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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP026336 Xanthomonas citri pv. glycines strain EB08 plasmid pXAG2.EB08, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP026335 Xanthomonas citri pv. glycines strain EB08 plasmid pXAG27.EB08, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP026334 Xanthomonas citri pv. glycines strain EB08 chromosome, complete genome 4 crisprs WYL,DEDDh,csa3,RT,cas3,DinG 0 6 5 0

Results visualization

1. NZ_CP026334
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026334_1 27336-27690 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026334_2 309847-310031 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026334_3 2399580-2399674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP026334_4 5287549-5287625 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP026334_4 4.1|5287575|25|NZ_CP026334|CRISPRCasFinder 5287575-5287599 25 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 281138-281162 5 0.8
NZ_CP026334_1 1.11|27469|31|NZ_CP026334|CRISPRCasFinder 27469-27499 31 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 934481-934511 6 0.806
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1614842-1614875 6 0.824
NZ_CP026334_1 1.11|27469|31|NZ_CP026334|CRISPRCasFinder 27469-27499 31 NZ_CP015279 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence 150331-150361 7 0.774
NZ_CP026334_1 1.11|27469|31|NZ_CP026334|CRISPRCasFinder 27469-27499 31 NZ_CP015280 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence 81610-81640 7 0.774
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 MH271303 Microbacterium phage MementoMori, complete genome 20739-20772 8 0.765
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 MN813682 Microbacterium phage Matzah, complete genome 21015-21048 8 0.765
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 MK937591 Microbacterium phage Cinna, complete genome 21039-21072 8 0.765
NZ_CP026334_1 1.14|27637|31|NZ_CP026334|CRISPRCasFinder 27637-27667 31 NZ_CP050094 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence 380719-380749 8 0.742
NZ_CP026334_1 1.5|27574|38|NZ_CP026334|CRT 27574-27611 38 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1614844-1614881 10 0.737
NZ_CP026334_1 1.6|27631|35|NZ_CP026334|CRT 27631-27665 35 NZ_CP049358 Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence 138975-139009 10 0.714
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 NC_016588 Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence 72444-72477 11 0.676
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 NZ_AP012556 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence 22147-22180 12 0.647
NZ_CP026334_1 1.13|27580|34|NZ_CP026334|CRISPRCasFinder 27580-27613 34 NZ_CP023152 Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence 116465-116498 12 0.647

1. spacer 4.1|5287575|25|NZ_CP026334|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 5, identity: 0.8

agaagccgatgtggcgtcggacgac	CRISPR spacer
gttcgccgatgcggcgtcggacgac	Protospacer
.   *******.*************

2. spacer 1.11|27469|31|NZ_CP026334|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * ** 

3. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .* 

4. spacer 1.11|27469|31|NZ_CP026334|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

5. spacer 1.11|27469|31|NZ_CP026334|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

6. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

7. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

8. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

9. spacer 1.14|27637|31|NZ_CP026334|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

10. spacer 1.5|27574|38|NZ_CP026334|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

agcatcctcgccgagcgcggcagccagatcagtggcgg	CRISPR spacer
atgttcttcgtcgagcgcggcagccagatcatggggct	Protospacer
*   **.***.********************  **   

11. spacer 1.6|27631|35|NZ_CP026334|CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

agcatcgggctggtgggaaccgagctcggcaaggg	CRISPR spacer
agcatcgggcgggtgggcaccgagccgaccatcat	Protospacer
********** ****** *******. . **  . 

12. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * .. 

13. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

14. spacer 1.13|27580|34|NZ_CP026334|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1231918 : 1303826 77 Stenotrophomonas_phage(57.5%) integrase,portal,capsid,protease,head,tail,plate,terminase,holin attL 1225191:1225208|attR 1264600:1264617
DBSCAN-SWA_2 2035270 : 2046107 13 Micromonas_pusilla_virus(16.67%) tRNA NA
DBSCAN-SWA_3 2066187 : 2087373 21 Xanthomonas_phage(21.43%) head,portal,capsid,tail NA
DBSCAN-SWA_4 4385705 : 4397475 11 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_5 4609931 : 4664411 66 Stenotrophomonas_phage(66.67%) portal,integrase,capsid,head,tail,plate,terminase,tRNA,holin attL 4632223:4632239|attR 4649437:4649453
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage