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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040232 Staphylococcus aureus strain GD1706 chromosome, complete genome 12 crisprs csa3,WYL,cas3,DEDDh,DinG,TnsE_C 8 4 12 1

Results visualization

1. NZ_CP040232
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_1 292428-292679 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_2 732384-732492 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_3 894751-894833 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_4 988194-988274 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_5 1886932-1887014 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_6 1975274-1975367 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_7 2216136-2216348 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_8 2271765-2271915 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_9 2435695-2435780 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_10 2551998-2552092 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_11 2611721-2611815 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040232_12 2639438-2639548 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1053918-1053948 0 1.0
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2073022-2073052 0 1.0
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2073132-2073162 0 1.0
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2141389-2141419 0 1.0
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1033126-1033156 0 1.0
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NZ_CP040232.1 2073069-2073094 0 1.0
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 1764475-1764500 0 1.0
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 292680-292708 1 0.966
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 292680-292709 1 0.967
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 274442-274472 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 274500-274530 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 983787-983817 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1146884-1146914 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2390629-2390659 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 458841-458871 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 723852-723882 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 848434-848464 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1292227-1292257 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1292281-1292311 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1884468-1884498 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1975235-1975265 1 0.968
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2435613-2435643 1 0.968
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 983851-983876 1 0.962
NZ_CP040232_1 1.1|292455|29|NZ_CP040232|CRT 292455-292483 29 NZ_CP040232.1 2227205-2227233 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 274371-274399 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 458741-458769 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 795184-795212 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 1033199-1033227 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 1218124-1218152 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 1496610-1496638 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 1764455-1764483 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 2435686-2435714 2 0.931
NZ_CP040232_1 1.2|292511|29|NZ_CP040232|CRT 292511-292539 29 NZ_CP040232.1 2567414-2567442 2 0.931
NZ_CP040232_1 1.3|292567|29|NZ_CP040232|CRT 292567-292595 29 NZ_CP040232.1 2227205-2227233 2 0.931
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 458741-458770 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 795184-795213 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 1033199-1033228 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 1496610-1496639 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 2435686-2435715 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 274370-274399 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 1218123-1218152 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 1764454-1764483 2 0.933
NZ_CP040232_1 1.4|292623|30|NZ_CP040232|CRT 292623-292652 30 NZ_CP040232.1 2567413-2567442 2 0.933
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 903758-903788 2 0.935
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1500922-1500952 2 0.935
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 1547012-1547042 2 0.935
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 2836327-2836357 2 0.935
NZ_CP040232_3 3.1|894777|31|NZ_CP040232|CRISPRCasFinder 894777-894807 31 NZ_CP040232.1 987895-987925 2 0.935
NZ_CP040232_4 4.1|988219|31|NZ_CP040232|CRISPRCasFinder 988219-988249 31 NZ_CP040232.1 889174-889204 2 0.935
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 987996-988021 2 0.923
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 1032931-1032956 2 0.923
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 2227247-2227272 2 0.923
NZ_CP040232_9 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder 2435725-2435750 26 NZ_CP040232.1 2567434-2567459 2 0.923

1. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1053918-1053948, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

2. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2073022-2073052, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

3. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2073132-2073162, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2141389-2141419, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1033126-1033156, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to position: 2073069-2073094, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

7. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 1764475-1764500, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

8. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 292680-292708, mismatch: 1, identity: 0.966

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctggcgaaaagtcagcttacaataatg	Protospacer
****.************************

9. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 292680-292709, mismatch: 1, identity: 0.967

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctggcgaaaagtcagcttacaataatgt	Protospacer
****.*************************

10. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 274442-274472, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

11. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 274500-274530, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

12. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 983787-983817, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

13. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1146884-1146914, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

14. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2390629-2390659, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 458841-458871, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

16. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 723852-723882, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

17. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 848434-848464, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

18. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1292227-1292257, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

19. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1292281-1292311, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

20. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1884468-1884498, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

21. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1975235-1975265, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

22. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2435613-2435643, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

23. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 983851-983876, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctgacgg	Protospacer
**********************.***

24. spacer 1.1|292455|29|NZ_CP040232|CRT matches to position: 2227205-2227233, mismatch: 2, identity: 0.931

gaaattggaacagcaatttctacagacaa	CRISPR spacer
gaaattggaacaccaattcctacagacaa	Protospacer
************ *****.**********

25. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 274371-274399, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
****.***.********************

26. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 458741-458769, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

27. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 795184-795212, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

28. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 1033199-1033227, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

29. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 1218124-1218152, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

30. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 1496610-1496638, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

31. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 1764455-1764483, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
****.***.********************

32. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 2435686-2435714, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
****..***********************

33. spacer 1.2|292511|29|NZ_CP040232|CRT matches to position: 2567414-2567442, mismatch: 2, identity: 0.931

agctagcgaaaagtcagcttacaataatg	CRISPR spacer
agctggcggaaagtcagcttacaataatg	Protospacer
****.***.********************

34. spacer 1.3|292567|29|NZ_CP040232|CRT matches to position: 2227205-2227233, mismatch: 2, identity: 0.931

gaaattggaacagcaatttctacagacaa	CRISPR spacer
gaaattggaacaccaattcctacagacaa	Protospacer
************ *****.**********

35. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 458741-458770, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

36. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 795184-795213, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

37. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 1033199-1033228, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

38. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 1496610-1496639, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

39. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 2435686-2435715, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

40. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 274370-274399, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctggcggaaagtcagcttacaataatgt	Protospacer
****.***.*********************

41. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 1218123-1218152, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgt	Protospacer
****..************************

42. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 1764454-1764483, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctggcggaaagtcagcttacaataatgt	Protospacer
****.***.*********************

43. spacer 1.4|292623|30|NZ_CP040232|CRT matches to position: 2567413-2567442, mismatch: 2, identity: 0.933

agctagcgaaaagtcagcttacaataatgt	CRISPR spacer
agctggcggaaagtcagcttacaataatgt	Protospacer
****.***.*********************

44. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 903758-903788, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

45. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1500922-1500952, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

46. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 1547012-1547042, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

47. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 2836327-2836357, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

48. spacer 3.1|894777|31|NZ_CP040232|CRISPRCasFinder matches to position: 987895-987925, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

49. spacer 4.1|988219|31|NZ_CP040232|CRISPRCasFinder matches to position: 889174-889204, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

50. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 987996-988021, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagcaggcgg	Protospacer
**************** *** *****

51. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 1032931-1032956, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggtgg	Protospacer
*************.*********.**

52. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 2227247-2227272, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

53. spacer 9.1|2435725|26|NZ_CP040232|CRISPRCasFinder matches to position: 2567434-2567459, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NZ_CP053838 Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence 17379-17404 4 0.846
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NZ_CP017210 Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence 2023-2048 4 0.846
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NC_008443 Borrelia burgdorferi strain Ip21 plasmid, complete sequence 5652-5677 5 0.808
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NC_010631 Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence 3460-3485 5 0.808
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 NC_010632 Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence 13739-13764 5 0.808
NZ_CP040232_6 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder 1975308-1975333 26 MK448662 Streptococcus satellite phage Javan97, complete genome 6198-6223 6 0.769
NZ_CP040232_1 1.1|292455|29|NZ_CP040232|CRT 292455-292483 29 NZ_CP047617 Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence 79395-79423 8 0.724
NZ_CP040232_1 1.3|292567|29|NZ_CP040232|CRT 292567-292595 29 NZ_CP047617 Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence 79395-79423 8 0.724
NZ_CP040232_1 1.1|292455|29|NZ_CP040232|CRT 292455-292483 29 NZ_CP038259 Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence 11151-11179 9 0.69
NZ_CP040232_1 1.3|292567|29|NZ_CP040232|CRT 292567-292595 29 NZ_CP038259 Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence 11151-11179 9 0.69
NZ_CP040232_7 7.1|2216183|34|NZ_CP040232|CRISPRCasFinder 2216183-2216216 34 NC_027332 Acinetobacter phage YMC13/03/R2096, complete genome 68639-68672 11 0.676
NZ_CP040232_7 7.1|2216183|34|NZ_CP040232|CRISPRCasFinder 2216183-2216216 34 KY000079 Acinetobacter phage AM24, complete genome 74925-74958 11 0.676

1. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

2. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .**** 

3. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* ** 

4. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

5. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

6. spacer 6.1|1975308|26|NZ_CP040232|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* * 

7. spacer 1.1|292455|29|NZ_CP040232|CRT matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaattggaacagcaatttctacagacaa	CRISPR spacer
tcaactggaacagcaatttctacattatc	Protospacer
  **.*******************     

8. spacer 1.3|292567|29|NZ_CP040232|CRT matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 8, identity: 0.724

gaaattggaacagcaatttctacagacaa	CRISPR spacer
tcaactggaacagcaatttctacattatc	Protospacer
  **.*******************     

9. spacer 1.1|292455|29|NZ_CP040232|CRT matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 9, identity: 0.69

gaaattggaacagcaatttctacagacaa	CRISPR spacer
tctgctggaacagcaatttctccagaggt	Protospacer
   ..**************** **** . 

10. spacer 1.3|292567|29|NZ_CP040232|CRT matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 9, identity: 0.69

gaaattggaacagcaatttctacagacaa	CRISPR spacer
tctgctggaacagcaatttctccagaggt	Protospacer
   ..**************** **** . 

11. spacer 7.1|2216183|34|NZ_CP040232|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 7.1|2216183|34|NZ_CP040232|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 253569 : 364869 99 Staphylococcus_phage(17.86%) transposase,protease,holin NA
DBSCAN-SWA_2 392244 : 437627 65 Staphylococcus_phage(92.19%) integrase,capsid,head,transposase,tail,plate,holin,protease,portal,terminase attL 392134:392151|attR 438161:438178
DBSCAN-SWA_3 826625 : 834445 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 846415 : 860731 16 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 913489 : 962875 70 Staphylococcus_phage(73.91%) integrase,capsid,head,tail,plate,holin,portal,terminase attL 916783:916799|attR 960796:960812
DBSCAN-SWA_6 1076582 : 1128596 53 Streptococcus_phage(40.0%) protease,holin,bacteriocin,tRNA NA
DBSCAN-SWA_7 1148379 : 1156852 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1163424 : 1215960 67 Staphylococcus_phage(89.47%) integrase,capsid,head,transposase,tail,holin,protease,portal,terminase attL 1169556:1169572|attR 1211284:1211300
DBSCAN-SWA_9 1458080 : 1464838 9 Staphylococcus_phage(83.33%) head NA
DBSCAN-SWA_10 1736073 : 1744385 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_11 1813809 : 1822852 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_12 1946576 : 1994421 48 Staphylococcus_phage(91.89%) transposase,protease,tRNA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP040232.1|WP_000384171.1|1971367_1971592_-|hypothetical-protein 1971367_1971592_- 74 aa aa NA NA NA 1946576-1994421 yes