CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043953	Acinetobacter baumannii strain K09-14 chromosome, complete genome	2 crisprs	cas3,DEDDh,WYL,csa3	0	0	4	0
NZ_CP043954	Acinetobacter baumannii strain K09-14 plasmid pK09-14, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043953_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043953_1

661896-661980

Orphan

Consensus_repeat	Method
AAAAGATTGATAATCTTTTAATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043953_1

>merge|NZ_CP043953|1|661896-661980|CRISPRCasFinder
AAAAGATTGATAATCTTTTAATTTTGGCACAAGACAAGCAGTGAAACTGCGCGTAGAGTAAAGAAGATTGATAATCTTTTAATTT

>NZ_CP043953|1|1|661896-661980|CRISPRCasFinder
AAAAGATTGATAATCTTTTAATTT	TGGCACAAGACAAGCAGTGAAACTGCGCGTAGAGTAA
AGAAGATTGATAATCTTTTAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043953.1\|WP_001016582.1\|659019_660156_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP043953.1\|WP_000101096.1\|650771_651134_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP043953.1\|WP_071210567.1\|654002_658523_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|223716
NZ_CP043953.1\|WP_001984826.1\|660281_660425_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP043953.1\|WP_045543736.1\|664540_667087_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|99797
NZ_CP043953.1\|WP_071210570.1\|651194_651731_+\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP043953.1\|WP_000490937.1\|673065_673206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_079395632.1\|667920_670095_-\|TIGR01666-family-membrane-protein	unknown	unknown	gnl\|CDD\|130727
NZ_CP043953.1\|WP_002124206.1\|660523_661432_-\|DUF1853-family-protein	unknown	unknown	gnl\|CDD\|378094
NZ_CP043953.1\|WP_001981151.1\|649443_650043_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_150204938.1\|670222_671437_+\|Bcr/CflA-family-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP043953.1\|WP_000077301.1\|662055_662559_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP043953.1\|WP_002010643.1\|672679_672883_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_071210569.1\|651777_653856_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP043953.1\|WP_000125649.1\|667244_667820_-\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|379303
NZ_CP043953.1\|WP_000389061.1\|650364_650748_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP043953.1\|WP_002128416.1\|658555_658984_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_001047593.1\|671464_672169_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP043953.1\|WP_001005337.1\|673305_674781_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP043953.1\|WP_045543735.1\|663628_664414_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750

Protein	Function_ID	Function_description	E-value
NZ_CP043953.1\|WP_001016582.1\|659019_660156_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP043953.1\|WP_000101096.1\|650771_651134_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.79368e-36
NZ_CP043953.1\|WP_071210567.1\|654002_658523_+\|Hpt-domain-containing-protein	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	3.12777e-118
NZ_CP043953.1\|WP_001984826.1\|660281_660425_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	4.44613e-07
NZ_CP043953.1\|WP_045543736.1\|664540_667087_-\|PepSY-domain-containing-protein	gnl\|CDD\|99797	cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.35411e-132
NZ_CP043953.1\|WP_071210570.1\|651194_651731_+\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	6.05215e-31
NZ_CP043953.1\|WP_079395632.1\|667920_670095_-\|TIGR01666-family-membrane-protein	gnl\|CDD\|130727	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are >700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS. [Cell envelope, Other].	0
NZ_CP043953.1\|WP_002124206.1\|660523_661432_-\|DUF1853-family-protein	gnl\|CDD\|378094	pfam08907, DUF1853, Domain of unknown function (DUF1853). This family of proteins are functionally uncharacterized.	3.89743e-41
NZ_CP043953.1\|WP_150204938.1\|670222_671437_+\|Bcr/CflA-family-efflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.06993e-94
NZ_CP043953.1\|WP_000077301.1\|662055_662559_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.56335e-26
NZ_CP043953.1\|WP_045543735.1\|663628_664414_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.00071e-39
NZ_CP043953.1\|WP_001047593.1\|671464_672169_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	1.03168e-34
NZ_CP043953.1\|WP_000389061.1\|650364_650748_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.27194e-36
NZ_CP043953.1\|WP_000125649.1\|667244_667820_-\|SdpI-family-protein	gnl\|CDD\|379303	pfam13630, SdpI, SdpI/YfhL protein family. This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.	0.00838382
NZ_CP043953.1\|WP_001005337.1\|673305_674781_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP043953.1\|WP_071210569.1\|651777_653856_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	8.08888e-71

>NZ_CP043953.1|WP_002124206.1|660523_661432_-|DUF1853-family-protein
MNIASIKTSYFEPWLQFSHPMVRQLAFTIASPNLLSQLPCSLTIRHSFQLHTDKNWEQHFQNYFPRLKQLDEAPEPLLQFMSRLKSTRLGLRFENLLWFWLQEDQYHPYQLLGHSIQKIDGAKTLGELDFLVLNQNTQEIEHWEVALKYYLGEGQLNLEQWIGLNRQDTLSKKLYHFTDKQFQFSEALGFKVQQRFAVLKGQLYLPLNLPQEQPIPEWVNLKRRLGTWGTEIPKSDFYRLERHEWLCPHQKASSNTAYWWTDGLYCQNINESRFYMFRHPALLSLKPSLIKNNGVLQETTSL
>NZ_CP043953.1|WP_001984826.1|660281_660425_-|entericidin-A/B-family-lipoprotein
MMKKVLVASVMVAFVLTGCNTFKGFGQDVSKAGDAVTNTAQKTENKM
>NZ_CP043953.1|WP_001016582.1|659019_660156_-|succinyl-diaminopimelate-desuccinylase
MNHSDTLSLSLELLQQPSVTPIDHTCQTIMANRLAKVGFHIEPMRFGDVDNLWARRGTEGPVFCFAGHTDVVPTGRLDAWNSDPFAPEIRDGKLYGRGSADMKTALAAMVVASERFVAKHPNHKGSIAFLITSDEEGPAVNGTVKVIETLEKRNEKITWCLVGEPSSTHKLGDIVKNGRRGSLNAVLKVQGKQGHVAYPHLARNPIHEASPALAELCQTVWDNGNEYFPATSFQISNIHAGTGATNVIPGALEVTFNFRYSTEVTAEQLKQRVHEILDKHGLQYEIVWNLSGLPFLTPVGELVNAAQTAILNVTGTETELSTSGGTSDGRFIAPTGAQVLELGVLNATIHQINEHVDVHDLDPLTDIYEQILENLLAQ
>NZ_CP043953.1|WP_002128416.1|658555_658984_+|hypothetical-protein
MDQQELQHLITVSTGFIDAYIIECNDQVPMLLPQNIVLSAMDVKNGVKHIEWHDVKLPVYSVHNTIDQHAVALVIEGEDISQRFALICKTMPVSTRLRISEIVDEMDEHEAEQHPAVFKYVRMQDQRYYIPNLEYIEKLLGL
>NZ_CP043953.1|WP_071210567.1|654002_658523_+|Hpt-domain-containing-protein
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFIEEIEEIFVDLQPLINKWMQSENIATLTEIRRHFHTLKGSGRMIGAKSSAELAWTVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRPLILLGQQLQQQQSLEPALEELLQLSNTLTAETVTGLELDYIEQDSLAEPIIQATHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQYDSYNALIRALHTLRGSSAMAQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYREFVRDSLELLSRYSSSEQLEARLQQFNQFWDAYVEQHGDRTDPLMPSHGLVSQLLQLDVSELLDAELDFEKGIRNEFPDYLERLSEQADLLLQHTHSQAMLGLHEYTSHLKESYEVLLDKPALLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGVVKQHQSILEELKLYTQYIPDLSNDLPQQDSTSFEPISNIEPEPEVVATVENFSDSADWAVLGQSVQQDRQYISSTQVNRNFDADLLDIFLEEAEELLEGIDTDLNIWVGEQENFAALNNLMRYLHTLKGGANMVQATYLGLIAHELESIYERLIQKQLVATSDLIDFIRLVQDDLADRLQIMREQQLDYAAPYTINALKRAGQNSNFQPVSVVEAFDAESEVFSEQEVISEIIIDEIPVELEPALAKLETHHDQVFDTAVTELATPVEVITSVTSQENEVAADEQDIEAVVEQTFLEEATELLEMAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAYQLENAFEQFALHHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQIPTKLTRADLFNSEPVMTFIQGDGTEPPPMMGAWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKHGIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSDKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRAQRQQANKPETGRIELNIQRQGTDVVVVFSDDGQGIDVEKVRQKALLAGLIKPEQDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLDVVQSDIKSLGGHVSVESVYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIIRVSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQPIPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRHKQLSEAVYRQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVAFESEVKS
>NZ_CP043953.1|WP_071210569.1|651777_653856_+|methyl-accepting-chemotaxis-protein
MGFKLKKKSGNRGATGKSSVNFIAKIQSKIEQFASLFGESEKSKPILYAALLCLVCALISLAYLFYNVPRHNQLIRSLGELRLLSQTISKQATEATESGSQEAITKLQQSKKDFDENLLEIENIHGKSTDEYQKAEKIWGEVSKNIDLISSHQRVLNQLYDTNISISETVPEIQAEYNLMVDQMARQGLPSSQVIIAKNQVFIAERILRSINSVLSGTDGNVSTSDFSVDIETFGTYLNAELNGNAELGVDRIADPALRESLESIKSEYDKVLKSAAATVLKNGSQIVNVRQASSQIFSKSDVMLESLGHLSDVARKNWLTLFLGAVLILSLGGLIFSVFKLITLRSVMDKQRVARLQEEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASESAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMAGEAGRGFAVVADEVQRLAERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEIQKVSGDLAKLIASISDAAKLQSASASHIATTMTVVQEITSQTTTATFDTARSVSELANMAESLRESVTDFKLPD
>NZ_CP043953.1|WP_071210570.1|651194_651731_+|purine-binding-chemotaxis-protein-CheW
MAANGFIELLRLSKRGNKNYASVQNEAQRWSGIAFEMRGQYFVAPLGEVSEVIYPPKYTPVPNTQSWIKGLANIRGRLLSVSDLAHFISGQRSSFSSTQKVLCISHHDQYVGLVVDQVLGIQHFNKKSFFSQSSDLEENLKEYCQGYFHQHNQHWHVFLFSRLLQNPHYMNASTKFIN
>NZ_CP043953.1|WP_000101096.1|650771_651134_+|response-regulator
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVIVSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN
>NZ_CP043953.1|WP_000389061.1|650364_650748_+|response-regulator
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQNIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS
>NZ_CP043953.1|WP_001981151.1|649443_650043_-|hypothetical-protein
MSVSIGIASCGALFFSSPTLAANAAPKAVWYRYYDQHGIANISTSVTPAHIRYGYEALDQNMQVIKRNHPYNSEADLNQSSQRALSARYREEDNKLKRAYSNSKTATIKRDQALLAIKKQINYQQDQLSQLQQDKILFKRQEMEYFRKGEQVPERHKTLIENNLMNINKVKQTLEILSKTYNRTNKDYENIIERLKKLE
>NZ_CP043953.1|WP_000077301.1|662055_662559_+|L,D-transpeptidase
MSQFKLEDADILIDLANQTLSLPKHNKFYVVSTGKNGIGEQENTGKTPRGWHRVAKKFGMQSPKNAVFIARQPTGEVYSSELAAQFPERDWILSRILWLDGLEEGFNKGEGHDTMQRYIYIHGTPDKEPMGVPMSHGCIRMRNEEIIELFDLVSEDALVYLSEQSLT
>NZ_CP043953.1|WP_045543735.1|663628_664414_-|YdcF-family-protein
MQVSKWIRIFLAVIGSILFLDGLFLAFLNKIHVGTLVPLVLGAFFCLYALFYYHLERFFFYHYRLHTLWRFGWLCFWIWLISLGYFFNFIKENKDASQNLPAVKAIIVLGSGVENGQPSAILAKRLDTAAPVALSQPQTKVILTGGLDFSEKEPEALVMSRYLEQHFHIAKDRMILEDKSTSTELNLKNSKPLLEQAHISVNQPIAIVTSDFHTPRAAAIAKKQGYTQVYMVAAETPLITRYNAWLREYFAYASGWLLNEY
>NZ_CP043953.1|WP_045543736.1|664540_667087_-|PepSY-domain-containing-protein
MFKKFLFQIHWFLGISAGLILSIMGVTGAIYSYDQQILKWVNTDSYVVQVQSSPKLTPAQLYQHFTTIQPEIKINSITIAKDPTASSVVNIEKEGERRGYNIMVNPYTAQVLPEVQGRKLLLLIQQIHRNLTAGEFGKQITGACALMLIYFVLSGLYLRWPKKHSARQWLAVKPKLKGRNFIWDLHAVVGTWVIVFYLLFACTGLYWSYDWWRSGMFKVLGVEQPKMQGHGGSGRNKDQLPKIQLDNAQLITALNQTWSGFNNQIGRDYSTLTVNLPKKDDGKIELSFVDATPQHERARNQAVYNYKTANIEKMELYEDKKLNQKIMSSMLPVHRGSFFGPVYQFVAMLASLAMPLFFVTGWMLYLKRRKQKKLTQAARQSLAGHYIDQNAKPWLITYATQTGVAEQLAWSTATSLQEAHQPVQVKSVQQLTEVDLQQHEQILFVISTYGTGEAPDLASNFAKKLLKTNLKLQHIKYAVLALGSKEYPDTYCSFGHTVDEWLKNNGAKALFDIIEVDNANPADIQNWNQALVKATKLDLHAVNIEKVFDNWTLQQRDLLNPNSLGQPAYNIELTASHEAVWQAGDIAEIQPGNSPERINKFLQHHHILKNAVVDSLQVSIEKALWNKDLTGEIEPFANLDHLLEQLPTLPTREYSIASIPSQQVLRLVVRQQYDESGDLGLGSGWLTQHTEINQNVALRIRTNESFHLIDDNRPIICIGNGTGIAGLMSLLHTRTRHNYTENWLIFGERQRAHDFFYASTIEAWQTMGMLKRLDLAFSRDQEQRVYVQDIIRQNAAELVNWIERGAVLYVCGSIDGMASGVDQALIHILGEEQVDELRQQGRYRRDVY
>NZ_CP043953.1|WP_000125649.1|667244_667820_-|SdpI-family-protein
MTAKTLYAYTLQPVPYEVSEAEQRNAQLLIWRSTNKISTKIWAIMGVILALAILGLIFIKNYSTVICWVAIVCVVLYYLGRKYGLEWYVKRKMNEFPVQEIKGIRLGVQPHGIVMRQQMGLQEGVGTIGWKNIYEWYNTPDFILVNFKVKDPKGQEQQGAYILPKRMDSKNFSFNTIRKHLKESVGEPKTL
>NZ_CP043953.1|WP_079395632.1|667920_670095_-|TIGR01666-family-membrane-protein
MKSWFKRLKRATYNTSFMYNVRMLIAFSGTAFVPYFLGHQLATIPLTLGVVAAGLSDIDDRFSVRIMNLIYTYIGFFITAASVQLLFPYPMLFALGLIASCIGWILLGSLGRRYATISYGCLVVSVYTMLGVHLFDQWYIQPALLVAGAAWYGLIATISFLLFPVRQLQDKLAASYASLGDFLFAKSNLFDVDMTPASYQQSMIDLSLENGKLITIFNDLKTALLTRLKGDRGQKGTRRSLHYYFVAQDIHERADSAHIDYQKLAKIFQHSDILFRFQRILAIQGKACQELNECILQRKPYIHNKRFKQSFENLRLSLVKLRDDQQYDLLWVNALFALYRNLKSIDSQLLNLETEQHIQSDKVKQAENQLKDDDLKGWNDIIVRIKQNLTPESVLFRHAIRVSIVLFIGYVFIQMTHIEYGYWIMLTALFVSQPNFNATKRRLRLRIVGTLVGIIVGLSIVFLVPSVEGQLVMLILSGVLFFELRSKQYAQATAFITILALINFNLDGSAVAAAIPRFVDTLIGCALAWFGVTFIWPDWKFRRLPRSIRRSLQAQCNYLAEVVKQYHEGHNHALNYRIVRRAAHNTDAEVASLISTLATEPDFDPTRKSDIFEFLCLNHTFLSYIAALGAHREKIQDQAVLNVLDQALDDIQGALLRDEMPDLTAQNMLQTIRQRLSQNDEDDQKSLIILQQLSLMLSVLNRFSMLKQRLSHDLDNDASELASL
>NZ_CP043953.1|WP_150204938.1|670222_671437_+|Bcr/CflA-family-efflux-MFS-transporter
MSEQTAQRQYSIGWIMLLALLTALGPLSIDMYLPALPQMAHDFGVSTQMVANTLPAYFFGLAIGQLVYGPLSDRIGRKKPLYFGLALYAVASLFCVLATNEWSLIAARILQALGGCVGVVMARAAIRDRLDVQGSAQAFSSMMIVMGLAPILAPMIGAWILIWFPWQAIFIALSIVGAICWLCVHFFFKETLAVDKRLKLSLYQVATLYGAIFKDASFRLPMFAGCLTGAALFCYISSAPAVFMDQYGLNQQEFAYVFGLNAFGIMLMSSLNKHLTTRIEITKRLKAGSMVQVTGASIVLIAGLISAAPLWLVMLGLFLAISGIGLTGPNAMALAMSKQGARAGTASAIMGSMQFACGLLGGVLLNFLIWSASLNMGVMMVLFTLSGFIVVLKAIRQAKSQSLS
>NZ_CP043953.1|WP_001047593.1|671464_672169_-|nitroreductase
MNLEQVRLVDEAITSRHSVRAFLSTPIEPEVIKDILRVASRAPSGTNTQPWKVYVVTGHKRDEMVERVCAAQIEVSKNPELAEQYKETFAYYPEKWVSPFIDRRRENGWGLYGLLDIKKGEKEKMAAQQLRNFKLFDAPVGIFFTVNKAMGIGSKMDIAMMIQNVMVAAKARGLDTCPQAAWNHFHPLVLDILGAADDEELVCAIALGHADPEHIVNTFITPREPVENFAVFLD
>NZ_CP043953.1|WP_002010643.1|672679_672883_+|hypothetical-protein
MSLPLINKQFMKQGLAITIATMKMNVTHATTEPQEIQQLGTDLNALFFNEKEKGTDSRVMTMACYSL
>NZ_CP043953.1|WP_000490937.1|673065_673206_+|hypothetical-protein
MFSGAMNLFYLKGAFSHVTFKGLVLGMMLLKLVTVIAIQVTLKVFP
>NZ_CP043953.1|WP_001005337.1|673305_674781_+|alanine:cation-symporter-family-protein
MNEQLNATLMSWVQFFNEPLWDFLVIFLLAVGIFYTVLTGAVQIRMFLQSIRVMKSSRTEGEDEHGLTPFQAFVTGLASRVGVGNIAGVAIAIAIGGPGAVFWMWVTAVLGMSSAFIESTLAQLFKVRDSNSKQFRGGPAYYITQGLRSKTFGVIFALALIFTYGFVFNSVQINAIANASSHAWGWDKANLIAHLGGVDLEISWVGLALVVMVALAIFGGIKRIAKFAEMFVPLKAGLYLSVALYIALSNYAILPDVLKLIVTEAFHFNAAAGGFFGAAVSMAMMQGIKRGLFSNEAGMGSAPNAAAASDVKHPVNQGLVQMLGVFVDTFIVCTSTAIIILVSGVYQDAGFVGVELTQRALETQVGHWGADFLAVLLFLFCYSAVLGNYAYAESNVQFINNNPKVMFIFRIFVLVMVYFGAIGSVPLVWSMADLFMGIMATINLVAILLLTPMARTLLKDYRAQLKQGIKEPVFKINKYPELKKKVDSDIW

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Crispr_ID: NZ_CP043953_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043953_2

2363988-2364073

Orphan

Consensus_repeat	Method
CCAGCTTCACGAGCCTCTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043953_2

>merge|NZ_CP043953|2|2363988-2364073|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGAGGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGGCCAGCTTCACGAGCTTCTTCTGA

>NZ_CP043953|2|2|2363988-2364073|CRISPRCasFinder
CCAGCTTCACGAGCCTCTTCTGA	GGTAAATTCATGTGCGTTACCACTGGCATGTGCAGCACGG
CCAGCTTCACGAGCTTCTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043953.1\|WP_150205098.1\|2353767_2354064_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP043953.1\|WP_000885235.1\|2361109_2361721_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP043953.1\|WP_150205275.1\|2355163_2358628_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP043953.1\|WP_000432325.1\|2365259_2366138_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187613
NZ_CP043953.1\|WP_000937465.1\|2352835_2353471_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP043953.1\|WP_150205101.1\|2368392_2369802_-\|iron-containing-redox-enzyme-family-protein	unknown	unknown	gnl\|CDD\|379634
NZ_CP043953.1\|WP_014206469.1\|2353559_2353673_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_001124839.1\|2361793_2362405_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NZ_CP043953.1\|WP_045544265.1\|2364704_2365118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_000376213.1\|2360497_2360953_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP043953.1\|WP_000251637.1\|2372617_2372761_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_000498474.1\|2371610_2371832_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_000482091.1\|2370117_2370597_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|224463
NZ_CP043953.1\|WP_085941324.1\|2366193_2368338_-\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
NZ_CP043953.1\|WP_150205100.1\|2358793_2360440_+\|allantoin-permease	unknown	unknown	gnl\|CDD\|224374
NZ_CP043953.1\|WP_045544267.1\|2371208_2371526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_001136759.1\|2371919_2372348_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_000795915.1\|2362687_2362924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043953.1\|WP_000108365.1\|2370881_2371103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP043953.1\|WP_150205099.1\|2354207_2355167_-\|response-regulator	unknown	unknown	gnl\|CDD\|381147

Protein	Function_ID	Function_description	E-value
NZ_CP043953.1\|WP_150205098.1\|2353767_2354064_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.58347e-24
NZ_CP043953.1\|WP_000885235.1\|2361109_2361721_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.28002e-23
NZ_CP043953.1\|WP_150205275.1\|2355163_2358628_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	4.0634e-58
NZ_CP043953.1\|WP_000432325.1\|2365259_2366138_+\|glucose-1-dehydrogenase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.33703e-161
NZ_CP043953.1\|WP_000937465.1\|2352835_2353471_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.90858e-63
NZ_CP043953.1\|WP_001124839.1\|2361793_2362405_-\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	6.03039e-39
NZ_CP043953.1\|WP_000376213.1\|2360497_2360953_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	7.21166e-40
NZ_CP043953.1\|WP_000482091.1\|2370117_2370597_+\|CinA-family-protein	gnl\|CDD\|224463	COG1546, CinA, Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only].	5.88094e-21
NZ_CP043953.1\|WP_085941324.1\|2366193_2368338_-\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_CP043953.1\|WP_150205100.1\|2358793_2360440_+\|allantoin-permease	gnl\|CDD\|224374	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism].	2.20194e-22
NZ_CP043953.1\|WP_150205101.1\|2368392_2369802_-\|iron-containing-redox-enzyme-family-protein	gnl\|CDD\|379634	pfam14518, Haem_oxygenas_2, Iron-containing redox enzyme. The CADD, Chlamydia protein associating with death domains, crystal structure reveals a dimer of seven-helical bundles. Each bundle contains a di-iron centre adjacent to an internal cavity that forms an active site similar to that of methane mono-oxygenase hydrolase.	8.39289e-18
NZ_CP043953.1\|WP_000108365.1\|2370881_2371103_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	5.30417e-06
NZ_CP043953.1\|WP_150205099.1\|2354207_2355167_-\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	9.2359e-56

>NZ_CP043953.1|WP_000795915.1|2362687_2362924_+|hypothetical-protein
MKNQRDAVLGYADEQHAYYIRLIENDAVLGESYGIFCENPESEAAESIMTTLFLKKSFWLNGSEFTDIVKGLHPLTHS
>NZ_CP043953.1|WP_001124839.1|2361793_2362405_-|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MPKKKEFEHGGARENAGRKAQFNEPTKVIRVPESQVNFIKNWLLNNVKTDNQTDFTSKLKIQQVHPNNDKIYHIPLATERVAAGFPSPAQDDIEQALDLNEYLIRNENATFIVKANSLSMLDAGIDIDDPLIVDRSIPAKSGDIVIALIDNDFTVKRLMIDTQFQPPKVWLKAENPDYQNIYIEEGQELVIWGVVTYNLKRMR
>NZ_CP043953.1|WP_000885235.1|2361109_2361721_+|LysE-family-translocator
MAFNIFIAFWSVSILFIITPGADWAYAISAGIKGKVVVPAVAGMLFGHFITILLVAAGVGLLVANNPTALMILTVAGSAYLLWMGINLLLTPPTPNQSGSEKAQSWLRWATKGVYVSGLNPKVFLLFLALLPQFIDTTASWSVTTQILAFGVVHIISCAIIYLMVGYGSEAILKTRPQAAQLVGRFSGGLMVVIATCLLIGQI
>NZ_CP043953.1|WP_000376213.1|2360497_2360953_-|Lrp/AsnC-family-transcriptional-regulator
MDRTDKKILAELQLNGRLSITELAEKVGLSISPCHRRVKALEESGAIKGYRAELDPNLVGFEFSAIVFITLKEGDKQAVEKFENAVIEIPQIIQAQRLFGEPDYLLHVVAKDLPAFQRLYDEKLSAIPSVQRLISTIVMKDVVPERLFPIG
>NZ_CP043953.1|WP_150205100.1|2358793_2360440_+|allantoin-permease
MTENDWEIDVMSVSEHPNLDTVQGTDSQKAVNETLEDYTLRYAPHSFRRWSPKVVAITALGGIAYLADFSIGASIGMSYGTTNAVFSILFAAIIIFLTGIPLAYYAARYNIDLDLITRGAGFGYIGSVLTSIIFASFTFIFFALEGSIMAQGLLLGLGIPLWAGYLISTVMVIPLVIYGMKALSTLQVWTTPLWLVLMIGPVAYLIYQEPTLVSQFATFTGHEGFAPVDMAAIMLGAGICLSLIMQIGEQIDYLRFMPAKTKENSKAWWAAVISAGPGWVILGAIKQIIGAFLGFYLLTKIPGVNSTEPVQQFNAAFHDMLPGWAALTLAVILVVISQIKINVTNAYSGSLAWTSAYTRISKHYPGRIVFVIVNLAIALALMEGNMFAVLGKILGFYSNFAIAWVVVVATDISINKYVLKLSPKEPEYRRDMLYNVNPVGMVAFLVSAGLSIAAFFGLLGSFLAPYSPIIALVLAFVLTPIMGLLTKGKYYIKSHDDGVKEPRYDAEGTPVATVYHCRVCEQGYERPDIMFSHKHNGTICSLCKTLDA
>NZ_CP043953.1|WP_150205275.1|2355163_2358628_-|response-regulator
MSVMPDSSRPQQAPQRVIKTRREYNIWVADESIEDYALRYAPTSVRKWSPWTVTNTAISTVSFLAMEAIGATMLWQYGFSNAVWAAIVVCTIIFLTSWPISYYAAKYNVDVDLLTRGAGFGYIGSTITSLIYASFTFILLAFEAAIMAMAIELALGIPQVIGYLISALVILPLVVKGIGFINKVQAITQPIWLLLLLLPWFFVLWKQPQILSSSLHFVGAVSNSTDFNLYYFGAACTLIFSFVIQIGEQADYLRFLPQKEKNRTAWRFAVFLGGPSWIIFGFLKVLMGMLLMVLAFQLFIPVSELDNPTYLYWVAYQQFILNPQLALILTLALVCLAQIKINMTNAYAGSLAWSNFFARLTHSHPGRIVWLLFNVFIAIVLMEMGISHAVERILGLYSNIALAWIGAVVADLIICKPLGLSPKGIEFRRAYLYDINPVGVGALLIASVLSMLSYLGFFGLMAKGLASFIALGSAVLCVPIIAYLTKGKYYIARQPEKIQATSVANCVVCERDYELADMAGCPAYNGTICSLCCSLEARCHDLCKPDARWSVQLKKAIWHYLPERWASRLNSRVSLYLLLTLGLSIVLAVSLSLVYIQEKTYLETINAAAVPQLFTLFVKIYTILFLLMSVAAWWLVLNDESRRNAEIETHQQTALLIDEIAAHEVTSKDLQDARISAERANDAKSRYVIGISHELRTPLNSILGYSQLLQKQEQLSEQGKMALGVISRSGQHLTSLIDGLLDLARIETGKISLNVVDVHFPNFIEQIIQMFQPQFEQKNLQFVYEIGENLPHYVRTDKKRLEQVLINLLGNALKFTTSGTITLKVEYRFQTAYFEIRDTGCGIAEADLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLSVTSQLNQGSQFKIKFYLPSKEVVHPISNVYSNQITGYQGERKRILVVDNEAVDRGLVANFLKPLGFIIEEAESGIDCLRRVPIFQPNLILMDLNMPLMGGWETARLLRQNNITNVPILIISANAGEREVNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLVWIDSKSDANLENNEVQTLDVKVFKQEQVAVHTSIQQPENNDLLDLPQSLQQLNDLIGQGYIRGIQQTLMQCRQNFPEHDELWEQLEQAIRKFDLKHAQRLIQDKQ
>NZ_CP043953.1|WP_150205099.1|2354207_2355167_-|response-regulator
MSTQHVSFQQASPNEQAIILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFESCIQLKASPSTQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHAKLLQQQKQVIDATETAILALDVHGKIVWKTQKASDLLNQYLPELEGFEAGLKAWFSDLEHEKDPKKLTSCSYSTPSQQLQLLLLTPWETEPSVAKNYLIQIKTTTPALEMADILKYCPQLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVAHINSLVQEFH
>NZ_CP043953.1|WP_150205098.1|2353767_2354064_-|GNAT-family-N-acetyltransferase
MNIQQKDDTKHGSFSLLDGETVAGEMTYTWAGESMLIIDATDVNENYRGQGVGRQLLDALVAFVREKDVKVIPLCPYAKSVFDKDPSIGDVLRKKAID
>NZ_CP043953.1|WP_014206469.1|2353559_2353673_+|hypothetical-protein
MCNEFIFFPIGLKLFLLDKLFYKFDKFDLAIENLQIS
>NZ_CP043953.1|WP_000937465.1|2352835_2353471_-|amino-acid-ABC-transporter-permease
MLPQFFSATLTTLKISIISIILAIIVGLICSILITYRVRVLNRIAQFYIELSRNTPLLIQLFFLYYGLPKLGIKIDGFTCGVIGLTFLGGSYMAEAFRAGLQSVAKGQIDSAKSIGLQPIQIFRYVIFPQALAISIPAIGANCLFLIKESSVVSAIAVVELLFVTKDLIGMDYKTTEALFLLIMAYLIILLPVSILTSYLEHRSRKVSHGI
>NZ_CP043953.1|WP_045544265.1|2364704_2365118_+|hypothetical-protein
MMQPIHTHSTLQYIHISVPEILLSNIQIKNSWQDYNQEWSYRLDPPHASHPFQRDLYIIKSKNIEMEDIKKLLDNTVVKNSKNKDDLKNIVEAETVIKEILDLSNYIPIENWLNDTGNRSIVESMIDKNKVKLLDII
>NZ_CP043953.1|WP_000432325.1|2365259_2366138_+|glucose-1-dehydrogenase
MENTTNQYPSEVPAQVQPHQPGDQEKMHPEPEIIKASHKGSEKLKGKVAVISGGDSGIGRSVAVLFAREGADIAVLYLEEDQDAEITKQLIEKEGQQCLLLKGDISDPDLAKQNIDKVLQHFGKINILVNNAGVQYQQKEIESISNEQLEKTFKTNIFAMFYLTKEAIPYMEEGDSIINTTSITSYQGHDELIDYASTKGAITSFTRSLSNNLMKQKKGIRVNGVAPGPIWTPLIPSSFDAETVEKFGKDTPMGRMGQPSEVAPAYLFLASDDASYITGQVIHVNGGQIVNG
>NZ_CP043953.1|WP_085941324.1|2366193_2368338_-|catalase-HPII
MDMNDNTKSTNKTSEMAGADAANKANTTQKTEQLDTVRDDATNEALTTNQGVKIADNQNSLRAGIRGSTLLEDFILREKITHFDHERIPERIVHARGVGAHGYFQAYEGNERLTKAGFLTDPTIQTPIFVRFSTVQGPRGSADTVRDIRGFAIKFYTQEGNFDLVGNNAPVFFVQDGIKFPDFVHAVKPEPDTEIPTGATAHDTFWDFVSLVPESAHAVIWAMSDRAIPRNLRSIQGFGVHTFRLINAEGKSHFVKFHWTPKQGLSALVWDEAQKLAGKDPDFHRRDLYEAIEQGFYPEWELGVQIVEEEDEMNFDFDLLDPTKIIPEELVPVTPIGRFVLNRNVDNFFAETEQVAFCPGHVVPGIDFTDDPLLQARLFSYTDTQLSRLGGPNFHQIPINKPVCPFHNNQRDGIHQHTIHKGQAAYQPNSIDGNWPVETPPAASNGGFESYPEKISGHKLRQRSETFSDYFSQPRLYYKSLAPHEQKHVVDAYTFELSKVQRKHIRERQVQQILANIDLDLARQVGANLGIEVPDLTLNYKKTAVEKSAKLSFLAFPPEDIQGRKVAVLIHNMVKSDALEAIKNWAIKEGVILHLLAPSLAPVKDHKDNVIVADGMQMSEPSIAYDAVIIPDGDNLNTVMQDGVARHYLLEAYKHLKPIVFLGNKSDLLEPLGLVADEGTLIEDEFQHVAEKFKNLIKAHRVWSREQIAAHVPA
>NZ_CP043953.1|WP_150205101.1|2368392_2369802_-|iron-containing-redox-enzyme-family-protein
MPVVVKKRLLDLLQDNQQNYYELFVFFLDPDVSSFEKEKKARDFLAKEIDKLEMKEIDFPSDINLIKAWCENDNKKNCQEFQAYLNRRQSGQDKEYFKNVAQAFEFLIKVTPTKKVDGAWLYSSVHYWNDPIFHELIITYLEELGLGEPKANHVCIYDDLLRSLGLDSFDLLLEDEYYHQAVVQLALGYAPPEFIPEIVGFNLGYEQLPLHLLISNYELAELGIDSKYFNLHITIDNIDNGHAYKAIKVIEDIYNKYRDKELFLTKLKHGFALNNHGVSSSNIIKNLNTEDFVHRIFKRKALVGQLIHNETRQFGCKTINQWLSNPDDIAGLITHLTDHKWIKFNTDPEQSVFWRMINEENGKMFGVFNPVERQIIHDWIAGSDHSSSFLAYSRELKNSQRIQDYLFSYISDGELDALQERVQQSNDLAIKICKLTPFLAPDSHHKSIGLWSTRKYVELLFPYLGTFKN
>NZ_CP043953.1|WP_000482091.1|2370117_2370597_+|CinA-family-protein
MFNKCCELLAKEKIKIAFFESASAGYLAYRFSLSPYSGDILIGSLVSYDLRVKENTLHISEELIEKYTAESMQVTVEMINKGKELLHADLYVACTGLLKKGGSETPEKPVGTFFYSIYYKNNFYNFRRVLRGPAFLKLRKLIYYVTQDIKLIILEDKRR
>NZ_CP043953.1|WP_000108365.1|2370881_2371103_+|hypothetical-protein
MSTTNNQANQRNNQQQQQQQNDNRNQQQHGNQQQNDQQQQNNQQQQQNDNRGQQQGSNQKDSGQQNSNNNQQR
>NZ_CP043953.1|WP_045544267.1|2371208_2371526_+|hypothetical-protein
MTDQNTDHAQLVAGDHTYSDSRWRESYLTRPYYQEAQLTTPDLDYDRDFSAAYELGHRARSESKEGTQFEDMEGSLQQKWEELKAESRLKWEHAKQAIKDAWDDM
>NZ_CP043953.1|WP_000498474.1|2371610_2371832_-|hypothetical-protein
MFVYFTDGTCINDSEIYGVKAKYEQNKYVVEVTIKPTHVLATTPSVQFKKEIFDDPILANQYLSHNFNMPPFF
>NZ_CP043953.1|WP_001136759.1|2371919_2372348_-|hypothetical-protein
MPQYLKIAEKIYQNVKEKKGFTDDPMEDLNNLMIELRQEIKGTKLKLLYNYIDFAEILIKPLQESKIKLDLSLIPKSKNTQEFVLWLAGFIERITTGGQEKLPPIRAKITLPAYAYEETYPSQKKPVNNGEEIIEYFKKNQS
>NZ_CP043953.1|WP_000251637.1|2372617_2372761_-|hypothetical-protein
MVRIFCAVSMVLAIAMGMSACQDRNSRNDGMHEASDPATSHDMNKNS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1221621 : 1236417

Acinetobacter_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187844.1\|1221621_1222170_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.7e-97	100.0
WP_071210739.1\|1222432_1223932_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	4.1e-274	95.0
WP_045543893.1\|1223933_1226309_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.0
WP_071210738.1\|1226315_1227299_+	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	1.3e-183	96.3
WP_000066126.1\|1227309_1228005_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	5.8e-122	100.0
WP_045543895.1\|1228014_1228821_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.5e-145	98.9
WP_001982145.1\|1228830_1229880_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
WP_045543896.1\|1230234_1232967_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	97.9
WP_150204977.1\|1232974_1235746_+	ERAP1-like C-terminal domain-containing protein	A0A0P0IY26	Acinetobacter_phage	0.0e+00	98.7
WP_000566784.1\|1235841_1236417_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.2e-110	100.0

DBSCAN-SWA_2

1280771 : 1303284

Acinetobacter_phage(52.38%)

tail,head,integrase

attL 1281105:1281122|attR 1304337:1304354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000110166.1\|1280771_1281584_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A126HHM5	Vibrio_phage	5.0e-40	37.2
1281105:1281122	attL	NA	NA	NA	NA
WP_001010536.1\|1281580_1282354_-	ABC transporter permease	NA	NA	NA	NA
WP_045543904.1\|1282350_1283286_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.3e-23	30.0
WP_000135939.1\|1283583_1284570_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.9e-182	97.6
WP_031959482.1\|1284566_1284836_-	hypothetical protein	A0A1B1P9G0	Acinetobacter_phage	5.1e-42	86.5
WP_150204983.1\|1284837_1285185_-	hypothetical protein	J7I0Y4	Acinetobacter_phage	9.2e-36	68.1
WP_045543810.1\|1285627_1285891_-	hypothetical protein	NA	NA	NA	NA
WP_049589904.1\|1285887_1286526_-	hypothetical protein	A0A1X9SFE6	Acinetobacter_phage	7.1e-42	45.3
WP_053093876.1\|1286512_1287310_-	recombinase RecT	G9L6A2	Escherichia_phage	3.7e-56	55.7
WP_150204984.1\|1287319_1287916_-	hypothetical protein	A0A2C9CXX4	Yersinia_phage	3.7e-24	35.0
WP_150204985.1\|1287915_1288296_-	hypothetical protein	NA	NA	NA	NA
WP_150204986.1\|1288869_1289313_-	hypothetical protein	NA	NA	NA	NA
WP_086249813.1\|1289722_1290466_-	helix-turn-helix domain-containing protein	A0A1B1P9J5	Acinetobacter_phage	3.1e-81	61.9
WP_005039234.1\|1290565_1290757_+	helix-turn-helix domain-containing protein	J7HXD2	Acinetobacter_phage	8.4e-07	55.4
WP_032033630.1\|1290765_1291092_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_079391687.1\|1291221_1291575_+	HNH endonuclease	I6WB06	Burkholderia_virus	1.3e-13	56.5
WP_150204987.1\|1291552_1292431_+	hypothetical protein	A0A2H4JAA4	uncultured_Caudovirales_phage	6.6e-22	30.6
WP_150204988.1\|1292427_1293162_+	ATP-binding protein	A0A0D4DBZ2	Acinetobacter_phage	2.4e-65	53.2
WP_025467877.1\|1293158_1293347_+	hypothetical protein	NA	NA	NA	NA
WP_150204989.1\|1293492_1293999_+	RusA family crossover junction endodeoxyribonuclease	A0A1X9SFE9	Acinetobacter_phage	1.5e-26	53.0
WP_150204990.1\|1294008_1294413_+	hypothetical protein	NA	NA	NA	NA
WP_150204991.1\|1294409_1294601_+	hypothetical protein	NA	NA	NA	NA
WP_150204992.1\|1294575_1294926_+	hypothetical protein	A0A068CDI0	Acinetobacter_phage	6.5e-13	45.8
WP_150205267.1\|1295494_1295926_+	hypothetical protein	I2GUD3	Acinetobacter_phage	1.0e-28	88.9
WP_150204993.1\|1295916_1296228_+	hypothetical protein	A0A0D4DCM1	Acinetobacter_phage	1.1e-61	98.1
WP_150204994.1\|1296318_1296657_+	hypothetical protein	NA	NA	NA	NA
WP_032033645.1\|1296656_1296887_+	hypothetical protein	NA	NA	NA	NA
WP_150204995.1\|1296888_1298532_+\|head,tail	phage head-tail adapter protein	A0A2H4J3N6	uncultured_Caudovirales_phage	1.5e-123	45.0
WP_150204996.1\|1298528_1299014_+	hypothetical protein	NA	NA	NA	NA
WP_150204997.1\|1299006_1299630_+	hypothetical protein	NA	NA	NA	NA
WP_032049294.1\|1299641_1300541_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	1.1e-32	34.9
WP_150204998.1\|1300645_1301206_+	hypothetical protein	A0A1B1IRI7	uncultured_Mediterranean_phage	1.3e-23	36.3
WP_150204999.1\|1301205_1303284_+	carbohydrate-binding protein	A0A1B1IW99	uncultured_Mediterranean_phage	1.2e-32	27.3
1304337:1304354	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2834960 : 2849985

Acinetobacter_phage(63.64%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150205155.1\|2834960_2835596_+	SOS response-associated peptidase family protein	A0A218MNF5	uncultured_virus	3.4e-68	56.9
WP_150205156.1\|2835742_2836237_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	1.5e-44	59.6
WP_150205157.1\|2836240_2837551_+	DUF4113 domain-containing protein	A0A2H4JBL5	uncultured_Caudovirales_phage	5.4e-161	62.1
WP_150205158.1\|2837586_2837922_+	hypothetical protein	NA	NA	NA	NA
WP_150205159.1\|2838068_2838614_-	hypothetical protein	A0A0N7IRE7	Acinetobacter_phage	7.5e-93	91.2
WP_000433907.1\|2838656_2839046_-	hypothetical protein	A0A0P0I8L9	Acinetobacter_phage	3.3e-66	99.2
WP_150205160.1\|2839113_2842539_-	hypothetical protein	A0A0P0HSH9	Acinetobacter_phage	0.0e+00	94.1
WP_000835161.1\|2842531_2842894_-	hypothetical protein	A0A0P0J0A2	Acinetobacter_phage	6.2e-51	79.2
WP_000368382.1\|2842890_2843397_-	DUF1833 family protein	J7HXQ5	Acinetobacter_phage	3.8e-91	98.2
WP_000277446.1\|2843396_2843795_-	hypothetical protein	J7I0X8	Acinetobacter_phage	3.1e-72	97.7
WP_150205161.1\|2843887_2844475_-	hypothetical protein	NA	NA	NA	NA
WP_150205162.1\|2844565_2848906_-	tape measure protein	A0A0D4DC37	Acinetobacter_phage	0.0e+00	83.4
WP_001275794.1\|2849036_2849300_-	hypothetical protein	NA	NA	NA	NA
WP_000721571.1\|2849301_2849985_-	hypothetical protein	A0A0R6PJY5	Moraxella_phage	1.3e-44	46.0

DBSCAN-SWA_4

2853670 : 2880543

Acinetobacter_phage(93.1%)

capsid,coat,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150205168.1\|2853670_2854186_-	hypothetical protein	A0A0N7IRG3	Acinetobacter_phage	8.2e-73	98.5
WP_000094273.1\|2854255_2855173_-	hypothetical protein	J7HXP7	Acinetobacter_phage	3.4e-170	99.7
WP_150205169.1\|2855225_2856197_-\|tail	phage tail protein	A0A0D4DCQ4	Acinetobacter_phage	3.9e-92	51.9
WP_150205170.1\|2856196_2856550_-	hypothetical protein	J7I469	Acinetobacter_phage	3.5e-59	99.1
WP_150205280.1\|2856653_2857316_-	hypothetical protein	NA	NA	NA	NA
WP_150205171.1\|2857353_2857797_-	hypothetical protein	A0A0D4DBX3	Acinetobacter_phage	3.3e-62	81.0
WP_071243732.1\|2857753_2858122_-	hypothetical protein	A0A0D4DBN1	Acinetobacter_phage	4.8e-51	81.1
WP_150205172.1\|2858093_2858498_-	hypothetical protein	A0A0P0IKR8	Acinetobacter_phage	7.6e-66	93.2
WP_071243734.1\|2858558_2859224_-	hypothetical protein	NA	NA	NA	NA
WP_150205173.1\|2859261_2859630_-	glutamate 5-kinase	J7I467	Acinetobacter_phage	9.3e-63	95.9
WP_150205174.1\|2859629_2860010_-	hypothetical protein	A0A0P0IVQ3	Acinetobacter_phage	9.4e-50	82.5
WP_150205175.1\|2860013_2860349_-	HeH/LEM domain protein	A0A0N7IRE4	Acinetobacter_phage	6.3e-50	94.6
WP_000502909.1\|2860393_2861344_-\|coat	coat protein	A0A0P0HSG2	Acinetobacter_phage	2.8e-175	97.8
WP_150205176.1\|2861357_2862149_-	hypothetical protein	A0A0P0J090	Acinetobacter_phage	4.9e-93	79.8
WP_000589038.1\|2862236_2862551_-	hypothetical protein	A0A0S3UFT8	Pseudomonas_phage	5.2e-14	50.5
WP_001291453.1\|2862602_2862755_-	hypothetical protein	NA	NA	NA	NA
WP_000004552.1\|2862770_2863001_-	hypothetical protein	NA	NA	NA	NA
WP_150205177.1\|2862997_2864104_-\|capsid	minor capsid protein	A0A0P0IR98	Acinetobacter_phage	8.7e-189	89.4
WP_065707852.1\|2864113_2865454_-	DUF4055 domain-containing protein	A0A0P0IDW1	Acinetobacter_phage	2.6e-248	96.9
WP_002047119.1\|2865493_2866786_-	Terminase-like family protein	A0A1B1P9C9	Acinetobacter_phage	4.9e-215	86.3
WP_000729387.1\|2866745_2867261_-	DUF2280 domain-containing protein	A0A1B1P9C2	Acinetobacter_phage	3.2e-45	61.3
WP_002121497.1\|2867319_2867961_-	hypothetical protein	J7I4N9	Acinetobacter_phage	2.2e-123	96.2
WP_002121499.1\|2867929_2868364_-	hypothetical protein	A0A0P0IVP9	Acinetobacter_phage	1.4e-78	97.9
WP_150205178.1\|2868422_2868878_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	8.0e-80	96.0
WP_065087369.1\|2869570_2869807_-	hypothetical protein	NA	NA	NA	NA
WP_150205179.1\|2870020_2870365_-	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	2.3e-10	36.5
WP_024438609.1\|2870660_2870945_-	hypothetical protein	NA	NA	NA	NA
WP_150205180.1\|2871146_2871365_-	hypothetical protein	NA	NA	NA	NA
WP_150205181.1\|2871440_2871719_-	hypothetical protein	NA	NA	NA	NA
WP_150205182.1\|2872107_2872662_-	hypothetical protein	NA	NA	NA	NA
WP_047481145.1\|2872737_2873238_-	hypothetical protein	A0A0P0IY98	Acinetobacter_phage	2.9e-91	98.2
WP_150205183.1\|2873234_2873630_-	DUF559 domain-containing protein	A0A0P0I8E8	Acinetobacter_phage	3.4e-63	90.8
WP_150205184.1\|2873626_2874568_-	helix-turn-helix domain-containing protein	A0A0P0HSN8	Acinetobacter_phage	2.1e-21	57.8
WP_150205185.1\|2874564_2874852_-	hypothetical protein	NA	NA	NA	NA
WP_000049332.1\|2874907_2875228_-	hypothetical protein	A0A0P0HSE9	Acinetobacter_phage	3.2e-43	88.7
WP_000996059.1\|2875238_2875490_-	hypothetical protein	A0A0N7IRE1	Acinetobacter_phage	7.1e-38	95.1
WP_150205186.1\|2875598_2876291_+	helix-turn-helix domain-containing protein	A0A0P0J076	Acinetobacter_phage	2.9e-33	44.2
WP_031958571.1\|2876350_2877319_+	ATP-binding protein	A0A109WUE1	Acidianus_tailed_spindle_virus	2.1e-08	28.7
WP_000273035.1\|2877346_2879869_+	S8 family peptidase	NA	NA	NA	NA
WP_031958569.1\|2880022_2880211_+	hypothetical protein	NA	NA	NA	NA
WP_150205187.1\|2880213_2880543_+	hypothetical protein	A0A0P0IVW1	Acinetobacter_phage	2.5e-30	62.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043953

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection