CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043625	Glutamicibacter sp. ZJUTW plasmid pQL1, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP043624	Glutamicibacter sp. ZJUTW chromosome, complete genome	1 crisprs	WYL,csa3,RT,cas3,DinG,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043624_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043624_1

2767868-2768838

Unclear

Consensus_repeat	Method
GCNGTCGCGTCAGCAGTNGCATCGGCAGT	CRT

12 spacers

cas3

The CRISPR arrays of NZ_CP043624_1

>merge|NZ_CP043624|1|2767868-2768838|CRT
GCGTCAGCGTCAGCAGTAGCGTCAGCAGTCGCGTCAGCTTCAGCGTCAGCAGTTGCATCGGCAGTAGCGTCAGCTTCAGCGTCAGCAGTAGCGTCAGCTTCAGCGTCAGCAGTTGCATCGGCAGTAGCGTCAGCAGTAGCGTCAGCGTCAGCAGTTGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTAGCGTCAGCAGTCGCGTCAGCGGTCGAATCGGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCGTCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCGTCAGCAGTTGCATCGGCAGTCGCGTCAGCAGTTGCATCGGCAGTCGCATCGGCAGTCGCGTCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTCGCGTCAGCGGTCGAATCAGCAGTCGAATCAGCAGTCGCGTCAGCGGTCGAATCAGCAGTCGCATCGGCAGTCGCGTCAGCGGTCGAATCAGCAGTCGCATCGGCAGTCGAATCAGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGAATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGAATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTAGCGTCAGCAGTCGAATCGGCAGTAGCGTCAGCAGTCGCATCGGCAGC

>NZ_CP043624|1|1|2767868-2768838|CRT
GCGTCAGCGTCAGCAGTAGCGTCAGCAGT	CGCGTCAGCTTCAGCGTCAGCAGTTGCATCGGCAGTAGCGTCAGCTTCAGCGTCAGCAGTAGCGTCA
GCTTCAGCGTCAGCAGTTGCATCGGCAGT	AGCGTCAGCAGTAGCGTCAGCGTCAGCAGTTGCATCGGCAGTCGCGTCAGCAGTCGCATCGGCAGTAGCGTCA
GCAGTCGCGTCAGCGGTCGAATCGGCAGT	CGCATCGGCAGTCGCGTCAGCAGTCGCGTCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCGTCAGCAGTTGCATCG
GCAGTCGCGTCAGCAGTTGCATCGGCAGT	CGCATCGGCAGTCGCGTCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCATCA
GCGGTCGAATCAGCAGTTGCATCGGCAGT	CGCATCAGCGGTCGAATCAGCAGTTGCATCGGCAGTCGCATCAGCGGTCGAATCAGCAGTCGCGTCA
GCGGTCGAATCAGCAGTCGAATCAGCAGT	CGCGTCAGCGGTCGAATCAGCAGTCGCATCGGCAGTCGCGTCA
GCGGTCGAATCAGCAGTCGCATCGGCAGT	CGAATCAGCAGTCGCGTCAGCAGTCGCATCGGCAGTCGCGTCA
GCAGTCGCGTCAGCAGTCGCATCGGCAGT	CGCGTCAGCAGTCGCATCGGCAGTCGCGTCA
GCAGTCGCGTCAGCAGTCGCATCGGCAGT	CGCGTCAGCAGTCGCATCGGCAGTCGAATCG
GCAGTCGCGTCAGCAGTCGCATCGGCAGT	CGCGTCAGCAGTCGCATCG
GCAGTCGCGTCAGCAGTCGCATCGGCAGT	CGCGTCAGCAGTCGCATCGGCAGTCGCGTCAGCAGTCGAATCG
GCAGTCGCGTCAGCAGTCGCATCGGCAGT	AGCGTCAGCAGTCGAATCG
GCAGTAGCGTCAGCAGTCGCATCGGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043624.1\|WP_073707914.1\|2778647_2779187_+\|DUF1697-domain-containing-protein	unknown	unknown	gnl\|CDD\|377954
NZ_CP043624.1\|WP_149597247.1\|2766659_2767463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043624.1\|WP_149597249.1\|2771168_2771834_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP043624.1\|WP_149597246.1\|2765520_2766663_-\|HTTM-domain-containing-protein	unknown	unknown	gnl\|CDD\|214802
NZ_CP043624.1\|WP_038993766.1\|2756106_2756532_-\|DoxX-family-membrane-protein	unknown	unknown	unknown
NZ_CP043624.1\|WP_168202021.1\|2762280_2762442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043624.1\|WP_143181157.1\|2771850_2772564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310737
NZ_CP043624.1\|WP_038991642.1\|2772663_2773164_-\|ferritin	unknown	unknown	gnl\|CDD\|153113
NZ_CP043624.1\|WP_149597250.1\|2776622_2778572_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP043624.1\|WP_149597242.1\|2757490_2758723_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP043624.1\|WP_149597755.1\|2762760_2763798_+\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381376
NZ_CP043624.1\|WP_149597245.1\|2764070_2765453_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143418
NZ_CP043624.1\|WP_073707925.1\|2756699_2757389_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188483
NZ_CP043624.1\|WP_149597251.1\|2779900_2781157_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP043624.1\|WP_168202073.1\|2773309_2775739_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_CP043624.1\|WP_038991639.1\|2775817_2776171_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375250
NZ_CP043624.1\|WP_038991632.1\|2779247_2779904_+\|membrane-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP043624.1\|WP_149597243.1\|2758789_2761348_-\|ATP-dependent-helicase-HrpB	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273901
NZ_CP043624.1\|WP_073707916.1\|2776215_2776626_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP043624.1\|WP_149597244.1\|2761344_2762130_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|274729

Protein	Function_ID	Function_description	E-value
NZ_CP043624.1\|WP_073707914.1\|2778647_2779187_+\|DUF1697-domain-containing-protein	gnl\|CDD\|377954	pfam08002, DUF1697, Protein of unknown function (DUF1697). This family contains many hypothetical bacterial proteins.	6.32489e-34
NZ_CP043624.1\|WP_038991642.1\|2772663_2773164_-\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	2.15155e-63
NZ_CP043624.1\|WP_149597249.1\|2771168_2771834_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.10732e-40
NZ_CP043624.1\|WP_149597246.1\|2765520_2766663_-\|HTTM-domain-containing-protein	gnl\|CDD\|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	2.7459e-32
NZ_CP043624.1\|WP_143181157.1\|2771850_2772564_-\|hypothetical-protein	gnl\|CDD\|310737	pfam06347, SH3_4, Bacterial SH3 domain. This family consists of several hypothetical bacterial proteins of unknown function. These are composed of SH3-like domains.	8.07858e-05
NZ_CP043624.1\|WP_149597250.1\|2776622_2778572_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.04926e-61
NZ_CP043624.1\|WP_149597242.1\|2757490_2758723_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	1.52718e-137
NZ_CP043624.1\|WP_149597755.1\|2762760_2763798_+\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381376	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins. Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo.	2.76709e-179
NZ_CP043624.1\|WP_149597245.1\|2764070_2765453_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP043624.1\|WP_073707925.1\|2756699_2757389_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|188483	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator. Members of this family are TetR family putative transcriptional regulators that occur in genome contexts near proteins of the mycofactocin system. These include the precursor peptide (TIGR03969), a radical SAM peptide maturase (TIGR03962), and a putative carrier protein (TIGR03967). [Regulatory functions, DNA interactions].	1.74349e-13
NZ_CP043624.1\|WP_149597251.1\|2779900_2781157_-\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02203e-89
NZ_CP043624.1\|WP_168202073.1\|2773309_2775739_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_CP043624.1\|WP_038991639.1\|2775817_2776171_+\|hypothetical-protein	gnl\|CDD\|375250	pfam17681, GCP_N_terminal, Gamma tubulin complex component N-terminal. This is the N-terminal domain found in components of the gamma-tubulin complex proteins (GCPs). Family members include spindle pole body (SBP) components such as Spc97 and Spc98 which function as the microtubule-organizing center in yeast. Furthermore, family members such as human GCP4 (Gamma-tubulin complex component 4) have been structurally elucidated. Functional studies have shown that the N-terminal domain defines the functional identity of GCPs, suggesting that all GCPs are incorporated into the helix of gamma-tubulin small complexes (gTURCs) via lateral interactions between their N-terminal domains. Thereby, they define the direct neighbors and position the GCPs within the helical wall of gTuRC. Sequence alignment of human GCPs based on the GCP4 structure helped delineate conserved regions in the N- and C-terminal domains. In addition to the conserved sequences, the N-terminal domains carry specific insertions of various sizes depending on the GCP, i.e. internal insertions or N-terminal extensions. These insertions may equally contribute to the function of individual GCPs as they have been implied in specific interactions with regulatory or structural proteins. For instance, GCP6 carries a large internal insertion phosphorylated by Plk4 and containing a domain of interaction with keratins, whereas the N-terminal extension of GCP3 interacts with the recruitment protein MOZART1.	0.00204929
NZ_CP043624.1\|WP_038991632.1\|2779247_2779904_+\|membrane-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.11604e-42
NZ_CP043624.1\|WP_149597243.1\|2758789_2761348_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP043624.1\|WP_073707916.1\|2776215_2776626_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.39895e-26
NZ_CP043624.1\|WP_149597244.1\|2761344_2762130_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	1.42526e-29

>NZ_CP043624.1|WP_149597247.1|2766659_2767463_-|hypothetical-protein
MTVSSGAAKSRKYPLWLRLVGFVCVLLTAWHIFATFLWVAPANEIRKIVPDNALRNYMMPMFGQSWSVFAPKPVDGDYSFEVRASIVDDAGEERTTAWIDPVKREMDMIHHNLFPPRAALAGDRLSSVYQNSWRKLNDNQQESVELSYFKGDDWTQRMTNRLNSQITKNSSNSKNRTADFLVAEKQASAYATQVAKAVWGDEEITRIQFRAGRQGVIPFSQRNDENAKRPKPVTIESGWRGMTVMDGQSQENFAKVFNSLEGVNAGK
>NZ_CP043624.1|WP_149597246.1|2765520_2766663_-|HTTM-domain-containing-protein
MNIASKVLTAIARIWSAFWREGPPYFLNVCKNVVATVEGWLYDQKRALYGIAVARILFGSAALGLLLTNFNTRLYTYGSGAAWSGQLEEPISSFGKSGFFDFFFSIAKNDTSVTIFFLMMMVLAVTLIIGYRARILLPIFLWLWIGFIETPFFGSDQGDNAMRIAMFLMMFTDHSARWSLDARRRARNADFSGNVFQKLWNGAHVLPAPLTALWHNLAIIALACQVFMIYVSGALFKSTGEPWQEGTAVYGPLHTMRFGPWPEISELITTMGWSVAIASIGSIILQVSFPGALLFRWTRIPVLFAMVSFHIGIAILMGLPWFSLAMVGVDAIFIRDVTWSRLANWFKKAAKDAPADVAAPEMKTVVGDKRNEELHEKVSV
>NZ_CP043624.1|WP_149597245.1|2764070_2765453_+|aldehyde-dehydrogenase-family-protein
MSAPTYKVLNPATGEVVEEFDAATDEQVEQALAAAQTAYESWQDVDINERAKIVSKVGALFAERAAELGKIMTTEMGKPLSEAVGEAEFCQEIFEYFATEGPTLAADQEIKSFSGGKAVVQKRPVGPLLGIMPWNFPLYQVARFAAPNLMLGNTIILKHAESCPRSALAIQEIMDEAGVPAGVYNNLFATHDQISTIIADPRIQGVSLTGSERAGAIIGEQAGRNLKKAVLELGGSDPFVVLDSDDVAGIAETAWGFRIDNTGQACNSNKRMIVMEDIFDDFVAELTQRASGLKAGDPMKEEEGTFAPMSSRKAAEDLHAQVQDAVSKGATLHAGGVLHDGPSAYYSPAVLSGVTKDMRAYYEELFGPVAVVYKVSSDEEATELANDTIYGLGGSVHSTDVERASKVAQKLQSGMTNVNVASAEGAEMPFGGVKRSGFGRELGPLGMDEFVNKRLFYVGE
>NZ_CP043624.1|WP_149597755.1|2762760_2763798_+|L-glyceraldehyde-3-phosphate-reductase
MPELHRPYTAAADRYEHFGYRRVGESGLRLPPLSLGLWWNFGDNRPFDTQREILRHAFDHGINHFDLANNYGPPAGSAEENFGRMMLKDFKPYRNELVISSKAGYDMWPGPHGTFGSRKYLLASCEASLKKMNLDYVDIFYSHRFDPKTPLHETIGALDALVRQGKATYVGISSYSAERTAEAAAIAKDLGTPLVIHQPSYNILNPWVEHGLLQTLEKERMGTIAFTPLAQGLLTDKYLETTDVVRQGGRRSLEAQLTDENLAKIRNLNEVAKKRGQSLAQMALAWLLREGAATSVLIGASSTKQLDENLGALENLDFSEAELAQIATIAQGDAGIDWWRTSAIS
>NZ_CP043624.1|WP_168202021.1|2762280_2762442_+|hypothetical-protein
MPEQSAAGQPDGVEEEKLRLAEEEKKHHDEHDEALVEEREDESFPASDPPSNY
>NZ_CP043624.1|WP_149597244.1|2761344_2762130_-|alpha/beta-fold-hydrolase
MINNPADGSEIFFDDDGAAGEPILFLHGSALSRSIWRGLGYTKALGENHRTIRMDLRGHGKSAKSHDVADYAMDKVVSDIHAVMDHLGIKRIHIVGYSFGARTGLHMAMHHPEQVISLIMLGGTYEITPGEIGKLFFPGYLGVLRNGDIEGFVTGQEKNGRLDPATRLAFKSNDPLALAAYYEAAETLQNIEVSELAKIRIPTLLLIGTRDQPRFDQNKIMVRTLPNARMVALPGRTHGSTLYPIEPVVSAIKSFWSGRQA
>NZ_CP043624.1|WP_149597243.1|2758789_2761348_-|ATP-dependent-helicase-HrpB
MSFAPFDLNRISSGLAFGPSREELFASVAANPAQPLVIQAPPGSGKTTIVPPTVANALHQAGLGGKVIVTQPRRVAVRAAARRLAQLDGSAVGQRVGFAVRGERKASAQTRVEFVTAGLMLRRLLADPDLGGVSAVIIDEVHERSIDTDLLLAMVNQVSELRDDFSLIVMSATLHASELSELMVRDTAAPVLSAQTAQFEVEEAFDSFAGIRNAERGLNDDYLRHVASVAVRHAAEANAASDTPVDTLVFVPGVREVERVCSQIAAAGVPVFALHSQISSKEQDRILGEPEPGSDPRIIVSTSIAESSVTVPRVHLVIDAGYAREPRRDSSRGFSGLMTVVASRSAATQRAGRAGRLGPGKVVRTLDPKSFAAAPAHSTPEIRTGDLVAAGLSLAAWGTPRGEGLAMWEAPPTGAMASDEQVLRSLDAVDEAGQITSLGKQMMKIPADPRAARALLEGSRIFGARAAADAVALLASSERIASADLNELLVAVARNSHPAHRAWKHEAQRLEKLVGAAGPSTGRQAGSAATALAGVCALAYPQWIARKTGPDEYLLASGTRATLPRGSALMHEEFLAVAEVSRTGSKAMIRRAIGIDLETAIDLLPQMHQMREVTEMSDGRITARRIESFGEIELAAHPIKATEELGMQAVASALATQGMRFFGTHEKFDALRRRMAVARGLLGEPFVRVDDQSLVDAADHWLQPVLRKIASGTNAAKVDLYSALRTLLPWEHAHDFDSLVPERLQVPSGSRISVAYPEVGESGPAVVAVKLQECFGLEDSPRLVNGKLPVQFHLLSPGGRPLAVTDDLVSFFNGPYAQVRAEMRGRYPKHPWPENPWDHVATAKTKKRLGEQ
>NZ_CP043624.1|WP_149597242.1|2757490_2758723_+|acyl-CoA-dehydrogenase
MSQLETEFEFPAGVVEPEYDLWSEDVNTDPTGVFAEVGEADNAWRAKARKFILDEVKHDIHEYWDKADYPLHLIKKLGDADLLRDGLNPEGYAEMSPLAAGLVNMEMARGDGSVSTIVGVQGGLALRSVLYCGNEEQIQKYAIPMLRGELPGSFALTEPTHGSDSVSLETRATKVEGGYRLSGEKKWIGNGSIGGVSIVWARDDEGKVRGFIVHQDAEGYKATTIENKLSLRAIWQAHIRMDNVFVPDEDVMPEAKSFKDTSRVLFATRLGVAWSAVGHATACYESAVNYAKQRVQFGRPLAASQIVQERLARMQSELATIQVLVMQAAKRETSGELTGPQASLAKYTATRTARSIAANARDLLGGNGILTSNRVARHFADVEAIHTYEGTETVQALIMGRDITGFSTFA
>NZ_CP043624.1|WP_073707925.1|2756699_2757389_+|TetR-family-transcriptional-regulator
MIASSAVPPAALDLLITQGFDATSVDELAAAAGISRSTFFRRFGSKENMVFADQEMIIAHVETTLAASSVDAITTLIDAAHVVFDQYTVNPEGAALRHKLLSSVPSLRERELVSTHRYERAFYGFLKRRDLAKTASEKSLCLGVSAGLVAIHNDHLRSWLKDAHSTDRTKLANDVRQFLNRFADLLDPDQKATPAKPAAPSVVVSVLDAAAEEKDILQAVSRALKEHGK
>NZ_CP043624.1|WP_038993766.1|2756106_2756532_-|DoxX-family-membrane-protein
MSIANAALRLVSGAFILNSGINKLRIDEASAAGLQQMAANGVPQLAELEPAVFGKAVSISEISLGSALLLPLIPSRLAGLGLGAFSGVLLASYLRTPGMTESDGIRPTADGTALAKDVWLAGIAVALIFGRKAAKKIKKAK
>NZ_CP043624.1|WP_149597249.1|2771168_2771834_+|response-regulator
MSHIRIHLADSDHFSRAGVAGVLAEAKDMEIEHVSDCMSAAVEAASELKPDVVIMESSLNGTDLLSSIREIAEQTPTTKIVVLATRYRRDEITQAYDAGSSALLSKSSISSELPSALRMLIAGYQLFAQPEDGWEPTTSIVRRATQQTAVRKLSERDRSLTRLVAAGLTNSQIARIAHISEGSVKLHLARIMEELDVTNRVQLAVIATECGLVTSADLQIV
>NZ_CP043624.1|WP_143181157.1|2771850_2772564_-|hypothetical-protein
MGFPHQSARTSSVANTHRTTASLKLRKGAGRHYVVQSHLEQGTELVLIEVKGSWAHVLVHHTYGWLPNIYLEPIPAVFDEPAVAEDDDELAEPVLSRYSLIEATHVTTATLNLRKGSGTGYPVLKVIDQGSKVRSMLQQGLWSQVQCGKLLGWVPSMYLQEIPSRPAKGGLIAVPNQRALTTIGLNARRGPGDHYSLARILPADTAVVIVARQGAWRRIDRDGEEMWIPASQLRTVY
>NZ_CP043624.1|WP_038991642.1|2772663_2773164_-|ferritin
MELTGKLAEAFSTQVTLELTAATVYRQLAVEMDVLSLPGIAGWFRAQAGEEIVHAEKFMTHMTDRSAHPKIGEQPAPTVNVNSVADAFAASLAHEQKVSEAIRELYRLAQTEGDIDSMPLLHWFIDEQVEEEATVSEILDRVKMIGNDGSGLLRLDAELGSRSSAS
>NZ_CP043624.1|WP_168202073.1|2773309_2775739_-|RNA-binding-transcriptional-accessory-protein
MHNGSVTSEQKNTAKDSATGQHIIAQLARELSSESAVAPWQIKAAIELLDSGSTVPFIARYRKEVTGMLSDSQLRLLEERLRYLRELEDRRAAVLEAIAESGKLTDQLAQAIRAASTKAELEDLYLPFKSKRRTKAQIAREAGLEPLADLLLSDPSTDPVQAAAGYLNTEAGFATDADVLSGARSIVTERVSQDVVLAGELRERLWKTGKIGASVAAGATAEGQGKYSDYLDYVADLDRLPSHRVLALLRGEREGVLNLQLAEADPRDEQALAEARSGFENAIAASLGLNVPSDAPAAKWIAQTVRLAWKARLLTRFESDLRSRLFEAAEDESVKIFAANLRDVLLAAPAGNKAVLGLDPGLRTGVKVAVVDLTGKSVETATIYPHAPANKWNESIAVLANLAKKHGTTLIAVGNGTAGRETDRLAAEVIKALGGEGISKVIVSEAGASVYSASELASQELPDMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVTASKLDRALDAVVEDCVNAVGVDVNTASPSLLARVAGVGPLLSRNIVDHRNANGPFATRKDLLKVPRLGAKAFEQCAGFLRITGGKEKLDASSVHPEAYALAKTLQASAEAQGRRLEELNPQDFATEQFGEPTIRDVIAELRRPARDPRGEFVTATLKEGVETIKDVKPGMIMEGTVSNVAAFGAFVDLGVHQDGLIHVSAMSNKFISDPREVVSSGQIVKVKVLDVDVVRKRISLTLRLDDELPVAGEVGKNSGPRERKGPRAGGSARPSQNRNGQNRNARSAQGKPAAPGNTAMAEALRRAGLGK
>NZ_CP043624.1|WP_038991639.1|2775817_2776171_+|hypothetical-protein
MGIVKVRKSAALIAISSMALLSSGCAFVEDTAADAANQLTDAASKEIVRQACAPVQDGTIDASELRVLSSIVKSVQGGGLPQELVDVLQELANSGDQAPEALQQRLVEICDEATISN
>NZ_CP043624.1|WP_073707916.1|2776215_2776626_+|RNA-binding-S4-domain-containing-protein
MVEIPTSGKVRLDAWLWAVRIYKTRSAATTACRAGHVRLNGDPVKASQAVVSGDRIRVRKDGFDRDLEVSGLISKRVGAPVAAKCYIDHTPPRERLVIPQVPIRERGAGRPTKKDRREMDRLRDSWQAPAPDADLF
>NZ_CP043624.1|WP_149597250.1|2776622_2778572_-|prolyl-oligopeptidase-family-serine-peptidase
MPTHLPFGSWPSSISAHDVAAGTKPLGGACFYGDKLIVQEGRPAEGGRITLMEYGTDGTPGAELIQAPYNVRSRVHEYGGASWMLIEGSTPAIVFVNFSDQRVYSQAAGTHNPTALTPASGNGADPQLRFAEFTEGPEDSILAIMEDLRAEPVRHIVQIPLDGSAAEDLDKIRLLSAPARFVAAPRMNPAGTRLSWISWEHPNMPWDSTELHLADFAGEGELKDTVIAGGADISVMQPEWLDDDQLAFISDASGWWNPYLYQDSSARITRLVDRPAEFAGPLWQVGTGWYLAESARTMLCSYGTGTTRLARLHADTGGLEDFDLPFTRIRPFAVREGWLLAGTSSMTQGEEITLINLDTLEHHAVTRAIAQLPDPAMLPDVEEFECKNLAGQSVHALLYRPSQEGYAGMEGELPPFVTFVHGGPTSQASPTLSATVAYYTSRGIGVVDVNYGGSTGYGREYRNRLRGAWGVVDVADTVAVVNALVAQGIADPARIGIEGGSAGGWTVLCALTFSDAFTAGISRYGVSDLVGLVQDTHDFESQYMFSLVGPYPEAAELYEKRAPINHVSKISCPVLLLQGDEDKVVPPAQSQVVADALAERGIDHAYILFEGEQHGFRKSENIIKALESSLAFYAQIFGFTTDVPAIELS
>NZ_CP043624.1|WP_073707914.1|2778647_2779187_+|DUF1697-domain-containing-protein
MTRYAVFLRGVNVGGVKVLMKDLVHLLEDAGFTDVKTLLASGNAVLSARTDDPLAVKEKCDAVLAEHYQRPIPTIVCTVKEVQRLSQPFPLPLPEPASEHHGYFTLCESAADAQALGAAIQDLAEPATHLVQDRAVAWIVRKGQSTTNPIGKLMDAQAKHRLVTTRNHNTLVKVAKILG
>NZ_CP043624.1|WP_038991632.1|2779247_2779904_+|membrane-protein
MYILIELIGIFFFAVAGSLMAARRGFDLLGSAFLGGVCGLGGGVVRDLILNQSPATFEHPVYFVPPVLAALCVYAFTPAVQKLHRLVQLFDAAGLGLFCVTGTLKALENDFNPVTAVLLGVITSVGGGLMRDVISNVTPDLFNPRDIYALAAMVGAALTAVAWHLGVMNVPVGAGIAALAFAIRVASIRFSWSVPLAAGHWHRSHPAPGSNDGPQRHY
>NZ_CP043624.1|WP_149597251.1|2779900_2781157_-|MFS-transporter
MKNQSVASPIRGRVGALLGILLLALSLRAAVVSVSPLLSRIESDIEFTEFTTGLLAMLAPIAFAVFGLLTPRLIKAFGLEKTLMISLALAVIGQVARVFMPGVYSFLALSIITLAGYGMGNVVLPPLVKKYFPDRIGMVTSGYVTMLAVGTWMAPQFSVPLANLSDWKVSIGSWAALSGIVLVPWLVQLVADRGTQRPDNPVHPSGIAQPIAKINPWKSKVAWGLAIFLAGNSAQTYVYFTWLPPYLQDRGLDELAAGNMLALFAILGLPVSLLVPLWVPRLKHPIIAVLVFTACWISGHLGIYLSPTQNTALWICLAGLGQGTFAVALLMMNLRSRTTYGSGVLSGFAQGLGYAGAAVVPMLFGVVQKATDSWGAAFSMLGGCVVVMLIGAIIINPPRTIEDDSPGTEELGKLERID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

464610 : 471737

Gordonia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149596278.1\|464610_465363_+	hypothetical protein	G9FH58	Rhodococcus_phage	4.0e-28	49.0
WP_149596279.1\|465366_465891_+	single-stranded DNA-binding protein	A0A0U4IQ14	Arthrobacter_phage	7.1e-48	77.2
WP_149596280.1\|466169_466643_+	hypothetical protein	NA	NA	NA	NA
WP_149597686.1\|467639_467897_+	hypothetical protein	A0A0K0NLG7	Gordonia_phage	3.0e-23	64.2
WP_149596281.1\|467893_468229_+	hypothetical protein	NA	NA	NA	NA
WP_149596282.1\|468225_468585_+	hypothetical protein	NA	NA	NA	NA
WP_149596283.1\|468597_469443_+	hypothetical protein	A0A1J0MCP9	Streptomyces_phage	2.8e-17	38.8
WP_149596284.1\|469439_469898_+	hypothetical protein	NA	NA	NA	NA
WP_149596285.1\|469894_470290_+	RusA family crossover junction endodeoxyribonuclease	A0A1U9WS25	Gordonia_phage	7.3e-13	43.9
WP_149596286.1\|470423_471737_+	hypothetical protein	A0A2K9VGT5	Pontimonas_phage	5.6e-41	35.5

DBSCAN-SWA_2

475650 : 493394

Arthrobacter_phage(81.25%)

capsid,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149596295.1\|475650_475998_+	HNH endonuclease	V5R8P9	Arthrobacter_phage	3.2e-28	60.0
WP_149596296.1\|476131_476437_+	hypothetical protein	X5D420	Arthrobacter_phage	1.1e-24	59.4
WP_149596297.1\|476405_477881_+\|terminase	terminase	V5R8Y1	Arthrobacter_phage	1.4e-221	76.8
WP_149596298.1\|477877_479299_+\|portal	phage portal protein	A0A068F3B8	Mycobacterium_phage	4.7e-78	39.1
WP_149596299.1\|479298_480231_+	hypothetical protein	V5RA96	Arthrobacter_phage	1.3e-81	53.5
WP_149596300.1\|480324_480822_+	DUF4355 domain-containing protein	A0A2R4AQA8	Mycobacterium_phage	5.2e-16	43.3
WP_149596301.1\|480838_481738_+\|capsid	phage major capsid protein	V5R986	Arthrobacter_phage	4.7e-23	30.6
WP_149596302.1\|481934_482384_+	hypothetical protein	V5R8Y4	Arthrobacter_phage	5.3e-36	53.4
WP_149596303.1\|482374_482704_+	hypothetical protein	V5RBC7	Arthrobacter_phage	1.3e-28	55.0
WP_149596304.1\|482742_483012_+	hypothetical protein	NA	NA	NA	NA
WP_149596305.1\|483004_483397_+	hypothetical protein	NA	NA	NA	NA
WP_149596306.1\|483457_484120_+	hypothetical protein	V5R990	Arthrobacter_phage	1.6e-68	58.6
WP_149596307.1\|484354_484696_+	hypothetical protein	NA	NA	NA	NA
WP_149596308.1\|484755_485142_+	hypothetical protein	V5RAA5	Arthrobacter_phage	2.0e-23	46.9
WP_149596309.1\|485206_488146_+	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	2.1e-16	28.4
WP_149596310.1\|488221_489079_+	hypothetical protein	V5R994	Arthrobacter_phage	8.3e-46	34.3
WP_149596311.1\|489082_490198_+	hypothetical protein	V5R8Z5	Arthrobacter_phage	1.1e-53	39.4
WP_149596312.1\|490197_491151_+	hypothetical protein	V5RBD3	Arthrobacter_phage	9.0e-33	44.0
WP_149596313.1\|491222_493394_+	hypothetical protein	D7NW65	Streptomyces_phage	1.5e-35	27.3

DBSCAN-SWA_3

727323 : 779621

Burkholderia_virus(33.33%)

tRNA,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149596413.1\|727323_728559_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149596414.1\|728872_729952_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149596415.1\|730265_730721_-	hypothetical protein	NA	NA	NA	NA
WP_168201940.1\|730893_731070_-	hypothetical protein	NA	NA	NA	NA
WP_149596416.1\|731323_732106_+	hypothetical protein	NA	NA	NA	NA
WP_149596417.1\|732524_733520_+	hypothetical protein	NA	NA	NA	NA
WP_149596419.1\|734552_735908_+	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_149596420.1\|735891_736428_+	hypothetical protein	NA	NA	NA	NA
WP_149596421.1\|737410_737905_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_149596422.1\|738123_738519_+	hypothetical protein	NA	NA	NA	NA
WP_149596423.1\|738890_739559_-	hypothetical protein	NA	NA	NA	NA
WP_149596424.1\|739954_740266_+\|transposase	transposase	NA	NA	NA	NA
WP_168201941.1\|740343_740583_+\|transposase	transposase	NA	NA	NA	NA
WP_149596425.1\|740814_741252_+\|transposase	transposase	Q8W6R2	Burkholderia_virus	4.9e-18	36.9
WP_149596426.1\|741875_743978_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_168201942.1\|744679_744823_+	hypothetical protein	NA	NA	NA	NA
WP_149596427.1\|745861_746707_+	hypothetical protein	NA	NA	NA	NA
WP_149596428.1\|746782_747397_-	flavin reductase family protein	NA	NA	NA	NA
WP_149596429.1\|747317_748358_-	methionine synthase	NA	NA	NA	NA
WP_149596430.1\|748376_749369_-	DUF1852 family protein	NA	NA	NA	NA
WP_141358105.1\|749491_750433_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149596431.1\|750843_752157_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_149596432.1\|752153_753359_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_149596433.1\|753548_753863_-	hypothetical protein	NA	NA	NA	NA
WP_073706573.1\|754254_754689_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_149596434.1\|754817_755129_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_073706575.1\|756051_756570_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_149596435.1\|756623_757088_-	hypothetical protein	NA	NA	NA	NA
WP_149596436.1\|757090_757933_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	7.7e-12	36.4
WP_149596437.1\|758325_760002_+	hypothetical protein	NA	NA	NA	NA
WP_149596438.1\|760011_761046_-	FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	2.3e-26	31.7
WP_149596439.1\|761213_762074_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA
WP_149596440.1\|762333_763722_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.0e-45	31.8
WP_149596441.1\|763851_764751_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149596442.1\|764783_765140_+	VOC family protein	NA	NA	NA	NA
WP_149596443.1\|765087_765744_-	response regulator	NA	NA	NA	NA
WP_149596444.1\|765740_766895_-	hypothetical protein	NA	NA	NA	NA
WP_168201943.1\|767004_767787_+	hypothetical protein	NA	NA	NA	NA
WP_038989932.1\|767856_768354_+	hypothetical protein	NA	NA	NA	NA
WP_149596446.1\|768453_769296_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_128469641.1\|769305_770316_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_066139887.1\|770324_770837_+	2'-5' RNA ligase family protein	NA	NA	NA	NA
WP_149596447.1\|770892_772344_-	catalase	A0A2K9L572	Tupanvirus	2.5e-87	43.1
WP_038989929.1\|772473_773256_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_066139884.1\|773255_775043_-	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_038989927.1\|775104_775548_-	succinate dehydrogenase hydrophobic membrane anchor subunit	NA	NA	NA	NA
WP_073706593.1\|775551_775932_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_149596448.1\|776211_777327_+	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA
WP_149597696.1\|777539_779621_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	1.5e-16	25.4

DBSCAN-SWA_4

3543565 : 3558432

Gordonia_phage(62.5%)

terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149597619.1\|3543565_3547180_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4P9V9	Gordonia_phage	5.2e-57	34.0
WP_149597620.1\|3547269_3547644_-	hypothetical protein	NA	NA	NA	NA
WP_149597621.1\|3547670_3548018_-	hypothetical protein	NA	NA	NA	NA
WP_149597622.1\|3548119_3548959_-	hypothetical protein	NA	NA	NA	NA
WP_149597623.1\|3549022_3549406_-	hypothetical protein	NA	NA	NA	NA
WP_149597624.1\|3549398_3549719_-	hypothetical protein	NA	NA	NA	NA
WP_149597625.1\|3549839_3550169_-	hypothetical protein	NA	NA	NA	NA
WP_149597626.1\|3550165_3550600_-	hypothetical protein	A0A1D8EW64	Mycobacterium_phage	9.5e-06	44.8
WP_149597627.1\|3550614_3550992_-	hypothetical protein	NA	NA	NA	NA
WP_149597628.1\|3550995_3551904_-	hypothetical protein	A6N200	Microbacterium_phage	9.2e-11	39.0
WP_149597629.1\|3551924_3552284_-	DUF2190 family protein	A0A142K8P7	Gordonia_phage	1.1e-12	44.7
WP_149597630.1\|3552286_3553585_-\|protease	Clp protease ClpP	A0A142K8P6	Gordonia_phage	1.4e-76	43.0
WP_168202054.1\|3553541_3554852_-	hypothetical protein	A0A2K9VGZ9	Gordonia_phage	4.6e-128	57.9
WP_149597633.1\|3554863_3556699_-	hypothetical protein	A0A0U4JKK7	Arthrobacter_phage	2.6e-121	47.5
WP_168202055.1\|3556640_3557294_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_168202056.1\|3557260_3557728_-	hypothetical protein	NA	NA	NA	NA
WP_149597635.1\|3557736_3558432_-	HNH endonuclease	A0A2K9VGY0	Gordonia_phage	8.3e-20	47.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage