_667202_-	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA
WP_000955063.1\|667790_669176_+	anaerobic C4-dicarboxylate transporter DcuC	NA	NA	NA	NA
WP_000833599.1\|669895_670405_-	DNA-binding protein	NA	NA	NA	NA
WP_077696331.1\|670567_670813_+	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	6.1e-18	63.2
WP_094081558.1\|672483_673639_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_011069283.1\|673651_673927_+	hypothetical protein	NA	NA	NA	NA
WP_000627468.1\|673923_674865_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	2.3e-153	85.6
WP_005060669.1\|675009_675366_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	4.7e-51	87.4
WP_000873153.1\|675369_676590_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.5e-192	85.6
WP_000184977.1\|676593_677337_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	5.3e-89	84.4
WP_149617741.1\|677227_678694_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.6e-259	91.0
WP_005020049.1\|678693_678927_-	hypothetical protein	A0A077KAW0	Edwardsiella_phage	6.2e-20	65.8
WP_005098291.1\|678914_679454_-	hypothetical protein	A0A077KAW0	Edwardsiella_phage	6.6e-49	61.4
WP_094081542.1\|679438_680667_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_000204761.1\|680742_681426_-\|terminase	PBSX family phage terminase large subunit	K4NXU1	Acinetobacter_phage	7.0e-96	73.4
WP_001108106.1\|681376_682141_-	hypothetical protein	G8C7P2	Escherichia_phage	7.0e-12	55.4
WP_011069285.1\|682335_682848_+	VTT domain-containing protein	NA	NA	NA	NA
WP_128567431.1\|682980_683172_-	hypothetical protein	Q76H62	Enterobacteria_phage	1.3e-28	98.4
WP_000747032.1\|683254_684422_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_000988183.1\|684451_685330_+	ATP-binding protein	Q8W641	Enterobacteria_phage	3.0e-139	95.6
WP_000211324.1\|685326_686718_+	replicative DNA helicase	Q8W640	Enterobacteria_phage	3.6e-256	95.7
WP_001064799.1\|686714_686972_+	hypothetical protein	Q8W639	Enterobacteria_phage	1.1e-33	93.8
WP_000111769.1\|687066_687267_+	protein ninH	A0A088CC23	Shigella_phage	1.1e-20	74.2
WP_001204832.1\|687259_687640_+	antitermination protein	A0A088CD47	Shigella_phage	8.2e-62	87.9
WP_000839566.1\|688442_688658_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	2.2e-32	94.4
WP_005083349.1\|688661_689291_+	hypothetical protein	Q08JA0	Stx2-converting_phage	4.7e-30	57.6
WP_001274722.1\|689356_689890_+	lysozyme	K7PLY1	Enterobacteria_phage	1.6e-100	98.3
WP_128567432.1\|690106_690301_+	hypothetical protein	H6WRZ6	Salmonella_phage	2.5e-27	100.0
WP_094081493.1\|690352_691508_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_024260032.1\|691831_693742_+\|terminase	phage terminase large subunit family protein	K7P6G6	Enterobacteria_phage	5.3e-250	64.1
WP_000259004.1\|693742_693946_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	8.6e-10	57.4
WP_001254019.1\|695525_697031_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.3e-98	53.0
WP_000256830.1\|697067_697415_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.4e-21	55.9
WP_000522647.1\|697472_698501_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.8e-116	62.8
WP_000201488.1\|698552_698939_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000348593.1\|698950_699328_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.5e-31	57.3
WP_000677140.1\|699314_699899_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	6.0e-88	87.6
WP_001079407.1\|699895_700297_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	1.1e-69	94.0
WP_000211126.1\|700307_701048_+	Ig-like domain-containing protein	A5LH35	Enterobacteria_phage	1.5e-128	96.7
WP_000478927.1\|701106_701493_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.4e-61	92.2
WP_001161004.1\|701501_701831_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-55	99.1
WP_000371983.1\|701802_704844_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	86.5
WP_000447264.1\|704843_705173_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.4e-57	97.2
WP_001152490.1\|705172_705871_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.4e-121	89.7
WP_000194740.1\|705875_706619_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-145	94.7
WP_000090877.1\|706555_707158_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-88	85.6
WP_001152490.1\|709536_710235_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.4e-121	89.7
WP_000194740.1\|710239_710983_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-145	94.7
WP_000090877.1\|710919_711522_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-88	85.6
WP_000515521.1\|711582_715062_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	87.3
WP_001230368.1\|715129_715729_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	6.1e-104	93.5
WP_000930145.1\|717154_717778_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	5.1e-77	75.9
WP_000801162.1\|717957_719721_-	invasion plasmid antigen	NA	NA	NA	NA
WP_000767391.1\|720303_720780_-	kinase inhibitor	NA	NA	NA	NA
WP_005048541.1\|720838_722128_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	6.5e-18	28.6
WP_000951226.1\|722214_723255_+	biotin synthase BioB	NA	NA	NA	NA
WP_000118810.1\|723251_724406_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_000246759.1\|724392_725148_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_000044878.1\|725140_725818_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000042516.1\|726396_728418_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_005048534.1\|728609_729518_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.4e-27	31.1
WP_005048531.1\|729914_730904_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_000084630.1\|730925_731438_+	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
WP_000080885.1\|731440_731926_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_000598624.1\|731918_732164_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_000852286.1\|732165_732618_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_000373626.1\|732754_733459_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000446914.1\|733663_734377_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000045466.1\|734412_735369_-	UPF0104 family protein	NA	NA	NA	NA
WP_000650363.1\|735368_736610_-	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_001113348.1\|736606_737368_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000871982.1\|737500_737911_+	YbhQ family protein	NA	NA	NA	NA
WP_000469031.1\|737872_738979_-	ABC transporter permease	NA	NA	NA	NA
WP_000070107.1\|738989_740123_-	ABC transporter permease	NA	NA	NA	NA
WP_000996107.1\|740115_741852_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-18	29.8
WP_000743444.1\|741844_742840_-	secretion protein HlyD	NA	NA	NA	NA
WP_001296991.1\|742842_743514_-	DNA-binding transcriptional regulator CecR	NA	NA	NA	NA
WP_001145124.1\|745136_745619_-	N-glycosidase YbiA	A0A0H3TLU0	Faustovirus	1.3e-35	52.0
WP_005048497.1\|745738_747889_+	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	3.1e-41	25.6
WP_000386531.1\|747916_748879_+	DNA-binding protein YbiB	NA	NA	NA	NA
WP_000443521.1\|749019_750105_+	hydroxycarboxylate dehydrogenase HcXB	NA	NA	NA	NA
WP_000849301.1\|750333_750594_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000135439.1\|750858_751125_-	C4-type zinc finger protein YbiI	E5G6L7	Salmonella_phage	4.0e-07	45.6
WP_000990151.1\|751198_751876_-	PKHD-type hydroxylase YbiX	Q5GQB0	Synechococcus_phage	3.4e-18	29.7
WP_005083739.1\|753973_755320_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

832916 : 952035

Stx2-converting_phage(17.78%)

integrase,transposase,tRNA,protease

attL 884041:884100|attR 900222:900696

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094085506.1\|832916_834190_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_001298299.1\|834585_835281_-	aquaporin Z	NA	NA	NA	NA
WP_000599806.1\|836481_838140_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_005067329.1\|838136_839093_-	VirK/YbjX family protein	NA	NA	NA	NA
WP_047343235.1\|839243_840359_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_000188161.1\|840355_842302_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	5.5e-37	39.6
WP_000410785.1\|842374_842599_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000520781.1\|842921_843242_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934033.1\|843272_845549_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.3e-166	42.5
WP_001040187.1\|846292_846511_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_001241678.1\|846795_847500_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001202220.1\|847541_849263_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	9.9e-22	25.4
WP_001043574.1\|849263_851030_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.6e-22	24.0
WP_000537402.1\|851152_852118_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.3
WP_000228473.1\|852661_853156_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000077083.1\|853290_857319_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_001295343.1\|857473_858085_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000067746.1\|858095_859439_+	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	4.3e-81	41.0
WP_000886683.1\|859529_860822_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000213098.1\|863515_864133_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000534651.1\|864134_864926_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000165870.1\|864961_865588_-	hydrolase	NA	NA	NA	NA
WP_000109301.1\|865902_867051_+	MFS transporter	NA	NA	NA	NA
WP_004967157.1\|867363_868038_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.0e-10	30.8
WP_005048975.1\|868034_868385_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-27	68.7
WP_005063916.1\|868381_869983_+\|transposase	IS66-like element ISSfl3 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-146	61.6
WP_087880099.1\|870522_871691_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_000228005.1\|871874_872165_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	9.6e-47	88.5
WP_094081518.1\|872462_873618_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-66	44.4
WP_000687442.1\|874069_874357_-	hypothetical protein	NA	NA	NA	NA
WP_000882657.1\|874606_874819_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	4.0e-26	90.0
WP_029716636.1\|874989_875655_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_005048249.1\|875823_876180_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	5.1e-58	97.5
WP_001118167.1\|876237_876660_-	DUF977 family protein	A0A2I6TCA7	Escherichia_phage	5.9e-53	76.6
WP_000702036.1\|878282_878705_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.8e-68	93.6
WP_000912291.1\|878688_878916_-	transcriptional regulator	NA	NA	NA	NA
WP_000787424.1\|878992_879400_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.7e-28	49.6
WP_001091985.1\|879602_879758_+	DUF1391 family protein	M4QQ57	Salicola_phage	5.2e-07	53.2
WP_001005968.1\|879759_879963_+	hypothetical protein	I6PDF6	Cronobacter_phage	1.0e-10	82.5
WP_094081542.1\|880204_881433_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_000935590.1\|881980_882829_+	Rha family phage regulatory protein	A0A0P0ZE80	Stx2-converting_phage	9.7e-55	57.0
WP_094108368.1\|883342_884471_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.0e-59	41.9
884041:884100	attL	NA	NA	NA	NA
WP_094081550.1\|885484_886641_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_005061679.1\|886706_887324_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	5.7e-81	76.5
WP_001039888.1\|887323_887503_+	hypothetical protein	NA	NA	NA	NA
WP_011110560.1\|887503_889330_-	invasion protein	NA	NA	NA	NA
WP_005061694.1\|889820_889952_+	hypothetical protein	A0A0C4UR34	Shigella_phage	2.6e-07	86.7
WP_000815445.1\|890211_891207_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_000723652.1\|892384_893437_+	4-oxalomesaconate tautomerase	NA	NA	NA	NA
WP_001036463.1\|893512_894946_+	anion permease	NA	NA	NA	NA
WP_000593940.1\|895128_897309_+	hydratase	NA	NA	NA	NA
WP_001091542.1\|897449_898733_-	putative acyl-CoA thioester hydrolase	NA	NA	NA	NA
WP_024219169.1\|898867_899749_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	7.2e-162	99.7
WP_001088287.1\|901581_902256_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
900222:900696	attR	NA	NA	NA	NA
WP_005048975.1\|902252_902603_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-27	68.7
WP_000638232.1\|904340_904529_+\|transposase	transposase domain-containing protein	A0A0P0ZEB3	Stx2-converting_phage	4.5e-05	61.8
WP_128874903.1\|905905_906550_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_094081495.1\|907003_908159_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_094105059.1\|908065_908392_+	hypothetical protein	NA	NA	NA	NA
WP_094081495.1\|909020_910177_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_000111043.1\|910585_911326_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_001292813.1\|911517_913800_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	4.9e-162	41.2
WP_000642544.1\|913854_914712_-	formate transporter FocA	NA	NA	NA	NA
WP_149617743.1\|915117_916878_-	YcaO-like family protein	NA	NA	NA	NA
WP_000057149.1\|917832_918921_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
WP_000445222.1\|918991_920275_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_005093015.1\|920400_921747_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_001295345.1\|921882_922647_+	metallopeptidase YcaL	NA	NA	NA	NA
WP_000125013.1\|922819_923503_+	(d)CMP kinase	NA	NA	NA	NA
WP_000140327.1\|923613_925287_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_000167336.1\|925446_925731_+	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_000551266.1\|928233_929982_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.3e-57	29.8
WP_000570540.1\|929978_930965_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000056529.1\|931001_932234_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000350058.1\|932285_932468_+	protein YcaR	NA	NA	NA	NA
WP_000011599.1\|932464_933211_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000436922.1\|933364_934258_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000899599.1\|934234_935014_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_005047510.1\|935149_935935_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288850.1\|935931_937254_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_001295931.1\|937234_937939_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572706.1\|937938_942399_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_005083739.1\|942543_943890_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000925980.1\|944097_945945_+	L,D-transpeptidase	NA	NA	NA	NA
WP_001295932.1\|946125_946674_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
WP_001109487.1\|946700_947348_+	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA
WP_000462668.1\|947570_948761_-	aspartate transaminase	NA	NA	NA	NA
WP_000977934.1\|948945_950034_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.8e-98	54.3
WP_000117881.1\|950634_952035_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1

DBSCAN-SWA_4

1041322 : 1078818

Acinetobacter_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000937577.1\|1041322_1042510_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000124119.1\|1042509_1042875_-	hypothetical protein	NA	NA	NA	NA
WP_000154398.1\|1043695_1044823_+	iron uptake system protein EfeO	NA	NA	NA	NA
WP_001199452.1\|1044828_1046094_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_005047400.1\|1046700_1047489_+	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	8.6e-90	75.7
WP_085947598.1\|1047598_1048761_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_000611853.1\|1049352_1050339_+	hypothetical protein	NA	NA	NA	NA
WP_000283673.1\|1051846_1052584_+	zinc-binding phosphatase	NA	NA	NA	NA
WP_001001917.1\|1052607_1053162_+	molecular chaperone YcdY	NA	NA	NA	NA
WP_001297187.1\|1053263_1053755_+	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_001264088.1\|1054620_1055037_-	curli production assembly/transport protein CsgF	NA	NA	NA	NA
WP_000833291.1\|1055061_1055451_-	curli production assembly/transport protein CsgE	NA	NA	NA	NA
WP_000481500.1\|1055455_1056106_-	transcriptional regulator CsgD	NA	NA	NA	NA
WP_005047380.1\|1056859_1057315_+	curlin minor subunit CsgB	NA	NA	NA	NA
WP_001144017.1\|1058590_1058956_+	curlin major subunit CsgA	NA	NA	NA	NA
WP_000992821.1\|1059014_1059347_+	curli assembly protein CsgC	NA	NA	NA	NA
WP_000489563.1\|1059467_1059779_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_000857408.1\|1059873_1060407_+	O-acetyl-ADP-ribose deacetylase	Q71G61	Red_sea_bream_iridovirus	7.8e-26	40.2
WP_011069326.1\|1060348_1061830_+	cardiolipin synthase ClsC	NA	NA	NA	NA
WP_001070350.1\|1061837_1062995_-	glucans biosynthesis protein MdoC	NA	NA	NA	NA
WP_011069327.1\|1063388_1064924_+	glucans biosynthesis protein MdoG	NA	NA	NA	NA
WP_001295445.1\|1064916_1067460_+	glucans biosynthesis glucosyltransferase MdoH	NA	NA	NA	NA
WP_000937577.1\|1067875_1069063_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000124119.1\|1069062_1069428_-	hypothetical protein	NA	NA	NA	NA
WP_000818777.1\|1072485_1072731_+	hypothetical protein	NA	NA	NA	NA
WP_087880099.1\|1072800_1073968_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_094081542.1\|1074541_1075769_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_094081550.1\|1077662_1078818_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7

DBSCAN-SWA_5

1151705 : 1165170

uncultured_Caudovirales_phage(90.91%)

portal,integrase,terminase,head,tail,protease

attL 1141984:1141998|attR 1161038:1161052

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1141984:1141998	attL	NA	NA	NA	NA
WP_000085257.1\|1151705_1152935_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.4e-132	55.9
WP_000953271.1\|1153309_1153498_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
WP_154074686.1\|1153547_1153877_-	hypothetical protein	NA	NA	NA	NA
WP_000103622.1\|1154001_1154181_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.2e-10	58.6
WP_000226783.1\|1154310_1154511_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_005005155.1\|1154500_1154722_+	hypothetical protein	NA	NA	NA	NA
WP_001204964.1\|1154936_1155170_+	hypothetical protein	NA	NA	NA	NA
WP_000770157.1\|1155175_1155475_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761798.1\|1155471_1157220_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.3e-89	39.5
WP_000557473.1\|1157508_1157787_+	hypothetical protein	NA	NA	NA	NA
WP_001294165.1\|1157783_1158089_+	hypothetical protein	NA	NA	NA	NA
WP_000126624.1\|1158098_1158260_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001132078.1\|1158401_1158626_+	hypothetical protein	NA	NA	NA	NA
WP_000504054.1\|1160123_1160696_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.6e-61	63.5
WP_168219891.1\|1160697_1161909_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.5e-186	78.2
1161038:1161052	attR	NA	NA	NA	NA
WP_001020662.1\|1161905_1162244_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-31	52.7
WP_000134107.1\|1162240_1162537_+\|head,tail	phage head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.2e-30	62.2
WP_001145905.1\|1162536_1162977_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
WP_000174068.1\|1162960_1163143_+	hypothetical protein	NA	NA	NA	NA
WP_029716858.1\|1163198_1163525_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.2e-46	79.6
WP_000127901.1\|1163508_1165170_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	4.4e-277	81.4

DBSCAN-SWA_6

1362498 : 1383272

Escherichia_phage(52.63%)

integrase,transposase,tail

attL 1368392:1368405|attR 1381915:1381928

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094081493.1\|1362498_1363655_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_094105053.1\|1364182_1365456_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.0e-177	99.0
WP_000788998.1\|1366249_1366996_+	ATP-binding protein	V5UQI5	Shigella_phage	1.4e-121	88.8
WP_001118167.1\|1367010_1367433_+	DUF977 family protein	A0A2I6TCA7	Escherichia_phage	5.9e-53	76.6
WP_005048249.1\|1367490_1367847_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	5.1e-58	97.5
WP_000256998.1\|1367939_1368158_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	1.2e-28	90.3
WP_001229298.1\|1368159_1368525_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	2.5e-68	99.2
1368392:1368405	attL	NA	NA	NA	NA
WP_000208062.1\|1368521_1369187_+	hypothetical protein	A0A076G611	Escherichia_phage	6.1e-36	44.9
WP_000610655.1\|1369186_1369552_+	DUF551 domain-containing protein	Q08J61	Stx2-converting_phage	6.1e-30	53.7
WP_000018421.1\|1369949_1370162_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.1e-27	92.9
WP_000940329.1\|1371485_1372085_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.4e-108	94.5
WP_000228038.1\|1372084_1372375_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.3e-47	89.6
WP_000640143.1\|1372371_1372926_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.7e-71	70.5
WP_005049799.1\|1373066_1373252_+	hypothetical protein	A0A291AWU3	Escherichia_phage	1.5e-05	63.4
WP_094081550.1\|1373313_1374469_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_045178261.1\|1374516_1375023_+	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	1.9e-42	73.2
WP_000615489.1\|1375656_1377261_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_094106009.1\|1378018_1379187_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.8e-184	99.7
WP_134795493.1\|1379210_1379369_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_011069357.1\|1381043_1381412_+	hypothetical protein	A0A0C4UQV0	Shigella_phage	2.6e-20	55.4
WP_051122911.1\|1382003_1383272_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	5.7e-75	43.2
1381915:1381928	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1547784 : 1604650

Shigella_phage(22.73%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000534858.1\|1547784_1548024_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_000323025.1\|1548023_1548311_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000813254.1\|1548382_1548538_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000980987.1\|1548755_1549007_+	hypothetical protein	NA	NA	NA	NA
WP_001265249.1\|1549353_1550403_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	3.2e-108	54.3
WP_000904111.1\|1550415_1550772_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_000762882.1\|1550786_1551608_+	antitermination protein	K7P7B9	Enterobacteria_phage	6.1e-78	58.6
WP_000871291.1\|1552906_1553242_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_000874243.1\|1553501_1553690_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_001323614.1\|1553686_1553848_+	hypothetical protein	Q08JA2	Stx2-converting_phage	5.4e-15	91.3
WP_000372594.1\|1553997_1554177_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	4.1e-24	91.5
WP_094108347.1\|1554201_1555358_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.5e-66	44.4
WP_000527804.1\|1556527_1557988_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.1e-42	29.6
WP_000214712.1\|1558023_1558227_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000215549.1\|1558404_1559091_-	DNA-binding transcriptional regulator YdfH	NA	NA	NA	NA
WP_005050098.1\|1559179_1559926_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_005068122.1\|1560062_1562108_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_001024558.1\|1562152_1562671_-	2-oxo-tetronate isomerase	NA	NA	NA	NA
WP_094108358.1\|1563236_1564392_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.8e-67	44.7
WP_000901367.1\|1564640_1564736_-	protein MgtS	NA	NA	NA	NA
WP_000212732.1\|1564862_1565981_-	efflux MFS transporter YdeE	NA	NA	NA	NA
WP_000087224.1\|1566244_1567144_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_000803661.1\|1567174_1567393_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000091199.1\|1567424_1567808_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000843419.1\|1567827_1568262_-	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000885035.1\|1568473_1569139_+	NAAT family transporter MarC	NA	NA	NA	NA
WP_000210809.1\|1569163_1570354_-	L-arabinose MFS transporter	NA	NA	NA	NA
WP_000258546.1\|1570503_1571619_-	putative protein YneK	NA	NA	NA	NA
WP_005050114.1\|1571698_1572634_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_000257419.1\|1572697_1573624_+	glutaminase B	NA	NA	NA	NA
WP_001191025.1\|1573623_1573968_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_000558037.1\|1574121_1575540_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.1e-18	37.5
WP_000854655.1\|1575766_1576846_+	tagaturonate reductase	NA	NA	NA	NA
WP_000957853.1\|1578350_1578539_-	hypothetical protein	NA	NA	NA	NA
WP_005050130.1\|1578739_1579654_+	hypothetical protein	NA	NA	NA	NA
WP_001286595.1\|1579657_1580416_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_000558531.1\|1580455_1580746_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001191842.1\|1580769_1581540_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000113157.1\|1582982_1583885_-	carbohydrate kinase	NA	NA	NA	NA
WP_000154339.1\|1583963_1584917_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_149617746.1\|1585165_1586701_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	9.8e-21	30.4
WP_000911160.1\|1586694_1587723_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001222721.1\|1587722_1588715_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_167389525.1\|1589964_1591192_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	98.7
WP_085949497.1\|1591242_1592390_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.3e-147	92.6
WP_005050183.1\|1592466_1593681_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	2.4e-46	29.0
WP_001295395.1\|1593886_1594213_-	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
WP_000705197.1\|1594347_1594689_+	DUF1283 family protein	NA	NA	NA	NA
WP_001321287.1\|1595286_1595997_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_005050191.1\|1596104_1596410_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_005091980.1\|1596608_1596929_+	dimethylsulfoxide reductase	NA	NA	NA	NA
WP_000207512.1\|1598740_1599730_-	hypothetical protein	NA	NA	NA	NA
WP_000971490.1\|1599814_1600306_-	hypothetical protein	NA	NA	NA	NA
WP_024194789.1\|1600416_1600614_-	hypothetical protein	NA	NA	NA	NA
WP_000199921.1\|1600626_1601127_-	hypothetical protein	NA	NA	NA	NA
WP_001091025.1\|1601116_1601632_-	hypothetical protein	NA	NA	NA	NA
WP_000113584.1\|1602062_1602431_-	hypothetical protein	NA	NA	NA	NA
WP_087880099.1\|1603481_1604650_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0

DBSCAN-SWA_8

1771533 : 1806829

Shigella_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000937575.1\|1771533_1772721_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_005050384.1\|1772991_1773657_-	colanic acid/biofilm transcriptional regulator McbR	NA	NA	NA	NA
WP_005050386.1\|1773854_1774892_-	NADPH-dependent curcumin/dihydrocurcumin reductase	NA	NA	NA	NA
WP_167550002.1\|1775021_1776250_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	6.5e-177	98.7
WP_000027560.1\|1776408_1776927_+	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	NA	NA	NA	NA
WP_001076516.1\|1776923_1777373_+	DMT family transporter	NA	NA	NA	NA
WP_000018633.1\|1777373_1777607_-	YdcY family protein	NA	NA	NA	NA
WP_032323992.1\|1777692_1777866_-	orphan toxin OrtT	NA	NA	NA	NA
WP_001303494.1\|1778060_1778156_+	stress response membrane protein YncL	NA	NA	NA	NA
WP_000867989.1\|1778557_1779367_-	CatB-related O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	5.9e-17	41.0
WP_001163923.1\|1779576_1781001_-	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_000555458.1\|1781022_1781817_-	ABC transporter permease	NA	NA	NA	NA
WP_000937573.1\|1782655_1783843_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001260991.1\|1785455_1786112_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586723.1\|1786414_1787008_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_005047890.1\|1787004_1787997_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_001234071.1\|1788120_1789101_+	acetyltransferase	NA	NA	NA	NA
WP_000140890.1\|1789095_1789632_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|1789694_1789919_-	YdcH family protein	NA	NA	NA	NA
WP_000375966.1\|1790058_1791714_-	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_000013771.1\|1791938_1793282_-	VOC family protein	NA	NA	NA	NA
WP_000414573.1\|1793498_1794422_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001098545.1\|1794459_1796100_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_094081542.1\|1797721_1798950_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_094081541.1\|1799016_1800173_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.0e-68	44.7
WP_023517637.1\|1800547_1800697_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|1800768_1800942_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_000428998.1\|1801186_1801717_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000115920.1\|1802947_1804387_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_094106009.1\|1805661_1806829_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.8e-184	99.7

DBSCAN-SWA_9

1833868 : 1934514

Enterobacteria_phage(35.0%)

integrase,transposase,tRNA,tail

attL 1851413:1851472|attR 1916505:1916943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000081423.1\|1833868_1834804_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.2e-144	97.3
WP_000123730.1\|1834932_1836300_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.2e-51	33.1
WP_000387377.1\|1836777_1837761_-	zinc transporter ZntB	NA	NA	NA	NA
WP_011069405.1\|1840085_1841540_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_000957853.1\|1842044_1842233_+	hypothetical protein	NA	NA	NA	NA
WP_000587200.1\|1843604_1844252_-	HlyD family secretion protein	NA	NA	NA	NA
WP_000156575.1\|1844348_1845164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000945011.1\|1845707_1846223_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-24	42.8
WP_000611911.1\|1846417_1847170_+	fumarate/nitrate reduction transcriptional regulator Fnr	NA	NA	NA	NA
WP_001262123.1\|1847321_1848272_+	universal stress protein UspE	NA	NA	NA	NA
WP_000124119.1\|1849675_1850041_+	hypothetical protein	NA	NA	NA	NA
WP_000937575.1\|1850040_1851228_+\|transposase	IS91 family transposase	NA	NA	NA	NA
1851413:1851472	attL	NA	NA	NA	NA
WP_000559908.1\|1851903_1852935_+	low conductance mechanosensitive channel YnaI	NA	NA	NA	NA
WP_000683016.1\|1852985_1854599_-	murein tripeptide ABC transporter substrate-binding protein MppA	NA	NA	NA	NA
WP_005127484.1\|1858048_1858330_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	9.8e-12	42.4
WP_001189099.1\|1858295_1858688_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	2.0e-31	54.8
WP_000976476.1\|1859775_1860117_-	YebY family protein	NA	NA	NA	NA
WP_000168747.1\|1861005_1861380_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000916763.1\|1861518_1861749_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.3e-14	61.8
WP_000944268.1\|1862530_1863193_+	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	3.5e-07	41.6
WP_000936980.1\|1863189_1865250_-	oligopeptidase B	NA	NA	NA	NA
WP_000024751.1\|1865459_1866119_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_005047608.1\|1866445_1866802_-	protein YebF	NA	NA	NA	NA
WP_000173488.1\|1867292_1868471_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_000800512.1\|1868526_1869168_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_001069479.1\|1869204_1871016_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_000301736.1\|1871250_1872726_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	9.9e-79	37.3
WP_001056694.1\|1873063_1873933_+	DNA-binding transcriptional regulator HexR	NA	NA	NA	NA
WP_000044417.1\|1874060_1875503_+	pyruvate kinase	NA	NA	NA	NA
WP_000448385.1\|1875633_1876605_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001184045.1\|1876724_1878047_-	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	1.2e-14	40.9
WP_001342995.1\|1878062_1878995_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
WP_000202992.1\|1879073_1879829_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	3.8e-18	28.3
WP_000571470.1\|1879825_1880611_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_000568525.1\|1880757_1881768_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.8e-08	25.2
WP_000580324.1\|1881776_1882388_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_001386853.1\|1882526_1882592_-	hypothetical protein	NA	NA	NA	NA
WP_001024930.1\|1882661_1883264_+	YebB family permuted papain-like enzyme	NA	NA	NA	NA
WP_000974712.1\|1883265_1883787_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.0e-10	35.1
WP_000907248.1\|1883821_1884562_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001300367.1\|1884590_1885043_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
WP_001258670.1\|1885160_1886933_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_000891627.1\|1887242_1887497_+	isochorismatase family protein	NA	NA	NA	NA
WP_005047585.1\|1887688_1888885_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001210039.1\|1889613_1889862_+	DinI-like family protein	K7PLW4	Enterobacteria_phage	4.1e-38	98.8
WP_005031414.1\|1890460_1892212_+	T3SS effector E3 ubiquitin-protein ligase IpaH2	NA	NA	NA	NA
WP_000930145.1\|1892391_1893015_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	5.1e-77	75.9
WP_001230368.1\|1894440_1895040_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	6.1e-104	93.5
WP_000515521.1\|1895107_1898587_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	87.3
WP_000090877.1\|1898647_1899250_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-88	85.6
WP_000194740.1\|1899186_1899930_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-145	94.7
WP_001152490.1\|1899934_1900633_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.4e-121	89.7
WP_000447264.1\|1900632_1900962_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.4e-57	97.2
WP_000371983.1\|1900961_1904003_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	86.5
WP_001161004.1\|1903974_1904304_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-55	99.1
WP_000478927.1\|1904312_1904699_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.4e-61	92.2
WP_005047550.1\|1904757_1905498_-	Ig-like domain-containing protein	A5LH35	Enterobacteria_phage	4.9e-127	96.3
WP_001079406.1\|1905508_1905910_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	1.6e-71	97.7
WP_000677116.1\|1905906_1906497_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.4e-78	78.2
WP_000753026.1\|1906483_1906855_-\|tail	tail attachment protein	NA	NA	NA	NA
WP_001074423.1\|1906866_1907268_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	3.3e-37	66.2
WP_005049126.1\|1907531_1908728_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001064885.1\|1909913_1910603_-	antiterminator	I6PDF8	Cronobacter_phage	2.9e-57	49.4
WP_001215517.1\|1910599_1910959_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.3e-40	66.1
WP_000248820.1\|1910958_1911096_-	hypothetical protein	Q8W639	Enterobacteria_phage	1.9e-16	100.0
WP_000755956.1\|1912816_1913644_+	hypothetical protein	Q8W654	Enterobacteria_phage	2.3e-125	94.5
WP_001099210.1\|1913687_1914437_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	1.7e-135	96.0
WP_000586688.1\|1914433_1915003_+	hypothetical protein	A0A088C4R7	Shewanella_sp._phage	6.8e-28	39.4
WP_000457719.1\|1915126_1915369_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	6.2e-31	85.0
WP_001030133.1\|1915372_1915519_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.4e-22	95.8
WP_000528720.1\|1915527_1915725_+	excisionase family protein	Q8W657	Enterobacteria_phage	3.7e-26	98.2
WP_094108353.1\|1915699_1916868_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.7
WP_000905997.1\|1917097_1917448_+	DUF72 domain-containing protein	NA	NA	NA	NA
1916505:1916943	attR	NA	NA	NA	NA
WP_005048647.1\|1917500_1917896_+	MAPEG family protein	NA	NA	NA	NA
WP_000019588.1\|1917936_1918680_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000564755.1\|1918676_1919648_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_001229400.1\|1919812_1922242_-	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_001214308.1\|1922266_1923367_-	NapC/NirT family cytochrome c	NA	NA	NA	NA
WP_001185741.1\|1923754_1924501_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005048653.1\|1924514_1925081_-	VOC family protein	NA	NA	NA	NA
WP_001025297.1\|1925296_1927030_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	6.8e-87	33.7
WP_005063152.1\|1927206_1927695_+	lysozyme inhibitor LprI family protein	NA	NA	NA	NA
WP_001259572.1\|1929161_1929500_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000455174.1\|1932952_1933411_+	HD domain-containing protein	NA	NA	NA	NA
WP_094108353.1\|1933345_1934514_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-182	99.7

DBSCAN-SWA_10

2004857 : 2068759

Stx2-converting_phage(23.33%)

tail,transposase,holin,integrase

attL 1996234:1996247|attR 2071619:2071632

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1996234:1996247	attL	NA	NA	NA	NA
WP_094081536.1\|2004857_2006005_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.5e-146	92.2
WP_111778310.1\|2006843_2008072_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	9.8e-173	96.7
WP_000218218.1\|2009715_2010567_+	protein deglycase HchA	NA	NA	NA	NA
WP_000826719.1\|2010674_2012033_-	two-component system sensor histidine kinase HprS	NA	NA	NA	NA
WP_001347103.1\|2012032_2012704_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	5.4e-32	35.2
WP_000920127.1\|2012836_2013250_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_149617750.1\|2014363_2014999_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007781.1\|2015256_2015907_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_000937511.1\|2016984_2017254_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-19	81.7
WP_000239881.1\|2017310_2017979_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014532281.1\|2018294_2019938_+	T3SS effector E3 ubiquitin-protein ligase IpaH4/H7	NA	NA	NA	NA
WP_000594909.1\|2022342_2022825_-	hypothetical protein	NA	NA	NA	NA
WP_000785377.1\|2022892_2024842_-\|tail	phage tail tape measure protein	Q8W620	Enterobacteria_phage	0.0e+00	98.2
WP_001251340.1\|2024926_2025262_-\|tail	phage tail assembly protein	Q8W621	Enterobacteria_phage	9.8e-51	97.2
WP_001062338.1\|2025261_2025618_-\|tail	phage tail tube protein	Q8W622	Enterobacteria_phage	5.3e-63	98.3
WP_000155744.1\|2025617_2027114_-\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8W623	Enterobacteria_phage	5.9e-273	97.4
WP_000497744.1\|2027110_2027272_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.2e-15	76.6
WP_094081529.1\|2027665_2028822_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.4e-66	44.7
WP_005049241.1\|2029696_2030047_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-26	67.5
WP_004967157.1\|2030043_2030718_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.0e-10	30.8
WP_000839572.1\|2030816_2031032_-\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_005049343.1\|2031832_2032516_-	antiterminator	I6PDF8	Cronobacter_phage	2.0e-58	49.8
WP_000140020.1\|2032512_2032878_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.1e-39	68.1
WP_001265248.1\|2032878_2033937_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.6e-89	48.0
WP_011069426.1\|2033938_2034217_-	hypothetical protein	I6PCV7	Cronobacter_phage	4.5e-09	45.0
WP_000935258.1\|2034384_2034597_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_005069274.1\|2035191_2035608_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.5e-24	72.0
WP_004974968.1\|2035774_2036812_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_001325918.1\|2037022_2037820_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_094081534.1\|2039526_2040695_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.9e-184	99.7
WP_005063096.1\|2040756_2041260_+	MFS transporter	NA	NA	NA	NA
WP_094081533.1\|2041321_2042477_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_001060217.1\|2042829_2044284_+	AMP nucleosidase	NA	NA	NA	NA
WP_000532920.1\|2044626_2045343_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001010988.1\|2047719_2048670_-	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_001011445.1\|2048771_2049689_-	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_000986341.1\|2050147_2051083_-	L,D-transpeptidase	NA	NA	NA	NA
WP_001165576.1\|2051144_2052224_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_005049317.1\|2052235_2052979_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_000261572.1\|2052975_2053485_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_094081558.1\|2053496_2054653_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-67	44.7
WP_001016348.1\|2056682_2056865_+	hypothetical protein	NA	NA	NA	NA
WP_000450409.1\|2056965_2057295_-	DUF496 family protein	NA	NA	NA	NA
WP_005088730.1\|2057466_2057766_-	hypothetical protein	NA	NA	NA	NA
WP_004967157.1\|2057835_2058510_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.0e-10	30.8
WP_045177795.1\|2060162_2061764_+\|transposase	IS66-like element ISSfl3 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.2e-147	61.3
WP_149617751.1\|2063078_2064235_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.5e-66	44.7
WP_094081542.1\|2064599_2065828_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_005049241.1\|2066819_2067170_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-26	67.5
WP_004967157.1\|2067166_2067841_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.0e-10	30.8
WP_001007949.1\|2067919_2068759_-\|integrase	integrase family protein	A0A0P0ZDN8	Stx2-converting_phage	1.3e-160	99.6
2071619:2071632	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2095783 : 2102090

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001100804.1\|2095783_2096329_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.5e-50	57.3
WP_000857518.1\|2096333_2097212_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-106	64.1
WP_001023623.1\|2097270_2098170_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.4e-29	35.6
WP_000699404.1\|2098169_2099255_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.7e-100	53.6
WP_000183041.1\|2099627_2100521_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.3e-46	42.0
WP_001116126.1\|2100695_2102090_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-18	30.9

DBSCAN-SWA_12

2129811 : 2210757

Enterobacteria_phage(53.33%)

tail,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005049144.1\|2129811_2131008_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000275665.1\|2134236_2135085_-	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA
WP_000489605.1\|2136582_2136804_-	hypothetical protein	NA	NA	NA	NA
WP_000805244.1\|2136999_2138523_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_000119071.1\|2138519_2139281_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_000003197.1\|2139277_2139937_-	VWA domain-containing protein	NA	NA	NA	NA
WP_005049126.1\|2140370_2141567_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000667591.1\|2145743_2148809_+	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA
WP_000130872.1\|2148809_2150225_+	MFS transporter	NA	NA	NA	NA
WP_000675144.1\|2150221_2151625_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.2e-33	29.4
WP_000137862.1\|2151621_2152344_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.2
WP_000929408.1\|2152534_2152867_+	YegP family protein	NA	NA	NA	NA
WP_005049106.1\|2153013_2154375_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	7.1e-217	99.5
WP_001295425.1\|2154716_2155034_-	hypothetical protein	NA	NA	NA	NA
WP_000807346.1\|2155439_2156339_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	9.8e-13	29.0
WP_000178554.1\|2156420_2157200_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844251.1\|2157299_2158340_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490711.1\|2159164_2160520_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000823288.1\|2160523_2160808_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182919.1\|2160838_2161291_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853873.1\|2161300_2162563_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_005049088.1\|2162591_2163446_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129574.1\|2163753_2164806_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000011982.1\|2165845_2166811_+	kinase	NA	NA	NA	NA
WP_000434038.1\|2166784_2167531_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_005092299.1\|2167578_2168400_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.5e-20	35.7
WP_000822271.1\|2168464_2169265_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195611.1\|2169261_2170050_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2170272_2170545_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134566.1\|2170666_2170996_+	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_000546036.1\|2171023_2171497_+	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA
WP_000153074.1\|2171715_2172054_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000945432.1\|2173184_2175665_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677404.1\|2175680_2176355_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830460.1\|2176435_2176960_-	hypothetical protein	NA	NA	NA	NA
WP_011110605.1\|2178029_2178311_-	YehE family protein	NA	NA	NA	NA
WP_001005437.1\|2178572_2179682_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_005049047.1\|2179813_2181847_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.8
WP_094081509.1\|2182242_2183398_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-67	44.7
WP_000636931.1\|2191540_2191948_+	hypothetical protein	NA	NA	NA	NA
WP_001302026.1\|2192489_2193578_+	MoxR family ATPase	NA	NA	NA	NA
WP_001294428.1\|2193588_2195868_+	hypothetical protein	NA	NA	NA	NA
WP_005049026.1\|2195860_2196997_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.4
WP_001087240.1\|2196993_2198997_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4
WP_005049020.1\|2199897_2200359_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-75	99.3
WP_005063442.1\|2200399_2200870_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.6e-81	98.7
WP_005048999.1\|2200916_2201636_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2201632_2203318_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000483772.1\|2203525_2204872_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_001261936.1\|2205269_2205518_+	DinI-like family protein	A5LH55	Enterobacteria_phage	4.1e-38	97.6
WP_000937511.1\|2205633_2205903_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-19	81.7
WP_000239881.1\|2205959_2206628_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014532281.1\|2206943_2208587_+	T3SS effector E3 ubiquitin-protein ligase IpaH4/H7	NA	NA	NA	NA
WP_149617752.1\|2209341_2210757_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	2.6e-76	54.0

DBSCAN-SWA_13

2672940 : 2727392

Enterobacteria_phage(26.67%)

tail,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295367.1\|2672940_2673477_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190655.1\|2673501_2674137_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001013778.1\|2674345_2675194_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_011110613.1\|2676577_2678404_+	invasion protein	NA	NA	NA	NA
WP_134801165.1\|2679137_2680427_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q8W611	Enterobacteria_phage	4.9e-74	42.6
WP_000902877.1\|2680450_2680996_-\|tail	tail fiber assembly protein	Q8W612	Enterobacteria_phage	2.5e-72	73.1
WP_011069472.1\|2680998_2681517_-	hypothetical protein	Q7Y4D4	Escherichia_virus	3.5e-39	53.0
WP_148936977.1\|2681580_2682808_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.5e-176	98.7
WP_001181756.1\|2683706_2684312_-	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	1.2e-30	43.8
WP_149617757.1\|2685075_2686231_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-67	44.7
WP_000054752.1\|2687586_2687847_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
WP_000128776.1\|2688040_2688121_-	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_000986029.1\|2688540_2688921_-	holo-ACP synthase	NA	NA	NA	NA
WP_004969731.1\|2688920_2689652_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399400.1\|2689663_2690392_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000020747.1\|2690403_2691309_-	GTPase Era	NA	NA	NA	NA
WP_001068343.1\|2691305_2691986_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_000002542.1\|2692257_2693232_-	signal peptidase I	NA	NA	NA	NA
WP_000790168.1\|2693247_2695047_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000589070.1\|2695244_2695724_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812053.1\|2695720_2696677_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168466.1\|2696676_2697327_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_001295364.1\|2697359_2697935_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001303621.1\|2697931_2698087_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001298974.1\|2699949_2700687_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|2700818_2702153_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_005051239.1\|2702187_2703069_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000187873.1\|2703171_2703759_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627802.1\|2703814_2704198_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262715.1\|2704502_2705192_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	5.5e-56	48.8
WP_000997396.1\|2705239_2706277_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2706483_2706903_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001343689.1\|2706971_2707670_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082966.1\|2707701_2710362_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_005051257.1\|2710475_2711831_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_005085125.1\|2711876_2712200_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|2712196_2713495_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_000483772.1\|2719328_2720675_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000197677.1\|2720725_2721463_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079112.1\|2721597_2722578_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000040142.1\|2722574_2723306_+	polyphenol oxidase	NA	NA	NA	NA
WP_005051270.1\|2723435_2726009_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.0e-127	35.3
WP_000483773.1\|2726045_2727392_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2818108 : 2828005

Pseudomonas_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272883.1\|2818108_2820670_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_005051483.1\|2821478_2822246_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	4.8e-69	56.3
WP_094092384.1\|2823631_2824787_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.0e-67	44.4
WP_001192434.1\|2824927_2827024_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	1.2e-173	48.7
WP_001249841.1\|2827025_2827277_-	helix-turn-helix domain-containing protein	A0A2D1GNH1	Pseudomonas_phage	1.1e-17	53.0
WP_001224024.1\|2827441_2828005_+	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	1.1e-35	55.8

DBSCAN-SWA_15

3010337 : 3069315

Enterobacteria_phage(33.33%)

integrase,transposase,tRNA,protease

attL 3017003:3017018|attR 3062135:3062150

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005051759.1\|3010337_3011096_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105566.1\|3011301_3012222_-	agmatinase	NA	NA	NA	NA
WP_005096955.1\|3013601_3015578_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_005051767.1\|3015586_3015718_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_011110620.1\|3015853_3016069_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3016372_3017527_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
3017003:3017018	attL	NA	NA	NA	NA
WP_001112298.1\|3017963_3019358_+	galactose/proton symporter	NA	NA	NA	NA
WP_005051770.1\|3019434_3019932_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286517.1\|3020026_3020734_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222509.1\|3020813_3021545_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593267.1\|3021557_3022508_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|3022616_3023180_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3023179_3023596_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001055627.1\|3023771_3024752_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997800.1\|3024769_3025474_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094817.1\|3025491_3026058_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3026054_3026345_+	YggU family protein	NA	NA	NA	NA
WP_001174735.1\|3026352_3026946_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239924.1\|3026938_3028075_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000577041.1\|3029396_3029900_+	TRAP transporter small permease	NA	NA	NA	NA
WP_000378934.1\|3030663_3031965_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_000745204.1\|3032065_3033028_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394115.1\|3033144_3034191_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984792.1\|3034366_3035086_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107556.1\|3035269_3035596_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|3035595_3036315_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_004972828.1\|3036475_3037528_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3037555_3037831_+	oxidative damage protection protein	NA	NA	NA	NA
WP_005064048.1\|3037895_3038975_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001049791.1\|3039176_3040433_+	nucleoside permease NupG	NA	NA	NA	NA
WP_005099260.1\|3040481_3042617_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234511.1\|3043014_3043722_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218804.1\|3044100_3045363_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	9.3e-78	38.3
WP_000344102.1\|3045815_3049331_+	ATP-binding protein	NA	NA	NA	NA
WP_001034110.1\|3051801_3055659_+\|protease	serine protease autotransporter toxin SigA	Q9LA58	Enterobacterial_phage	2.4e-225	38.3
WP_000291751.1\|3055705_3056287_+	hypothetical protein	NA	NA	NA	NA
WP_001045650.1\|3059101_3063220_-\|protease	serine protease autotransporter toxin Pic	Q9LA54	Enterobacteria_phage	0.0e+00	45.8
3062135:3062150	attR	NA	NA	NA	NA
WP_001189111.1\|3063947_3065456_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_001013320.1\|3067150_3067576_-	hypothetical protein	NA	NA	NA	NA
WP_000271035.1\|3067572_3067956_-	hypothetical protein	NA	NA	NA	NA
WP_094108358.1\|3068159_3069315_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.8e-67	44.7

DBSCAN-SWA_16

4341160 : 4413648

Stx2-converting_phage(20.0%)

integrase,transposase,tRNA,protease

attL 4337411:4337447|attR 4411087:4411123

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4337411:4337447	attL	NA	NA	NA	NA
WP_005063916.1\|4341160_4342762_-\|transposase	IS66-like element ISSfl3 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-146	61.6
WP_005048975.1\|4342758_4343109_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.5e-27	68.7
WP_001088287.1\|4343105_4343780_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	5.8e-10	30.1
WP_094081542.1\|4343939_4345167_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.9e-177	99.0
WP_011069602.1\|4345366_4346053_-	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	1.1e-37	45.6
WP_005065417.1\|4346200_4346884_+	YjiH family protein	NA	NA	NA	NA
WP_000211962.1\|4346880_4347342_+	membrane protein	NA	NA	NA	NA
WP_000568430.1\|4347354_4348527_+	beta-aspartyl-peptidase	NA	NA	NA	NA
WP_000340761.1\|4348591_4349503_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA
WP_000986206.1\|4349495_4349888_-	anti-adapter protein IraD	NA	NA	NA	NA
WP_120795393.1\|4349884_4349968_-	iraD leader peptide	NA	NA	NA	NA
WP_000062539.1\|4351337_4352168_+	DUF2686 family protein	NA	NA	NA	NA
WP_000844157.1\|4352308_4353082_-	Uxu operon transcriptional regulator	NA	NA	NA	NA
WP_000208167.1\|4353296_4354757_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	2.1e-49	32.2
WP_000438582.1\|4354837_4356022_-	mannonate dehydratase	NA	NA	NA	NA
WP_000558239.1\|4356361_4357705_+	gluconate permease GntP	NA	NA	NA	NA
WP_000816511.1\|4357955_4358858_-	type 1 fimbria D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_000870598.1\|4358877_4359381_-	type 1 fimbria minor subunit FimG	NA	NA	NA	NA
WP_001244836.1\|4359393_4359924_-	type 1 fimbria minor subunit FimF	NA	NA	NA	NA
WP_000066552.1\|4363412_4364138_-	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000824103.1\|4364174_4364714_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_000695529.1\|4364778_4365327_-	fimbrial protein	NA	NA	NA	NA
WP_000044711.1\|4365807_4366404_-	type 1 fimbria regulatory protein FimE	A0A2L1IV36	Escherichia_phage	3.9e-50	53.4
WP_001295734.1\|4368937_4369654_+	N-acetylneuraminic acid outer membrane channel NanC	NA	NA	NA	NA
WP_005048917.1\|4369673_4370780_+	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_000991455.1\|4370844_4371825_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	Q08JA2	Stx2-converting_phage	7.9e-101	56.2
WP_050597212.1\|4373018_4373759_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_094081518.1\|4374581_4375737_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-66	44.4
WP_071829150.1\|4376664_4376901_-	DUF2686 family protein	NA	NA	NA	NA
WP_000747032.1\|4378062_4379230_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	100.0
WP_001218324.1\|4379205_4380417_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.0e-77	42.3
WP_001299662.1\|4380895_4381915_+	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	8.4e-45	30.7
WP_005054065.1\|4382043_4383546_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.1e-82	44.3
WP_005054063.1\|4383664_4384747_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_000584114.1\|4384746_4385847_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_000397161.1\|4386113_4387625_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	8.6e-46	37.4
WP_005054057.1\|4387758_4388202_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000416415.1\|4388201_4391057_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.0e-140	36.7
WP_000079652.1\|4391110_4392307_-	DUF898 domain-containing protein	NA	NA	NA	NA
WP_001059407.1\|4392499_4393003_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000002953.1\|4393048_4393465_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_000012908.1\|4393626_4394640_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000516533.1\|4395419_4396148_-	hypothetical protein	NA	NA	NA	NA
WP_000583469.1\|4396270_4396723_-	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
WP_000256684.1\|4396867_4397461_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000500714.1\|4397531_4398245_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000230280.1\|4398376_4398772_+	RidA family protein	NA	NA	NA	NA
WP_011069607.1\|4399052_4399187_+	pyr operon leader peptide	NA	NA	NA	NA
WP_000013046.1\|4399190_4400126_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_000148585.1\|4400138_4400600_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000047539.1\|4400672_4401059_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000471841.1\|4401264_4403961_-	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	2.0e-45	27.3
WP_001387276.1\|4404101_4404155_-	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_001181311.1\|4404339_4405287_+	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	6.0e-13	21.8
WP_001299664.1\|4405405_4406827_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001344094.1\|4406876_4408532_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_000187770.1\|4408925_4411064_+	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	7.7e-266	64.3
WP_001106222.1\|4411221_4411686_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	1.1e-52	59.7
4411087:4411123	attR	NA	NA	NA	NA
WP_001162182.1\|4412295_4413648_-\|protease	metalloprotease PmbA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042980

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection