CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029191	Streptomyces venezuelae strain ATCC 14585 chromosome, complete genome	18 crisprs	csa3,WYL,casR,DEDDh,cas4,Cas9_archaeal,cas3,DinG	4	9	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029191_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_1

157041-157181

Orphan

Consensus_repeat	Method
GCCGAGGGCGGACGGGCGGACAGGTGGCGGGTGGTGGGTGGTGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_1

>merge|NZ_CP029191|1|157041-157181|CRISPRCasFinder
GCCGAGGGCGGACGGGCGGACAGGTGGCGGGTGGTGGGTGGTGGGTAGTGGGTGGCGGCTGTTACCTGCCGGCGGTCACTGATGGGCGGCTGCCCGCCGAGGGCGGACGGGCGGACAGGTGGCGGGTGGTGGGTGGTGGGT

>NZ_CP029191|1|1|157041-157181|CRISPRCasFinder
GCCGAGGGCGGACGGGCGGACAGGTGGCGGGTGGTGGGTGGTGGGT	AGTGGGTGGCGGCTGTTACCTGCCGGCGGTCACTGATGGGCGGCTGCCC
GCCGAGGGCGGACGGGCGGACAGGTGGCGGGTGGTGGGTGGTGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150181861.1\|143039_143651_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP029191.1\|WP_150181862.1\|143750_144818_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|374853
NZ_CP029191.1\|WP_150181869.1\|154420_155413_-\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP029191.1\|WP_150181871.1\|160524_160737_-\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	unknown
NZ_CP029191.1\|WP_150181873.1\|163276_164047_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180440
NZ_CP029191.1\|WP_150187953.1\|166275_166755_+\|diadenosine-tetraphosphate-hydrolase	unknown	unknown	unknown
NZ_CP029191.1\|WP_150187954.1\|167097_167709_+\|HPP-family-protein	unknown	unknown	gnl\|CDD\|377434
NZ_CP029191.1\|WP_150181863.1\|144814_146023_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99740
NZ_CP029191.1\|WP_150181867.1\|152978_153800_-\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP029191.1\|WP_150187955.1\|169488_170241_-\|DJ-1/PfpI-family-protein	unknown	unknown	gnl\|CDD\|153233
NZ_CP029191.1\|WP_150181875.1\|168124_169339_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223092
NZ_CP029191.1\|WP_150181874.1\|165460_166126_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182177
NZ_CP029191.1\|WP_150181865.1\|146692_147760_-\|type-III-polyketide-synthase	unknown	unknown	gnl\|CDD\|238427
NZ_CP029191.1\|WP_150181866.1\|149896_150856_-\|cyclase	unknown	unknown	gnl\|CDD\|176870
NZ_CP029191.1\|WP_150181864.1\|146028_146598_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP029191.1\|WP_150181870.1\|156094_156784_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP029191.1\|WP_150181872.1\|162067_162688_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029191.1\|WP_150187952.1\|157849_159481_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP029191.1\|WP_150181868.1\|153798_154032_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150181876.1\|169275_169458_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150181861.1\|143039_143651_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	5.10961e-56
NZ_CP029191.1\|WP_150181862.1\|143750_144818_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|374853	pfam16864, dimerization2, dimerization domain. This domain, found in methyltransferases, functions as a dimerization domain.	2.00612e-17
NZ_CP029191.1\|WP_150181869.1\|154420_155413_-\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	3.07567e-50
NZ_CP029191.1\|WP_150181873.1\|163276_164047_+\|glucose-1-dehydrogenase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	3.93569e-82
NZ_CP029191.1\|WP_150187954.1\|167097_167709_+\|HPP-family-protein	gnl\|CDD\|377434	pfam04982, HPP, HPP family. These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.	3.23897e-18
NZ_CP029191.1\|WP_150187955.1\|169488_170241_-\|DJ-1/PfpI-family-protein	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	3.80415e-61
NZ_CP029191.1\|WP_150181867.1\|152978_153800_-\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	7.04824e-60
NZ_CP029191.1\|WP_150181875.1\|168124_169339_+\|hypothetical-protein	gnl\|CDD\|223092	COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	4.31764e-107
NZ_CP029191.1\|WP_150181874.1\|165460_166126_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|182177	PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR; Provisional.	3.01497e-12
NZ_CP029191.1\|WP_150181865.1\|146692_147760_-\|type-III-polyketide-synthase	gnl\|CDD\|238427	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.	5.05237e-107
NZ_CP029191.1\|WP_150181866.1\|149896_150856_-\|cyclase	gnl\|CDD\|176870	cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this gene results in the production of novel polyketides having shorter chain lengths (by up to 10 carbons) than OTC. Monodomain ARO/CYCs have a single ARO/CYC domain, and are often associated with C9-C14 first ring cyclizations, these latter domains belong to a different subfamily in the SRPBCC superfamily.	6.91453e-40
NZ_CP029191.1\|WP_150181864.1\|146028_146598_-\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	2.92739e-15
NZ_CP029191.1\|WP_150181870.1\|156094_156784_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.85294e-09
NZ_CP029191.1\|WP_150181872.1\|162067_162688_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.1981e-11
NZ_CP029191.1\|WP_150181863.1\|144814_146023_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.70088e-112
NZ_CP029191.1\|WP_150187952.1\|157849_159481_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0

>NZ_CP029191.1|WP_150181870.1|156094_156784_-|TetR-family-transcriptional-regulator
MVQQERAARTRESLMRAAAEVFAEEGFVPATLGTISRRAGVSTGALHFHFANKHALARAVEAASLATLHRITRQAEEDHSGPLQRLAAAGNALLRALEQDIVVRAGFQLVGPAPWRTDPLDLRGAWQRWVETLLHTARRQGALAGGISPAGAAAAVVAATVGFAALGRTDPRWLAPRTLAQYWDLLLPRLTPHPATAQAATTSHPAGPAHPAVPDAPQDRSHPGGRSTT
>NZ_CP029191.1|WP_150181869.1|154420_155413_-|AfsR/SARP-family-transcriptional-regulator
MDIEVLGALGVRENGRSITPTAPKPRQVLALLALHADRMVPVSALTEELWGAAPPRSARTTLQTYVLQLRELIAAALERDTLPDATGTAATGTAATGAGSAPGGTGAGAGPVRSAKDVLVTMPGGYLLCSGGGASDVRTFERLAGAGYRAMDAGDCAGAARQLREALALWSGTAFADVQAGPQLQMEIKRLDESRLCALDRRIEADLRLGRHRELLAELTVLVNGYRTHESLHAQYMLALHRSGRRGEALDAYQRLRTTLVQELGLEPSARLRRLQRSILTAGHDLAAPTPAAPAAPVVPAAAPAPAPAGAGAVPGAAPPAARVRLVPTG
>NZ_CP029191.1|WP_150181868.1|153798_154032_+|hypothetical-protein
MGVLRTSSSVCLDCIPSPRALLGRVRGVLLSPYGPRGPGRGTGTGTGTGAGRGTGTGTGRGRGEAASGAVHALRVAR
>NZ_CP029191.1|WP_150181867.1|152978_153800_-|AfsR/SARP-family-transcriptional-regulator
MKIQVLGPLSAEVNGGSIVPTARKPRQILSLFALYPGQVMPVPTLMEELWGTEPPQSALTTLQTYILQLRRHLGTALGPGTPGTAKEVLATRHGGYLMQIPAEGVDVHEYDRLATEGRTAFENGDDATAADRFRRALALWRGPALVDVRVGPILEIEVMRLEESRLGTVERRIDADLRLGRHSELIAELTELTARYPQHEGLHSQAMVALYRSGRQASALEIYRKLRIRMIEGLGVEPSPQVQRLHQAMLAVDPQLDVTAGPRRTSTFDLYAA
>NZ_CP029191.1|WP_150181866.1|149896_150856_-|cyclase
MPGERIHRLSHTREVAAPAATLYALIADPERWPLYLPRNIYAQRLDFDGVHERVRVWALAEGQIVSWTAHRTQDPVRRQIAFRQDLLMEPATSMAGRWSVQPLDPGRCRVTLEHEFTAAPDRPQDAIWLAQVTTDNTRSTLRSLQFLAERWTRLDQLALSFAESIRVHGPAELVYGFLYDVADWPGQLPHVRRAALEEPHLGIQKVALELAADDGGPARNVAGIRICFPHAGRIVHKATVPRPLLAAHCGEWSVLPDERGVTVVAQHHALLREDHIEQVLGAGTTLAEARRRIRADLARDSRQTLQLARHHAESAIRVL
>NZ_CP029191.1|WP_150181865.1|146692_147760_-|type-III-polyketide-synthase
MPRLCKPSVRVPEYVITAEETLQFAESVHAGKPQLPLALRLIRNTGVLKRHIVQPIEQTLAHPGLTERNRIYEAESKKRTPEVVEEALANAEVNARDIDAIIYVSCTGFLMPSLTAWLINKMGFRSDTRQIPIAQLGCAAGGAAINRAHDFCVAHPGSNVLIVSCELCSLCYQPDMDDIGSLLSDGLFGDAVAAAVVRGTGGTGIELERNSSYLIPDTEDWISYSVRDTGFHFQLDRRVPGTMEPLAPVLRDFAAGHQWDASNLDFYIVHAGGPRILNDLAKFLDVDRKVFRHSWSTLTEYGNIASAVVLDAALRLFEEDTPMPDATGLIAGFGPGITAEMALGRWNSDTPPAAG
>NZ_CP029191.1|WP_150181864.1|146028_146598_-|cupin-domain-containing-protein
MTSSLIVPPGGGRTLKTPAQEVTFKATQAQGSAVSIFEVIVPPGFDVGAHVHHESQEFFYVLEGELDLMCFEPTERTRDTWHHWRSASGERVIRAAEGGCMFVPTGTPHAFRNATDKPVKMLFQSFPSPDHEQYFEEIAEIWARGTTVDPAAVEEMRKRYDVEELTPLRYQPPTTPQPQPQQSPKPQGT
>NZ_CP029191.1|WP_150181863.1|144814_146023_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTTTTPAASAATSAPAAGSGAAVPLVHASLGEQELAAVAEVFASGWPAGQGPRGKALEAQLAQRYAMDAVALSNCGAALHVALLALGVQRGDEVIVADYTFPAPAHAVRYLDAVPVFADVRPDTHTVDVQAVADLITERTTGIIAVDTVGLPADYRELQALADRHGLFLIEDAACAVGATYQGRQAGALAPVSCLSFHGRKGATSGEGGALLAADPAIAADARLRSSFGIGSIFDQSKIVGLPIPEFTEIGYNFKLSDIAAAILQVQLGRIDELLARRTQVAAAYGELLADEELVTLPQVPADRTHAWQSYLIALDARVDRAALAADLRGQGIGCGHGTWASHLQPVFAARQACPVSADLFARHLAIPMHAELTADQIERVVTVLRTALRTHAAPAGRGGTA
>NZ_CP029191.1|WP_150181862.1|143750_144818_-|methyltransferase-domain-containing-protein
MSEHQPTTTTTPHTGPDTAGHAGPDSAPDWGPDTILRLINGYWSTGILGAAAEHRLFTHLEDGAHDAAQLAARAQISERGAQTLLDGLVSIGLVTLERGRYRNTPAASAYLVAGRPADLSAMARLKLTHMGKLAALPEVVRAGGPVSDPTTEVADNPHWGQVVPAIAAQSVPAAAVAADVLRLSEAGPLSILDVGGGSGIYSATWLEANPAARATQLDWEPINAIARELLAERGVADRFTCIDGDFHTTDFGTGAYDVALYSHIAHQEGPEDNIEVFTRLKDALKPGGALVVCDYVVDDDRTGPAFPLLFASEMLLKSQQGGTWRRADYHAWLTKAGFSDITFHSAPPATLVIAR
>NZ_CP029191.1|WP_150181861.1|143039_143651_-|NAD(P)H:quinone-oxidoreductase
MDPVNVSVIYYSATGTVHALAQAVAEGAEKAGATVRLRKVAETAPEAAVNANPAWVEHRAATTDIAEATHDDLAWADAVLFGTPSRFGNPASQLRAFIDTTGPLWFAGKIAGKVFSAFTASNTAHGGQESTILALSNTFYHWGGIIVPPGYTDPIQFQSGNPYGTSHVAGEGAPGEVALQAARHQARRVVDTTAALKAGRAAA
>NZ_CP029191.1|WP_150187952.1|157849_159481_-|acyl-CoA-carboxylase-subunit-beta
MTEPSTPDTAAAQAAAAAAAEAAAAAGAGARGKAAELAAIRAQALAGPGEQATAAQHARGKLTARERIALLLDEDSFQEVEQLRRHRATGFGLEAKKPYTDGVVTGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMAIAAGAPLVSLNDGAGARIQEGVAALAGYGGIFQRNTKASGVIPQISVMLGPCAGGAAYSPALTDFVFMVRDTSQMFITGPDVIKAVTGEDVTQNGLGGADVHAETSGVCHFAYDDEETCLAEVRYLLSLLPSNNRQAPPAAACTDPAARPTPRLLEVVPADGSRPYDMHQVLAELLDDGEYLEVHERWARNIICALARLDGQVVAVVANQPQALAGVLDIEASEKAARFVQMCDAFNIPILTLLDVPGFLPGVDQEHGGIIRHGAKLLYAYCNATVPRISLVLRKAYGGAYIVMDSQSIGADLTYAWPTNEIAVMGAEGAANVIFRKQIAAAQDPGAMRARLAKEYRAELMHPYYAAERGLVDDVIDPAATREVLIRALAMLRTKHADLPSRKHGNPPQ
>NZ_CP029191.1|WP_150181871.1|160524_160737_-|acyl-CoA-carboxylase-subunit-epsilon
MDAAERRTALLRIERGQASDEELAAVAVTLLSLAAGRPPGGEDRPHAPRRSEAWRPPEAARAYRAPHSWR
>NZ_CP029191.1|WP_150181872.1|162067_162688_+|TetR-family-transcriptional-regulator
MSKQERATRTRNALILSAAELFERYGYVRASLDEISSGARVSRGALHFHFENKAAVADAVEQAAARTLRATAQAIPLGQSSAIQSLMDLSHRMVHLLHHDVVVRAGFRLNCDTGPRTPLDLRQEWQACVRRLVTRAADERALAAGVCPDGLVATVVATTVGLEVLSRANRGWLSTSSLTTFWQLLLPSVASPPTLPTLQPGGTPTP
>NZ_CP029191.1|WP_150181873.1|163276_164047_+|glucose-1-dehydrogenase
MTPPLKNLAGKVALITGASSGIGAAAARVFTREGARVVLVARREDRLQTLVKELRTAGADASYCTADVQSAPDMQRAVAHTLNTHGRLDAAFNNAGAAAAKTPLHLMDDATYDLIMDTNVRGVWNCLRPQISAMLTTGGGAIVNTSSVAGLVATSVAAPYIAAKHAVIGLTKVAAVEYAPHHIRVNAIAPGLTRSEMVQDWFTRHPAQEAKSKASSPQNRMAEPEEIAEAAAWLCTDHASFITGTTLTIDGGATTW
>NZ_CP029191.1|WP_150181874.1|165460_166126_-|TetR-family-transcriptional-regulator
MARQERAVRTRRAVLEAAAVVFAECGYSAATVSDILQVAGVTKGALYFHFDSKEALARGVLQAQVAFAGPVQELKVQEWVDAGLLLAHRLPRDPVVRAGAVLSSDPQGREHYGSAWPAWIELSAQTLAEAKERGEVLSHVVPRQTAELIVSAFHGVQLFSQLECGLADVERRISVLYDHVIPAITVPAVLARLDLAPDRGARLYAEAVSVAQPSLVPTSAG
>NZ_CP029191.1|WP_150187953.1|166275_166755_+|diadenosine-tetraphosphate-hydrolase
MGASWKRDRIGSALKGENPTVLRKMTAGFAVIGDVQFLPGYSVLLVDEPGVQRLSDLPKKRRLQFLSDMDQLGEAVERVCRRMDPAFRRVNLEILGNRDPFLQAHVWPRYEWEPADLVGVPVWLYPRARWSDERFALGPRHDALRVSIGAELDGLAAGD
>NZ_CP029191.1|WP_150187954.1|167097_167709_+|HPP-family-protein
MVDTQPAVPAAASAGTTATHTATPSAVAVAPRTRPRTRFSARLAGRAPAPPSPGAALHNISAATAVLLVLVAIGSVIHEPVLIPPLAASAAIIHCAPGLPLAQPRSVIAGHLLCAAVGYAVLAAAGSSPWAAALAAGIGLAVMTVARTQHSPACATAVVIVLNTPRPATFVPLLVGSAGLLVLAGWAASYARPRTPRYPAYWW
>NZ_CP029191.1|WP_150181875.1|168124_169339_+|hypothetical-protein
MNTDHVVRTFVDYFRERGHRRITGSTLLPPPGDPVLFTTSGMHPLTPYLEGRPHPLGNRLVNVQRCLRTTDLEEVGDPTHLTVFQMLGTWSLGDYEGPQSLRWGYELLTEGFGVDPGMMYATVFGGDDRTDPDTASLEMWEELGVPVEFTVDDNWWSNGPTGPCGPDSEIFLWTGGRSNDAPIHSTHTHPHSTHPTPSQDNRWVEMWNHVTMRYRRLDDGSLVPLPQRNVDTGLGLERLVATLQGKSSVFESDIFEPWRRLVPGLWPLDETSLRLVCDHLRSAVVVIGDGVRPTNTGRGYVLRRLVRRLLTVLWREEGGSRSLGDLPDELVRHTLDHFRQGMDPVDVRVILLDEEQRFRRLLERGRRILAQPRFRGPLDEERLRYLHDTHGLPRDLVLSLRSRE
>NZ_CP029191.1|WP_150181876.1|169275_169458_-|hypothetical-protein
MHPCRSVLGRLRLRWRWRWRLRLCLRSRSRQRPQAQSRPDHSRDRRLSTRSRGRPCVSWR
>NZ_CP029191.1|WP_150187955.1|169488_170241_-|DJ-1/PfpI-family-protein
MSGAAVAGAVGAVGAVGAAAAVGVGAGPARAASGKARLEAAVLLYDGFTALDAVGPYEVLCRVPGLRVTTVAREAGPVRTDTGELSLVADRAMRDVHRADVLLVPGGGDRGVTAMLGDATVHEWIRRVHRRSVWTTSVCTGSLILGAAGLLRGLPATTYWAARPYLEKVGATYKPGRFVEAGKIITAAGVSAGIDMGLHLAARLSGTEVAEAMQLAVEYDPDPPYDTGSPEKADAETEALALKLIADAAV

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Crispr_ID: NZ_CP029191_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_2

1436817-1436940

Orphan

Consensus_repeat	Method
ATCCAGCCCGTCCGGCGCTTGAGGACGAGCCCGCAGGGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_2

>merge|NZ_CP029191|2|1436817-1436940|CRISPRCasFinder
ATCCAGCCCGTCCGGCGCTTGAGGACGAGCCCGCAGGGCGATGGCCTGCACCCGCACGCAAAAACCGGACGGGCGGAAGAGAATCCAGCCCGTCCGGCGCTTGAGGACGAGCCCGGAGGGCGAT

>NZ_CP029191|2|2|1436817-1436940|CRISPRCasFinder
ATCCAGCCCGTCCGGCGCTTGAGGACGAGCCCGCAGGGCGAT	GGCCTGCACCCGCACGCAAAAACCGGACGGGCGGAAGAGA
ATCCAGCCCGTCCGGCGCTTGAGGACGAGCCCGGAGGGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150183154.1\|1446998_1447769_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183117.1\|1424598_1425501_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NZ_CP029191.1\|WP_150183129.1\|1429946_1430954_+\|PAC2-family-protein	unknown	unknown	gnl\|CDD\|378251
NZ_CP029191.1\|WP_150183127.1\|1429123_1429795_+\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP029191.1\|WP_150183144.1\|1440460_1441462_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_CP029191.1\|WP_150183138.1\|1438260_1439085_-\|SCO1664-family-protein	unknown	unknown	gnl\|CDD\|274813
NZ_CP029191.1\|WP_150183146.1\|1441463_1442252_-\|ferritin-like-domain-containing-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183135.1\|1433679_1436742_-\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|269882
NZ_CP029191.1\|WP_150183142.1\|1439712_1440399_-\|MSMEG_4193-family-putative-phosphomutase	unknown	unknown	gnl\|CDD\|163560
NZ_CP029191.1\|WP_150183140.1\|1439048_1439639_-\|DUF3090-family-protein	unknown	unknown	gnl\|CDD\|213872
NZ_CP029191.1\|WP_150183137.1\|1436963_1438193_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	unknown	unknown	gnl\|CDD\|183518
NZ_CP029191.1\|WP_150183121.1\|1426309_1427704_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238623
NZ_CP029191.1\|WP_150183131.1\|1431196_1432954_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173792
NZ_CP029191.1\|WP_150183123.1\|1427700_1428318_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239027
NZ_CP029191.1\|WP_150183150.1\|1443698_1444679_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223739
NZ_CP029191.1\|WP_150183152.1\|1444675_1446925_+\|DNA-helicase-RecD	unknown	unknown	gnl\|CDD\|273632
NZ_CP029191.1\|WP_150183119.1\|1425497_1426259_+\|nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP029191.1\|WP_150183133.1\|1432987_1433581_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130689
NZ_CP029191.1\|WP_150183125.1\|1428310_1429072_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|99813
NZ_CP029191.1\|WP_150183148.1\|1442476_1443532_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274647

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150183117.1\|1424598_1425501_+\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	9.31749e-79
NZ_CP029191.1\|WP_150183129.1\|1429946_1430954_+\|PAC2-family-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	1.31709e-50
NZ_CP029191.1\|WP_150183127.1\|1429123_1429795_+\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	3.39554e-46
NZ_CP029191.1\|WP_150183144.1\|1440460_1441462_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	9.23997e-165
NZ_CP029191.1\|WP_150183138.1\|1438260_1439085_-\|SCO1664-family-protein	gnl\|CDD\|274813	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.	2.07898e-121
NZ_CP029191.1\|WP_150183135.1\|1433679_1436742_-\|DUF5110-domain-containing-protein	gnl\|CDD\|269882	cd06596, GH31_CPE1046, Clostridium CPE1046-like. CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	6.51878e-170
NZ_CP029191.1\|WP_150183142.1\|1439712_1440399_-\|MSMEG_4193-family-putative-phosphomutase	gnl\|CDD\|163560	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.	2.72848e-116
NZ_CP029191.1\|WP_150183140.1\|1439048_1439639_-\|DUF3090-family-protein	gnl\|CDD\|213872	TIGR03847, TIGR03847, conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.	1.17125e-85
NZ_CP029191.1\|WP_150183137.1\|1436963_1438193_-\|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase	gnl\|CDD\|183518	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.	0
NZ_CP029191.1\|WP_150183121.1\|1426309_1427704_+\|amidohydrolase-family-protein	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	7.00558e-165
NZ_CP029191.1\|WP_150183131.1\|1431196_1432954_+\|S8-family-serine-peptidase	gnl\|CDD\|173792	cd04843, Peptidases_S8_11, Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.17302e-105
NZ_CP029191.1\|WP_150183123.1\|1427700_1428318_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239027	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.28436e-92
NZ_CP029191.1\|WP_150183150.1\|1443698_1444679_+\|aldo/keto-reductase	gnl\|CDD\|223739	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion].	6.40787e-101
NZ_CP029191.1\|WP_150183152.1\|1444675_1446925_+\|DNA-helicase-RecD	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	1.11204e-35
NZ_CP029191.1\|WP_150183119.1\|1425497_1426259_+\|nucleoside-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	7.13725e-77
NZ_CP029191.1\|WP_150183133.1\|1432987_1433581_+\|hypothetical-protein	gnl\|CDD\|130689	TIGR01628, Polyadenylate-binding_protein_3, polyadenylate binding protein, human types 1, 2, 3, 4 family. These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.	5.71324e-07
NZ_CP029191.1\|WP_150183125.1\|1428310_1429072_+\|oxidoreductase	gnl\|CDD\|99813	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	3.03028e-86
NZ_CP029191.1\|WP_150183148.1\|1442476_1443532_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	1.91182e-129

>NZ_CP029191.1|WP_150183135.1|1433679_1436742_-|DUF5110-domain-containing-protein
MRSPTRFRPAVAVALLGLLAVFAGPGGGSAQAAGEPAATTVGDVTGFDAEEAVYRLSAGDAEARVSFVSAETFRLELAPDGKFTDPTGDDIVLPQGKAPRTKWADKGDRYEMSTAEVTLRAYKSPLRFALYRSDGSRIWAESKGLTWTKDGTTQSLARGAGEQFYGGGMQNGRGNTSHRGKKVEVSVDYDWDDGGHPNSVPFYLSSEGYGVFRNTYAPNTYDFAEPVTATAKEQRFDAYYFAGRGSDAAKDVIGQYTKLTGKPFLPPVYGMEIGDADCYLHNANRGERHTLDALKVADGYVQNDMPNGWMLVNDGYGCGYEDLAETAQGLAERKMKMGLWTEDGLDKIAEQVKAGQRVAKLDVAWVGDGYKKALDGCKDAYRGIEDNSDARGFTWAPESWSGAQRCGVQWSGDQSGSWEYIRWQIPTYAGSTMSGLAYTTGDVDGIFGGSPKTYVRDLQWKMFLPVTMTMDGWAASDKQPFRQGEPYTSINRKYLKLHEALLPYLYSYGHEATSTGVGAVRPLALEYPHDPEAATDAAKYEFLTGEDFLVAPVYKDTTTRDGIYLPKGTWTDYWTGRTYQGPTTIDGYSAPLDTLPLFVRGGATVPMWPGGIRSYQDRTADSPLAWDVYPQGNSSFELYEDDGVTRQHRDGKYATQRAEVRAPHSGAGDVRVRIGASKGTYKGKPGSRAYAFTLHTGDAPSRVEVGGQRLPRFASKGAYDRARVGWFYDRDDRGGVVKVKTAALRTDRGFELRLDDTSAVGGAVPGAPATVGVPAGQELGAGTPGKVAVDITAGTKDATGVEATLDVPAGWTAGTAKADRIPAGTTRRVEVALTPAKDADISEQPLTATVRHRSAGQDRTAVQRFALGVMPEAPSQDTWASDMKWLKSTNGYGPAERDRSNGESGADDGHTLTLAGKTYEKGIGTHADSVIEVYAGGRCTTFTADVGIDDEINGYGEVAFSVEADGKVLWTSPKVTGASATVPVDVDVRGARHVELKVSDTNGSKSGDHADWAAARFSCA
>NZ_CP029191.1|WP_150183133.1|1432987_1433581_+|hypothetical-protein
MSTTPQMSQLGQQQGRQYGPQQQYGPQQYGPQQYGQQQYGSQQYGQQQSPSTAPPQQSQQQYGMQGQQGMQGQQGMQQVPPQLRQQLQQLGQQQPFQNLLQQFGREQEQQIPQAQAPEISTQALASNVATAFWDVVEPLPGQAYILYLHVDNAWRAFVDPNPHTHDEVQEAFAYGHQVIGYYDTNNPGYLLAIVITK
>NZ_CP029191.1|WP_150183131.1|1431196_1432954_+|S8-family-serine-peptidase
MTEQADPARDPGAGGPGPDGMGFTYREAQPELIVVARPEARLRAGERDVRSASGSDVSALNMFLSDEQLTLEPLFGNEDRLRAAAPSAAGEDDVPDLALFYRVRGGDDRPDELRARMAALPGIDTAYVKPGAVPASIEPSPTQPHDLDEATRRRKEGMPATPDFTSRQGYLKPAPEGIDARWAWQRLGGSGEGVTVVDIEGAWQLRHEDLAAKLAGVVVGTPIQDLAWRNHGTAVIGVIGGDRNSLGITGIVPEAVTAAASFQPLGTAATIHAAAERLNRGDIILVELHRPGPKYDFGPRDDQKGYIAIEWWPDDYAAVRYATAKGVLVVGAAGNGAESLDDAVYERRPDGFPSWWRNPFNPSNRSSGAVLVGAGAPPPGTHGRDHGPDRSRLAFSNYGARVDAQGWGRETTTTGGFWDRPGDLQGGADEIAWYTDTFSGTSSASPIVVGALASLQGMLKAAGQQPMTPERARATLRATGSPQQDAPGRPASQRIGNRPDLKAAVTNLLPSAVGSGQAERYWDELLPYPPELPPRLRLFVAGEWRNLDNPSPETRQAVHAAFAGGRPDVRVWFSDDEVVGLVVTG
>NZ_CP029191.1|WP_150183129.1|1429946_1430954_+|PAC2-family-protein
MIELEGVPELVDPVMVAAFEGWNDAGDAASAAVAHLDKEWKGEVFAALDAEDYYDFQVNRPTVWLDGGVRKITWPTTRLSVVRVGGDKPRDLVLVRGIEPSMRWRSFCNEILGFAHELGVELVVIMGALLGDTPHTRPVPVSGVTSDPDLARTMDLEETKYEGPTGIVGILQEACTHAGVPAVSLWAAVPHYVSQPPNPKATLALLNRLEDLVGLRIPLGELAEDARAWQVGVDQLAAEDSEVAEYVQSLEEARDTAELPEASGEAIAREFERYLRRRDGGEGGAGGAGGAAYLRDSPSDRTRPPKPKPTQRPGQGAEDGEGENGDSSPPDSSDD
>NZ_CP029191.1|WP_150183127.1|1429123_1429795_+|FCD-domain-containing-protein
MAVTDEAIEKIKDMIVSGALRPGDRLPKESELAAELGLSRNSLREAVRALALIRILDVRQGDGTYVTSLDPQLLLEALSFVVDFHRDDTVLEFLAVRRILEPAATAMACAHISDTELDALSEQLDALGAAPSVEELVAADLEFHRRIVRTSGNSVLCSLLDGLSGPTTRARVRRGLTQEDAVSRTLHEHRAILTALRDRDADAARSWATVHIASVEQWLRTTL
>NZ_CP029191.1|WP_150183125.1|1428310_1429072_+|oxidoreductase
MTEPQTRQDRFVPPTAFAVPGRIEASNRSAAVWQRATVVEIRRETPLVSTFRLKVPDWQGHVPGQHLMLRLTAEDGYVAQRHYSIASAPDGSGEIELTLDHVPDGEVSGHLHTVAHVGDTVEVRGPLSGFFAWPGDRPALLLGAGSGVVPLMSMVRHQRLAGLDVPVRLVMSARTPADLIYADEYADETTVVLTRSEGRLNAAHLAPFLGAEGQPEGGWEAYICGSNGFAEHASRLLVEGGQPVDRIRIERFG
>NZ_CP029191.1|WP_150183123.1|1427700_1428318_+|molybdopterin-dependent-oxidoreductase
MTFEPTRGFTGRARAADRDPRLPPGQYDAGDGWPVLSAEVTPRLAAADWTFRVDGLVAAPHTWTWDEAHALPASEYRGDIHCVTSWSKFGVRFGGVSLDTFLAAARPLPTATHVVAYSHTGYTSNLPLSDVTDGKAWIVWEYGDGPLPAEHGGPARLIVPHLYFWKSAKWVAGLRLLDRDEPGFWEQNGYHHRGDPWAEERYAGD
>NZ_CP029191.1|WP_150183121.1|1426309_1427704_+|amidohydrolase-family-protein
MHPTDLPAQDRGGSIDLLVHGGDVLTVDAEGTVVTDGAVAVRGGRVVEVGPAERLRAAYEAAEEIDARGCLVLPGLINTHTHLAMNLMRGIADDVTLQGFLGRVIPREAAILSPDTVATAMRAAVAESVRGGVTTALDMYWFHEAAEEAARDAGWRLLTGPTFMDVPGPPDGRPYEERLGWATAHLKAYVPAPGTRPVVCAHSAYTLNPAQLTEITALAREHGALLHIHASENAAEVANVVELHGMRPVELLDSLGVLGPDTLLAHAVDLTDAEIATLARTGTAVAHCPVSNLKLGCGIARVPALLDAGVTVGLGTDGAVSSNTLDLLGAVKIAALVHKAGGDPTAVGAEQAVRMATVESARALGLGDRLGSLEPGKQADLIVLDLDRPHLAPRHDPWSTLAYAASAADVRDTVVDGRVLMRDRTLLTLDERAVLRALQDAATATEVTSTPSEPAPTPEVTPTA
>NZ_CP029191.1|WP_150183119.1|1425497_1426259_+|nucleoside-phosphorylase
MTSPIDALPITRVPRTGLPAHAVVVGDPGRAAAVADLLADAKEVSYHREYRTFTGTWQGTPVVVASHGVGAPGAILLFQELAEAGVSTILRLGTAGAIRPGIRDGDLVIADAAVRDDGVTQQLIPAEYPAFSAPEAVLALQRAARAAGAPYHRGVVWTRAAFQPGFLPLPGEAYAAAGIAAIEMELSALYVFASTHGLTAGGALVVDGANADELVDKDATGGYDPHRAVVADGVDRGARITLDALRLLASTER
>NZ_CP029191.1|WP_150183117.1|1424598_1425501_+|ABC-transporter-permease
MSVDSALFHSALLALTPILLAALGGAVCERAGVFNIGLEGMMLIGCFSAVAGSWFTGSAWLGVLFAALSSAAYAMILAVGTISLRGDAVVLGVALNLLAVGLTGFLLRSVFGVQGTFSDPGLAGLGTVDLAFLGPILSGHSPLVYVSWAAVAVASVFLARHPWGLRLRGVGEAPDAAATLGVSPAKYRYAAVLTGGLLCGLAGAQLALGNVTLFSENMTAGRGWIAVVAVMLGRALPLGVLLAGLLFGIAEAVGFRLQGNGLPPQATDAAPYVVTLVALFLSTARRRRRKHPESLVGAST
>NZ_CP029191.1|WP_150183137.1|1436963_1438193_-|cysteine--1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside-ligase
MHAWPASEVPALPGKGRDLRIHDTATGGLVTLDPGPVARIYVCGITPYDATHMGHAATYNAFDLVQRVWLDTKRQVHYVQNVTDVDDPLLERANRDGKDWVELAEGETALFREDMTALRLLPPKHYIGAVEAIPGIVPLVERLRDMGAAYELEGDIYFSVESDAHFGEVSGLDTAAMKLLSAERGGDPERVGKKNPLDPMLWMAARDGEPSWDGGSLGRGRPGWHIECVAIALDHLGMGFDVQGGGSDLAFPHHEMGASHAQALTGEYPFAKAYVHAGMVGLDGAKMSKSKGNLVFVSQLRRDGVDPAAIRLALLAHHYRADWEWTDAVLAEAVERLGRWRAAVSRPDGPSAEALVEEIREALANDLDAPAALAAVDRWAARQGADGGADEGAPGVVSRAVDALLGVAL
>NZ_CP029191.1|WP_150183138.1|1438260_1439085_-|SCO1664-family-protein
MPAPERIPAGSVTVADPLALLTHGELTVRGRIREASNAVLYCTVAYEGQEAACVYKPVAGERPLWDFPDGTLAQREVAAYEVSLATGWDLVPPTVLRDGPHGEGMCQLWIEASGDAELLALVDGDEPGEGWKAVGLAQVDEERTALLVHADDVRLRRLAVLDAVINNSDRKGGHLLPSDGHLYGIDHGVTFHAENKLRTLLWGWAGEPLTDEALKALQGLQDGLAEGAGLAGRLAGLITPRETEALRARVAALLKSGRHPEPSGEWPAIPWPPV
>NZ_CP029191.1|WP_150183140.1|1439048_1439639_-|DUF3090-family-protein
MSRQVFLYDPPERFVAGTVGLPGRRTFFLQASAGVRVTSVALEKTQVAALAERMEELLDEVVRRSGGNAPVPAVAPSEVSDSAPLDSPVEEEFRVGTMALAWDGEEERMVVEAQALVELDADSEDDLAEAEERLLQDEENGPPMLRVRLTGAQARAFAKRALDVVNAGRPPCPLCSLPLDPEGHVCPRQNGYRRGA
>NZ_CP029191.1|WP_150183142.1|1439712_1440399_-|MSMEG_4193-family-putative-phosphomutase
MPTLILVRHGRSTANTAGLLAGWTPGVALDERGSAQAAALPGRLAALPISEVVTSPLQRCRETVAPLLAARPGLQEHTEDRIGECDYGDWSGRKLAELTDEPLMEVVQRHPSAAAFPGGESMRAMQTRAAEAVREWNARVEREHGEDAVYVMCSHGDIIKSLVAEALGLHLDLFQRISVEPCSVTAIRYTRLRPFLVRLGDTGDFASLAPREEPPGDDATVGGGAGAP
>NZ_CP029191.1|WP_150183144.1|1440460_1441462_+|magnesium/cobalt-transporter-CorA
MIVDCAIYRDGRRTEGPDDLSDALDQARAEGDAFVWIGLHEPTEKEFDRVTQEFGLHPLAVEDALKAHQRPKLEVYDDSLFMVLKPVVYEQDSDTVTSGEVMIFMGDSFVVTVRHGEGAPLGVVRHRLEAEPDVLKHGPTSVLYSIADASVDHYLEVADELQADLEVLEAEVFSPEGGSSSRNTASRIYRFKRQILEFRRATGPLALPVARLSGVNPLSPSVPFVDETAQPFFRDVNDHLTRVNESVEGLDRLVSDILSAHLAQMSVRQNDDMRKISAWAAMAAVPTMIAGIYGMNFDHMPELHWSWTYPAVILLMVVLEVVLYRMFKRRGWL
>NZ_CP029191.1|WP_150183146.1|1441463_1442252_-|ferritin-like-domain-containing-protein
MLSARSVFEEILDNDESFRLFCSIAASGEAQGGWENGRIAALVPETERALAPKIARHGADEDKHGRIFHALLKKRGLQPVEVPHDTDYTMLLEKHGIGLAHDKLKADEQLSVRDIVTYLAHSRVTEQRASEQMRLLLKYFDGHPDIGRAVRMISHDEDNHLAYCHEELLRFARAGHGRAIQHTLRACAHAEIRIHRDVSLAVMERMGRILHWPHAKRQLLTTGIHALYGYERAVGWRRMVSLEMPRRRDALGGPAEAATEFA
>NZ_CP029191.1|WP_150183148.1|1442476_1443532_-|LLM-class-F420-dependent-oxidoreductase
MQLGINLGYWGAGMDADNLAVAKEADKLGYAVCWAAEAYGSDAATVLSWVAAQTERIDVGSAIFQIPARQPAMTAMTAATLDSLSGGRFRLGIGVSGPQVSEGWYGVKFDKPLARTREYVEIVRKAMTRERLSYEGEHWTLPLPGGPGKPIKLTVHPQREHIPLYVAAIGPKNLEQTGEIADGALLIFPAAEHLEDTAIRHLRAGREKAGKTMDGFDVVPTVPLAVGEDTQVDALADMFRPYTALYVGGMGSRKQNFYNQLAQRMGYEKEAAEIQDKYLAGDKEGAAAAVPRQLIDSTTLLGSVDRIADRMQAYAAAGVTTLTLAPAGFTLDERLASLRAGTQALERAGLA
>NZ_CP029191.1|WP_150183150.1|1443698_1444679_+|aldo/keto-reductase
MEQRHLGRTGLRVSRIGLGTLTWGHTEENDAADLLKVFWEAGGTLVDTADVYGDGEAEYLIGRLIERLVPRRDLVIATKAGSVPDPERRFDGSRGHLLAALDASLSRLGTDYVDLWQVHAFDPGTPLEETLQALDIAVSSGRARYAGVADFCGWQLAKAATWQLAAPGTRTRLASTQMEYSLLQRGVEREVLPAARDLGVGLLPSSPLGRGVLTGKYRHSTPADSRGGSDHMAPFVAPYLDETAGHVVDAVATAADGLAATPLQVALAWVRDRPGVTAPIVGARNAQQLTAALSVETLSLPDEICRALDDVSAPVHRYPDHDWSTL
>NZ_CP029191.1|WP_150183152.1|1444675_1446925_+|DNA-helicase-RecD
MSTEPAAAEDPGAAAAEEAESPGAEEAAPDAEATTDTGESESEGQEADKDKAEGESTELSEAEAEIAAQRELRERIEQRKASKQGPIAAGTKLSGTAADLLAAVRAVESGEKPVASAFQEPEPARRPAPARAPEPVRPQQPVADRAPAQETVEAVRAVLAEGGAPPALAEPTAAVLGDGADGHLRADPWQLLRVTGVRPEQADGFARALLGAECGPDDERRGRAITVWLLEQAAVAGHTALDAAALHAALGQRAVPDPDAAVQGALAEGDALVFQDALEGTEVPVQRTDDGAARNDGENEKDGEGGEDAEPERPVRVLIGLERYALAEESLADGLARLINSLPKETDDTAESQGPDWEAAAAQTSGSAAELIRAVAGHGLVLHSGGEEARAEPAALVTAAAALGLRVCAAAHSADGRRRLARATGADGADNTAVTVAGLLAGDEGPGRDAEGALALDLLVVLDAPQLDVETAAMLVESLPDGARLVLSGDPGVLWSAGPGRVFADLLSARCCPQVVSRTPDPGPVGELTSGIGIGELNQVEAPGKEVVLVPVRDPAEAIHRTVQLVADSVPRAIGVPAEHTQVITPGHGGAAGTRALNAALKERLNPGPGRFGGFDPDDRVAHVPAPGRTTLGRVVRADAEGLHLECGGAPVVVPKERVEREVRHGWALTAHQATGQRWPAVVVVLPGDAAEALSRPWVYTAFSRAERHLSVVQGVEQALPRAVAERLWKDRTTRLQTLLRPQVPTTTA
>NZ_CP029191.1|WP_150183154.1|1446998_1447769_-|hypothetical-protein
MSDAAQPTAAEVRAAAEAVKTALDRHLAAVERRSGEDDPAVYEAFNELAAAAEEYDELLYDRYDEVTPFEIPGTDDALPPYQGPDEANALSVLLRRDYTVVEPQRLLAQAQRVADLEAGGTGGAGSADTVHSALGVLFGEFEPDEISSRHKEFGLEEGDSTLWVTAVDTPAEPGEWLDAPFDQADPHRVVCRFDVSVVFDDELDDDGLEGLDTDVDMDIDPDVPVPLDDTDDTDDTVDTEDADDVGRPSGARQAGR

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Crispr_ID: NZ_CP029191_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_3

2101556-2101637

Orphan

Consensus_repeat	Method
GGCGCGCAGTTCCCCGCGCCCCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_3

>merge|NZ_CP029191|3|2101556-2101637|CRISPRCasFinder
GGCGCGCAGTTCCCCGCGCCCCTGGCTGCGCCCTCGTCTGCGGGTTCGCTGTGGCTGGGCACGCAGTTCCCCGCGCCCCTGG

>NZ_CP029191|3|3|2101556-2101637|CRISPRCasFinder
GGCGCGCAGTTCCCCGCGCCCCTGG	CTGCGCCCTCGTCTGCGGGTTCGCTGTGGCTG
GGCACGCAGTTCCCCGCGCCCCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150183715.1\|2106229_2107456_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|376754
NZ_CP029191.1\|WP_150183709.1\|2101694_2101973_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183708.1\|2100244_2101468_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP029191.1\|WP_150183701.1\|2092603_2093578_-\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP029191.1\|WP_150183711.1\|2103057_2103684_+\|DUF3043-domain-containing-protein	unknown	unknown	gnl\|CDD\|378611
NZ_CP029191.1\|WP_150183710.1\|2102001_2102802_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP029191.1\|WP_150183703.1\|2094102_2095602_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183717.1\|2108689_2109769_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234636
NZ_CP029191.1\|WP_150183713.1\|2104603_2105662_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP029191.1\|WP_150183714.1\|2105729_2105966_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183718.1\|2109974_2111741_+\|DUF2156-domain-containing-protein	unknown	unknown	gnl\|CDD\|235095
NZ_CP029191.1\|WP_150183704.1\|2096307_2097504_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NZ_CP029191.1\|WP_030933606.1\|2095694_2096051_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NZ_CP029191.1\|WP_150166945.1\|2096010_2096250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150183705.1\|2097579_2098071_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029191.1\|WP_150183707.1\|2099567_2100248_-\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP029191.1\|WP_150183716.1\|2107475_2108531_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NZ_CP029191.1\|WP_150183712.1\|2103758_2104466_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP029191.1\|WP_150183706.1\|2098146_2099364_+\|Bcr/CflA-family-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP029191.1\|WP_150183702.1\|2093712_2093937_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150183715.1\|2106229_2107456_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|376754	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.	9.97721e-61
NZ_CP029191.1\|WP_150183713.1\|2104603_2105662_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	6.61554e-77
NZ_CP029191.1\|WP_150183708.1\|2100244_2101468_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.65521e-43
NZ_CP029191.1\|WP_150183701.1\|2092603_2093578_-\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	3.18591e-65
NZ_CP029191.1\|WP_150183711.1\|2103057_2103684_+\|DUF3043-domain-containing-protein	gnl\|CDD\|378611	pfam11241, DUF3043, Protein of unknown function (DUF3043). Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.	4.83599e-71
NZ_CP029191.1\|WP_150183710.1\|2102001_2102802_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	4.10199e-29
NZ_CP029191.1\|WP_150183718.1\|2109974_2111741_+\|DUF2156-domain-containing-protein	gnl\|CDD\|235095	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX.	0
NZ_CP029191.1\|WP_150183704.1\|2096307_2097504_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	5.47031e-159
NZ_CP029191.1\|WP_030933606.1\|2095694_2096051_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.38453e-50
NZ_CP029191.1\|WP_150183705.1\|2097579_2098071_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.20389e-13
NZ_CP029191.1\|WP_150183707.1\|2099567_2100248_-\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.19079e-63
NZ_CP029191.1\|WP_150183716.1\|2107475_2108531_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.90216e-23
NZ_CP029191.1\|WP_150183712.1\|2103758_2104466_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.65711e-18
NZ_CP029191.1\|WP_150183706.1\|2098146_2099364_+\|Bcr/CflA-family-efflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.01263e-87
NZ_CP029191.1\|WP_150183717.1\|2108689_2109769_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	1.46334e-135

>NZ_CP029191.1|WP_150183708.1|2100244_2101468_-|two-component-sensor-histidine-kinase
MTTLVRGRGWARTHPLAVDAALATAVLVCMVVGSFAEPNGEHGPTWGTRTPDAPSLVLMTLGALALVFRRRAPWCVLAATCAAAIVELLTGEPRAPVVMCAVIALFTVAARTDRSTTWRIGLVTMVGLTGIAMLSGGPLPWYAQENLGIFAWTGMAAAAGDAVRSRRAFVDAIRERAERAERTREEEARRRVAEERLRIARDLHDVVAHHIALVNVQAGVAAHVMDRRPDQAKEALSHVRDASRSALNELRATVGLLRQTGDPEAPTEPAPGLHRLDELVETFRNAGLPVEVALGQVGLDLAAAVDLAAFRIIQEALTNVQKHAGPDAKAEVSVVRVGPNVEVTVIDDGPGHGKGDGPNTDGGGHGLLGMRERVTALGGSCSAGPRYGGGFRVHAILPVTTAKGGTA
>NZ_CP029191.1|WP_150183707.1|2099567_2100248_-|response-regulator
MTIRVLLADDQALLRSAFKVLVDSESDMEVVGEASDGAEAVALAKSERADVVLMDIRMPGTDGLAATRMISADPSLAHVRVVMLTTFEVDEYVVQSLRAGASGFLGKGAEPDELLGAIRVAAAGEALLSPVATKGLIAKFLAQGDGQDGEGRARGERLDALTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESGLVRPRVE
>NZ_CP029191.1|WP_150183706.1|2098146_2099364_+|Bcr/CflA-family-efflux-MFS-transporter
MPLLTAALALLSFIGPLSTDMYLPAFPRMADELATDASGVQLTLTAFLVGMTLGHLVFGPLSDRYGRRRPLLVGAVVCTVGTALCAVAPSLGWLVALRFLTGFSGAAGVVISRAVVSDVVQGAAAARLFGVLMTLAGIAPIIAPLAGGAVIGGFGWRAVFWVLAGVSALVTLAVVIGVPESLPARQRHTGGVRRTAGAVREVLGDRAYVGYTLAFTFGFGMLFCYIAGSPFLLQNVLGMGVGASSVAFSGGAVVATLSSAVGARLVGRVAPEALLRRGLSAMLAGSCGLLVLALGGLLSVAVCLPLLAVVCGGFGLVVANSAALALARVPGASGVGSALLGTAQSALGAVVAPLVGLGGEHTAVPLFLGMTLCAGCAVLSVFGCGRVVAGRAVPRAPGQTRRARH
>NZ_CP029191.1|WP_150183705.1|2097579_2098071_-|MarR-family-transcriptional-regulator
MTEQRNAENDEPDRRLFQHARELTPALYALSRVLRFQGMEEAGLWRLPPSELELLRYVHAEPGTTVSVLARELGLHASNVSATVRGLVNQELLEREKDPNDGRVVRLKPTLKAEQGMALIENAWAEIFADALAGLDDEQRAALAASVPALEALATALKERRTR
>NZ_CP029191.1|WP_150183704.1|2096307_2097504_+|quinolinate-synthase-NadA
MTTAQSPADSVTLDVQPTPLALLLLGREADPRSERGVECPGDLPSPSDPDLVERARAAKERLGDKVFVLGHHYQRDEVIQFADVTGDSFKLARDAAARPDAEYIVFCGVHFMAESADILTTDDQKVVLPDLAAGCSMADMATAEQVAECWDVLTEAGIAEQVVPVSYMNSSADIKAFTGKHGGTICTSSNAKRALEWAFEQGEKILFLPDQHLGRNTAVRDMGLSLDDCVVYNPHKPGGGLTAEQLRDAKMILWRGHCSVHGRFSLESVEDVRARIPGVNVLVHPECKHEVVAAADYVGSTEHIIQTLEAAPAGSKWAIGTELNLVRRLANRFAAEDKEIVFLDKTVCFCSTMNRIDLPHLVWTLESLADGKLVNQIEVDRETEQFAKLALERMLALP
>NZ_CP029191.1|WP_150166945.1|2096010_2096250_+|hypothetical-protein
MPSLTVVVSSDTDICFSPGLYGDCLPTVATGGAADSFRAERLRLTPSCSHMARRGTAGRRTANASHRHYGHRQTDTKRL
>NZ_CP029191.1|WP_030933606.1|2095694_2096051_-|iron-sulfur-cluster-assembly-accessory-protein
MSVSDETTTVSDGILLSDAAAAKVKGLLEQEGRDDLALRVAVQPGGCSGLRYQLFFDERSLDGDVVKDFDGVKVVTDRMSAPYLGGASIDFVDTIEKQGFTIDNPNATGSCACGDSFS
>NZ_CP029191.1|WP_150183703.1|2094102_2095602_+|hypothetical-protein
MSTERSDSEASEPQRRRSRLAVASVAATVLLVGGGGAYFAASASGGGGSDGAPAGDGGNPPPLALDGYPAADRQGGDDKSGTGGTGDSHGIAPGEPDPNGVRYRATTQLPEGPESASVYHARGEVTAAEVGRLAKALGVDGTPTSQDGTWRVGHSNDGSGPSLQVNKQAPGTWTYAAHGTGGTDNCLRGKPCSRSSTAPNGETGDAVGEQAAKDAAAPVLKVLGQDDAKLDARQLMGAVRVVNADPKVDGLPTYGWSTGIQVGAGGEVVGGSGQLKAPEKGAKYPVISAQETLDRLNRSGVEGHGGIGGCATPVPHADDETKSEGGSGPEQAPCKPSSEAPKPQPVAVSGATFGLATHFVDGKQTLVPSWLFDVKPQGAQDTFTVTHPAVAPEYLTSPSTPGTPSTPGTPNTPADKTRLTSYTADGKSLTVHFWGSACGEYAASAREDGDRVKVTVEETGKTGDVCVMMAKDLKKKVTLDKPLGDRKVVDSAGETVRRK
>NZ_CP029191.1|WP_150183702.1|2093712_2093937_+|hypothetical-protein
MTVIPKDVVLHRRATAAEAPESMESLRGDCARMAPHWAVPAATAAAPVPPSLIHGITVPLSSARLIGEMSEYGD
>NZ_CP029191.1|WP_150183701.1|2092603_2093578_-|carbohydrate-kinase-family-protein
MRIAVTGSIATDHLMTFPGRFADQLVADQLHTVSLSFLVDALDVRRGGVAANITFGMGQLGTRPILVGAAGSDFDEYRAWLDRHGVDTASVRISETLHTARFVCTTDADHNQIGSFYTGAMSEARLIELKTVADRVGGLDLVSIGADDPEAMLRHTEECRSRGIPFAADFSQQIARMEGEEIRTLLDGATYLFSNEYEKGLIESKTGWTDAEILSRVGHRVTTLGANGVRIESAGKDPIEVGVPEEEAKVEPTGVGDAFRAGFLSGLAWGVSHERAAQVGCMLATLVIETVGTQEYELRRSNFMDRFTKAYGHEAATEVKPHLA
>NZ_CP029191.1|WP_150183709.1|2101694_2101973_-|hypothetical-protein
MIVRIMGEGQVKLADSHFAELNKLDDELLEEMEGGDEPGFRRTLHALLDKVRELGTPLPDDALEPSQLILPSPDATLSEVRDMLTDDGLIPG
>NZ_CP029191.1|WP_150183710.1|2102001_2102802_-|PspA/IM30-family-protein
MSGVMKRMGMIFRAKANKALDRAEDPRETLDYSYQKQLELLQKVRRGVADVATSRKRLELQLTQLQKQSSTLEDQGRKALALGREDLAREALSRRAALQQQVTDLETQHQTLQGEEEKLTLAAQRLQAKVDAFRTKKETIKATYTAAQAQTRIGEAFSGISEEMGDVGMAIQRAEDKTAQLQARAGAIDELLASGALDDSSGLAKDDIQTELDRLSGGTDVELELQRMKAELAGGSSGGQQAIEGGKGQAQPHSQQPQDTPRFDKQ
>NZ_CP029191.1|WP_150183711.1|2103057_2103684_+|DUF3043-domain-containing-protein
MSPHPVPLDFVFRSRSKEEKAPAVQAPVTDSKQPRDPQAPKGRPTPKRAMAQSQRRSVTNTPTTRKEAAKRQRDERRTQMAKQREAMASGDERFLPARDKGPVRKFARDFVDSRFCVAEFFLPLAVIILVLSIVQVPQLQNVALLAWLFVIVLIIVDSIATGFRLKKRLNERFPAENKKGAVAYGLMRTLQMRRLRLPKPQVKRGERP
>NZ_CP029191.1|WP_150183712.1|2103758_2104466_+|methyltransferase-domain-containing-protein
MARQLDEQIIGRFPVGQRLRVLDVGMGQGTQALRLARAGHMVTGVEQDSAMIAAARTALAREPEGIQGRVRIVEGDGHQTGVHFLPGSFDVVLCHGVLMYVEEPDALLAGLARMLASGGLLSLLVRNAEALAMRPGLAGDWSGALAAFDSVTYRNRLGIDARADRLDALTSALAGIAAPLQAWYGVRVFTDTAADGAALPPEGELQALLAAEERAGRTDPYRRVAALLHLCGVRD
>NZ_CP029191.1|WP_150183713.1|2104603_2105662_+|PDZ-domain-containing-protein
MTASRIPAVSAACVAALAALALVGGCSSSGSGDSGRSTTQAAPAAASDLQDDYQKVIKDVLPSVVQIDASEGLGSGVVYDDKGHIVTNAHVVGKEKRFKVTTATGEQALTADLVASYPEQDLAVIKLSDVPDGLKAAEFGDSAKAEVGQIVLAMGSPLGLSSSVTQGIVSATGRTVSEGRSGGGTGATIANMVQTSAAINPGNSGGALVDLDGKVIGIPTLAASDPQMGDSAAPGIGFAIPSSMVKTVADQIIKSGKVTDSGRAALGITGRTVLGDDYKPAGVAVVEAPEGGAAAKAGLAAGDIITRLGDDEITTINSLSEALASDKPGQKAEVTYMRDGTEQTADVTLGEI
>NZ_CP029191.1|WP_150183714.1|2105729_2105966_-|hypothetical-protein
MAAWTWRFEKADGTEVQPAVQPEEFTTQGDAESWIGEYWKALAEGGADQVTLFEDTREIYGPMSLHMEGAEESEDASA
>NZ_CP029191.1|WP_150183715.1|2106229_2107456_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MELTLLGTGAPGGLPLPDCPCAACATALGPAARAATALLVDGVLLLDLTPGAAFAAARAGHSLGGVRQVLLSHPHDGPAVEVPAGLPQPGRVADGRELALLTGHRVRTVALDAPGSGYEVTGPDGERLLYLPPGGAPAGLGAGNGAAQGHGARRPYEMVVADVLGRPDGLARLRAAGAVGPTTDVIAVHIGHEAPPGPELTRRLAAAGARAVPDGSTLVIGAYEDVPDVPRRTLVLGGARSGKSVEAERRLEAFPEVLYVATGGTRNGDTEWARRVSVHRERRPGSWRTTETCDLVPLLAEDGPPLLVDCLSLWLTHVMDEVKAWDDDEWAGGGERELRRRVVELADAVRATRRTVVAVSNEVGSGIVPATASGRRYRDELGRLNTLFAAECEHVLLVVAGQALALRG
>NZ_CP029191.1|WP_150183716.1|2107475_2108531_-|methyltransferase-domain-containing-protein
MTTDAVAQRVAARRSGYLAELAEGTERFHEPRRTDCPWCGSERLRARLRTADLVQHKPGRFRIDRCGDCGHFFQNPRLTPEGLAFYRRDAREGPALPRLSGARVRARAHVRARALGALDEPECWLDVGTGAAHFPALARQVLPYTSFDGLDAGAGVLEGLRRGRIEEGHRGSLTTLAAPLAGRYDALSMFHTLQHAPDPRAELRAARTVLRPGGHLMIEAPDPQCRYARLLGKWWASYGQPRHLHLVPLANLLAELEELGFTVVGVERRAPHVPLDLASAVALFVNGRIPAPDVPWRAKAVPPLRLRLRQAAWWATVPLLLLARALDTLLSPVLTRTGFSNTYRVIARRGA
>NZ_CP029191.1|WP_150183717.1|2108689_2109769_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MSSLNLDDFTDLIERPDGGVRRDAEERRERQSVPPGSLGRLDELGEWLAAAQSAVPVRPVERPRVVLFAGDHGVSELGVSARPAGSAAGLVRSVLAGETPAAVLARRLEVPVRVVDMSLDCDPAELPAEVAGHRVRRGSGRIDVEDALTAEEAEQALRAGMAVADEEADSGTDLVVLGDVSVGGTTPAATLVAALCGTDASVVTGRGGEPIDDLAWMRKCAVVRDALRRARPVLGDQLELLAAVGGADVAAMTGFLLQCAVRRTPVILDGVVAAAAALVAQRVAFRAPDWWLAGHDSGEPAQNKALDRMALEPLLSHGVKVGEGAGALLALPLVQAAAALAAELPERKPEATEEAATEG
>NZ_CP029191.1|WP_150183718.1|2109974_2111741_+|DUF2156-domain-containing-protein
MGDEQVVAGRQKSRTVIQRRAAGFAVWYLRAVTFINFLSAVWVSLGQDLRQHNTENYFTPYLLTAGFASGAFTLFLAITMRRRKRAAWILNLVLGGLFLLLFAFAMTFPEIRAYAQNWISLILTAAFVAALVVGRREFYAKGDRSNPKLASAVAAGGLLVTSLIAALLVTVTNTAHDDYRSTFLDRWRYGTMRLVSLAADDQRFEGITTPGWVNVAINILSALLLCAVLYAAFRSRRAVDPLTEDDEERLRALLDRHGDRDSLGYFSLRREKSVVWSPTGKAAVAYRVVGGVSLASGDPIGDPEAWPGAIEPWLEEAREHGWIPAVMGASEEAGTIYARHGLDALELGDEAIVEIDEFTLEGRAMRTVRQAYNRVKRAGYTVRIRRHEDIPADEMAALLERADDWRDGATERGFSMALGRLGDPADGRCVMLECTDGDGVLRALLSFVPWGPHGLSLDLMRRDRDAENGLMEFMVIELLQRAPEIKITQVSLNFAMFRSVFERGSRLGAGPVLRLWRSLLSFFSRWWQIESLYRANAKYRPIWEPRFLLFEKSVDLLRIGVASGRAEGFLEAPGLPKWLHRKHLESRR

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Crispr_ID: NZ_CP029191_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_4

2631836-2631943

Orphan

Consensus_repeat	Method
GGCGTCAGCACGCGCGCGTAGAGCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_4

>merge|NZ_CP029191|4|2631836-2631943|CRISPRCasFinder
GGCGTCAGCACGCGCGCGTAGAGCCACGTCGCGGGGATGACGAAGAGGACCCGGCCCAGCCAGGCGATGCCGTGTCCGATGGGCGTCAGCACGCGCGCGTAGAGCCAC

>NZ_CP029191|4|4|2631836-2631943|CRISPRCasFinder
GGCGTCAGCACGCGCGCGTAGAGCCAC	GTCGCGGGGATGACGAAGAGGACCCGGCCCAGCCAGGCGATGCCGTGTCCGATG
GGCGTCAGCACGCGCGCGTAGAGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150184093.1\|2632884_2634810_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_CP029191.1\|WP_150184090.1\|2624218_2625571_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197269
NZ_CP029191.1\|WP_150184094.1\|2634860_2636426_-\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214880
NZ_CP029191.1\|WP_150184089.1\|2621854_2623303_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NZ_CP029191.1\|WP_150188176.1\|2632323_2632815_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226489
NZ_CP029191.1\|WP_150184091.1\|2625793_2630098_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP029191.1\|WP_150184098.1\|2640595_2641549_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP029191.1\|WP_150184096.1\|2637681_2639856_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP029191.1\|WP_150184086.1\|2617531_2618020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150167684.1\|2623440_2623695_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP029191.1\|WP_150184099.1\|2643034_2643448_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP029191.1\|WP_150184100.1\|2643519_2643885_-\|DUF4233-domain-containing-protein	unknown	unknown	gnl\|CDD\|379420
NZ_CP029191.1\|WP_030362602.1\|2641712_2642732_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP029191.1\|WP_150184097.1\|2639908_2640583_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_CP029191.1\|WP_150184095.1\|2636485_2637682_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP029191.1\|WP_055566950.1\|2623709_2624030_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP029191.1\|WP_150184088.1\|2619676_2621767_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184092.1\|2630329_2631124_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|378393
NZ_CP029191.1\|WP_150184087.1\|2618235_2619363_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP029191.1\|WP_150184085.1\|2616150_2617443_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150184093.1\|2632884_2634810_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP029191.1\|WP_150184090.1\|2624218_2625571_-\|hypothetical-protein	gnl\|CDD\|197269	cd09172, PLDc_Nuc_like_unchar1_1, Putative catalytic domain, repeat 1, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium. Putative catalytic domain, repeat 1, of uncharacterized hypothetical proteins, which show high sequence homology to the endonuclease from Salmonella typhimurium and vertebrate phospholipase D6. Nuc and PLD6 belong to the phospholipase D (PLD) superfamily. They contain a short conserved sequence motif, the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), which characterizes the PLD superfamily and is essential for catalysis. Nuc and PLD6 utilize a two-step mechanism to cleave phosphodiester bonds: Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit. However, proteins in this subfamily have two HKD motifs in a single polypeptide chain.	1.6741e-28
NZ_CP029191.1\|WP_150184094.1\|2634860_2636426_-\|CHAD-domain-containing-protein	gnl\|CDD\|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	5.03756e-46
NZ_CP029191.1\|WP_150184089.1\|2621854_2623303_-\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP029191.1\|WP_150188176.1\|2632323_2632815_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	9.15732e-44
NZ_CP029191.1\|WP_150184091.1\|2625793_2630098_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	1.56162e-170
NZ_CP029191.1\|WP_150184098.1\|2640595_2641549_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.15794e-67
NZ_CP029191.1\|WP_150184096.1\|2637681_2639856_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP029191.1\|WP_150167684.1\|2623440_2623695_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	2.39768e-47
NZ_CP029191.1\|WP_150184099.1\|2643034_2643448_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.44489e-77
NZ_CP029191.1\|WP_150184100.1\|2643519_2643885_-\|DUF4233-domain-containing-protein	gnl\|CDD\|379420	pfam14017, DUF4233, Protein of unknown function (DUF4233). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 147 amino acids in length. Proteins in this family are integral membrane proteins.	5.934e-26
NZ_CP029191.1\|WP_030362602.1\|2641712_2642732_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP029191.1\|WP_150184097.1\|2639908_2640583_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.874e-12
NZ_CP029191.1\|WP_150184095.1\|2636485_2637682_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	4.2435e-126
NZ_CP029191.1\|WP_055566950.1\|2623709_2624030_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	6.13167e-39
NZ_CP029191.1\|WP_150184092.1\|2630329_2631124_-\|DUF2344-domain-containing-protein	gnl\|CDD\|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	1.81867e-67
NZ_CP029191.1\|WP_150184087.1\|2618235_2619363_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
NZ_CP029191.1\|WP_150184085.1\|2616150_2617443_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0

>NZ_CP029191.1|WP_150184092.1|2630329_2631124_-|DUF2344-domain-containing-protein
MQRIRLRYTKRGRLRFTSHRDFQRAFERALRRAEVPMAYSAGFTPHPKVSYANAAPTGTGSEAEYLEIALTAPRDPDKLRELLDESMPAGLDIVDAVESRTSGLADRLTASVWELRLDGVEPAVAQRAAEQFTAAEKVEVQRRTKNGMRTFDAREAVVSLTVDDGPSAADTDRPSDKPCAILRLVVRHVTPAVRPDDVLSGLRAVADLAPPVPAAVTRLAQGLFDEETGTVTDPLAPDREADTAAPPTAAVPAAAKAPAPEGPR
>NZ_CP029191.1|WP_150184091.1|2625793_2630098_-|Rne/Rng-family-ribonuclease
MLEPNEPTEGSDNNTPSDTLPPRRRRRAASRPAGPPTGAADAAAPAIPATPASEEAPAAAAAEEPAQTPEAGEAPAPRARRRATRRASAPAGAPQAVEATEAAEPAAAPAPAADAAPEATPQEEAAEAPAARPRRRATRRASAPAGAPQAAAEETPAQAEPVAEEDAPKGRTRRRATRGTSAPAAEPRTTAEETAAVEEAPVAPAQAEPVAEEDAPKGRARRRATRGASAPAAEPQTPAEETAAVEEAPVAPAQAEPVAEEDAPKGRTRRRATRGTSAPAGAPQTAEHEVAAKFADQPAAAEKAPADEAAADAAEDEAPRGRRRRATRKAAATGFSAPSGHKARKAQRAEESGEDGGRKPARPAVAVFQAPVFAEPMFQTPERAAAAAAAEAAEDTPAEPEPTPAPVAEEETTPRRRRRRRAADEQPDAEEREPVKAAPVEEQQAEEPEEAAAEQAESDDDTEESGERQGRRRRRGGRRRRRGDSADQDNEQNDASGESDDADTSAAADQQEHSDEGASDEADESDEHDDTNGADDAAESGGAGSSSSRRRRRRRRRAGDSAEGEPGDGDPERTVVKVREPRKKEEREPGTGADEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQNGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKSKAASTSAPGLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWQTIHGYVSHVAPDLADRLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGKRKKRGRGGSDQHDHGHEHTHEVESADVAAEPETETAAEVAAEVAAPVALPEPEFVPDEELYSSAAEAEAAASSRGRSRRRATRRVSAPAGAPRAEAAPVEEAPQADALQADAAKDEAPKAAKKSGKKAKAAQKAERAAKAAAKDAEVPVVESDVARTEAPAVEDPMVGSPAAVEAAQEAHAEATAAPAAPEAPVDDAAPKGRTRRRAVRKATSPAGSPKAAEPEATEIVVTEAPKAEAPKVEQVAETATEAPVADAAPPRPRRRAVRKAAAPTASAEAAVMVVPSAEKPAEQPAEKAATESEAPAEDAAPAKKTARKTAAKKAPAKKTAAKKTAAKKTAAKKTTAKKATKATAKKAAAAEQAPSGVSVGADEA
>NZ_CP029191.1|WP_150184090.1|2624218_2625571_-|hypothetical-protein
MAHARLRGTGRHRAVKPVKGGRQAVALATVLSAAGIQAAGSVGTASADAGSTWTEGPIFNDPKGDVDAQHAIRTRLIELTNSAVPGSTIKVAVYHVWEAPVVDALVAAKNRGVHVQMLLDETSKSDRPTNTAYNTLKTALGTDKTKTSFVSLCPTGKSCLGDPKYGKSIMHNKFWLFSEVEGAKDVVVQTTSNSTPSAHTKFFNDALLLPNNPAMYDAYADYFTDMLGKRWADWDYRTVSSGRYKAYFFPRNGTVNETDTMYSVLNNVKCTYKDAAGVTQHTKVRAAIFKITRKQIADKLVSLKKAGCSVSILYAETDSAKSQGGTPGTWEQLHTSGGPSVRCYNDDRDPLHPGTRLTTPYIIHSKYLLVDGVYDGKRNKVSFTGSQNYTAPALRENDEAIVKIDDDSVHDTYRSHFDRTRAVAWPGSADKTDLCKGVKPLPPDGEKPVT
>NZ_CP029191.1|WP_055566950.1|2623709_2624030_-|50S-ribosomal-protein-L21
MYAIVRSGGRQHKVAVDDIVEVDKISTAKVGDTVELSTLLVVDGDAVTSDPWVLAGIKVQAEVVDHHKGAKIDILRYKNKTGYRRRQGHRQQYTAIKITGIPTAAK
>NZ_CP029191.1|WP_150167684.1|2623440_2623695_-|50S-ribosomal-protein-L27
MAHKKGASSTRNGRDSNAQRLGVKRFGGQLVNAGEILVRQRGTHFHPGSGVGRGKDDTLFALDAGAVEFGTHRGRKVVNIVPAA
>NZ_CP029191.1|WP_150184089.1|2621854_2623303_-|GTPase-ObgE
MTTFVDRVELHAAAGNGGHGCASVHREKFKPLGGPDGGNGGRGGDVILVVDQDVTTLLDYHHSPHRKATNGQPGAGDNRSGKDGQDLVLPVPDGTVVLDKQGNVLADLVGQGTTFVAGQGGRGGLGNAALASARRKAPGFALLGVPGEERDVVLELKTVADVALVGYPSAGKSSLISVLSAAKPKIADYPFTTLVPNLGVVTAGSTVYTVADVPGLIPGASQGRGLGLEFLRHVERCSVLVHVLDTATLESDRDPVSDLDVIEAELREYGAGLENRPRIVVLNKIDVPDGQDLADMVRPDLEARGYRVFEVSAVAHKGLKELSFALAELVGEARAAKPKEEATRIVIRPKAVDDSGFTVTREEVGGEPLYRVRGEKPERWVRQTDFNNDEAVGYLADRLSRLGVEEELMKAGARNGDGVAIGPEENAVVFDWEPTMMAGAEMLGRRGEDHRLEAPRPAAQRRRDREAERDEAQKEYDDFKPF
>NZ_CP029191.1|WP_150184088.1|2619676_2621767_+|hypothetical-protein
MPSAGLAPRRIVQLSALFAMFALFATQLATALIPYVPVFVAAAAANLALDIYLQYKQPGLLSLLGKIRFDVTVRQLLRDMLILVGLLRIDGIEPLAEQSPLTIGLLTFYALHFGCQAVAVLVRRARSLPIVTRNIDTSKLHLTAAPPRILSRRQAHRLLTFSVPTTVGLLVTAATTDAYWGGIGLAVSLVLIGAGALYLATWLLPKKRAKNDEKVMEWLDEWLAAYKPTVAMYFSGGTTSAYQANMWLSTLSELDGKPLIVLRERFMVQKIDATDVPIICFPKVATMFSLETSTLKMMLHPANAAKTSQVLRIPTIKHAFINHGESDKLSSCNPYAKAYDEVWVAGPAARDRYQLADIGVEDKDVVEVGRPQLSPIRPYAGAPTGAYTTVLYAPTWEGWDGNPGNTSVVLAGENIVRELLADPSVRLLYKPHPMTGSQNPAAGAANERIKAMILAANAKRSGARPGADAAAELVRRTADLDRLTARTFRKSADEQERMMLQGAPEGDQQAAVAAATAAWETAFWASFPEWEHQIITTARPAIFSCFNQADLLISDVSSVVSDWLSSEKPYAVANTAGMSEAEFRASFPTASAATILTPEADGVAALLKAVRAPELDSHAEARAELKEHLLGPSDPPSLVRFNAAALALSAKADARRVRMATRVDADIPGQRVAEEAAEEMAQDPSESNGAEDSVTA
>NZ_CP029191.1|WP_150184087.1|2618235_2619363_-|glutamate-5-kinase
MASARQSVAEARRVVVKVGSSSLTTASGGLDADRVDALVDVLAKSRDGGLREIVLVSSGAIAAGLSPLGLVRRPKDLARQQAAASVGQGLLVARYTASFARYGVRVGQVLLTSDDMARRAHHRNASRTLDQLLAMGALPIVNENDTVATDEIRFGDNDRLAALVAHLVHADLLVLLSDVDGLYDGDPAKPGTSRIDEVRGPTDMAHVEIGSAGKAGVGTGGMVTKVEAARIAAAAGIPVVLTSASHAGDALAGRATGTYFHRTGRRSADRLLWLQHASEPRGALTLDDGAVRAVVEGRKSLLPAGIAAVEGDFTAGDPVELRDAAGRAVARGLVNFDAKEIPLLIGRSTRDLAKELGPAYEREVVHRDDLVLLPG
>NZ_CP029191.1|WP_150184086.1|2617531_2618020_-|hypothetical-protein
MRRVRPGAASRGSAERALTSVAAGTAYESDPHQPRAADAGDGRDAEPTETPRLWHVTLSVSGKEAPLDEVRRGLEQLAHDHPFLLTSRYAPDHAEIRYWEEARDLHDAAAVALRLWGEHRQSAQLPPWEIVGLEVIGRDTYHQRIAEGYGPLPATPVGVHPF
>NZ_CP029191.1|WP_150184085.1|2616150_2617443_-|glutamate-5-semialdehyde-dehydrogenase
MTSLSPVSPYDNLSPVAQTAYRARGAAATLAPLPRSAKDDALLAIADALEVRTAEIVEANGKDTERAREAGTSESIVDRLTLTPERVRAIAADVRDVAALPDPVGEVVRGSTLPNGIDLRQVRVPLGVVGIIYEARPNVTVDAAALCLKSGNAVLLRGSSSAYGSNTALVRVLRDAVHGAGLPADAVQLVPGENRDSVRELMRARGLVDVLIPRGGASLIKTVVEESTVPVIETGTGNCHVYVDAAADIDMAVDILINSKAQRPSVCNAAETLLVHRDIADAFLPRALDALAEAGVTVHADERVITYAEGSKATVVPAATEDWETEYLSYDIAAAVVDTLEQAVEHIRLWTSGHTEAIVTTSQQAARRFTQLVDSTTVAVNASTRFTDGGQFGFGAEIGISTQKLHARGPMGLPELTSTKYIVTGDGHIR
>NZ_CP029191.1|WP_150188176.1|2632323_2632815_-|GNAT-family-N-acetyltransferase
MEEFRAEGRGGPDDDTTLGATLREYGRRWRDPAVFEAYVAEVRAAEHPTAAHSVPVTTLWYVDGAAYLGRITVRHTIATRFLREYGGHIGYDVRPTARRRGHATDMLRACLPHAARLGLESVLVTCDTDNIGSRKVIEAAGGTFEDERSGKLRYWIRTGAARV
>NZ_CP029191.1|WP_150184093.1|2632884_2634810_-|TIGR03960-family-B12-binding-radical-SAM-protein
MSAESVFPQLEALLPHVQKPIQYVGGELNSTVKPWESCDVRWALMYPDAYEVGLPNQGVMILYEVLNEREGVLAERTYSVWPDLEALMREHQVPQFTVDSHRPVGAFDVFGLSFSTELGYTNMLTALDLAGIPLEAKDRTVEDPIVLAGGHAAFNPEPIAEFIDAAIIGDGEQAVLDMTEIIRAWKAEGRPGGREEVLFRLARTGSVYIPAFYDVEYLPDGRIGRVVPNRSGVPWRVSKHTVMDLDEWPYPKQPLVPLAETVHERMSVEIFRGCTRGCRFCQAGMITRPVRERSITGIGDMVDKGLKATGFEEVGLLSLSSADHSEIAEVAKGLADRYEEDKIGLSLPSTRVDAFNVDLANELTRNGRRSGLTFAPEGGSERMRKVINKMVSEEDLIRTVSTAYGNGWRQVKLYFMCGLPTETDDDVLQIADMATKVIQKGREVSGSNDIRCTVSIGGFVPKPHTPFQWAPQLSSEETDARLEKLRDKIRGDKKYGRSIGFRYHDGKPGIVEGLLSRGDRRIGAVIRAVYEEGGRFDGWREHFSYERWMRCAEKTLPEMGVDVDWYTTRERTYEEVLPWDHLDSGLDKDWLWEDWQDSLDETEVEDCRWTPCFDCGVCPQMDTHIQIGPTGKKLLPLTVVK
>NZ_CP029191.1|WP_150184094.1|2634860_2636426_-|CHAD-domain-containing-protein
MAETKREIERKYDVTAGTELPDLTRVTGVAGVVDKGTADLDAVYWDTPDQRLAAASITLRRRTGGHDAGWHLKLPVSLAEGVRDEVHAPLSDTVPRALLGLVRARVREAELVPLLRLETTRHVRHLVDAEGAMLAEVALDTVHAERCAPGGERIGWSELEVELADDGDPQLLDKVDKKLRKAGVKRSMWSSKLTRGLRTTAPMDSEGKWTDDEGTGHAVVRLEDHTPVSSGDHVLARLRTQRDALLALDPAVRRDLPDSVHQMRVATRRLRSAFKSYRNVLDRTVTDPVGEELKWLAAELGVDRDQEVLTERLTERIGALPRTLLLGPVRGRLRIWTVARGAGSRRRTVAVLESKRYLALLDSLDALLAAPPLRPAADAPPEKALVKAALKDYARLATRIEHALSLPPGQDRDVALHEARKAAKRARYAGEAATPALGKPARKFAKRMKSVQKVLGDHQDSVVAREALRALAIQAHLAGESAFTWGLLYGQEEAAGKDRERELPEVWAEASRAKVRSALGS
>NZ_CP029191.1|WP_150184095.1|2636485_2637682_-|rod-shape-determining-protein-RodA
MTGNGFSVSGYGPERSGVSRLLARDSIVRRLDWPMLIAAIALSGIGTALVYSATRNRTELVGDDPYSFALKHVLNTGIGFALMIGTVWLGHRTLRTAVPILYGISVFLVLLVLTPLGATINGAHAWIVLGGGFSLQPSEFVKITIILGMAMLLAARVDAGDRDHPDHRTVLQALGLAAVPIMIVLLMPDLGSVMVMAMIVLGVLLASGASNRWVFGLLGTGVAGGVAIWQLGVLDDYQIARFAAFANPALDPAGVGYNTNQARIAIGSGGLTGTGLFKGSQTTGQFVPEQQTDFVFTVAGEELGFVGAGAILVLLGVVLWRACRIARETTELYGTIVAAGIIAWFAFQAFENIGMTLGIMPVAGLPLPFVSYGGSSMFAVWVAVGLLQSIKVQRPMSA
>NZ_CP029191.1|WP_150184096.1|2637681_2639856_-|penicillin-binding-protein-2
MTNIPETGRTPRVQIRLVIIQILVVSLLLTLGGRLWYLQVRNGDEYAEEASGNHVQQVVQPAVRGSILDARGVPIADNETRLVVSASRTDLMKMKDDGKAVLTKLADVLDMKAEEVEGKVRLCDAKTPQPCWNGSPYQPIPITDEATPKQALQIRERSEDFPGITAEPTAVRRYAAPGKSNTAQVLGYLSPVTDEEIKKAENTDSPFLRSDMVGRSGLERTYDKQLRGKAGVTRYEVDNLGRVIGEAESDDARPGANVVTSIDARVQAVAEYWLNDAMKKARKEFDKNTNENYKADAGAVVVMENKTGRVVSMASNPSYDPNAWVGGISGKDYARLTGKKSNYPLLNRAIQGQAAPGSIFKVIPTTAAVNAGYDFNGRYPCPSSYSIGGQTFKNYESKGHGSITLGQALEVSCDTVFYKLSHDQWRKDGGNKPVKDPKDWFYKTAHQFGLGKETGIDLPNEVTGRVPDRQWKKDYWKANKDAWCKQGKKSGGDYAERIAYENCLEGMKMRAGDSVNYSIGQGDTLVTPIQMATIYSAIANGGTLYNPTVGKAIVSADGRQVEEIAPKSHGKLPFDAKTQKDIDGALADVATRGTAAWRFQGWPQDKIPMHAKTGTAEVYGKQTTSWFATYTKDYTIVMTISQGGTGSGASGPAVRQIYNAIYGLDDEGKQDVKKALLPQPQKNLPKIKPDGSIHSPKIKPYKPAAPKPPAEQQLAGPPADWRRD
>NZ_CP029191.1|WP_150184097.1|2639908_2640583_-|rod-shape-determining-protein-MreD
MRFNRILLSATLVVVALVIQVSVLARLQLPGAVPDLVLLTVLGLALVYGHVGGALVGFGAGLLADLAPPADHAAGRYALVLCVIGYLAGLAKPDGGRLRSATGPLVVVVSAAIGSTLLYAGVGSLVGDTAARHVGLVGLLFTAALYDLLLAPFTVPLIIALARRADNDPLGENGPANKAADVSSGWLSSGTGLSIGNQRGSGLRAKAAKARVARAGRIKGVKRL
>NZ_CP029191.1|WP_150184098.1|2640595_2641549_-|rod-shape-determining-protein-MreC
MRDTRESRLLLVLLVAIAFALITVDIRGGEDSPVDGARRAAATVFGPVEEGMSSAVDPIGNAIGAVRDSGERHNRIAELERQNAALKAKLGSDDRNRSRVRQLDSMLKTAGAGQYGIKGAEVIGIGAAQGFSWTVTIDAGANDGIKRDMTVLNGDGLVGRVTTVGPNTSTVLLANDPDFTVGTRMEKTDELGFATGQGDRPLSVQLLNGKAEVKKGDRLVTFGSRKDKPFVPGVPVGEIVRVDPSGGDLTRNVYVKPYVGFTKLDIVGVVVEAPREDPRDTVLPKKPEKPKPTPTVTVTATPSGRPVDGADAGNDEQ
>NZ_CP029191.1|WP_030362602.1|2641712_2642732_-|rod-shape-determining-protein
MSFIGRDMAVDLGTANTLVYVRGRGIVLNEPSVVAINTNTGGILAVGAEAKKMIGRTPGNIVAVRPLKDGVIADFEITERMLRYFILKIHKRRYLARPRVVVCVPSGITGVERRAVIEASSQAGARQVHIIEEPMAAAIGSGLPVHEATGNMVVDIGGGTTEVAVISLGGIVTAQSIRVAGDELDNAIIQHIKKEYSLLLGERTAEQIKITIGSAYDMDADEHTEIRGRDLVSGLPKTVVISAAEVRKAIEEPVNAIVDAVKTTLDKCPPELSGDVMDRGIVLTGGGALLRGLDERLRRETGMPIHIAEDPLDSVALGSGKCVEEFEALQQVLDAQPRR
>NZ_CP029191.1|WP_150184099.1|2643034_2643448_-|nucleoside-diphosphate-kinase
MSQRTLVLLKPDAVRRGLIGEIIGRIERKAGWTISALELRSLDQETLEQHYGEHKGKPFYEPLVAFMSSGPVVALVVEGERVIEGVRGLAGPTDPIAAAPGSIRGDFGTIVRENLIHASDSEESAERELKIFFPGVV
>NZ_CP029191.1|WP_150184100.1|2643519_2643885_-|DUF4233-domain-containing-protein
MRTLCASTLIGEFFVIGFAGLVAMKDDDLSMGTVWTVCGIAMVVSLLLCGMVTRPGGVQLGWALQVALIASGFVVPTMFFLGAVFAAIWWASVHFGRKIDEAKARFAAMAEGQPEAGGNAA

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Crispr_ID: NZ_CP029191_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_5

2986731-2986820

Orphan

Consensus_repeat	Method
GCCGGGTGCGGCCCGGCCCATCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_5

>merge|NZ_CP029191|5|2986731-2986820|CRISPRCasFinder
GCCGGGTGCGGCCCGGCCCATCGTGAGCGGCCGTCACGGTCTGGGGCGGGTGAGCTGCTTTCGTTGCCGGGTGCGGGCCGGCCCATCGTG

>NZ_CP029191|5|5|2986731-2986820|CRISPRCasFinder
GCCGGGTGCGGCCCGGCCCATCGTG	AGCGGCCGTCACGGTCTGGGGCGGGTGAGCTGCTTTCGTT
GCCGGGTGCGGGCCGGCCCATCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150184337.1\|2980916_2981531_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378968
NZ_CP029191.1\|WP_150188208.1\|2990907_2991405_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|238979
NZ_CP029191.1\|WP_150188207.1\|2984063_2985080_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176191
NZ_CP029191.1\|WP_150184346.1\|2995665_2996616_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|366378
NZ_CP029191.1\|WP_150184345.1\|2993746_2995669_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP029191.1\|WP_150184339.1\|2982610_2983840_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184334.1\|2977103_2978903_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223989
NZ_CP029191.1\|WP_055568198.1\|2979219_2979861_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NZ_CP029191.1\|WP_150184340.1\|2985228_2985795_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP029191.1\|WP_150184349.1\|3001146_3001761_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NZ_CP029191.1\|WP_150184335.1\|2979964_2980765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226011
NZ_CP029191.1\|WP_150184343.1\|2989269_2990691_+\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226906
NZ_CP029191.1\|WP_150184348.1\|2999025_3000195_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP029191.1\|WP_150168469.1\|2998582_2998882_-\|DUF3039-domain-containing-protein	unknown	unknown	gnl\|CDD\|378609
NZ_CP029191.1\|WP_150184341.1\|2985781_2986315_-\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP029191.1\|WP_150184338.1\|2981659_2982607_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379694
NZ_CP029191.1\|WP_150184336.1\|2980694_2980904_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184342.1\|2988016_2989099_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP029191.1\|WP_150184347.1\|2996839_2998465_-\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119333
NZ_CP029191.1\|WP_150184344.1\|2991443_2993750_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|132240

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150184337.1\|2980916_2981531_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	4.54276e-12
NZ_CP029191.1\|WP_150188208.1\|2990907_2991405_-\|phosphotransferase	gnl\|CDD\|238979	cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.	1.20308e-07
NZ_CP029191.1\|WP_150188207.1\|2984063_2985080_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.69468e-117
NZ_CP029191.1\|WP_150184346.1\|2995665_2996616_-\|dehydrogenase	gnl\|CDD\|366378	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase.	2.25028e-45
NZ_CP029191.1\|WP_150184349.1\|3001146_3001761_-\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	3.40478e-69
NZ_CP029191.1\|WP_150184334.1\|2977103_2978903_+\|AAA-family-ATPase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.42485e-60
NZ_CP029191.1\|WP_055568198.1\|2979219_2979861_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.452e-30
NZ_CP029191.1\|WP_150184340.1\|2985228_2985795_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.91095e-06
NZ_CP029191.1\|WP_150184335.1\|2979964_2980765_+\|hypothetical-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	1.65556e-30
NZ_CP029191.1\|WP_150184343.1\|2989269_2990691_+\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	3.32458e-40
NZ_CP029191.1\|WP_150184348.1\|2999025_3000195_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.02002e-53
NZ_CP029191.1\|WP_150168469.1\|2998582_2998882_-\|DUF3039-domain-containing-protein	gnl\|CDD\|378609	pfam11238, DUF3039, Protein of unknown function (DUF3039). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.00031e-35
NZ_CP029191.1\|WP_150184341.1\|2985781_2986315_-\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.8939e-44
NZ_CP029191.1\|WP_150184338.1\|2981659_2982607_-\|hypothetical-protein	gnl\|CDD\|379694	pfam14803, Nudix_N_2, Nudix N-terminal. Ths domain occurs at the N-terminus of several Nudix (Nucleoside Diphosphate linked to X) hydrolases.	0.00968269
NZ_CP029191.1\|WP_150184344.1\|2991443_2993750_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|132240	TIGR03196, pucD, xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.	6.51685e-178
NZ_CP029191.1\|WP_150184342.1\|2988016_2989099_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	3.50821e-15
NZ_CP029191.1\|WP_150184347.1\|2996839_2998465_-\|family-20-glycosylhydrolase	gnl\|CDD\|119333	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NZ_CP029191.1\|WP_150184345.1\|2993746_2995669_-\|hypothetical-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	4.81927e-53

>NZ_CP029191.1|WP_150184341.1|2985781_2986315_-|DUF664-domain-containing-protein
MSRTDTPTLTGERADLLEALAHHRTMLRVTARDLTDEQAGLRTTASELCVGGIIKHVTSVERVWTAFIEDGLSALGDVTDMTDEDWAQRADEFRMLPGETLAGVLDAYERVAARTDEVVRGLPDLDVSHPLPEAPWWEQGGRWSARRTLLHVIGETAQHAGHADIIRESLDGALSMG
>NZ_CP029191.1|WP_150184340.1|2985228_2985795_+|TetR-family-transcriptional-regulator
MRADARKNRDHLLAVAGAAIAEQGVDVALRDIARRADVGLATLLRHFPTREALLDALLRTGFDELTEKACALETADAPGDALVSWLRDAVAWTTEYRGATVLMAAAIEEPESALHASCVALRAAGARLLERAQSAGVARGDLDGADLFALVAMLAWLGDQPSLAPRADHLFDVVAGAVLTGTSTVNPY
>NZ_CP029191.1|WP_150188207.1|2984063_2985080_-|zinc-binding-dehydrogenase
MKAIRLYEFGGPAVLRHEDVPVPEPAPGEVLVRVHAVGLNPPDWYAREGMPDVPPELKPPFHLPLTPGTDVSGVVAALGPDAGGTGAGPFSVGDEVIGLLRFPTALQAGAYAEYVTAPVADLARKPATLDHVHAAGLPMSGLTAWQYLIELGHDHPSPFQEARHRPIPLGTDTTVLVNGAAGGVGHLALQLAKWQGARVIAVASGTHEAFLRDLGADEFIDYTKERAEDVVRDVDLVLDAVGGPRSRRFLPTLKRGGSLFPVYFGDFDDAENAELGITVTLTQVRSSGAQLAELARLVDAGAVRVALDSTFPLAEARAAHERAARGHIQGKIVLTVAD
>NZ_CP029191.1|WP_150184339.1|2982610_2983840_-|hypothetical-protein
MALQRHMGNRAVVGMLQGSGHLGSGPVSVQRTGTDTDDGLTLGANTSGQSRAADPAFEVEAMAFERKLAAKASAHASAKGAMADMATKAKAYIRSGVGGAWDHADQRLAEIFDTVGQEGVEKSGFVGTAVADVMAVFDQGTLSEQYTHIVRFFTEVLARDLASSAKREEIDRRMKEAELNMPFLLDRRRAMLRAGGTPESVVTRDIAPVPPGSAVEHQGDARVRRDDVLKALNPETDPGETGRTEHTVAQTGLDFSDRQKAVHTKDDPSWDVQHDALKWLAGAKVWMINEKNTWVEAQRKLSLPLGGGPSGTTNTMMSAAKALRADKYGARLASIAFLVGASHHTLVEIMAAAEPFGCEYDPTQGIYRNIKPLTEDELRACGKDGRFPGESTPAGAGAGAGASAGRNGS
>NZ_CP029191.1|WP_150184338.1|2981659_2982607_-|hypothetical-protein
MTNFCNPYPELVGARLWLPTEPFEFGWASPVGCNALRCTACGEPVRSEVLPDGERRRYACGCHRRDTVWSYRIGSESDDLAPAFTDWVCGGHPDFELPAVLDGVELNEAVGWDALVAETALRPPFDPPGVELHARWITRLYRLLGAERTALSGAMAGLLNAEDPHLVRAAYDFFTNERQAAGAELVAGAVARRREWLAKTPDPRRAPATLLSGAALLLHERLLVVDDAGAPVDGPALTLTKELALAGIGPGDTPLTFRDYDPDWLWAHSGALAAANAEWVETLVYASSWAPAAAREKILAEMAEAAPAEVRAAIE
>NZ_CP029191.1|WP_150184337.1|2980916_2981531_-|helix-turn-helix-domain-containing-protein
MTEDAPSGPRPRNVHHLNPRSLRGLAHPLRMRLLTSLRHDGPATASQLAARLGESSGATSYHLRQLAEYGFVEDDPDRNKGRERWWRSAHQGTRTDEELIRDPNPEVQAALSTLLYEYATQRSQEVTTWIATRHEWSKAWDEAADTSDYTLTLSPAQATELSHRVNALVESYRDAAPPEGTPDVAQVRVHSHIFPTRPHPADGN
>NZ_CP029191.1|WP_150184336.1|2980694_2980904_-|hypothetical-protein
MDPYVHLKLHEERAARLRHAAPRRRVRRRHLRAQVGWSLVELGLRLVSSSGPSRPFPAPAARRPFPSAS
>NZ_CP029191.1|WP_150184335.1|2979964_2980765_+|hypothetical-protein
MFSRLTRPQALTLCALPVVALLAVAGLAPLPFAVAQPGGTADVLGKHDGKPVLTISGLPTRETRGELRMTTIVATGPQMDVYLGDVIDGWFRSDRAVMPKDSVYPVGDDVKEVEKHNLGDMKKSQDAATDAALNYLKANGVDDTDKVKVKADLGKIGGPSAGLFLSLGIIDKIDGDGSGGDLTGGRKIAGTGTITADGKVGPVGGVALKTQAAGRDGATVFLVPKDECSDAQAELPKGLRLVPITTLKGTVDALRALEKGGKVPSC
>NZ_CP029191.1|WP_055568198.1|2979219_2979861_+|helix-turn-helix-domain-containing-protein
MTAETSQTLDRGLRVLKLLADTDHGLTVTELSNKLGVNRTVVYRLLATLEQHALVRRDLGGRARVGLGVLRLGRQVHPLVREAALPALRSLAEDIGATAHLTLVDGSEALAVAVVEPTWTDYHVAYRTGFRHPLDRGAAGRAILAARQGLVTDPGYALTHGELEAGASGAAAPLVGVTGLEGSVGVVMLADSVPERVGPRVVDAAREVADALR
>NZ_CP029191.1|WP_150184334.1|2977103_2978903_+|AAA-family-ATPase
MTTTSAAANSSHHLSPAFPGRAPWGTANKLRAWQQAAMDRYIQEQPRDFLAVATPGAGKTTFALTLASWLLHHHVVQQVTVVAPTEHLKKQWAEAAARVGIKLDPEYSAGPLSKEYHGVAVTYAGVGVRPMLHRNRSEQRKTLVILDEIHHAGDSKSWGEACLEAFEPATRRLALTGTPFRSDTNPIPFVQYAEGTDGIRRSAADYTYGYGSALGDGVVRPVIFLSYSGNMRWRTKAGDEIAARLGEPMTKDAVSQAWRTALDPRGEWMPNVLKAADKRLTEVRKAIPDAGGLVIASDQDSARAYAKLIREITGTKATVVLSDDTGASKRIDDFSASTDRWMVAVRMVSEGVDVPRLAVGVYATTISTPLFFAQAVGRFVRSRRRGETASVFLPTVPDLLTFANEMEVERDHALDKPKKEGEEDPYAESEKEMDEANKEQDEDTGEQEQFSFEALESEAVFDRVLFDGAEFGMQAHPGSEEEQDYLGIPGLLEPDQVQMLLQKRQARQIAHSRKKPDEEADLLELPAERRPVVSHKELLGLRKQLNTMVGAYVHQSGKPHGVIHTELRRTCGGPPSAEATAGQLRQRIEKVQEWATRMK
>NZ_CP029191.1|WP_150184342.1|2988016_2989099_-|LuxR-family-transcriptional-regulator
MNRSRVAPALPGIERATDAVELFERASAGLRRLVPFDSAVWRATDPETGLITAPMLVQNLGAGEGCAAYWENELLEETVVPYRELARAAVPAAGLRDSTGDLPARSARYRRLLRGWGMHDELRAVLRIGDRPWGLVSLFRDAEPFRPDEIALVADRSRPLATLLRGFARPPAPAPRTDVPAPGLILFDGMGEAMSINEEARQHLASLPKGPSFPSPLGVRLPIWVIGTALQARAVADGRDHGDARVRIRTTEGRWLVCHASCLTGPGGHPGPVALVIEPPAPADLAVLIAESYGLTPRELEITQLVARGMTTAEIAATLFITPHTVRDRIKTLFAKVDVSSRGELVSRLFTEHYWPRGHA
>NZ_CP029191.1|WP_150184343.1|2989269_2990691_+|SidA/IucD/PvdA-family-monooxygenase
MDLAVVGGGAAAVALLDALADPTAAPRSAPGTIRVFEPSPHLWRGRPYGPDLDVVRVNVPPGISSIRHGDTGHYADWLGERAADHIDPLLGLPVVPRALYGEYLTHTAEKAVAALAEQGWDVEVVAERVTGADRRGSRLALRTADGQEYVATHVVLCVGTGSPPDPYGLTGTPGHIADPYPLAATLDRVPARSDVAVIGSGLTAVDVVVALASRGHEGRISLLSRTGVLPYVWQRPVARRPRHLTAEGVAELHAERGTVTLDALTDLLRAELADGHGDFEALGEELRTTTTTDPVRRLRQQLDAVADPRVGRRVLQSAAHAVGPYAWRLLPEADRARLRRHLRTAAAVASPMVPVNASVLMRLLDAGRLTIAPGDVRRTLRAEAPGTVINAVNPPPQSIPAGARDLVASLADTGLGTLHPAGGLLPADPRVHVVGDLAAGGSFIAASIPGVAAQASRTAQALHAAQALRTPLS
>NZ_CP029191.1|WP_150188208.1|2990907_2991405_-|phosphotransferase
MAAGKSTVAQALAGRLSRAAHVRGDAFRRMVVSGGVPYEGVPGGEGEAQLRLRYRLSASAADAYADAGFTAVVQDVILGEELKAYVELVRTRPTYVVVLAPRPEAVAAREDARGKTGYGAWTVEDLDAILRQQTPRLGLWLDSSELTVDETVDAILAGLDEARVR
>NZ_CP029191.1|WP_150184344.1|2991443_2993750_-|molybdopterin-dependent-oxidoreductase
MTTEATTATTPAPADHRADGQPPRGIGASLPSAESRVKTEGTFPYAADLWAEGLLWAAVLRSPHAHARIVSIDTSHALEMPGVRAVVTHEDVPGEPLHGRRTPDRPVFASDVVRHHGEPIAAVAADHPDTARMAAAAVIVEYEVLEPVTDPEKAFEAEPLHPDGNLIRHIPLRHGDPEAAGELVVEGLYRIGRQDPAPIGAEAGLAVPRPDGGVELYIASTDPHADRDRAAACFGIAPDRVKVVVTGVPGATADREDAGFQLPLGLLALRTGCPVKLTATREESFLSHAHRHPTLLRYRHHADAEGRLVKVEAQILLDAGAYADTSSEALAAAVSFACGPYVVPNAFIEGWAVRTNNPPSGHVRGEGALQVCAAYEAQMDKIAKKLGVDPAELRLRNAMATGDILPTGQTVTCPAPVAELLAAVRDAPLPELPKDTPEDEWLLPGGPEGAGDPSAVRRGVGYGLGMVQLLGAEGTDEVSTATVKVHDGGATVICAAVETGQGFSTLARQIVQETLGIEDVRVAPVDTDQPPAGPSCRGRHTWVSGGAVERAAKMVRTQLLQPLAHKFGMSTELLQITDGKITSYDGVLSTTVTEALEGKELWATAQCRPHPTEPLDESGQGDAFVGMAFCAIRAVVDVDIEIGAVRVVELAVAQDVGRILNPAQLKARIEAGVTQGVGAALTENLRTPRGLVRHPDLTGYALPTALDTPDIRIVKLVEERDVVAPFGAKAASAVPVVTSPAAIASAVRAATGRPVNRLPIRPQAAVAT
>NZ_CP029191.1|WP_150184345.1|2993746_2995669_-|hypothetical-protein
MSDDRHEGHGENTAGGGWQPHPQGEYDSDATAFVQLPEGMLDVPLAAPGHGYVPPQITVNPTAADATDPAATGAWVMPPEVTGAVRWPDAGTVQEQPPVHADPSVHADPSVHADPSVHADPHAHADPHAHGYDPRATGQWSFPEAESPAGQQPAHEQEYRPAYEQEYAHRYGQEPAAPPADVTGQWSIPVANGDLPDESGEFTASSLAAQWGGGTPPATLPGGAPAPWATGAGAGAPWGAQAQEVLHEPAPERVAEPVVEPVVEPEPQAQPGPGPEGMTEAAAEPESRFEKTQLLRAIKLPSAEPQAAEPPAAEPEPEPRPEPEQELAPAPEQEPAPEPVEEPADEVAEVVEAAAAPIEVAPQPVAEPAPVPEPAPAPEAAPEEAESTDTPDADEAVATDEAVVTDGAVATDETVVTDEAVATDEPPAPDVTPLHDDHPLVSYVLRVNGTDRPVTGAWIGESLLYVLRERLGLAGAKDGCSQGECGACNVQVDGRLVASCLVPAATTAGSEVRTVEGLAADGQPSDVQRALAACGAVQCGFCVPGMAMTVHDLLEGNPAPTDLEARRALCGNLCRCSGYRGVLDAVREVVAEREASAQNEHEQGQREQPGHDHGHAEAHIPHQAGPYGQDGPYGQDGGHA
>NZ_CP029191.1|WP_150184346.1|2995665_2996616_-|dehydrogenase
MYVEHAAGHREGAAGLTTHAPQAAQTPQSVKLPATLDEAVAALAAMPAAVPVAGGTDLMSSVNSGQLRPAALVGLGRISEIRGWQYQDGHALLGAGLTHARMGRPDFAALIPALAAAARAAGPPQIRNAGTLGGNIASAAPTGDALPVLAALEAVLIIAGPGGVRREIPVSHLLAGMDMLRPGELIGFVRVPLLHAPQVFLKATGRTGPGRATASVALVLDPARRGVRCAVGAIAPMPLRPLEAEEWVASLIDWDGERGSLVPEAVTAFGEYVATACIPDLPPAADGTEQPLAPAVLHLRRTVAALARRALGRALS
>NZ_CP029191.1|WP_150184347.1|2996839_2998465_-|family-20-glycosylhydrolase
MTFEQLVPAPTSAHWVPPTQGSFPLDDETALHAGPGTEGTARWLRSTVGAATGLRFPDGENDNGIVLRIDEGLAAEAYRLVVDGHAIRIEGGSAAGVFWGAQTFRQLLGPDAFRRAPLDPAREWTVPMVAVEDAPRFGWRGMMLDVSRYFMPKDGVLRYLDLLAAHKLNVFHFHITDDQGWRVEIKRHPKLTEVGAWRSRTRWGHRASPLWTEHPHGGYYTQDDIREIVAYADSLHITVVPEIDIPGHSQAAIAAYPHLGNSDVVDTEAMTVWDSWGVSPNVLAPTEEVLRFYEGVFEEILDLFPSTFVHVGGDECPKDQWKASPTAQARIKELGVGDEDGLQSWFIRHFDRWLADRGRRLIGWDEILEGGLAEGATVSSWRGYRGGIDAAKAGHDVVMCPEQQVYLNFREDGGPDEPMPIAYVRTLEDVYRFEPVPAELTEEEAAHVIGTQANVWTEVMEHQGRVDYQVFPRLAAFSEVAWRELPAPAERDFADFERRMVGHYARLDALGVDYRPPSGPLPRHLRPGVLGRPIEGAPPNV
>NZ_CP029191.1|WP_150168469.1|2998582_2998882_-|DUF3039-domain-containing-protein
MSTLEPEPERGAGTGTLVEPTPQVSHGDGDHERYAHYVQKDKIMASALDGTPVVALCGKVWVPGRDPKKYPVCPMCKEIYESMGAGGDNDKGGKDGGKK
>NZ_CP029191.1|WP_150184348.1|2999025_3000195_-|MFS-transporter
MRKVWLLMVGSFTLGLDAYVMAGLLPVVADDLGTTVSLAGQMVTVFTLAYAVSAPLVAGLLSGVRPRVLILAALAVFTLGNGLTALAPGLAVLLVARAVAGVGAGVYSALSTAAAAALAGEERRGRVLALVMGGMSSGTVLGVPLGVLLADHTSWRATMWLVTGLGAVALTGLAVGLPDIPAAPAVPVRARLAALADRKVLPIVGVSFLGAVASLGLYTYLAPVLASSGGVGDGAVAPYLWAWGIGGVLGSVVAGPLVDRTGRVFALVTGIVLALVVAIGVLPLLGAAAYPALVVWGAAGWAFQVPQQHRLLALRAERGAVALALNNSALYLGSAVGSGVAGLALAAGLAPRALPWAAAAVALAGLVLHLSAARGGGRGGSVRLRAGGG
>NZ_CP029191.1|WP_150184349.1|3001146_3001761_-|YqgE/AlgH-family-protein
MCTMTEVSSLTGRLLVATPALADPNFDRAVVLLLDHDEKGSLGVVLNRPTPVDVADILEGWGQLAGAPGVVFQGGPVSLDSALGVAVIPGEEGAASAGPRKRAPALRDPVGFRRVHGAIGLVDLEAPPELLASALGSLRIFAGYSGWGPGQLESELEDGAWYVVESEPGDVSSPDPERLWRAVLRRQRSELAMVATYPDDASLN

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Crispr_ID: NZ_CP029191_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_6

3221095-3221184

Orphan

Consensus_repeat	Method
CAGGGGCGCGGGGAACTGCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_6

>merge|NZ_CP029191|6|3221095-3221184|CRISPRCasFinder
CAGGGGCGCGGGGAACTGCGCGAACAGCCCCCACCCACCCGCAGGAAAAGGCGAAGCGGCACCACCCCAGGGGCGCGGGGAACTGCGCGA

>NZ_CP029191|6|6|3221095-3221184|CRISPRCasFinder
CAGGGGCGCGGGGAACTGCGCGA	ACAGCCCCCACCCACCCGCAGGAAAAGGCGAAGCGGCACCACCC
CAGGGGCGCGGGGAACTGCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150184472.1\|3212993_3213827_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP029191.1\|WP_055567693.1\|3212530_3212905_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184473.1\|3213823_3215401_-\|aromatic-amino-acid-lyase	unknown	unknown	gnl\|CDD\|176460
NZ_CP029191.1\|WP_150184486.1\|3230455_3230893_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP029191.1\|WP_150184480.1\|3221469_3222861_-\|cystathionine-beta-synthase	unknown	unknown	gnl\|CDD\|273464
NZ_CP029191.1\|WP_150188233.1\|3223016_3224045_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238874
NZ_CP029191.1\|WP_150184484.1\|3228791_3229487_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184478.1\|3219069_3220497_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP029191.1\|WP_150184475.1\|3216772_3217420_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224095
NZ_CP029191.1\|WP_150168749.1\|3212017_3212455_+\|diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|224929
NZ_CP029191.1\|WP_150184477.1\|3218106_3219042_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270324
NZ_CP029191.1\|WP_150184474.1\|3215549_3216776_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP029191.1\|WP_150184482.1\|3226552_3227809_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235175
NZ_CP029191.1\|WP_150184479.1\|3220508_3220928_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184483.1\|3228285_3228762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184481.1\|3226248_3226551_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150188234.1\|3224496_3225135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184485.1\|3229541_3230432_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184476.1\|3217421_3218093_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224095
NZ_CP029191.1\|WP_150188235.1\|3225470_3226178_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150184472.1\|3212993_3213827_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	4.63748e-31
NZ_CP029191.1\|WP_150184473.1\|3213823_3215401_-\|aromatic-amino-acid-lyase	gnl\|CDD\|176460	cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.	1.98999e-130
NZ_CP029191.1\|WP_150184486.1\|3230455_3230893_-\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	2.68959e-14
NZ_CP029191.1\|WP_150184480.1\|3221469_3222861_-\|cystathionine-beta-synthase	gnl\|CDD\|273464	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. [Amino acid biosynthesis, Serine family].	0
NZ_CP029191.1\|WP_150188233.1\|3223016_3224045_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238874	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.17251e-49
NZ_CP029191.1\|WP_150184477.1\|3218106_3219042_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270324	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold. This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.6757e-122
NZ_CP029191.1\|WP_150184475.1\|3216772_3217420_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.85288e-54
NZ_CP029191.1\|WP_150168749.1\|3212017_3212455_+\|diacylglyceryl-transferase	gnl\|CDD\|224929	COG2018, COG2018, Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only].	2.22968e-18
NZ_CP029191.1\|WP_150184478.1\|3219069_3220497_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	5.22255e-96
NZ_CP029191.1\|WP_150184474.1\|3215549_3216776_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	1.30528e-141
NZ_CP029191.1\|WP_150184482.1\|3226552_3227809_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235175	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50.	0.00199279
NZ_CP029191.1\|WP_150184476.1\|3217421_3218093_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	7.15505e-53

>NZ_CP029191.1|WP_150184479.1|3220508_3220928_+|hypothetical-protein
MEARDAELKKELDATLHARRELGEEYDSALVDSFLGKIEQRLDGTIDRRMRRHLAEQQMVVARGARSPASGVDSWGERFGFGVVSLILAVPLSAIAVVNADLTGLFVAWAGIVGVNAVHAFRGLSFGRRREERKSEWDD
>NZ_CP029191.1|WP_150184478.1|3219069_3220497_+|cytosine-permease
MAAEDLVERRSIDVVPDDERHGTAFSQFTLWLGANLQITAVVTGALAVVFGGDVVWSLVGLVLGNLLGGAVMALHSAQGPKLGLPQMIQSRAQFGVKGAVVPLLLVILMYVGFFASGSVLAGQATAELTHTNDTTGIVVFAAVTAVMAAVGYRVIHALGRVASVICALAFVYLGIRLVDRVDIGALFSDAHFDLPMFLLAVSLSASWQLAFGPYVADYSRYLPRTTSAKATFWWTLSGSALGSQWSMTFGVLVAASAGDAFLANQVGYVVGLGGTGLIASFLYFVIALGKLTINVLNTYGGFMSMVTSISGFRGQKVLGARGRAAYIAVIMVAGTAVALLGKDSFLSSFKDFLLFLLTFFTPWSAINLVDYYLISRERYDIPALVDPHGRYGAWRWDALTVYGTGLLAQLPFLVTHFYTGPLVDPLGGADISWIVGLVVPAVLYWALARRNPPVPGAGPRAERGVSPSAESAPAP
>NZ_CP029191.1|WP_150184477.1|3218106_3219042_+|ABC-transporter-substrate-binding-protein
MNRRTLLGGLLATASVPALAACSGGITSLDGGGSGGGGGGSSKDGVTIGTANFTENQVLGYLYAAALEAAGVKTNVRPNLGTREILIPALKGGDIDLLPEYQGALLHYLDPEAKATEEGEMQNALAMRLPRGLQILPYGRAEDSDAFVVTRETAKEYGLTSLADLAKHNGKLVIGASAEVKKRTVGVVGLKDVYGVEFKEFKSLDSSGPLVKGALRKGDVDVANLFTTDTDIAAEHWVVLTDPRNLVPGQHVVPLIADRKADSTVRKALARLGALLTTAQLTELNRLVDKDKKDPEDVAQDWADRHGITKK
>NZ_CP029191.1|WP_150184476.1|3217421_3218093_+|ABC-transporter-permease-subunit
MYELFKDLGAWLVSGDQWTGPDGIGHRLVEHLQYSLLATLVAAAIALPVGLLIGHTGRGAFIAINLSSFGRALPTVGLVVLVFLASGLSMWPVYIALVALAVPSIVTNTYAGMTAVDPEVRDAARGQGMRAHQVLFQVELPLALPLIMTGLRLALIQVVATATIAAYVSFGGLGRYVFDGLAQRDLVQVLGGAVLVAAVAVVLDLALAALQRALFRHRPSAQA
>NZ_CP029191.1|WP_150184475.1|3216772_3217420_+|ABC-transporter-permease-subunit
MTVDWSWIRDHTDDLTTLTLSHLQAALTAVALGLLISLPLAVVAHRVRPLRGLLLGLSNVLFTIPSIAVFVLLLPVSGLTRTTTVIGLTIYTLVVLLRNTVEGLDSVPAKTKEAAKAMGTRPLRTLLTVELPLALPVIMAGVRIATVMSISLVSVATYIGDGGLGQLFTDGFQRNFPTPVIVGVVLTLLLALVADALLVTLQYVLTPWTRRRRSA
>NZ_CP029191.1|WP_150184474.1|3215549_3216776_+|ATP-binding-cassette-domain-containing-protein
MIQFDTVHKRFPNGTTAVHDLTLDMPEGGVTVLVGSSGCGKTTTLRMINRMVDPTSGTIRVGGRDILEQDAAKLRRSIGYVIQQAGLFPHRTVLDNIATVPLLLGWGRRKARARAAELLETVGLAPDAGRRYPHQLSGGQQQRVGVARALAADPPVLLMDEPFGAVDPVVRTQLQDELLRLQRDLNKTIVFVTHDIDEAVRLGDRIAVFRTGGHLVQCAEPAELLARPADDFVADFLGAERGLKLLSLSTLSGVPQGPAPEGGAWTLRWDATGSPLSWRHKDGESADVPVRPLRDTDSLLAALDESLSAPTGLVARVDAEGVLTGVTSRTDIHEVAAAAHERGRHASIRGPVGADRAVPRAPKSSTPTPPNEPPQPEAPGEVDESGARGTARQATSDPQPQDHAEPTT
>NZ_CP029191.1|WP_150184473.1|3213823_3215401_-|aromatic-amino-acid-lyase
MKSSRIADTAANDRKAVVVLDGRGMMVADVVRLAESGARPVPATDGMKRAEESWNAAREIAAWGRVYGRSTGVGANRNEDVPTEAAADHGLRLLRSHAGAIGAELPARQVRAMLAVRANQLLAGGAGLRPSVVTALCEALETGAYPTVNEFGSVGTGDIAALSQMGLALAGEHPWRGAGRPPQPQPLDNNDALALISSNALTLGQSALALHELRGLIGATQVVAALSLMAVDGSYEAYALPVHEARRHPGSYAVAERMRRLLGAPDRPTPPLGRIQDPYGFRCVPQIHGPAHDAADALEDVLTVEINAAAENPLISPEDLAAYHHGGFYLAQLALALDHFRLAVTQAARLSTSRLSTLNEPAFTRLRPFLADGEPASSGVMILEYAAGAALGDLRAFSAPASLGHAVLSRGVEEQASFASLAARQTLRACEAFRMVVGCELVAAVRALRQRDMRLDPDTPLARAFELADSVLEAEFADRPLTDDVTAAAGLLDRFTTVWSELGAATNAGTTAGTTAGTDIMRGTA
>NZ_CP029191.1|WP_150184472.1|3212993_3213827_-|MurR/RpiR-family-transcriptional-regulator
MSDSPAARLQVLFEGHRLTPTQRRIAHCMVRRAADAPFLSSVELAELAGVSQPSVTRFAVALGFDGYPALRRHLRDVAPAEESGATAANEYQQAVDAEIENLRHLAEVLADPEPVERAGRLLAASRPLPVLGLRAAASQAYGFSYFAAKVHPEVRLLDEGGTMLADRIDAAARAGASALLCFALPRHPREVVDALAYAQSAGLTVVTVADSAFAPVAAHSDLLLPAAVGTGLAFDTACAPMLLGRVLLEAMCDNLPDAQARLEEFDVRAVARGLFVE
>NZ_CP029191.1|WP_055567693.1|3212530_3212905_+|hypothetical-protein
MTDTETALKEATTTIEGVIGAALVDYTSGMALGTIGGGKDLDLSVAAAGNTDVVRAKLRTMEMLGLKDEIEDILISLGSQYHLIRLMKGRNNNGLFLYLALDKDRANLAMARHQLKRIETGLDV
>NZ_CP029191.1|WP_150168749.1|3212017_3212455_+|diacylglyceryl-transferase
MKFFASWRRAGRRELVAAEADVLGELKRLRTRIPQLRGALTASVDGLLLAQDASDVEAEGVCALTAAALGVALRLSDATHQGGFRELIIRGEQGYVATYAAGSSAVLTLLAEPRINVGRLHLEARRSSALIGELVDAAVDRAEET
>NZ_CP029191.1|WP_150184480.1|3221469_3222861_-|cystathionine-beta-synthase
MQFHDSMISLVGNTPLVRLNNVTAGIQATVLAKVEYFNPGGSVKDRIALRMIEAAEQSGELKPGGTIVEPTSGNTGVGLAIVAQQKGYKCIFVCPDKVSLDKINVLRAYGADVVVCPTAVDPEHPDSYYNVSDRLVRETPGAWKPDQYSNPNNPLSHYHSTGPELWEQTEGKITHFVAGIGTGGTISGTGGYLKEISKGGVTVVGADPEGSVYSGGSGRPYLVEGVGEDFWPTAYDRNVTDEIIAVSDKDSFQMTRRLAKEEGLLVGGSCGMAVVAALRVAERLGPDDVVVVLLPDSGRGYMSKIFSDEWMNDYGFLEEAGDQPRVGDVLSRKEGGELPSLVHMHPEETVGEAIEVLREYGVSQMPIVKPGAGHPDVMAAEVIGSVVERELLDALFAQRASLSDPLEKHMSDPLPQVGSGEPVADLMSVLGGADAAIVLVEGKPTGVVSRQDLLAFLAEQQSQ
>NZ_CP029191.1|WP_150188233.1|3223016_3224045_+|SGNH/GDSL-hydrolase-family-protein
MQGMSRARVARRIAAGAAYGGGGIGLLGAATVGVVLAEVQLAKRTVGNGHVDPPRADGRYGGAFAAEAARPTHAEPVRFAMLGDSTAAGQGVHRARQTPAALLASGLAAVAERPVDLRNVALPGAQSDDLDRQVTLILSDPHWVPDVCVIMIGANDVTHRMPPTRSVRHLSSAVRRLRTAGAEVVVGTCPDLGTVENVYQPLRWLARRVSRQLAAAQTIGVVEQGGRTVSLGDLLGPEFAAHPRELFGPDRYHPSAEGYATAAMAVLPTLCAALGLWPEEDRPDVSRREGFLPVARAAAQAASEGGTEVTAAMPTGPRGPWALLKRRRRRRIHTPTPSPLPH
>NZ_CP029191.1|WP_150188234.1|3224496_3225135_+|hypothetical-protein
MTAAAVLSLSACGGSDGDSKDNEKIAGADSNPGSQKEKSPSPKASAADGVDRPEIKLPKDVKNVFEGGKTGDPKKDAVLADNERWLDALIEATVVVDAKDHPALKFYGSGDALLSAADYIQGFRKKDKSFIGTIRYYDRQVTFLKDGVAAVSYCKDGTKTYPKDLKTGKVDRSIPESAADYGFYNTRVKKDANGVWQTESVTYVEEATKKCM
>NZ_CP029191.1|WP_150188235.1|3225470_3226178_+|hypothetical-protein
MGDLVGGIFDSYFKEGHPYKNYNLDKQGEGQFWATAVDEKRKDEPEAQACDRLPFWVPKGEPPKEPLAVSPRILAEYAYGQIPVPDTKIEMAPEGETKVNLPTWVWLDKAKFKKISVTATLPGTGLSATTTAEPVSLRLDPGTPDAETYPSSGECPIGNDDRIGRPRAKGTPADTDPPCGVRYLRSSADAPYELGATLTWRVTWKSTTEPGGELPPGEFGTTQDVVVREIQSVNR
>NZ_CP029191.1|WP_150184481.1|3226248_3226551_+|hypothetical-protein
MSDLRLDGTVFEDLKKTFSSVSDRMDAARRALKNTDGSVVGAEKLIEDVHEFADEWGYGVKQLGKHTEGAVKMINKIDEEFSKLDQALAESLKSARKKSK
>NZ_CP029191.1|WP_150184482.1|3226552_3227809_+|enoyl-CoA-hydratase/isomerase-family-protein
MSSTKRPALPNIGWDPTPGNVEDTRDLAKKLGGLAGELGNAVRDLERIECGAWKGKAALAFTEYIGEDVTPLIRKSHESFDKASRALHRWAKELKEFQDETDRLEKKAGEKLDARSEAKPDSKESAKTSGDVDEVIGQVHDLEDRFAKAAGAISKELDKASDIAPDEPGFWDKLTKGVKDAWDATGKWLKDHADLIKLIGDLLSDLTAVLALLAIVTLPFPPLAAVFGTAALLTSGLALAAHGVAKAAGADVSWMQVGLVAVGLLPGIGMLGKATKVAGRTRGVTLAAKLGEGFKATSVGNGRILLAFGEHSADLTKGFGIGGLVKLGGKSTDVYEVAHAGGGLLNRMGGLAAGGYHEGQWLGSRALNLIPGVHINPAGAGIAMDAGAKIFPKITSIHQHVGEALFPGDQFEKSASGG
>NZ_CP029191.1|WP_150184483.1|3228285_3228762_+|hypothetical-protein
MTDHRLVIVGFPYDKKDESRIEDEVLWQAPRSAIDTVERRDFKSGNDLRIVFTDGSWCRLRSLSRRSLTWPLIEPREYIPLESLTPPQRAAVEAFAAARHPDVEPPLVTRNACGCYRVLVMDQLTVDADFGTTEWEMTMDADGAEVEPVAYHPEDFAD
>NZ_CP029191.1|WP_150184484.1|3228791_3229487_+|hypothetical-protein
MTSPTISHDPPPLWFLVPEGFFALPVAATPAERAEHSKSFVRQLYSRGDDSIWEPAAPYYAAMAELMADSGVSYSAMGLFSTADEGENGGTARHEPADGVAQCALTVAAVPTDQVDVDTDVVAQGILAALSSDPYNDARWLDLPCGPSVSSITLKKYTLTPEVTADGEPTDLLTGQIQVHVPFPTGPFTAIFTLHTASTDYWTEFCNIMSAILQTVSFTEPDGSENEDVSR
>NZ_CP029191.1|WP_150184485.1|3229541_3230432_+|hypothetical-protein
MDWYPNSDEQLLLRTSVRFATGLAPAVSGSRWFRDLERRDVQDELPGWPPGPTYQLRSAGDKAARRTGRALLVGIPLVANLIANLGGAAGTPLGDVPGRGKPDEPENEVHDFPVMWAAPGSLARTVPWQLDPGRRPEDCVTDLVLTDRRLLFLATRKGSLEKAETLGEFARDTIAEVRRMKFSEINADVRVTFTDGSWVRLSVGNPDNAERLEQVLGGTVRMLAESELSEGQLDRVARFKADLPKTAHPPTYSRLRSGVTLVESRIPVKAGSGLFETHSILMDDSGQPAEPAPGDL
>NZ_CP029191.1|WP_150184486.1|3230455_3230893_-|ATP-binding-protein
MRNATVSPPWAYTLQLPHDPCAPGVGRATLRAVLETYGLGDLTPTAELLAGELLNNAHCHTDGPYALRLRSSSPEGIRVAVWDSNPQIPPGFGKAAGGADSGPPETAENGRGLHIVRACADRWGSYAMGTGDAGKLLWAEVTPSS

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Crispr_ID: NZ_CP029191_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_7

3593444-3593567

Orphan

Consensus_repeat	Method
CCGTGGTGGTCGCTCGCGCAGTTCCCCGCGCCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_7

>merge|NZ_CP029191|7|3593444-3593567|CRISPRCasFinder
CCGTGGTGGTCGCTCGCGCAGTTCCCCGCGCCCCTGCCCCCGAAAACCCCCCGCGCCGCGGCAGGACAGCCCGCCTTCCCGGTGCGGGCCCGTCGTGGTCGCTCGCGCAGTTCCCCGCGCCCCT

>NZ_CP029191|7|7|3593444-3593567|CRISPRCasFinder
CCGTGGTGGTCGCTCGCGCAGTTCCCCGCGCCCCT	GCCCCCGAAAACCCCCCGCGCCGCGGCAGGACAGCCCGCCTTCCCGGTGCGGGC
CCGTCGTGGTCGCTCGCGCAGTTCCCCGCGCCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150184749.1\|3589846_3590602_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NZ_CP029191.1\|WP_150184756.1\|3601582_3602227_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226789
NZ_CP029191.1\|WP_150184750.1\|3590688_3593409_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP029191.1\|WP_150184752.1\|3596582_3597281_-\|copper-homeostasis-protein-CutC	unknown	unknown	gnl\|CDD\|225684
NZ_CP029191.1\|WP_150184744.1\|3583558_3584380_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP029191.1\|WP_150184747.1\|3586688_3586877_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184754.1\|3599827_3600775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184758.1\|3603862_3608593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334197
NZ_CP029191.1\|WP_150184745.1\|3584416_3585397_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP029191.1\|WP_150188269.1\|3587052_3588144_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|172015
NZ_CP029191.1\|WP_150188270.1\|3593885_3595883_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP029191.1\|WP_150184753.1\|3597372_3599655_-\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP029191.1\|WP_150188271.1\|3602262_3603411_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP029191.1\|WP_150184748.1\|3588071_3589715_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP029191.1\|WP_150184743.1\|3582491_3583562_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP029191.1\|WP_150184755.1\|3600814_3601492_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|274422
NZ_CP029191.1\|WP_150184746.1\|3585409_3586489_-\|DUF2157-domain-containing-protein	unknown	unknown	gnl\|CDD\|375428
NZ_CP029191.1\|WP_150184757.1\|3603471_3603852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184751.1\|3595922_3596495_-\|DUF2165-family-protein	unknown	unknown	gnl\|CDD\|370754
NZ_CP029191.1\|WP_150184742.1\|3581460_3582495_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150184749.1\|3589846_3590602_+\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	8.87748e-18
NZ_CP029191.1\|WP_150184756.1\|3601582_3602227_+\|hypothetical-protein	gnl\|CDD\|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.21768e-43
NZ_CP029191.1\|WP_150184750.1\|3590688_3593409_+\|DNA-binding-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.17043e-42
NZ_CP029191.1\|WP_150184752.1\|3596582_3597281_-\|copper-homeostasis-protein-CutC	gnl\|CDD\|225684	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism].	1.47709e-26
NZ_CP029191.1\|WP_150184744.1\|3583558_3584380_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.4223e-137
NZ_CP029191.1\|WP_150188271.1\|3602262_3603411_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.63445e-15
NZ_CP029191.1\|WP_150184758.1\|3603862_3608593_+\|hypothetical-protein	gnl\|CDD\|334197	pfam00656, Peptidase_C14, Caspase domain.	6.28972e-12
NZ_CP029191.1\|WP_150184745.1\|3584416_3585397_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	9.87372e-73
NZ_CP029191.1\|WP_150188269.1\|3587052_3588144_+\|DUF2029-domain-containing-protein	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	4.39307e-54
NZ_CP029191.1\|WP_150188270.1\|3593885_3595883_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.09207e-66
NZ_CP029191.1\|WP_150184753.1\|3597372_3599655_-\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP029191.1\|WP_150184748.1\|3588071_3589715_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	8.70116e-109
NZ_CP029191.1\|WP_150184743.1\|3582491_3583562_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.09206e-70
NZ_CP029191.1\|WP_150184755.1\|3600814_3601492_-\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|274422	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.	8.29302e-20
NZ_CP029191.1\|WP_150184746.1\|3585409_3586489_-\|DUF2157-domain-containing-protein	gnl\|CDD\|375428	pfam17917, RT_RNaseH, RNase H-like domain found in reverse transcriptase. DNA polymerase and ribonuclease H (RNase H) activities allow reverse transcriptases to convert the single-stranded retroviral RNA genome into double-stranded DNA, which is integrated into the host chromosome during infection. This entry represents the RNase H like domain.	4.07893e-05
NZ_CP029191.1\|WP_150184751.1\|3595922_3596495_-\|DUF2165-family-protein	gnl\|CDD\|370754	pfam09933, DUF2165, Predicted small integral membrane protein (DUF2165). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.28261e-61
NZ_CP029191.1\|WP_150184742.1\|3581460_3582495_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.47274e-82

>NZ_CP029191.1|WP_150184750.1|3590688_3593409_+|DNA-binding-protein
MSPDEPQTTDSADASVTARVTAPPRAADVPRSLAEALRSRGDDALADLLRARPDLLNPVPNDLTQLATRAGTRASVVRALERLDRFAQQVAEALAVASEPASYDEVRRLLAGDDGDAAVEAALPRALATLHEQALVWGPDDRLRLVRTARELLAPTPQHPSPTGLGPTVAEATAGMSPTRIQDIVTAAGLPTTHDPVSAVRSLTALFTDRTRMSALLDEAPAESVEVLSRLVWGPPYGQVTADPARHLRWLLDRGLLLPTAPGTVVLPREAALHLRAGRAHRTPEPVPPPVEAAREYRPQVVDAAAAGQAYTALATVEELLKDWDEGGPAVLRAGGLSVRDLKRTAVALDTSEPLAAFWVELAYAAGLLASDGEADERYAATPAYDTWQELPAAERWSALATAWLAATRTAGLVGGRDGKDRTLSALGPHLDRSTAPEVRHRVLALAAALPEGTAPTPDSLLSRLRWERPSASRGRPGQDGTPTPSDAPPPQDLRSRIAQWTLNEAELLGVTGRGALSSHGRALLSGFAAGSVTGAGSGAGAGAGSGFGAGSGAEAGSGARSGAGSGSGAGSVSGYGFGAGSLVADATAERDLAAAHAARLLAPLLPEPLDHVLLQADLTAVAPGPLERPLGDALAVLADVESKGGATVYRFTPGSVRRALDAGQSASDLHAFLAAHSRTPVPQPLAYLIDDVARKHGHLRIGAASAYVRCDDEALLNEILADKRAQSLRLRRLAPTVLAAQADPGTLLDGLRAMGFAPAAESAEGDVLITRAHAHRTPPRSAPEPVPDGPPLPGDTLIGAAVRAIRAGDLASTAPRKETPTSASPSDGRLPRTTAAETLATMQAAVLTGEALWIGYVNAEGTASQRVIAPVRVEGGFVTAYDHTADEVRTYPLHRVTGVAELADD
>NZ_CP029191.1|WP_150184749.1|3589846_3590602_+|metallophosphoesterase-family-protein
MLTRVAVLSDIHGVLPALEAVLAEPEVRAADRVVLTGDITAGPQPAEVLDLLAGLGDRAVLISGNADRELLEYRRGDRDTIPDPIGPWAADQLRADHLDLLARLPKSARLTLAGLGDVLFCHATPRDDEEIVLVDSRPERWAEVLDGVDPAVRTVVCGHTHMPFVRLAHGRTVVNPGSVGMPYGRAGAHWALLGPGIDLRTTPYDIDAAVTRLTRECAYPGIAEWADHYLQARDSDAEALAVFGPLDGRRG
>NZ_CP029191.1|WP_150184748.1|3588071_3589715_-|DEAD/DEAH-box-helicase
MNGPLIVQSDKTLLLEVDHEQAEACRRAIAPFAELERAPEHIHTYRVTPLGLWNARAAGHDAEQVVDALVEFSRYPVPHALLVDVAETMARYGRLTLSKHPTHGLVLTTTDRPVLEEILRSKKVQPLVGARLDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHKIDLDEAGWSLRPYQQQAVEGFWHGGSGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRPVTIATYQVLTTKRKGIYPHLELFDSRDWGLVIYDEVHLLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPADCVEVRVNLTDSERLAYATAEAEEKYRFCATTATKRKVTEALVKKHAGEQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFREGEISVLVVSKVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKADGHEARFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIVDADELLAGG
>NZ_CP029191.1|WP_150188269.1|3587052_3588144_+|DUF2029-domain-containing-protein
MADTLVYRAEGAAVANGSDLYGFTVTEWELPATYPPFAAILFVPTTWLPLGALKTVFLIGNVALLLLLVRLSCELAGLRVRAPVLCAATALALWLEPVFQTVLFGQINLALACLVLWDLTRPPGAVGKGFAVGVAAGIKLTPAVFVIYLLLRGRVREAAVACAGFVGTVLLGALVLPAASVDFWTRRVFETGRVGKAWIVDNQSLQGLIARLLHDAEPGAAWAVPAAVTAVVGLWLVRRAPDEPRALLLAACTALLVSPISWSHHWVWCVPLLAVLIARGRPRLAATVAALFTARTFWLLPHEGALDLHLPWWQQVLASPYALLALAVWPVLGRTDPCVPQPPASSSSASTMRYAYPCSARNR
>NZ_CP029191.1|WP_150184747.1|3586688_3586877_+|hypothetical-protein
MSATTFTPASAQSSADPGAVPHGAPHPRGIGGALRAAKVLVSAAFGVVVLGEFAEEAGVRPR
>NZ_CP029191.1|WP_150184746.1|3585409_3586489_-|DUF2157-domain-containing-protein
MGIESDQLVYDYLSRVGDLAQQRQLPSGDRMRLVADLRNRIDRGREGATGDSPASVRRILARLGTPEEVVEAAGGASGDVQSDVPGHTPGRAPEAAPGDAPAKPRALRVPKPRRTTKRTPEAPAAPEPPDASRIPDPRRPPDLFEGAAPPHLAGIDELGPSDAQPDWWRVDSSPFGHADSVPGFVGGIEIPELLKPPAKAGAKKAREAEEEAEEEEEGAEEAAYEEAVEEPGRRRWRLPRAAVGTGPTFSNPLLLLAAALLAVGAVLGNLVVLGVGWLIAYASRRLTRAEVKFAVIGLPTLAVAAGITWLWGRGDGRWGDPIRDGHMSDAIADTWPWVVRGAAVASALFLLWRSQRQRP
>NZ_CP029191.1|WP_150184745.1|3584416_3585397_+|ABC-transporter-substrate-binding-protein
MPRLRSPLRRRALRTGSLALTGALALAACGSSDSDGTAAGSGETHTVKTAMGDVNVPVDPRRVVVLDTAELDSAITLGVKPVGSTHVEASSGFPGYLPKDEVSGIKDVGEMMTPNMEAIAALKPDLILTSKIRHAAKYDQLKAIAPTVMTETTGYPWKENFQVHADALGRRAEAKKVVADYRAHTRKVTKAIGGPAKAEQTKVNVLRFIEGADIRLYGDRSYIATLLKDVGLGRAPISAKAKDGFSYDLSPEKIDLADTDVIFRSTYGDPKKSKETQTVGSGLWKNMRAVKSGNVHTVDDELWIQGIGYTAADRILAEMQADLTEK
>NZ_CP029191.1|WP_150184744.1|3583558_3584380_+|ATP-binding-cassette-domain-containing-protein
MTAARLTARELTLAYEDRTVVENLDLTVPDGKVTVIVGPNACGKSTTLRALGRLLKPRSGAVLLDGASLATLPTKKIAQQIGLLPQTPVAPEAITVADLVARGRQPHQRWWQQWSDADEKAVTEAMERTDVVPLAERPVDELSGGQRQRVWIAMALAQDTGLLLLDEPTTYLDISHQVEVLDLVRQLNHERGRTVVVVLHDLNQAARYADHLVAMKDGEVVAEGAPGKTVTEELVREVFGLECVVVPDPVTGSPLVVPGAPWTATAALPSHPA
>NZ_CP029191.1|WP_150184743.1|3582491_3583562_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSTVASARVRPAGYAVLRVRRAAFLVHRRATAVGAVLTVLLAAGCLAYLCVGESFVHPVEALKVVLGQPSPDELVVGTLREPRMVVGLLVGAAFGVAGALIQTVARNPLASPDIIGISHGASALTVGALTLGVTSYTVLPYLSVLGGITAAALVYVFAWRGGLHAARFVLIGIGFAVALRSVTTLFMTKGDYLVAQQAQIWMTGSLNGRGWAEANPLALTLLVLLPFVLWAARAQRAVGLDDDTTTALGTRLGHVRLGLVLLGVVLASVATGAAGPVDFVALLAPQTARRLTRTAQLPLLCSALLGALIVVLADLLARRLFSPTELPVGVLTAAVGAPCLIWLIVRSRTVRPGGTP
>NZ_CP029191.1|WP_150184742.1|3581460_3582495_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSVPGQPPAPVRLSVPVRRVTVLTAAVVALLLAILLSLAVGARAIAPSAVFDALLHGGHGDAAEVIREMRVPRTVTGVLVGASLALAGTVLQGITRNPIADPGILGISQGASVAVVLAIAYAGVHTLTGYVWWAFVGAGLASVAVHAIASGGRGGATPVKLALGGAAVNALLVSVTTGVLTTKASALDEFRFWQVGSLSGRDADIVGRIWPFLLVGLLLVLAVARGLDALALGEDVAKGIGQNVAAVRIVGGLGATVLTAAGVAAAGPLAFIGLAVPHIARALIGGDHRWVLPLAALIGPVMLLVSDTVGRIVFPPSEVPAGVMTALIGVPFLVTLVRRKAVAA
>NZ_CP029191.1|WP_150188270.1|3593885_3595883_+|AAA-family-ATPase
MREDAEALDIRDVTANWVNAAVLSRQLEERIKSLADLAHTPLFFGRLDYLHAPGAEQAEGAEGEQFYIGRRHVHDADGDPMVIDWRAPVSQPFYRASKKDPMDIALRRRFGYTGGDLTAYEDEHLSDPAEAERTSELLQREIERPRVGPMRDIVATIQPEQDEIVRSGLGGSVCVQGGPGTGKTAVGLHRVAYLLYAHRERLARTGTLVIGPNASFLHYIEQVLPALGELEVKQATVDDLVAHVEVRGTDDAAAALVKGDARMAEVLRNAVRSHVTLPTEPVVVVRGSRRWRIPSYELEEIVRELLARDIRYGAAREALPQRIAHAVLVRMEQAGEAPDDRVQDAVARNAAVKAAVKAVWPAVEPAKLVLRLLSDAEFLAAHAEGVLSAGEQKAILWTKPARSVKSAKWSAADAVLIDEAADLVARTHSLGHVVLDEAQDLSPMQYRAVGRRCTTGSATVLGDLAQGTTPWATRSWDEALAHLGKDGAVVEELTAGFRVPREVIAYASRLLPDIAPGLTAVDSVRESPGSLAVRRVTTTTDDALDAGRLDAECVDACVESLRQEGSVGLIAADARVPALADALTAAGITYLDPGQETTPDTRLTLVPASLAKGLEYDYVVLDEPSAVVAGEPDERTGLRRLYVALTRAVSGLIVVHADDLPEQLA
>NZ_CP029191.1|WP_150184751.1|3595922_3596495_-|DUF2165-family-protein
MPTPENTRPAERALAAGTLPVAATLLTGTIALYIALVAFGNITDFETNQQFVRHVLAMDTTFKDNGLKWRAVESTALQDAAYVAIIAWETLAALILGTATVLWARALRRPERLRRAQLTGSIGLLMILLLFGVGFIGIGGEWFAMWQSDAWNGLDAAIRMITFAGIVLIVTHLPAATGGREEAGDPKGRP
>NZ_CP029191.1|WP_150184752.1|3596582_3597281_-|copper-homeostasis-protein-CutC
MSKRAVLEVIALDAEDAVAAQAGGADRLELVTDMAADGLTPSRETFAGIRSAVDISLRVMLRLTDGFAAGDADDVDALLRRTRELRDEGAEEFVLGFLDEAGGADMPAVEALVDALDGCRWTFHRAIDRAADRDALRKQLADLPGLDTYLTAGSADGVDDGLPTLLAEAARRGEPGYEPQLLIGGGLRLDHLPKLRAAGVDAFHIGGAARPDGWSAPVCAAAVAQWRAALDG
>NZ_CP029191.1|WP_150184753.1|3597372_3599655_-|heavy-metal-translocating-P-type-ATPase
MATTTPGAAAVELAIGGMTCASCAARIEKKLNRMDGVEATVNYATEKAKVTYRGDDVSVRDLIATVEATGYTAQEPAPVRADAGPADGGDGDGDERAADDALRPLRQRLTTAVLLSVPVIAMAMAPALQFEYWQWLSLTLAAPVVTYAAWPFHKAAFTNARHGAATMDTLISVGTSAAFLWSLWALFFGTAGTPGMTHPFELTIARSDGAGNIYLEAAAGVTAFILAGRYFEARSKRKAGAALKALLQLGAKDVTVLREGGREETVPVGELKVGERFLVRPGEKIATDGRVVEGTSAVDAAMLTGESVPVEVGVDDAVTGATLNVGGRLVVEATRVGADTQLARMAKLVEDAQNGKAAAQRLADRISAVFVPVVIGLALATLGFWLGNGAGLTAAFTAAVAVLIIACPCALGLATPTALMVGTGRGAQLGILIKGPEVLESTRKVDTIVLDKTGTVTTGRMTLLATHTAPGTTASDVLRLAGALEHASEHPIAQAVAAGAAAEVGELPAPEDFANVAGLGVQGVVEGHAVLVGREQLLAEWEIRLPAELARAKSEAEAAGRTAIAVAWDGEARAVLEVADAVKDTSAEAIERLRALGLTPILLTGDNKAVAASVAAEVGIAPRDVIAEVMPQDKVDVVKRLQAEGRSVAMVGDGVNDAAALAQADLGLAMGTGTDAAIEAGDLTLVRGDLRAAADAIRLSRRTLGTIRSNLFWAFAYNVGALPLAAAGLLNPMIAGAAMAFSSVFVVGNSLRLRGFKPLS
>NZ_CP029191.1|WP_150184754.1|3599827_3600775_+|hypothetical-protein
MNTGLKITAFAAAVAATFGTAYGVGTGIDPVTDRDKTPTARHGEHESEQPEGEGGKAGHTPGGLQISDRGYTLELAETRLTADKKQPLRFTVVEDATGRNVTAYAKEHDKELHLIVASRDLTTYRHLHPTRAADGTWSTDVRLPEAGGYRVFADFRPKGAKEGLTLGADLGVAGAYEPRELPAHSTTTKVDGYDVTLKGELKTGAGGDLTLSVAKNGRPVTDLQPYLGAYGHLVALRSGDLAHLHVHPNGTPGDGKTEPGPGISFGTAAPSKGAYRLFLDFKHGGKVRTAAFTVYAGGAAEKGDGAAEEGGGHEH
>NZ_CP029191.1|WP_150184755.1|3600814_3601492_-|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTVNDEKTYDPERAGRLLRSERDALIPLLRAAPDEAYAIRTCCPGWTVRHVVAHCSSALTRVVEGRFEEGVFSPECNERDIAERADWSHSRVVDELEHAMTEAGPVLAAAKGYLDGVALGEWVHAGDVREAWGKPGAYGGDGLADALALLEQFSRSAHAASPLPLHADIDGRDEPLTLGVADGKRPPARYIGDAPTLIRLCAGRPLAGTRYELAGATEKELSLFG
>NZ_CP029191.1|WP_150184756.1|3601582_3602227_+|hypothetical-protein
MADDKDLHARWAATLLRASGGASGVDPAPYAERLLARWAEPQRRYHTTDHLAAVLDHIDVLEEHAENPELVRLAAWFHDAVYAPDRSENEERSARLAERALPEAGLTEERTAEVARLVRLTVTHDPAEGDSNGETLCDADLAILAAPSDTYAAYAAAVREEYAFVPDEAFRQGRAEVLRGLMALPRLFRTPYGTSNWESPARENLATELKLLSP
>NZ_CP029191.1|WP_150188271.1|3602262_3603411_+|GNAT-family-N-acetyltransferase
MGGDQIDEAVAHTAAVLRAAADRDWGAKAGGVDWSCLKTSEHIAGVLAAYACQLTGRATDGWVPFDTFLDEGTGPEGAIHAIEAAAGLLSAVVRTTPRGVRAYHSYPSGGADASGFAAMGVTELLLHTYDIAHALGVDAEPPVSLAEAVLSHLFPHVPPTPAGGTPWTTLLWATGRGDLPDRARVTQWRWHNPYALPAGELSLRELTPAAAADLAEGGTGGLTWLGGAPFGGTRAASGATFNKYVAGVHRPGWGVYALVRTADEVAVGGMGFHGPPDDEGCVEVGYDLVEPARGNGYATVALRALSAWALTHPEVTSLLALTTPENVASQKVATGAGYVRLPDRTPHRAYGLHRKAPSRVITTSSARSTGPAEGVTKSPSWN
>NZ_CP029191.1|WP_150184757.1|3603471_3603852_+|hypothetical-protein
MTTANDDATDRIEARIEGRSLAFWVEATDEDTDLEGPGADSKGLFSRDGDAVLRSVPLGPLRKNLAETVDALQQVFKEVADRDDTLAFAEAQLSFQVTASGSIQLIGTGQVQGTRGLTLTFKRPTA
>NZ_CP029191.1|WP_150184758.1|3603862_3608593_+|hypothetical-protein
MAHKALLIGASDYDEPLLDSLPFIQDDLARLRDVLTDRGFRSAEIVESKRGIIPSVVHAQARAFLRDARPDDTLWIVLSGHGFHFEGQDYLVPEDATYAVEPFSDACVEIDWRKELGESPASHVVFLIDACREGVQRDAKAGPPGMQSWTRRAIAASLRRKVAYVYGCSATQKALFVRESEVAAPGSDTGIAPGESFSLFTRAVGDAIEQNPHAMRLQEFFQEVQTRVTALHRAYKRPSRAPQQISVVSELPPGEQDFPLLPGPDRHTEAHPWIRSTAQHPVWQRTRPGPARDTLHELCGTLATGLAAAYEKAATALHADPWHDSELALRTHDRLGFLTHRLPDGVELSPSEAALAVLLPLVEQTFWAQEAERRRDVLSDDAKGPAPDRDRFRKFAQGFPRIKRRLRALEQAKVTDGSVDRIRWWLYHRWLIQQPEVYAAESLKLLVGAPANGSDHPRWVTDSLSEKRLMRFLQEHRAAPFATSRGDALHDSDTVAASAPDEHEVREPLVAALTKAAYAMAVDPVDLPEIVVEHLGISDSVNLDELRATVRGSDWRTSGTGRSLNAVCGHPAVQIALREHASRVDGLLRDINKANNPTLAPLSTLPPYADGSRVRLGGNTPEQLSDGIRFQLAEDRVQELLMGEELYGERDLAVREVYQNALDAVRYADRRREYLRRTGRPTAPWEGRIDFVQGVGDDGRPYLECRDNGIGMSVRELRDVFSQGGARFVDLPEYIEEQAAWAELPDPKIELHPNSRFGIGVLSYFMLADEIVVRTCRLGKDGRPGRLLQVSIAGPGNLFRVEDLGPGVECGTTVRLLLTQYRRPTSCVDVLQQVLWVAPYRTTAEHGARRHVWAPGEASLTGVELVQTSHLQSVPMSKRSSTLLPSSDPDLWWVDGRGWLLADGLWASTRALGEPHGFVLNLYGEWQPELSVNRSSIQDYDWERVKERISAAAPSLFTGRQSLATVSWLARLCGMSVDLADCVGAHAREADVPWEPGEGVVLPYSKVGFFLPDQALLPLVTGDFPAEANGHTASYLCNIPSPVLRWRLLTLYRAGLGEPLAAGAPDSPDPCARPSDLALLNTHGRFTRWDKDLAVWQHGHSGLGTQPSPALVRTGAPSLKLLFPWCDPDRTLTVTDIFKRVMHTELSAADVAGRLTELGYRVAPLHAWSTVVPDDLPLLLTGSFGTWLEPGAPLTAAQVCVSAARAECSTPQAAQRLRELGFDVPADVPVRETWTEEDRVVIQNLWQVSPDPAPSGLAAEVSPGQLTSVAHESGYSLHQAAELLRALGFTVETPDTELSDDDRAIMEYEGAQPWPYRPVPWAYVMAVARRFGSPESTAERLRELGFEVGAPRAVDEQLSKKDMEFLGSVVGHDPEEPLSLSELAEVAEESGVSLAEAAARLTSLGYVCEPAQALLSALRLQDVHIVRFGFMVPDPERHGPIRPADQYAAALHTGQYGPEIDDMREALRLLGYELGPDTEAWGRERNAEWDLTRSLERETPDLTLGSWNHVPLTLTTLVTVAARLSLPFHDVARKATALGLRHEAEGWFAPEPGEPGEPGEPGEPGEPEEPGHTPPR

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Crispr_ID: NZ_CP029191_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_8

3725899-3726001

Orphan

Consensus_repeat	Method
CAGCCCGTCCGGCGCTTGAGGACGAGCGCGCAGCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_8

>merge|NZ_CP029191|8|3725899-3726001|CRISPRCasFinder
CAGCCCGTCCGGCGCTTGAGGACGAGCGCGCAGCGCGACAACCCAGCCCACGGCCCGGGGGGTTTCAGCCCGTCCGGCGTTTGAGGACGAGCGCGCAGCGCGA

>NZ_CP029191|8|8|3725899-3726001|CRISPRCasFinder
CAGCCCGTCCGGCGCTTGAGGACGAGCGCGCAGCGCGA	CAACCCAGCCCACGGCCCGGGGGGTTT
CAGCCCGTCCGGCGTTTGAGGACGAGCGCGCAGCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150184865.1\|3733071_3733530_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239645
NZ_CP029191.1\|WP_150184863.1\|3727582_3728506_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP029191.1\|WP_150184851.1\|3714755_3715991_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235124
NZ_CP029191.1\|WP_150184860.1\|3723922_3725764_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277357
NZ_CP029191.1\|WP_150184862.1\|3727136_3727586_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP029191.1\|WP_150184864.1\|3731983_3733075_+\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377493
NZ_CP029191.1\|WP_150184852.1\|3715996_3716251_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340560
NZ_CP029191.1\|WP_150184867.1\|3735133_3736156_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NZ_CP029191.1\|WP_150188285.1\|3729726_3732003_+\|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl\|CDD\|235469
NZ_CP029191.1\|WP_150184857.1\|3720368_3721106_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP029191.1\|WP_150184859.1\|3722565_3723819_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP029191.1\|WP_150188284.1\|3728799_3729516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150184858.1\|3721102_3722563_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP029191.1\|WP_150184854.1\|3717326_3718088_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP029191.1\|WP_150184856.1\|3719245_3720277_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938
NZ_CP029191.1\|WP_150184855.1\|3718111_3719134_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP029191.1\|WP_150184861.1\|3726087_3727023_+\|mycothiol-synthase	unknown	unknown	gnl\|CDD\|132489
NZ_CP029191.1\|WP_150184866.1\|3733894_3735019_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
NZ_CP029191.1\|WP_150184868.1\|3736152_3737226_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NZ_CP029191.1\|WP_150184853.1\|3716267_3717113_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150184865.1\|3733071_3733530_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	6.28574e-38
NZ_CP029191.1\|WP_150184863.1\|3727582_3728506_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	4.23985e-67
NZ_CP029191.1\|WP_150184851.1\|3714755_3715991_-\|hypothetical-protein	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	1.26714e-08
NZ_CP029191.1\|WP_150184860.1\|3723922_3725764_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277357	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.2629e-129
NZ_CP029191.1\|WP_150184862.1\|3727136_3727586_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.95137e-26
NZ_CP029191.1\|WP_150184864.1\|3731983_3733075_+\|CHAD-domain-containing-protein	gnl\|CDD\|377493	pfam05235, CHAD, CHAD domain. The CHAD domain is an alpha-helical domain functionally associated with the pfam01928 domains. It has conserved histidines that may chelate metals.	5.76847e-09
NZ_CP029191.1\|WP_150184852.1\|3715996_3716251_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340560	cd17040, Ubl_MoaD_like, ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins. Ubiquitin-like (Ubl) domain found in a group of small sulfide carrier proteins This family includes ThiS, MoaD, CysO, QbsE, and their homologs, which are structurally homologous to ubiquitin (Ub) and may function as the sulfide donor for the biosynthesis of thiamin, molybdopterin, cysteine, thioquinolobactin, and other sulfur-containing natural products. Ub is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Ubiquitination is comprised of a cascade of E1, E2 and E3 enzymes that results in a covalent bond between the C-terminus of Ub and the epsilon-amino group of a substrate lysine. Like Ub, small sulfide carrier proteins in this family are adenylated at a diglycyl C-terminus by specific activating proteins. The adenylated C-terminus is subsequently converted to a thiocarboxylate, serving as the sulfide source. Those activating proteins are diverse and show little sequence similarity. This family also includes the small archaeal modifier protein (SAMP), including SAMP1, SAMP2 and SAMP3, which are Ub-like proteins that function as protein modifiers and are required for the production of sulfur-containing biomolecules in the archaeon Haloferax volcanii. SAMP1 and SAMP2 are involved in sulfur transfer during molybdenum cofactor biosynthesis and tRNA thiolation much like MoaD and Urm1, respectively. They can form covalent conjugates with their protein targets through an isopeptide linkage via their C-terminal diglycine motif in a streamlined archaeal E1-dependent pathway. SAMP2 also forms homo-conjugates through the intermolecular isopeptide bond between the C-terminal Gly and the Lys58 side chain, a feature that likely resembles polyubiquitination. SAMP3 conjugates are dependent on the Ub-activating E1 enzyme homolog of archaea (UbaA) for synthesis and are cleaved by the JAMM/MPN+ domain metalloprotease HvJAMM1.	5.15266e-10
NZ_CP029191.1\|WP_150184867.1\|3735133_3736156_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.59178e-82
NZ_CP029191.1\|WP_150188285.1\|3729726_3732003_+\|RNA-degradosome-polyphosphate-kinase	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP029191.1\|WP_150184857.1\|3720368_3721106_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.06194e-88
NZ_CP029191.1\|WP_150184859.1\|3722565_3723819_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	8.279e-22
NZ_CP029191.1\|WP_150184858.1\|3721102_3722563_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.57252e-51
NZ_CP029191.1\|WP_150184854.1\|3717326_3718088_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44713e-46
NZ_CP029191.1\|WP_150184856.1\|3719245_3720277_+\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	7.33e-64
NZ_CP029191.1\|WP_150184855.1\|3718111_3719134_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.97775e-102
NZ_CP029191.1\|WP_150184861.1\|3726087_3727023_+\|mycothiol-synthase	gnl\|CDD\|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	6.28737e-136
NZ_CP029191.1\|WP_150184866.1\|3733894_3735019_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.59822e-77
NZ_CP029191.1\|WP_150184868.1\|3736152_3737226_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	3.2157e-86
NZ_CP029191.1\|WP_150184853.1\|3716267_3717113_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.54507e-13

>NZ_CP029191.1|WP_150184860.1|3723922_3725764_-|bifunctional-metallophosphatase/5'-nucleotidase
MSAIPKHRRPRRRATRVLAVAAGLATVGALAASLPASAGQDHDRAGGGSKGKHSRTVDVQLLSFNDFHGNLQPPAGSSGQVTERQADGSEKKIDAGGVEYLATSLRTARKGNPYSVTAAAGDLIGASPLLSGLFHDEPTVEAMNKLDLDVTSVGNHEFDEGAKELARMQNGGCHPKDGCFEKGKDGKGKKFEGADYPYLAANVTDEKTGKPILKPYWVWKHKGVKVGFIGVTLEGTPDIVSADGVKGLKFHDEIETVNKYAKILDKQGVKSIVTLIHEGGVPKTQTYNYDCDSPGAGDGISGPITTIAKGITPKVDALVTGHTHNAYVCTIPDPAGKPRMVTSASSFGKLYTDTTLTYDRKTKDIVRTSVKSANHVVSREQAKAPDMTSLISRWDKLAAPVANKAVGYISGDIPGRGAGVPESPLGDLISDAQLAHAKSIDPEADLALMNPGGIRSDIVYKASGSEGDGVVTYGEAFTVQPFSNTVNLVDLTGAQLVTGLKQQVSGSNEASPKILQVSDGLTYTLDMTKSGADRVVADSIKLNGKAIDPAATYRVAMNSFLAGGGDGFAELGKGTKPVVGSDDLKAFNDYLTANSSADKPIAPPKADRITIVK
>NZ_CP029191.1|WP_150184859.1|3722565_3723819_-|DUF2993-domain-containing-protein
MRSPHRIATHPPDAPIDDDRTDRTDYTNPYDELAALASNPLEEFLHEDKSDGDGDTAEAEKPWTPPNHRRGSRRRNRFAGLPLAAKALVAVLVAAAFLALGDRWALLYAEHEAAEKLKDQMHLSAAPEVDIEGFPFLTQVLDKRVDKVKVTVPDVAADRISLAKVSATATNVTINGDGPTSIKGASIGEMNGEVLLSFDDLNRELGASQVTFTGRGKDEVLARGTLPVAGHDLKVRADARIQRNGDRGISTDIGGMSLQLGDLATYRPGTREKEGLHLSQKSADRVAEETAKAKALLSVPAIVERLGVPRGVVREALKSDAKLNELTGSPRFVNDVMGLNLIDVAMGHPELLKKLGLDPALLNGLSQLTRPVLADRLTLAFQLPKLPGAGTVALRDVTVEKEGIRVRIAGSGIGVGQ
>NZ_CP029191.1|WP_150184858.1|3721102_3722563_+|HAMP-domain-containing-protein
MNRALRRFRGLPLRSRLALLVATAVALAVAAAAVTCWFVVRNALLDSLDDALSSNRPKPGEVIQQIDIDAVAGGARCLREIPGRDQPDLYKQIIQVVAKNGTNCIVLGRQSIKVDASDSAVAARERTATYHDTTAANGEKYRVYTYPLEDSPELQLAVSVARPYSEIDDTLDNLALILLVVAGIGVLGAGAAGLWVARTGLRPVDQLTAAVEHVARTEDLSLRIPVEGDDEIARLSESFNSMTASLASSRDLQQQLIADAGHELRTPLTSLRTNIELLARSEETGRAIPPDDRKALLASVTAQMTELAALIGDLQELSRPDTGAGDGDGDAGGKIQVIPFHDLTRTAIARARLRGPELTITAELAPWYVRAEPPALERAIVNVLDNAVKFSPPGGTVEVTLDRGRLTVRDHGPGIPADELPHVFDRFWRSPSARSLPGSGLGLSIVARTVRQSGGEVTLEAAEGGGTVATVRLPGAATPPPESPAL
>NZ_CP029191.1|WP_150184857.1|3720368_3721106_+|response-regulator
MSPAEGDRTGDREQLRILIVDDEPAVREALRRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLTAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSYAPGAGQDAEGDTLAFADLRMDLATREVTRGTRTVELTRTEFTLLEMFLAHPRQVLTREQILKAVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLRGGE
>NZ_CP029191.1|WP_150184856.1|3719245_3720277_+|trypsin-like-serine-protease
MTETFRHSGEYPQQQSSAPVHHGGTQGGTAHGAWPPPPAFAPEEPQAPAPRRRRAKGPVALIAAVAIAAAAVGGGTAYAVQTLTGRDGGTSATSTDVVPTSKKGTVSGVAEAVSPSIVEVGATTAQGKSTGSGVITRSDGEIVTNNHVIAGATSVKVRTNDGRTYDAEVVGTDSKKDLALLQLKGASGLKPATLGNSDNVRVGDEVVAIGSPEGLTGTVTSGIISALDRDVTVATGEGQEQPQSPEGGWPFEFDGRQFNGDTGSSKTTYKALQTDASLNPGNSGGALIDMNGNIIGINSAMYSPSSSQGGSESASSGSVGLGFAIPIDAVKDDLGKLRSGSKT
>NZ_CP029191.1|WP_150184855.1|3718111_3719134_+|LacI-family-DNA-binding-transcriptional-regulator
MAKVTRDDVARLAGTSTAVVSYVINNGPRPVAPATRERVLAAIKELGYRPDRVAQAMASRRTDLIGMIVPDARQPFFAEMTHAVEQAASERGKMVLVGNSDYVEERETHYLRAFLGMRVSGLILVSHGLTDQAAAEIDAWDARVVLLHERPEAIDDVAVVTDDVGGAQLATRHLLEHGHEYVACVGGTAETPTVGDPVSDHVEGWRRAMREAGRSVEGRLFEAPYNRYDAYQVGLELLARPDRPTAIFCSTDDQAIGILRAARELRIDVPGELAVAGFDDVKEAGLTDPPLTTVASDRPAMARAAVDLVLDDGLRVAGSRRERLKLFPSRLVVRQSCGCK
>NZ_CP029191.1|WP_150184854.1|3717326_3718088_+|response-regulator-transcription-factor
MSSLLLLTNALQPSTEVLPALGLLLHSVRVAPAEGPALVDTPGADVILIDGRRDLPQVRSLCQLLRSTGPGCPLVLVVTEGGLAAVTADWGIDDVLLDTAGPAEVEARLRLAMGRQSITADDSPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGVEHESLIGTVRNVGYRFVTPEKADRAADAEKAKAAAPRGEQKEAAVRPAQR
>NZ_CP029191.1|WP_150184853.1|3716267_3717113_-|alpha/beta-fold-hydrolase
MNSGPAGQEARSSVPPLTRGQRGVQRRATLRTQDGVAVEAAHDPGPDPSGELAIVVAHGFSGDLARPHVRRIAGVLAQRAAVITFSFRGHGNSGGHSTVGDREVLDLAAAVEWARSLGYERVVTVGFSMGGSVVLRHAALHRGRTEARTDAVVAVSAPARWFYRGTAPMRRLHWVVTRPAGRAVGRYGLRTRIHPHEWDPVPLSPVESVPLIAPTPLLVVHGDRDPYFPLDHPRMLAAAADGGAELWLEEGMGHAEHAASDELVGRIASWATASWTSATAD
>NZ_CP029191.1|WP_150184852.1|3715996_3716251_-|MoaD/ThiS-family-protein
MVNGTIRYWAAAKAAAGVAEEPYEAATLADALDAARERHPGELVRVLQRCSFLVDGAPVGTRRHETVRLAEGGTVEVLPPFAGG
>NZ_CP029191.1|WP_150184851.1|3714755_3715991_-|hypothetical-protein
MSDQPYEGYEGYDGYAPYPHQQYPGQQPYPEEQQQQQQPYPDQQQQQPYPDQQQYYAQQQQYGHDQYGRDQYGRPYPQQQYYAEPQQQYGQEHHTQQWEGQTWETQVGHQAPAAVDVTETAYLPPQSAAPEPAPEPEPGPAPAAGDASSYGPATTTGNPRITDAQRARAEGRSPIIEPGMQPAALTAVLGLLLAAGAAVGQYALLVPLVLLQAVTAAGWFRLNGMWPARQGIALAFLGGVVADVALLAVGKEDAPAAVLGTLGVWVLLVLVLQLRSHAGADERMYGLMATVVSSALAIVAAGHLAAAADAVTVGGIAVAVAILARALPLPTAASVIVALLAAAGAGIAVGGTTEYGSEGALLALGAGVCALIGHRVASYDYPSRFVHMTAGVALPLAAAAPAVYVLGRAIG
>NZ_CP029191.1|WP_150184861.1|3726087_3727023_+|mycothiol-synthase
MIHDRPADAPTPLRKIDTLAELTPAQAEAVLELLAEAARTDGQQAVSEQGRLQLRGGARDGVRHLLLTVDDQLVGYAQLEDTDPVEAPAAELVVHPSRRGHGHGRALGTALLAESGRRLRVWAHGGHSAARHLAQVLGLALFRELRQMRRPLADLDLPDPTLPEGISVRTFVPGQDDEAWLALNAEAFAHHPEQGALTQRDLDDRKAEPWFDPAGFFLAARESDGELVGFHWTKVHAEERLGEVYVVGVRPGAQGGGLGKALTTTGLRHLAEAGLPTAMLYVDADNKAAVSVYERLGFITHETDLMYRTES
>NZ_CP029191.1|WP_150184862.1|3727136_3727586_+|GntR-family-transcriptional-regulator
MVEYRIDRRSGVATYLQIVQQTRQALRLGLLEPGDKLPTAREVVEATAINPNTVLKAYRELEREGLVEARRGLGTFVRRTLGAAPADSPLRGELAEWAARARQAGLERDDVAALFTAVLDDQFGDPQRPKQHQKQHQDQQPQATQGDPV
>NZ_CP029191.1|WP_150184863.1|3727582_3728506_+|ATP-binding-cassette-domain-containing-protein
MTDTGTALEATALTRRFGRNRHALRDCTFRLPTGRVCAVVGPNGAGKSTLLALAAGLDRPTSGTIRVLGTDPAEARTRIAYVAQDKPLHPQLTIADTLRLGAELNAGIWDMAAAEHVVNSGDGLDRTARIRTLSGGQRTRVALALALGKRAELLLLDEPMADLDPLARHQLMGTLMAEAAEHGTTVVMSSHIVSELAEACDYLLLVSGGGIRLAGGIDDLIGAHRLVTGRGPADRLHPHTVVESRAAGRGLTALIRTDGPVADDWDVEEPSLEELLLAHLRSPEAPPLLSPGSTPRERGTQELGVSA
>NZ_CP029191.1|WP_150188284.1|3728799_3729516_+|hypothetical-protein
MAMLGLPCLIGAFVAGPIVAKDLESGTYTWAWTQSVTPARWLAARLAVVAALVVSGVVLFTAVQRWAWTTGPELEYGRAAWYERAMYGSLGTVGIGYALLGLAVGALAGLLLRRVLLAMAAAAAVTLGAVVLLPLARHHLWATETATWAPTYPQATPNFGLPVERGMLTADGKRLPESLCWGPDPKACIAEHHVTGWYSDFHPSSHFWPLQLVETGILLALAAAVTYAAFRILRRRVA
>NZ_CP029191.1|WP_150188285.1|3729726_3732003_+|RNA-degradosome-polyphosphate-kinase
MVVPARNNGSMSQQNTQGHVQHAQPSVGSIAAHRPATIAATVSDLDPDIDADLDAYDEDAAVGHDGAELPQGRFLDRERSWLAFNERVLELAEDPNTPLLERANFLAIFASNLDEFFMVRVAGLKRRIATGVATRSASGLQPREVLELIWNRSRELMARHAACYQEDVAPGLADEGIHLVRWHELTEKEQSRLFTLFRQQIFPVLTPLAVDPAHPFPYISGLSLNLAVVVRNPVSGHQHFARVKVPPLLSRFLEASPQRYVPIEDVIAAPAHLQELFPGMEIQEHHMFRLTRNEDLEVEEDDAENLLQALEKELMRRRFGPPVRLEVEESIAPNILSLLVRELKISEAEVYPLPGPLDLTGLFSIAKLDRPELKYPKFVAGTHRDLAEVESASAPDIFAALRERDVLLHHPYDSFSTSVQAFLEQAASDPDVLAIKQTLYRTSGDSPIVDALIDAAESGKQVLVLVEIKARFDEQANIKWARKLEEAGCHVVYGLVGLKTHCKLSLVVRQEGDSLVRYSHVGTGNYHPKTARLYEDLGLLTSNAEVGADLSDLFNRLSGYSRRETYRRLLVAPKSLRDGLISRINKEIQHHRAGRPAYVRIKVNSMVDEAVIDALYRASQAGVEVDVWVRGICAVRPGVEGLSENIRVRSVLGRFLEHSRVFAFGNGGEPEVWIGSADMMHRNLDRRIEALVRVQDPAHRAALSRLLETGMSDTTASWHLGADGNWTRHSADPDGQPLRNVQEMLIDARRRRRGTATP
>NZ_CP029191.1|WP_150184864.1|3731983_3733075_+|CHAD-domain-containing-protein
MAQQHHEMTDTGAGPGTAGEALTGYLQDQATEFLRSLRLHRESSTDAQGAEESLEAARSLRRAARRIGATLHTFRPLLDAEWASSLRPELAWLSGTLGQEHAYASRLDRLLEALHRLSGPPPVPAPAALATSGAGGRTARQNGWAQPSVPSAADSGTPRGLAVGAAKAAALLERQLTLARTRAHSTALQAFGSSRFHAVADHVAVLASEVPLSGTAEDLVPLADQAESTLAEAVAVLPLGQAGHPYNAGALSHGLAPTDTAPDAQDAPWLKVRSLLRLYRYAQEVLVGHDRPDPRIADASHALNVHREAASAAAAAAHAARTPRIAPATAYALGVLHADQRHEVEAARFVFQRAWLREEARTR
>NZ_CP029191.1|WP_150184865.1|3733071_3733530_+|NUDIX-domain-containing-protein
MTYGKEGRPGEEATVLAAGCVLWRPDRAGRDGIELALVHRPKWSDWSHPKGKLKRGETARDAALREVLEETGMTCALGAELPTAHYRDAQDRPKEVRYWAAEALSGTFAPNSEVSHLRWLAPDEARRLLTRERDAELVTDLLAALAAPRGRA
>NZ_CP029191.1|WP_150184866.1|3733894_3735019_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLQRKNRLRALSLGAIAVSGALALTACGSDDTSSGDGGKETNANANIKCDDAKGQLAASGSSAQKNAIDAWRKVYTTNCKDVQLNYNPTGSGAGITAFLQGQTAFAGSDSALKPDEVEKSKKVCTGSQAIDLPMVGGPIAIGYNVPGVDSLTLDAKTLGDIFNNKIKAWDDKAIKKLNPDAKLPSTKIQPFHRSDESGTTDNFTKYLKGAAPSAWPYEPGKSWEPKGGQSANGSAGVAGQVKQTAGAISYFELSYAGEGVKTVDLKTEAKEPVKATVDNASKAISEAKVVGKGKDLALELNYKPTAEGAYPITLVTYEVVCEKGNKKDTLAATKSFLTYIASEDGQNVLKDNDYAPIPAEIITKVRSTVAGLS
>NZ_CP029191.1|WP_150184867.1|3735133_3736156_+|phosphate-ABC-transporter-permease-subunit-PstC
MDIPSNTTAPPPVDDAGPTAPVSKAAARGATRPGDKIFLGLSRGSGIVLLVIMAAIAAFLTYRTTVALADNTGNFLTTFEWDPAGISTGGKPYFGIAVLVFGTVVSSVIALAIAVPVAIGIALFISHYAPRKLAAPIAYVIDLLAAVPSIVYGLWGALVVAPNLTGLYSWLDDYLGWTGVFSYNGEAPRSLMTVGILLAIMILPIITNVSREVFLQAPKMHEEAALALGATRWEVIRMSVLPFGRSGIISASMLGLGRALGETIAVATVLSPNFLINTSVLDYGGGTFAQNIASKFNEASEYGQDALIASGLVLFVITLLVNGAARLIIARRKEYSGANA
>NZ_CP029191.1|WP_150184868.1|3736152_3737226_+|phosphate-ABC-transporter-permease-PstA
MSTTTPTPVGPLVKRPSTLKAATLPRWTPLAMAAGSAAVAVGIGAAAGLESRIQWGLMAALLYIAGSYVLAMTVEGARQAKDRLATSLVWVMFLLAVVPLASLIYETVQRGIKVFDGYFLTHSMGVVADEETGGGIYHAIIGTLEQVLLASVIAVPIGLLTAVYLVEYGRGKLAKTVTFFVDVMTGIPSIVAGLFVLSFWILILGFDYSGWAGAMALAILMMPVIVRSTEEMLKLVPNELREASLALGVPKWRTILKVVLPTAIGGITTGVMLAVARIAGETAPVLLLVWVNPLINTNPFDGAQGSLPLYIYQQYAAGTQASYDRAWAAALALIGFIMILNMAARAVARWKAPKTGR

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Crispr_ID: NZ_CP029191_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_9

4201934-4202056

Orphan

Consensus_repeat	Method
GCCAGGGTCGCGGCTCCGCCAGCCGCGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_9

>merge|NZ_CP029191|9|4201934-4202056|CRISPRCasFinder
GCCAGGGTCGCGGCTCCGCCAGCCGCGCGGCGTCGCCGCTCGGGTCATCCCCTTGCGCGGCCGGGTGCGGCCCGGTCCATCGGGAGCGGTCGCCAGGGTCGCGGCGCCGCCAGCCGCGCGGCG

>NZ_CP029191|9|9|4201934-4202056|CRISPRCasFinder
GCCAGGGTCGCGGCTCCGCCAGCCGCGCGGCG	TCGCCGCTCGGGTCATCCCCTTGCGCGGCCGGGTGCGGCCCGGTCCATCGGGAGCGGTC
GCCAGGGTCGCGGCGCCGCCAGCCGCGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150185225.1\|4211766_4212222_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133387
NZ_CP029191.1\|WP_150185217.1\|4203057_4203354_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP029191.1\|WP_150185224.1\|4210568_4211762_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237665
NZ_CP029191.1\|WP_150185213.1\|4195286_4196774_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP029191.1\|WP_150185221.1\|4204832_4205249_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP029191.1\|WP_150185208.1\|4189833_4190352_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185218.1\|4203357_4203531_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP029191.1\|WP_150185219.1\|4203534_4203729_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP029191.1\|WP_150185209.1\|4190378_4190618_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185223.1\|4209818_4210535_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|184546
NZ_CP029191.1\|WP_150185210.1\|4191929_4192427_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NZ_CP029191.1\|WP_150185216.1\|4200150_4201557_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP029191.1\|WP_150185214.1\|4197063_4198530_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP029191.1\|WP_150185215.1\|4198600_4199995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214549
NZ_CP029191.1\|WP_055565996.1\|4191345_4191921_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NZ_CP029191.1\|WP_150185212.1\|4193659_4195150_-\|integrin-like-protein	unknown	unknown	gnl\|CDD\|379232
NZ_CP029191.1\|WP_150170157.1\|4207953_4209819_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP029191.1\|WP_150185222.1\|4205314_4207582_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP029191.1\|WP_150185220.1\|4203732_4204584_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP029191.1\|WP_150185211.1\|4192527_4193529_-\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|377418

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150185225.1\|4211766_4212222_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133387	cd01279, HTH_HspR-like, Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.04664e-44
NZ_CP029191.1\|WP_150185217.1\|4203057_4203354_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	1.11045e-07
NZ_CP029191.1\|WP_150185224.1\|4210568_4211762_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237665	PRK14295, PRK14295, molecular chaperone DnaJ.	0
NZ_CP029191.1\|WP_150185213.1\|4195286_4196774_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	0.00388851
NZ_CP029191.1\|WP_150185221.1\|4204832_4205249_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	1.36043e-13
NZ_CP029191.1\|WP_150185222.1\|4205314_4207582_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.10901e-83
NZ_CP029191.1\|WP_150185218.1\|4203357_4203531_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	4.74178e-09
NZ_CP029191.1\|WP_150185219.1\|4203534_4203729_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	4.12584e-11
NZ_CP029191.1\|WP_150185223.1\|4209818_4210535_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|184546	PRK14163, PRK14163, heat shock protein GrpE; Provisional.	8.52337e-106
NZ_CP029191.1\|WP_150185210.1\|4191929_4192427_+\|phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	1.02736e-36
NZ_CP029191.1\|WP_150185216.1\|4200150_4201557_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	0.000333691
NZ_CP029191.1\|WP_150185214.1\|4197063_4198530_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	3.52827e-05
NZ_CP029191.1\|WP_150185215.1\|4198600_4199995_-\|hypothetical-protein	gnl\|CDD\|214549	smart00191, Int_alpha, Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.	0.000801031
NZ_CP029191.1\|WP_055565996.1\|4191345_4191921_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	3.88315e-95
NZ_CP029191.1\|WP_150185212.1\|4193659_4195150_-\|integrin-like-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.14279e-05
NZ_CP029191.1\|WP_150170157.1\|4207953_4209819_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP029191.1\|WP_150185220.1\|4203732_4204584_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.28786e-08
NZ_CP029191.1\|WP_150185211.1\|4192527_4193529_-\|YIP1-family-protein	gnl\|CDD\|377418	pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.	1.48834e-10

>NZ_CP029191.1|WP_150185216.1|4200150_4201557_-|VCBS-repeat-containing-protein
MRSAGVRGAGRGTRRGGFAGAAAALSCALLLAGCGSHDDDATSDDASHKPVSMAGKGAPQQPIPRGKGGKGGKGSTVEDDFNGDGARDLVLDDLVHPDHSDDAGIGIVYGRGQGRRGLNPGARQLVSAHSNGARTNGRLPAAFDSEASCDLDGDGFSDLLVSTDPPYDGQGQPPVPLQILFGSPKGLTGKAVKLRVPPQARFGNDWPDQPVCGDFDGDGANDLVLHATGARLTYLRGPFKRNGAPRAAGKPVTAPGNNLVTGRATDVDGDGYDDVLVRKAADAAGAATSALVMGGPQGPDETGVLLPAGKDIAFGRFGKGKGMDAAVAGPKGVALRYDVPGTLRESLEAKDMAVDTGDLDGDGLSELVLNGAASGSGGSAGDIRVFRGRTSELSSDATALIQPPDHGMTEVLHVADFDGDARADLVVRTYRGDSQDIVGVYQGRPGDLVARKPLVTFSTAEFLALRGR
>NZ_CP029191.1|WP_150185215.1|4198600_4199995_-|hypothetical-protein
MRVRNLAVTATVAALAATGLALPMAGTASAAPALKDDFNGDGYRDLAIGSPDSNSVTITYGSANGVSKGRSVTVTQNTAGVPGVTEPGDEFGESVTSGDVNHDGFADLIVGAPGEQVTGKPSGSVSVVYGGRNPFTSGGRALNSPADTTGRFGEAAVWTDLDYDGSPQLAVISGDNWYYYTGTGENGNVYGLEVDFIPEGARLDGMVAGNFKYKDGVGFVLSGERADGGAWTAHMNGGVGDYGYRAEILAEGGDPTATRDAATAGDVDGDGYDDLITGNPRDAAGGKGGSVTVRRGGDGAFGAPVTYSQDSAGVPGADETGDGFGAAVSAGDVTGDGLADLAVGAPGETVDGVAASGSVTLLTSVRGAFTSGRAWHQETTGVPGVAEEGDRFGTSVRLKDINKNGKADLATGALGEDIGTTRDVGAVWVLRGTSTGLTTSYATSFNGSDFGVGGAGAGFGRALR
>NZ_CP029191.1|WP_150185214.1|4197063_4198530_-|VCBS-repeat-containing-protein
MSTYARNHLLGAAALCAATALGVTGLTAGNAAAATPAAADAPSKIRGDYNGDGYVDLAVGVPSATVDGKAKAGYVNVVWGGASGLGKHGSTTVSQSTAGVPGTAEAGDGFGYAVASDDMNGDGYSDLIVGAPDEDTTVGLSVGTVAVVWGGANGFKGGFTAANGNFDSSQYGAQLATGDFDKDGDNDIAFNAHFDESSSVVVRPGPFTAGSPATLDRVTGWHFGGSTALVGGDFDGDGGDDLAVSYSGMEIGGTTVMNRASGQWKETWRTSDRTNTSLAAGDFDGDGTTDLAVGNVQPNPEVEETTCADRLGGAILTVYGKKDGALGDGGTACTTQDSPEVGGTAEADDNFGAHLAVGDLDGNGGADLIVGADAEAVGTARNAGTYWTLASAGAGKPFTGPAFSQNTAGVAGTAEADDHFGQSVATGDYNGDSRPDVAVGAPGEDSRKGGVWYAPSAKDGGPRPEVTSVTPGKLGLAGAREYGMVLGR
>NZ_CP029191.1|WP_150185213.1|4195286_4196774_-|VCBS-repeat-containing-protein
MAKHKRTSTTGRSRRTRLAAATAATAALTGGLLAATGATASAAPAEPLPSHEADFNGDGVADLATSAAYANVGGKDQAGQVVVTYGGSSLRHKTYSQNSAGVPGSAEAGDIFGYDTAYGDFDRDGYDDLAIAAPGEDVGSDKDGGTAQILWGSPNGLSGGTTVKDPRPSGHDYFGGPIEAGDFDGDGNTDLAIGARSGAATIDVVDGKISRTSGTGSGHYTVKPAIQSGEGAGPFNLHSGDVNGDKREDLIVDGYSTGDSYNANLWVPGTADGLKTTNQQRLPGGIITDVGDTDSDGYGDIVIGLEWDDEIAGANKGGSVYVVHGSANGPYGGTQVFTQDTDGVPGAGEKGDLFGNELDLGDINGDGHLDLVVGAAGEDLGGVTDAGSVTVIYGKADGSGLSTEGAVFLDQNTPGVPNSNEKNDYFGADVHVDDLNGDGRGDVTVGAYGENGANGALYPLTSKSDGTLAGSTGVYTSTVGVSGAGTPRLGMNFAD
>NZ_CP029191.1|WP_150185212.1|4193659_4195150_-|integrin-like-protein
MRARTHTLALAAATVLAATGLTLPLTTSATAAPAAAPAAAPLKADFDGNGYADLAVGVPGGTVDGKAKAGYVSVVFGGPGGPGSSNVRRITQATVEVPGTPEAGDRFGAAVTTAYIDDDKYADLVIGAPGEDIDGKTDAGSVTVLYGTGDGFALANTAARGAKAGDVYGNALAAADFTGDTDVDLAIGGKDQIVFNANPYTADTTPGMARRMGGRAPVLTTGDFDSDGLPELAVAYYEQSPTRTQSHVQLYRYDKNDEVPGDLDLTWSSDNSAANALAAGDFNGDGHDDLALGNCREIADENIDDPCGPEELAEGGGIHIHYGDGDGLVWEGQTLNQDTPGVPGVAEKGDDFGNALAAADIDGDGKDDLVAGAPGEAIGSAAGAGAVTVLKGGANGILTEDGKAVGAVSYQQNSPNIPGGAEAGDRFGAALDFADHNGDGSPDLSAAAPGENASAGGVWNLPHLATGTTGTTVVTPKSLGLETVSGPLTYGASLAH
>NZ_CP029191.1|WP_150185211.1|4192527_4193529_-|YIP1-family-protein
MAGFRIGRGRDNRAPRPQQQPRPHQQPRQQPYGQQAPQQGGQQPYGYPPAPSAPQYGGGAQQYGGGAPQGGSRPYGGGGGGNQQWPQAGGGAGNHGEPEYFGGHDDRGHGAPQGGYDPYAANNPGHTQAFSIGEDPYTQGDTYRAGQASAAPVGPRLHWKDLLRGIVLRPGPTFFQMRDYAMWAPALIVTFLYGALAIFGFDEAREDAINATLSSAVPFVLTTGVAITISAFILGVVTHTLARQLGGNGAWQPTVGLSMLIMSLTDAPRVIVAMFLGGGQPFVQLLGWATWIAAGALLTTMVSKSHDLPWPKALGASTIQLLAILSIIKLGTF
>NZ_CP029191.1|WP_150185210.1|4191929_4192427_+|phosphoribosyltransferase
MSDVRENLSYEKFGRAVRELAQTIADDGYQPDVIISIARGGVFVAGGLAYALDCKNIHLVNVEFYTGVGTTLEMPVMLAPVPNVIDFTDKKVLIADDVADTGKTLKLVHDFCLDHVAEVRSAVIYEKSHSLVKCEYVWKRTDEWINFPWSVEPPVVKRQGQVLDA
>NZ_CP029191.1|WP_055565996.1|4191345_4191921_+|dCTP-deaminase
MLLSDKDIRAEIDSGRVRIDPYDESMVQPSSIDVRLDRYFRVFENHRYPHIDPSVEQADLTRLVEPEGDEPFILHPGEFVLASTYEVISLPDDLASRLEGKSSLGRLGLVTHSTAGFIDPGFSGHVTLELSNLATLPIKLWPGMKIGQLCMFRLTSPAEAPYGSERYGSRYQGQRGPTASRSFLNFHRTQV
>NZ_CP029191.1|WP_150185209.1|4190378_4190618_-|hypothetical-protein
MRVLVMLSKAILTTLATWLTLTILIALPALLPPRWEYYLISPASVGLYLLAMLTAPPIACWKFRDWIRTVPGDEGRTNI
>NZ_CP029191.1|WP_150185208.1|4189833_4190352_+|hypothetical-protein
MADLASLIQLLGAGSVGAVVTQYVSAGPERRRSRATAREAMATLEQAHWAHGRDNEWPQLRTAVHAFESAAMAAGVPREVSGWYVTTRVAIYLESRREWERNPDPEFGGGVSTTYMDAFSGATELVYQSLWHPQRSRFTWRRRLKRSKEHTRATAAGAPSILRDIEDRPTAL
>NZ_CP029191.1|WP_150185217.1|4203057_4203354_-|DUF397-domain-containing-protein
MTQWQKSSFSGPADGSQCVELARDEFHLLLRESDFPDHALTLYPPSPRRPPQEAVDCGPRRMVTGAARCDPECGASGPAVKGAPFGRVGYADSAPLHP
>NZ_CP029191.1|WP_150185218.1|4203357_4203531_-|DUF397-domain-containing-protein
MPPWQKSSFSAPGDGNECIELAKVEHGLLLRESDTPDRRLALTSDTLGALLRQIQKP
>NZ_CP029191.1|WP_150185219.1|4203534_4203729_-|DUF397-domain-containing-protein
MPDWQKSTFSGGGDGNECIEVARDKSDLLLRESDAPDDILALTPEALSALISHATHSDATRKAV
>NZ_CP029191.1|WP_150185220.1|4203732_4204584_-|helix-turn-helix-domain-containing-protein
MPARIQPTARQRRLGAELRKLRESAGLSSGEAAGLLGVKQAQMSQFEAGNAGINEERVRRLAAHYACADAELIACLADMATDTTRGWWESFRGVLPPAFLDLAELEHHAHFMHVIGTAQVPGLLQTADYARAVFAFWRPELPASELAPRVEHRLRRAAVLNREEPAPYIAVLHESVLQTRVADRGVSRTQLREILRKSEMPNVTVRVVPFDVDGFAGAGTTLFYAGGPVAALDTVQRDAPYGSSFIDADAQLLAMRTLFRKVEAMALEPGPSQDLIHRLLKEL
>NZ_CP029191.1|WP_150185221.1|4204832_4205249_+|ATP-binding-protein
MPETETWTYTLTIPNDPLAVPVSRHTLRLILKAYGLPHLAEAAELVATELIANAVQHTKGPAALRMQWAGAVLRIGVWDTDPTPPSPAKKATGWDETAGRGLAIVRECADGWGWCARERDEGRGKLVWCELTGVVAAA
>NZ_CP029191.1|WP_150185222.1|4205314_4207582_-|4Fe-4S-dicluster-domain-containing-protein
MQLAAIIVSLVLIAVGVALFGRAIVQIYQFVRLGQPVPAGLRTDNPFQRTVTVVKEFLGHTRMNKWGIVGFAHWFVAVGFFSLLLTIVNAIGQLFKADWMLPIIGDWAPYNMFVEFIGTMTVLGILTLIVIRQLNRPDRPGRKSRFAGSKTGQAYFVETVILIVGVCIFTLHALEGAQHHVDSYEASFFISYPFVSWFAGMDLSTLQNLTYFFAGLKIATSFIWMIVVGLNTNMGVAWHRFLAFPNIWFKREADGGTALGELQPMTSGGKPIDWEDPGEDDVFGVSQVEQFSWKGILDFSTCTECGRCQSQCPAWNTGKPLSPKLLIMSLRDHAHAKAPYLLAGGGKTMEGEEKATEEQLKDVPAAALAEAERPLIGTHEENGVIDPDVLWSCTTCGACVEQCPVDIEHIDHIVDMRRYQVMIESAFPSEAGTMLKNLEKKGNPWGLAKKQRLEWTKEVDFEVPVVGKDIEDLTEVEYLYWVGCAGALEDRAKKTTKAFAELLHIAGVKFAIMGGDEKCTGDSARRLGNEPLFQQLGQENVATLNMAFGEDDEDESTKKPKTAKKIVATCPHCLNTLGNEYPQLGGDYEVIHHTQLLQHLIDEGKLIPVTPVEGLITYHDPCYLGRHNKIYTPPREIIGKVPGLRNEEMHRHKERGFCCGAGGARMWMEERIGKRINTERVDEALSLNPDIVSTACPFCLVMLTDSVNGKKNDGQAKESLQVVDVAQLLLDSVKTPADPADEAESADEPEPEPVK
>NZ_CP029191.1|WP_150170157.1|4207953_4209819_+|molecular-chaperone-DnaK
MARAVGIDLGTTNSVVSVLEGGEPTVITNAEGARTTPSVVAFAKNGEVLVGEVAKRQAVTNVDRTIRSVKRHMGTDWKVDIDDKGFNPQQISAFILQKLKRDAESYLGEKVADAVITVPAYFNDSERQATKEAGEIAGLNVLRIVNEPTAAALAYGLDKDDQTILVFDLGGGTFDVSLLEIGDGVVEVKATNGDNHLGGDDWDQRVVDYLVKQFNNGHGVDLSKDKMALQRLREAAEKAKIELSSSTETTINLPYITASAEGPLHLDEKLTRAQFQQLTSDLLERCKTPFHNVIKDAGIQLSEIDHVVLVGGSTRMPAVAELVKELTGGKDANKGVNPDEVVAIGASLQAGVLKGEVKDVLLLDVTPLSLGIETKGGIMTKLIERNTTIPTKRSEIFTTAEDNQPSVQIQVYQGEREIAAYNKKLGMFELTGLPPAPRGVPQIEVSFDIDANGIMHVTAKDLGTGKEQKMTVTGGSSLPKDEVNRMREEAEKYADEDHARREAAESRNQGEQLVYQTEKFLKDNEEKVPGDVKTEVEEAVNELKEKLKGEDTAEIRTATEKVAAVSQKLGQAMYADAQGAQAAGGPEGAAPGADQAKEDDGVVDAEIVDDEKPGDAKGGAA
>NZ_CP029191.1|WP_150185223.1|4209818_4210535_+|nucleotide-exchange-factor-GrpE
MTEETPGFGENAEKPDVPSGATPDDAAPKAAEPSTEESPAAPAGDAAANKTSAQDAQDVGLTAQLDQVRTALNERTADLQRLQAEYQNYRRRVERDKVTVKEIASANLLSELLPTLDDIGRAREHGELVGGFKSVAESLETVVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPARVAVAEPQPGAQTVKGEEPEGSAGSAAEKADEKETGGPDEG
>NZ_CP029191.1|WP_150185224.1|4210568_4211762_+|molecular-chaperone-DnaJ
MSTKDFIEKDYYKVLGVPKDATEAEIKKAYRKLARENHPDANTGNTKAEERFKEISEANDVLGDPKKRKEYDEARALFGNGGFRQGPGGGGGSFNFDLGDLFGGGAPGGGGAAGGGFGGGLGDVFGGLFNRGGAGAGAGTRTQPRRGQDIESEVTLNFTEAVDGATVPLRMSSQAPCKACSGTGDKNGTPRVCPTCVGTGQVSRGGGGGFSLTDPCMDCKGRGLIAQNPCEVCGGSGRAKSSRTMQVRIPPGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDTHPVFGRKGDNLTVTVPVTYPEATLGGEVKVPTLGGPPVTLKLPAGTPNGRTMRARGKGAVRKDGTRGDLLVTVEVAVPTSLSESAKDALESYREATAGDDPRAELFQAAKGA
>NZ_CP029191.1|WP_150185225.1|4211766_4212222_+|MerR-family-transcriptional-regulator
MDRVGRRRNPYQLTDETPVYVISVAAQLSGLHPQTLRQYDRLGLVSPDRTAGRGRRYSARDIELLRTVQQLSQEEGINLAGIKRIIELENQVAALQSRVAELSAAVDGAAAAMQQREAAVHASYRRDLVPYQDVQQASALVVWRPKRPTDQ

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Crispr_ID: NZ_CP029191_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_10

4254362-4254452

Orphan

Consensus_repeat	Method
GGTTGCTCGCGCAGTTCCCCGCGCCCCTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_10

>merge|NZ_CP029191|10|4254362-4254452|CRISPRCasFinder
GGTTGCTCGCGCAGTTCCCCGCGCCCCTGGGGGAGTCCACCTTCCGTGCGGGCCGCATGTGGTTGCTCGCGCAGTTCCCCGCGCCCCTGGG

>NZ_CP029191|10|10|4254362-4254452|CRISPRCasFinder
GGTTGCTCGCGCAGTTCCCCGCGCCCCTGGG	GGAGTCCACCTTCCGTGCGGGCCGCATGT
GGTTGCTCGCGCAGTTCCCCGCGCCCCTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150185258.1\|4249448_4250054_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153234
NZ_CP029191.1\|WP_150185259.1\|4250231_4250879_+\|DUF4956-domain-containing-protein	unknown	unknown	gnl\|CDD\|379819
NZ_CP029191.1\|WP_150185255.1\|4245504_4247013_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP029191.1\|WP_055569715.1\|4262209_4262809_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP029191.1\|WP_150185254.1\|4244224_4245508_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP029191.1\|WP_150185266.1\|4256839_4259260_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133031
NZ_CP029191.1\|WP_150185262.1\|4253002_4253713_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP029191.1\|WP_150185264.1\|4254655_4256011_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|235687
NZ_CP029191.1\|WP_150185269.1\|4261795_4262137_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP029191.1\|WP_150185260.1\|4250875_4251682_+\|VTC-domain-containing-protein	unknown	unknown	gnl\|CDD\|143622
NZ_CP029191.1\|WP_150185257.1\|4248972_4249452_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP029191.1\|WP_150185267.1\|4259323_4259974_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172376
NZ_CP029191.1\|WP_150185263.1\|4253823_4254333_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NZ_CP029191.1\|WP_150188329.1\|4260106_4260721_+\|deaminase	unknown	unknown	gnl\|CDD\|223340
NZ_CP029191.1\|WP_150185265.1\|4256147_4256843_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP029191.1\|WP_150185256.1\|4247088_4248891_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP029191.1\|WP_150185270.1\|4262801_4263461_+\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP029191.1\|WP_150185261.1\|4251620_4253003_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP029191.1\|WP_150185271.1\|4263557_4263941_+\|addiction-module-toxin-RelE	unknown	unknown	gnl\|CDD\|227028
NZ_CP029191.1\|WP_150185268.1\|4260737_4261553_-\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375613

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150185258.1\|4249448_4250054_-\|glutamine-amidotransferase	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	7.21742e-63
NZ_CP029191.1\|WP_150185259.1\|4250231_4250879_+\|DUF4956-domain-containing-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	1.23e-60
NZ_CP029191.1\|WP_150185255.1\|4245504_4247013_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.78339e-33
NZ_CP029191.1\|WP_055569715.1\|4262209_4262809_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	6.69424e-125
NZ_CP029191.1\|WP_150185254.1\|4244224_4245508_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP029191.1\|WP_150185266.1\|4256839_4259260_+\|glycosyltransferase	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	4.66334e-87
NZ_CP029191.1\|WP_150185262.1\|4253002_4253713_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.49744e-77
NZ_CP029191.1\|WP_150185264.1\|4254655_4256011_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP029191.1\|WP_150185269.1\|4261795_4262137_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	7.44303e-38
NZ_CP029191.1\|WP_150185260.1\|4250875_4251682_+\|VTC-domain-containing-protein	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	6.15666e-31
NZ_CP029191.1\|WP_150185257.1\|4248972_4249452_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.48654e-13
NZ_CP029191.1\|WP_150185267.1\|4259323_4259974_+\|hypothetical-protein	gnl\|CDD\|172376	PRK13855, PRK13855, type IV secretion system protein VirB10; Provisional.	0.00782506
NZ_CP029191.1\|WP_150185263.1\|4253823_4254333_+\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	0.00426644
NZ_CP029191.1\|WP_150188329.1\|4260106_4260721_+\|deaminase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.62539e-10
NZ_CP029191.1\|WP_150185265.1\|4256147_4256843_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.38271e-29
NZ_CP029191.1\|WP_150185256.1\|4247088_4248891_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.26395e-79
NZ_CP029191.1\|WP_150185270.1\|4262801_4263461_+\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	2.23904e-51
NZ_CP029191.1\|WP_150185261.1\|4251620_4253003_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.17636e-30
NZ_CP029191.1\|WP_150185271.1\|4263557_4263941_+\|addiction-module-toxin-RelE	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	2.95739e-40
NZ_CP029191.1\|WP_150185268.1\|4260737_4261553_-\|SLATT-domain-containing-protein	gnl\|CDD\|375613	pfam18183, SLATT_2, SMODS and SLOG-associating 2TM effector domain 2. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family is the only prokaryotic SLATT family to exist as a standalone domain, with no as-yet discernable genome associations.	7.59718e-113

>NZ_CP029191.1|WP_150185263.1|4253823_4254333_+|hypothetical-protein
MRKWRNAVVTAAWVAVGTAAGALGAWQLASSDSDGAGGAAHSRPLDEAAVRKALTASTPTPTSRSTSTPPTPPTPTSTPTSTPSAERSTVRFTGGSATVECRADGTVRLVSWSPADGFHIDDDVERGPGAVARLEAEPGDDDDQPDLPYEIRCAGGTPKAKILPDRDDD
>NZ_CP029191.1|WP_150185262.1|4253002_4253713_-|response-regulator
MAHLLVVEDDPQLRGALVRALRDKGHAVATAPSGMAGLDAAVTSRPDLVVLDLGLPDVDGAQVLRMLRAVSDVPVIVATARDDEPEMVTVLEAGADDYIVKPFGAAQLDARVKAVLRRLGVFETEEPLRVGGLSVDPASREVTLDEAAVDLTPREFDLLAYLARRPGQVVSRRELLAEVWQQPLGGADKTVDVHLSWLRRKLGETAQRPRYLHTVRTVGVKLAPPGEQEPCDQDPA
>NZ_CP029191.1|WP_150185261.1|4251620_4253003_-|HAMP-domain-containing-protein
MRRSLLLLTAATTALVLTALLVPLTLLTRSHAADRATAEATARAQWVAHALGPVLATADERETAEQTVESVNGNDLPSTSLILADGEVIGPRLGHGSAVTDPVRLARTGRAFTYEPGSGGRLVLVPVQGAKDGTAVVQVTLSEKQLYAGTLASWLVLAGIGVGLVLVGLLLADRLGARLVGATRRLARTADRLAAGDLTARAEPEGPPELRLIAGELNRLAARIDELLTAERENAADLAHRLRTPVAALRLDAETLRDPDEAHRIAADVSALERSVDDVIRKARRPLREAPRADLAAVARERTAFWAPLAEDQSRAVRTDTPDTEIPVPVPADELTAALDALIGNVLDHTPHGTAFSLTVRRAPDGRRAELTVADEGPGFPDPGAAPDRGTSGAGSTGLGLDIARRTAEEAGGTFETATATPQGSGARVTLTFPLPRPLPLTPPRAHPGGTPSGPPEPTC
>NZ_CP029191.1|WP_150185260.1|4250875_4251682_+|VTC-domain-containing-protein
MNPAVRAIGRAATAAHPIALDEVNARAELLARFDNSYLVPVEIFEDLAALLTDPRRSGGPFRALSIGGKRWFRYHSTYYDTPDLGTFHDHRQGRRLRYRIRERVYQDSGERQFEIKLKSGRGETVKHRQRLEGDDHALDGVRLGFLAGVLRGSYGIEAPDGLTTSLVTDYQRATFVADGQRVTCDAGLVVRDTVTGRSAAADSGLVLVETKTKGHLTEADRVLHRFGVRAADFTKYCGGYAAVRPELGINKWARAVRTAFPRGARAGA
>NZ_CP029191.1|WP_150185259.1|4250231_4250879_+|DUF4956-domain-containing-protein
MDSTLTLCAHLGLDLAAVALLTFGVFYPRHRRRELVPAYLALNVALFAIVAGLGTVGGDGGLALGFGLFGVLSIVRLRSDALQHQEVAYYFITLVLGLLCGLPALGLPVAALLAGVLLAVMYGADHPRLFARDRRTVVTLDSVHRDEDSLRAELARRLGEPLGWTVQEVDYVRDLMVLEVRFRQPEPSVTSRELTVRRRTTRSRTIAPSHPKETV
>NZ_CP029191.1|WP_150185258.1|4249448_4250054_-|glutamine-amidotransferase
MSLTSRKPVHLALYDTFADWETGHATAWLARFGYEIRTVAPTAEPVVSLGGLRVQPDLSLAELRPEDSSLLILPGADLWDTSDDLAPFARTARAFLDAGVPVGAICGATAGLAREGLLDDRTHTSGASMYLAATGYKGGERYAETDAVTDGDLITAGPTEPVAFAREIFGRLGDVLDAEKLDAWYRLFHDSDPAAYETLNS
>NZ_CP029191.1|WP_150185257.1|4248972_4249452_-|MarR-family-transcriptional-regulator
MSDDRQDLLSRTALTVFRLNGQFLTASEELAKPAGLTAAWWQVLGAVLRDPLPVAGIARAMGITRQSVQRVADLLVRKGLAEYVPNPAHRRAKLLRPTEEGRAAVARIEPGHADLASRLADALGETEFADTVRVLERLATVLDDVVDADAGASGPVTEP
>NZ_CP029191.1|WP_150185256.1|4247088_4248891_-|protein-kinase
MEKLVPGDPQRIGAYRLLARLGAGGMGHVYLARSERGRTVAVKLVRQELAEQEEFRNRFRQEVQAARQVGGAWTAPVLDADTEAAIPWLATGYVAGPSLQSVVSHDHGPLPERSVNILGAGLAHALKDIHAAGMVHRDLKPSNVLVTIDGPRVIDFGIARALETVTDGGLTRTGALVGSPGFMAPEQVRGDRITPACDVFCLGSVLAYAASGALPFGTANSGVHALMFRIAQEEPDLEGLPEGLAELIAACLRKEPGDRPSLDEVLERTGAADALGDDGHTLDPWLPGALVAQLGRHAVQLLDAEDPEDAGEEGAEGPKGVGKPQGATPPPPGKPGTAPLDHLPTMVSGQAPPTPPPGAPVYGYPQHVPAPQAAPAQHPAYGYPHQPPPPGFGSTPPYGPVPPPEPARRSGRSTAALIAVALIVALGAGGTVYAVMNGDSAEDKQRDDSANGNQASSAPRTPGPSTPGPESSSPEPSPSDSDDGAIPDKYLGTWSGGLDTDDGHSTRELTLQQGETGDTVLSVTADGPADGGGTYHCVFQGKLVSASGERLRIGPTEVIVGEPMTSCTPGDPSVITILGNGKLRRANTDGSGELTYDKGN
>NZ_CP029191.1|WP_150185255.1|4245504_4247013_-|phosphate-ABC-transporter-substrate-binding-protein
MDWLSAENTIAVLTAVLGLAATVGALWYERRVPRRKRIGYRVQLDTAIGDNVRTGGANARLGLFDETPEMSDATLVLLRVENDGSQAVSDADYSGRALHGLTAVFTGRTVRGLAVTAPSGDDHLMEHFTAAAGLRYEGSTLHIPRVPLNRGQHYKLLVLLTGGPVGGEVTLFGGIQAGDVQPNRSTTVDDKPPLLSRPAQLLTVLLTLSVVTFASIIVLREDDCPGSAITVSAHGSAAGVRELDDAGRKFAREKRRKGAPALLAFSDGPKSDGFPRLAETRVAVSVFALVLNDHVPVRNLTLPQVRRIYRGDVRNWKELGGPDLPVVLVSRGSSSGTRDTLQRRVLGGTFEIKASSNDCLGKDDPSVPVTRCELDSTDQVLDTVGRIPGAIGYGELRAASGLKGLHRLGLEGHAPSAEHLERSGYPYREIEYAYTYGLPPGDSLAAGFLAYARGTGLDVIRTHGHLPCATPEGLRVCAEGRPGGGAGTPLSPSSESSHSGGS
>NZ_CP029191.1|WP_150185254.1|4244224_4245508_+|adenylosuccinate-synthase
MPALVLLGAQWGDEGKGKATDLLGGSVDYVVRYQGGNNAGHTVVVGDQKYALHLLPSGILSPDCVPVIGNGVVVDPSVLLSELSGLNERGVDTSKLLISGNAHIITPYNVTVDKVGERFLGKRKIGTTGRGIGPTYADKINRTGIRVQDLYDESILKQKVEAALEQKNQLLTKVFNRRAIESEQIVEQLLEHGENIKQYVADTTLILNNALDDDKVVLFEGGQGTLLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKISRVIGILKAYTTRVGAGPFPTELFDADGEALRTIGGERGVTTGRDRRCGWFDAPIARYATRVNGLTDFFLTKLDVLTGWEQIPVCVAYEIDGKRVEELPYNQTDFHHAKPIYEMLPGWSEDITKAQTFSDLPKNAQGYVKALEEMSGAPISAIGVGPGRTETIEINSFV
>NZ_CP029191.1|WP_150185264.1|4254655_4256011_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTPQPNPQVGAAVKAADRAHVFHSWSAQELIDPPAIAGAEGAYFWDYDGNRYLDFTSGLVYTNIGYQHPKVVAAIQEQAATMTTFAPAFAVEARSEAARLIAERTPGDLDKIFFTNAGADAVEHATRMARLHTGRPKVLSAYRSYHGGTHQAINLTGDPRRWASDTGAAGVVRFWAPFLYRSRFYAETEQQECERALQHLEDTIVFEGPQTVAAIILETVPGTAGIMIPPPGYLAGVRELCDKYGIVFILDEVMAGFGRTGEWFAADLFDVTPDLLTFAKGVNSGYVPLGGVAISGKIAETFAKRPYPGGLTYSGHPLACAAAVATINVMAEEGIVEHAAKLGAQVVEPGLRALAERHPSVGEVRGVGMFWALELVKNRETREPLVPYNATGDANAPMAAFGAAAKKHGLWPFINMNRTHVVPACNITETEAKEGLAALDAALSAADEHTV
>NZ_CP029191.1|WP_150185265.1|4256147_4256843_+|GntR-family-transcriptional-regulator
MPGTDGPAVIRSTLRQQIADALRDEVLAGRLEPGQEFTVKEIAEQYGVSATPVREALVNLTAQGLLDADQHRGFRVHEHTLDDYRGMLEARGLIADGIFRDLMAHGARRDTADALFSVRRRGEEAARAACAGDLTVLIGYDLRFWRELSALFGNAHLSDFLHRLRLKSWVCAVTHLRRWSDINGGDLRGLLWSRHTELVDALVRNDPEAAHAIVREYNAHSLSLIERLAAA
>NZ_CP029191.1|WP_150185266.1|4256839_4259260_+|glycosyltransferase
MSADLGVDLSVVVPAYNEEQRLGPTLDALRDHLETAYRGAWELIVVDDGSTDRTAEIAAEASAADPRVQLVRGGRNRGKGHALRLGVLATYGRRVLVTDADLAAPIEELDHLDKALTDGHAAAIGSRARPGATIDTHQHRLRELLGRTGNFLIRSVAVPGIRDTQCGFKLFDGDRAREAFAASRLHGWGIDVEILQYFRRQGWPVAEVPVRWSHQEGSKVRPLDYVKVLAELTTLKARTVRRADVLVALLFLALSVTLYSSRWTAPAHRYIPDSLQDQNQWEWFFAVTADNVRHLNNPLFTTLQNVPDGVNLMANTVMLGLSVPLAPVTWLLGPAVALNVAMTGGLAATAVSWYALIRRRLVPHRGAAAVGAALAAFAPPMVSHANAHPNFIVLFMIPLIIERALRLCEGTRVVRDGVVLGLCTTYQIFLGEEPLLLAALGMLLFALAYAAVRRDVARAAWRPLARGLGIALAVTIPLVAYPLYWQFFGPQSYKSVLHGDNVGNSPLAFLSFAERSLAGSHETADHLAMNPTEQNAFYGWPLAVLAFAIVVRLWERTVVKALAFTVLAAALLSLGPKFRIPLTDLVLPGPWAALSGRPLFESVIESRVAMVCAPALGMLLALALVRLLRAPRRAHRFAGVAAVALALLPVFPAPLKAVDRVDVPPFIAQGTWRTYLGKGETLVPVPVPDPANAEGLHWQVAADLGFRIPGGYFNGPWGPDRIGIYGPSPRNTSTLLRDVRSSGRVPEVTPDWREAVRQDLEFWKAGLLVLAPQQNDGQLRATVDALLGRPGKWVDGVWIWDLRKGS
>NZ_CP029191.1|WP_150185267.1|4259323_4259974_+|hypothetical-protein
MACDLWLVPLVDVLCHSADNPFAEELAVYDKALHEAGLPPVPVFAYMPGLSGDVAPVAGFDYDALHFLRRAYLLQICGLEVTPVDELGGDYEQLLEMFDATAQQSHLVWHYDHAGAYVPVDFPVPLSNEELLAGGGPLGSSQALLRELEYVAPSIGIDPANPPLAPAPPSAPTSLEEPAAPPPPDESPFARERHVWLGLHAAATRSLAQGSMIIYS
>NZ_CP029191.1|WP_150188329.1|4260106_4260721_+|deaminase
MVSSDGFGTGEGQSLERPFGHADPREMSAWAGATASWPNRTDPGGSRGLDDYFTRDFSHNIGAEIMGRNKFGPQRGPWQDHEWRGWWGDEPPFHTPVFVMTHHERPSFTLSDTTFHFVAGDPATVLEQAKEAAQGKDVRLGGGPTIVREFLEADLVDTLHVAVSPMKIGAGVRLWNSPEELTDRYHLEVVPSPSGVTHHLFWRK
>NZ_CP029191.1|WP_150185268.1|4260737_4261553_-|SLATT-domain-containing-protein
MSQPEMQPEGVPPEGQGAGTGAGPGKESGAAPGAGAGSGARVGDLTGRAFPLGDWGDPACRLDELYRWVERGALNTADWYLTDRGRKRRAARLLRVGAALGAVGAGVLPLLDLAGVGAGNAGAAGGLAGWGFVSLLLGVACVGCDRFFGLTSGWMRDVATAQAVQRRLQVLQFDWASESVREVLGPTEGTAGEAAERCLGVLRKFTDDVTELVRAETSDWMVEFRAGPVPLAMQAMVPGGAPREASAAPGRFPLPPGARPNMPRQRPPEPR
>NZ_CP029191.1|WP_150185269.1|4261795_4262137_+|YbaB/EbfC-family-nucleoid-associated-protein
MIPGGGQPNMQQLLQQAQKMQQDLAAAQKELARTEVEGQAGGGLVKATVNGSGELRGLVIDPKAVDPEDTETLADLVVAAVQAANENAQALQQQKLGPLAQGLGGGGIPGLPF
>NZ_CP029191.1|WP_055569715.1|4262209_4262809_+|recombination-protein-RecR
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCATCGNVAQEELCNICRDPRRDPSVICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIKPMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV
>NZ_CP029191.1|WP_150185270.1|4262801_4263461_+|DUF5063-domain-containing-protein
MSDATLNTVTDNPDDFAVQISDQIESFIVSVREVAKGVEPDSAVPFLLLEVSQLLLAGGRLGAHEDIVPEERYEPDLGPEQDVDDLRERLATLLDPIDVYSEVFDPYEPRKAPVPCRISDDLADVVADLCHGLAHYRAGRTTEALWWWQFSYFSNWGSTASGALRALQSLVAHVRLNQPLDDLDGLDTDEDLQADGLEEEAGRVMAEEIAGPLGLRTIK
>NZ_CP029191.1|WP_150185271.1|4263557_4263941_+|addiction-module-toxin-RelE
MNWQINLHPSVEKWLLVLAEEDAVSADLVEAAVDMLAEHGPALGRPLVDRITGSRTHNLKELRPGSSGRTEVRILFVFDPKRQAILLVGGDKAGRWRDWYHEAIPVAEARYGEYLASRDGAGESGGV

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Crispr_ID: NZ_CP029191_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_11

4410032-4410130

Orphan

Consensus_repeat	Method
CGACCCCGCCGCTCCGCGGCGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_11

>merge|NZ_CP029191|11|4410032-4410130|CRISPRCasFinder
CGACCCCGCCGCTCCGCGGCGGATCACACCCACCCCCCCCGTTCACCCCGCGACGCCCCGTGCGGGTAGGAGCACCGACCCCGCCGCTTCGCGGCGGAT

>NZ_CP029191|11|11|4410032-4410130|CRISPRCasFinder
CGACCCCGCCGCTCCGCGGCGGAT	CACACCCACCCCCCCCGTTCACCCCGCGACGCCCCGTGCGGGTAGGAGCAC
CGACCCCGCCGCTTCGCGGCGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150185378.1\|4407286_4408153_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227300
NZ_CP029191.1\|WP_150185385.1\|4419122_4419320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185375.1\|4403648_4404473_-\|HAD-IB-family-hydrolase	unknown	unknown	gnl\|CDD\|273654
NZ_CP029191.1\|WP_150185384.1\|4417476_4418991_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225443
NZ_CP029191.1\|WP_150185380.1\|4409642_4410026_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NZ_CP029191.1\|WP_150185377.1\|4406114_4407284_+\|TadA-family-conjugal-transfer-associated-ATPase	unknown	unknown	gnl\|CDD\|200328
NZ_CP029191.1\|WP_150185379.1\|4409223_4409646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377921
NZ_CP029191.1\|WP_150185386.1\|4419694_4422532_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_CP029191.1\|WP_150185374.1\|4402437_4403253_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|225718
NZ_CP029191.1\|WP_150188348.1\|4408167_4408938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP029191.1\|WP_150185383.1\|4416767_4417352_+\|small-secreted-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185373.1\|4401355_4402336_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|349754
NZ_CP029191.1\|WP_150188349.1\|4409015_4409237_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NZ_CP029191.1\|WP_150185387.1\|4422624_4425834_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP029191.1\|WP_150185381.1\|4413367_4413808_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379279
NZ_CP029191.1\|WP_150185382.1\|4414125_4416528_+\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|234827
NZ_CP029191.1\|WP_150185388.1\|4425941_4427147_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_CP029191.1\|WP_003975386.1\|4412907_4413249_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132914
NZ_CP029191.1\|WP_150185376.1\|4405005_4406118_+\|septum-formation-initiator	unknown	unknown	gnl\|CDD\|274798
NZ_CP029191.1\|WP_150188350.1\|4410373_4412800_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|274800

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150185378.1\|4407286_4408153_+\|hypothetical-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.36061e-18
NZ_CP029191.1\|WP_150185375.1\|4403648_4404473_-\|HAD-IB-family-hydrolase	gnl\|CDD\|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI\|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI\|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	6.90039e-63
NZ_CP029191.1\|WP_150185384.1\|4417476_4418991_+\|methyltransferase	gnl\|CDD\|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	1.2432e-18
NZ_CP029191.1\|WP_150185380.1\|4409642_4410026_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	7.25865e-12
NZ_CP029191.1\|WP_150185377.1\|4406114_4407284_+\|TadA-family-conjugal-transfer-associated-ATPase	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	3.69174e-170
NZ_CP029191.1\|WP_150185379.1\|4409223_4409646_+\|hypothetical-protein	gnl\|CDD\|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	0.000788459
NZ_CP029191.1\|WP_150185386.1\|4419694_4422532_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP029191.1\|WP_150185374.1\|4402437_4403253_+\|oxidoreductase	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	0.000284819
NZ_CP029191.1\|WP_150188348.1\|4408167_4408938_+\|hypothetical-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	4.21097e-10
NZ_CP029191.1\|WP_150185373.1\|4401355_4402336_-\|ATP-binding-protein	gnl\|CDD\|349754	cd02034, CooC1, accessory protein CooC1. The accessory protein CooC1, a nickel-binding ATPase, participates in the incorporation of nickel into the complex active site ([Ni-4Fe-4S]) cluster of Ni,Fe-dependent carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.	7.28339e-34
NZ_CP029191.1\|WP_150188349.1\|4409015_4409237_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	1.19919e-20
NZ_CP029191.1\|WP_150185387.1\|4422624_4425834_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.76082e-80
NZ_CP029191.1\|WP_150185381.1\|4413367_4413808_+\|ATP-binding-protein	gnl\|CDD\|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	5.64728e-30
NZ_CP029191.1\|WP_150185382.1\|4414125_4416528_+\|sodium-translocating-pyrophosphatase	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
NZ_CP029191.1\|WP_150185388.1\|4425941_4427147_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	0
NZ_CP029191.1\|WP_003975386.1\|4412907_4413249_+\|STAS-domain-containing-protein	gnl\|CDD\|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.32955e-33
NZ_CP029191.1\|WP_150185376.1\|4405005_4406118_+\|septum-formation-initiator	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	1.36397e-76
NZ_CP029191.1\|WP_150188350.1\|4410373_4412800_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0

>NZ_CP029191.1|WP_150185380.1|4409642_4410026_+|flp-pilus-assembly-TadE/G-like-family-protein
MRVTWRGAGRDRGAATVWVVVVMAVLGVICGAVLAMTQVVVARHRAGGAADLAALAAADRWAAGSDEACAGAGRVAAAQGARVVRCGVRGETSAVSVSSSAGPFTVTVRARAGPVMSPRSPLRRPAG
>NZ_CP029191.1|WP_150185379.1|4409223_4409646_+|hypothetical-protein
MCRSEAGLQGRRWHARFRVRFPRPSDRGFVTAEAAVVLPTLVLFTMALIWTLLAASAQIQCVDAARAGARAAARQDPDDVAMAAARQAAPRGASVSVRRDADLVRVEVVADAPGPEVLGLGLRLRSEAVALAEESVGVAV
>NZ_CP029191.1|WP_150188349.1|4409015_4409237_+|DUF4244-domain-containing-protein
MRRRMMRRLSVLSPRTWRSLKPPGSDAGMVTSEYAMGLIAAVGFAGLLYKVVTSGQVKAALQGLVERALDVPF
>NZ_CP029191.1|WP_150188348.1|4408167_4408938_+|hypothetical-protein
MGVTVWVAAAALWLTLTALAARRERAQRRRAERVLPGPRPPEGGARKRPRPNRWAQQRHWLTPAGTASAAYVLVGGVPGALAAAVVGYLAWRNVRQKRTPSLDRREETHEAARQLPLAADLLAACIASGAGPLAAAHAVGESLRGPIGARLSRGAAEVRLGGEPRAAWRQLSEIPGAAPLARLLERAGDSGAPTADPVARLAADARADRARAATAEARKAAVLMTAPVGLCFLPAFVAVGVLPVVIGLAEGLLSTG
>NZ_CP029191.1|WP_150185378.1|4407286_4408153_+|hypothetical-protein
MATSTWTAALAMCAGAAVWLLTRRNHESHRLRKLLTPIAPQPSSNPRWPGLIATARARLRPEWWCLAAGATVALLGESVVPLAAGAAGVPLAAGVRRARDARRKRERRRAAVIAWLGELAAEVRAGRQPGDALRLTLQDPVASDAGPGAARSAVLAAARFGGDVPGALRSAAREPGAEGLLGLAACWRVAVDRGAGLAAGLDRLEAALRSERDQRADLRAQLAGARSTAVMLAALPVLGLLMGSALGAEPLRVLLHTGPGLTCLAVGAVLEGAGAWWALRIVRRAEER
>NZ_CP029191.1|WP_150185377.1|4406114_4407284_+|TadA-family-conjugal-transfer-associated-ATPase
MSAVVGARMLDGVRQWLAESGTEPTPARVAEALRAQGRVLGDTEILGAAEQLRSELVGAGPLEPLLADASVTDVLVSAPDKVWVDRGGGLELTDITFRDAAALRRLAQRLAAVAGRRLDDARPWVDARLPDGTRLHAVLPPVAVGSTCLSLRVVRPKAFTLTELVEAGTIPPNGDAILRSLLEARLSFLISGGTGTGKTTLLSALLSLVGPKERIVLAEDSAELKPDHPHVVRLETRPANQEGAGLVGLDDLVRQALRMRPDRLVVGEVRGAEVVHLLAALNTGHEGGCGTVHANAAGDVPARLEALGTTAGLDRAALHSQLAAALSMVIHLVRDRTGRRRMAEVHVLERAESGLVVTVPALRWGERAFTRERGWNRLNTLLAGGGEGG
>NZ_CP029191.1|WP_150185376.1|4405005_4406118_+|septum-formation-initiator
MGGVFSSDVAAQAEGRPGGPLIVTEDVELLDDLLRLCAAAGALPEVHHGGPERRGSWDAAPLVLVGDDAADRVRGAVRRRGVVLVGRDQDDPGVWQRAVEIGADHVLVLPDGEQWLVDRIADVAEGVGRPAVTVGVIGGRGGAGASTVACALAVTAAREGRRTMLVDADPLGGGLDVVLGAEHAEGLRWPAFAASRGRVGGGALEESLPHMHALRVLSWDRGEAVAVAPEAVRAVVAAARRRGGAVVVDLPRRVDEAVAEAMAQVDLGLLVVPAELRAVAGARRVASAAGMALRDLRVVVARGPASGGLDAEEVAGLLGLPLAGEVPWEAGLAAQQASGTPPGGAARGPLARFCSAFWGRVPADAVGGGV
>NZ_CP029191.1|WP_150185375.1|4403648_4404473_-|HAD-IB-family-hydrolase
MLGLVENHSLPRTAAFFDLDKTVIAKSSTLTFSKSFYQGGLINRRAVLRTAYAQFVFLAGGADHDQMERMRSYLSALCRGWNVEQVKEIVAETLHDLIDPIIYDEAASLIEEHHTAGRDVVIVSTSGAEVVEPIGELLGADRVVATRMVVGDDGCFTGEVEYYAYGPTKAEAVKELAQSEGYDLDRCYAYSDSATDVPMLEAVGHPFAVNPDRALRREALTRAWPILDFHRPVRLKQRIPAPPRPALVAAAAVGAAAATAGLVWFASRRRATAG
>NZ_CP029191.1|WP_150185374.1|4402437_4403253_+|oxidoreductase
MSTTADPLAALGALPGVADSVDSVRKAVDRVYGHRVMRRRSNEITSEAALRGARGSAALSGADWALEEVRRRTDFSGDGEERTVGAALRLTAEAGQLLSIWRQSPLRVLARLHLVAAADSAEGAGRPRLAGEPVDEPLIELPVPDADEVAGRLEGLSQLIIAGSAAPALVTAAVVHGELASLRPFGSHNGLVARAAERIVLVGSGLDPKSVCPAEAGYGELGRAAYVAALDGYASGRPEGMAAWIAHCGKAVELGVRESTAVCEALQRGAA
>NZ_CP029191.1|WP_150185373.1|4401355_4402336_-|ATP-binding-protein
MKIAFVGKGGSGKTTLSSLFIRHLASTGAPVIAVDADINQHLGPALGLDEAEAAELPALGARLPLIKDYLRGSNPRIASADTMIKTTPPGEGSRLLRVREDNPVFDACARIVELDDDTVRLMVTGQFTEADLGVACYHSKTGAVELCLNHLVDGRDEYAVVDMTAGSDSFASGMFTRFDMTFLVAEPTKKGISVYRQYKEYARDFGVSLAVVGNKVQGQDDIDFLREQVGDDLLVTVGHSDWVRAMEKGRPPRFELLEEENRSSLRALQAAVDASYERRDWERYTSQMVHFHLKNAQSWGNERTGADLAAQVDPAFVLRERMTATA
>NZ_CP029191.1|WP_150188350.1|4410373_4412800_-|DEAD/DEAH-box-helicase
MHDAFGPLSIPPVTHSMPMAKISPTGGPSAGAPARTSPRTVLDRLTAGPSRASRVTHTEHLPPREARYAVWPDRIRPEVISAVQAAGIEHPWAHQALAAEHALDGESVVVATGTASGKSLAYLTPVLSALLDGSEAPNGRGTTALYLAPTKALAADQRRAVRELAAPLGNAVRPAVYDGDTPFEEREWVRQYANYVLTNPDMLHRGILPSHPRWSSFLRSLRYVVIDECHTYRGVFGSHVAQVLRRLRRLCARYGSEPVFLLASATCADPSASAERLTGLPVKEVADDASPRGDLVFALWEPPLTELHGEKGAPVRRTATAETADLLTDLTVQGVRSVAFVRSRRGAELISVIAQERLAEVDRSLPRRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDVSGLDAVVIAGYPGTRASLWQQAGRAGRSAQGALAVLVARDDPLDTYLVHHPEALFQQPVECTVLDPDNPYVLAPHLCAAASELPLTEEDLALFGPTTEELLPQLEAAKLLRRRTKAWHWTRRERAADLTDIRGEGGKPVQIVEEGTGRLLGTVDASAAHTSVHEGAVHLHQGRTYLVRHLDLEDSVALVEEAAPPYSTTARDTTAISILETDTEIPWGAGRLCYGSVEVTNQVVSFLRRRLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARITPEILGGALHAAEHASIGMLPLFATCDRWDIGGVSVPLHPDTLLPTVFVYDGHPGGAGFAERAFHTAREWLTATRQAIASCECEAGCPSCIQSPKCGNGNDPLHKRGAVRLLSVLLREAGGA
>NZ_CP029191.1|WP_003975386.1|4412907_4413249_+|STAS-domain-containing-protein
MDLSLSTRTVGDRTVVEVGGEIDVYTAPKLREQLVELVNDGSFHLVVDMEGVDFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTSVEEAVAATD
>NZ_CP029191.1|WP_150185381.1|4413367_4413808_+|ATP-binding-protein
MATVELRFSALPEHVRTARLVAAAVARRAGVDEAVLDEVRLAVGEACTRAVGLHQSSGVTAPVRVALIEDEKQFSIEVGDEAPRAAPGDRAPGARLDDGEETDAEGEDEMGLAVISGLVDDVEVTAGEAGGLIRMRWPTTPAPLVP
>NZ_CP029191.1|WP_150185382.1|4414125_4416528_+|sodium-translocating-pyrophosphatase
MAGLSTPHQFDHPTTFAAAVLTDDNRLIVMVIAAVALAALIVAGVLVRQVLAAGEGTDSMKKIAAAVQEGANAYLGRQLRTLGVFAVVVFFLLMLLPADDWNQRAGRSIFFLVGAAFSATTGYIGMWLAVRSNVRVAAAAREATPAEGEPEKDLTAVSHKAMKIAFRTGGVVGMFTVGLGLLGASCVVLVYAADAPKVLEGFGLGAALIAMFMRVGGGIFTKAADVGADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGKVAFGDSGLAFPLLVPAIGVVTAMIGIFAVAPRRSDRSGMSAINRGFFISAVISLALVAVAVFVYLPSTYADLDGVTDAAIKGHDGDPRVLALVAVAIGIVMAALIQQLTGYFTETTRRPVRDIGKTSLTGPATVVLAGISVGLESAVYTALLIGLGVYGAFLLGGTSIMLALFAVALAGTGLLTTVGVIVAMDTFGPVSDNAQGIAEMSGDVEGAGAQVLTDLDAVGNTTKAITKGIAIATAVLAASALFGSYRDAIAEAAKDVGEKLGDGAPMNLVMDISQPNNLVGLILGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFREKPGIMDYTEQPEYGRVVDICTKDALRELATPGLLAVLTPIAVGFSLGVGALGSFLAGAIGTGTLMAVFLANSGGAWDNAKKLVEDGHHGGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAPAVVKFSYGDDASVGMRALIAALSIAVIIGAVYVSKRRGIAVGDEGNNERVAKPADPAVVS
>NZ_CP029191.1|WP_150185383.1|4416767_4417352_+|small-secreted-protein
MEGTNPVNKKLAAALSGGAVLVLALSGCSDDGNKKLDDWAKKVCDSVQPQSKKIAAANAAIQKETSDNSSPGDVQKTDSKAFKDMSDAYKSMGDAVKNAGAPPVDDGKKKTDDAVKELNGISKSYGDLQKQVDGLDTKNQADFADGLKDVAGELDKLSKSGNEALEKLQEGDVGKAMRKQDSCKSASATPSAKS
>NZ_CP029191.1|WP_150185384.1|4417476_4418991_+|methyltransferase
MSNATLPLPSSDRADVAAALRDALLAADFTADGLLELLGAPAYTALARSETVPALRATRGDGALPALVRLFLLQESVPHARVADVLPVDVLLESDWLAERDGELWATVDVRPYGGPSGEDWFIVSDLGCAVGGAGGIGKHEEGVVLGVGGASTTLAGITVRLPVASALDLGTGSGIQALHAAQHATRVTATDLNPRALRFTRLTLALSGAPEADLREGSLFEPVADETYDLIVSNPPFVISPGARLTYRDGGMGGDDLCRSLVQEAGERLNEGGYAHFLANWQHVEGEEWQDRLRSWVPRDCDAWIVQREVQDITQYAELWLRDAGDHRTDSAEYAARYDAWLDEFEARGTRAVGFGWITLRKTAAAEPSVTVEEWPHPVEQPLGDTVREFFERQEYLRAHDDAALLAAHFKLADEVVQEQVGLPGAEDPEHVVLRQNRGMRRATKVDTVGAGFAGVCDGSLSAGRILDAIAQLVGEDPVLLRDRTPAQIRLLVQQGFLLPASE
>NZ_CP029191.1|WP_150185385.1|4419122_4419320_+|hypothetical-protein
MESGPAIFAGTVFALFGAGLLMWTGVRAAHRAPVAQGVNPVASVTFATLAGAAALLLGVWCFTRL
>NZ_CP029191.1|WP_150185386.1|4419694_4422532_+|type-I-DNA-topoisomerase
MSPTSETAQGGRRLVIVESPAKAKTIKSYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGEVRRLGVDVEHDFQPIYVVNADKKAQVKKLKDLLKESDELFLATDEDREGEAIAWHLLEVLKPKVPVHRMVFHEITKDAIRSAVANPRELNKRMVDAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFGTGRAGDASDPSQLVARLTTVDGKRVAQGRDFNSVGQLKANSAGTLHLDEANARALAAALRETAFSVRSVESKPYRRSPYAPFRTTTMQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSDTAVAAARSQVTQLYGSDYLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQMKDATGNSVTVKIGGRASDGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQVNEGDALSADEISVDGHATKPPARYTEASLVKELEEREIGRPSTYASILGTILDRGYVFKKGTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQAVPWLRRFYFGEGEGSGGAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNDIVLRVGRYGPYIERGERDAENHQRADVPDDLAPDELTVEYAEELLAKPSGDFELGADPETGRQIIAKDGRYGPYVTEVLPEGTPKTGKNAVKPRTASLFKTMSLDTVTLEDALKLMSLPRVVGTDAEGVEITAQNGRYGPYLKKGTDSRSIDTEEQLFTITLEEALEIYSKPKQRGRAAAKPPLKELGEDPVSGKPVVVKDGRFGAYVTDGETNATLRAADSVEDITPERGYELLAEKRAKGPAKKTAKKAAKKAPAKKAPAKKTAAKKTAAKKTTAAKKTATKKTAAKKTAASKAAVSEE
>NZ_CP029191.1|WP_150185387.1|4422624_4425834_+|dTMP-kinase
MTRAEQPTAGNPAPDDALVADSRERAVRALLRVPQLKRLWSAHLVGSVGDALALLVLVILALQSAIAEAAFGGGYRGVALAVTAVFGARVLATLLFGAVLLGPLTSLTSPGGPLDRRWTMVGADGVRAALLVVAPLWIDWTPDNALAMILVTSFVVGVAERFWTVAKESAAPALLPAPPLEGATVRPLPDHMDALRRLSLRTGFLALPLAAAALVAITLVGNLLGAGLDWFELHQAGLASFVAAGLFAASLSILYFLELPRTQTPRARSPLEGLRRPRTGTGTDKGRTGAIPLFVTACAAVAGAVAAAVAVAVLHAKDLGGGPVTYGLIVLALTGGTAVGIRTAPFLLPTLSRRRLLALAIALTGIALLVAGLVPDVTTVLLLLALSGVSAGVAANIGHALLDQEVEDYRRARTTEHLHAVVRLTLALGALLAPVVAALIGPHRMVNGKFVFDHGGAAFTLMLVGALLLPVAALVLAKADDRQGVPLRHDLLDALRGGDDPAQAPCATGFFIALEGGDGAGKSTQAEALAEWIRAKGHEVVVTREPGATPVGKRLRSILLDVSSAGLSHRSEALLYAADRAEHVDTVVRPALERGAVVISDRYIDSSVAYQGAGRDLSPTEIARINRWATGGLVPNLTCLLDVSPEAARERFTEAPDRLESEPAEFHARVRSGFLTLAAADLGRYLIVDASQEPEAVTTVIRHRLDLVLPLSEAEVKAQEEARKAAEEEARRKAEEEAARKAEEERLERERQEQLAKLRAEEEERKRRELEEAQRREAERQAEEARKRAEEARRKAEEEKARLLAEEKLRAAEEARRKREAEEEARLRAEAEERRLEKQRKAEEALLRAEEARRLAAASAAAATAAAAPAAPVRKAPAAAPAAPEKKGPDPEKKAPASEKKAPAPAQKAPATPSVPDNETTVPTPVVKPPAGAADETAVLPAIGTDAGAEGPSAEDTAVLPRATEPAGAADETAVLPAVGQDKVPPGYFRDERPAAEPASSLDGANDRTRELPQVDERGVPRHGASDWAEETPLDDLPSLADELLGSHEDEDEDDRDGGRRGRRGRRDR
>NZ_CP029191.1|WP_150185388.1|4425941_4427147_+|DNA-polymerase-III-subunit-delta'
MSVWDDLVGQERVSEQLGAAARDADALVTAAGTDTPPPESSKMTHAWLFTGPPGSGRATAARAFAAALQCTSPDRALGGAPGCGFCDGCHTALIGTHADVEVVRTDMLSIGVKETRELVRRAQLSPAVGRWQVIVLEDADRLTEGAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLTLRTPPVDAVADMLVRRDGIEPDVAAAAARATQGHIDRARRLATDPRARERRNAVLKLPLRVEEIGGCLKAAQELIDTATEDAKQVVEEVDVKETDELKAALGAAQGGRMPRGTAGAMKELEDKQKRRRTRTQRDSLDLALTDLTALYRDVLALQLGSQVAIANTEVQDMLQRLALAAAPEATLRRIEAISACRTALDRNVAPLLAVEAMTVALRAG

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Crispr_ID: NZ_CP029191_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_12

4988383-4988471

Orphan

Consensus_repeat	Method
GGGGGTCAGCCCGAGCGGGTCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_12

>merge|NZ_CP029191|12|4988383-4988471|CRISPRCasFinder
GGGGGTCAGCCCGAGCGGGTCGGACCACGTGTGCGGGTTGTGTACGTAGGTGGCGTGGTTCGGGTCGGGGGTGAGCCCGAGCGGGTCGG

>NZ_CP029191|12|12|4988383-4988471|CRISPRCasFinder
GGGGGTCAGCCCGAGCGGGTCGG	ACCACGTGTGCGGGTTGTGTACGTAGGTGGCGTGGTTCGGGTC
GGGGGTGAGCCCGAGCGGGTCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150171318.1\|4995252_4995747_-\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|239580
NZ_CP029191.1\|WP_150185852.1\|4999460_5000006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150188401.1\|5000872_5001271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185839.1\|4980366_4981941_-\|DUF5136-domain-containing-protein	unknown	unknown	gnl\|CDD\|224600
NZ_CP029191.1\|WP_150185840.1\|4981983_4983273_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277331
NZ_CP029191.1\|WP_150185842.1\|4983695_4985048_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP029191.1\|WP_150185851.1\|4998818_4999340_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185845.1\|4987628_4987973_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375655
NZ_CP029191.1\|WP_150185850.1\|4996285_4996864_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|184333
NZ_CP029191.1\|WP_150185849.1\|4995755_4996136_-\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|239581
NZ_CP029191.1\|WP_150188398.1\|4985185_4985731_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029191.1\|WP_150185841.1\|4983427_4983829_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|340413
NZ_CP029191.1\|WP_150185843.1\|4985750_4986161_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP029191.1\|WP_150185844.1\|4986261_4987173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150188400.1\|5000035_5000398_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150188397.1\|4979033_4979489_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP029191.1\|WP_150185848.1\|4993481_4995236_-\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236185
NZ_CP029191.1\|WP_150185838.1\|4979476_4980376_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP029191.1\|WP_150188399.1\|4997148_4998702_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119334
NZ_CP029191.1\|WP_150185847.1\|4992711_4993482_-\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150171318.1\|4995252_4995747_-\|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl\|CDD\|239580	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	8.96219e-46
NZ_CP029191.1\|WP_150185839.1\|4980366_4981941_-\|DUF5136-domain-containing-protein	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.65203e-46
NZ_CP029191.1\|WP_150185840.1\|4981983_4983273_+\|metallophosphoesterase	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.08321e-73
NZ_CP029191.1\|WP_150185842.1\|4983695_4985048_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.96968e-55
NZ_CP029191.1\|WP_150185845.1\|4987628_4987973_-\|hypothetical-protein	gnl\|CDD\|375655	pfam18228, CdiI_N, CdiI N-terminal domain. This is the N-terminal domain of Contact-dependent growth inhibition immunity (CdiI) proteins present in Enterobacter cloacae. CdiI proteins neutralize CdiA-CT toxins to protect toxin-producing cells from auto-inhibition. Structural homology searches reveal that Enterobacter cloacae's CdiI is most similar to the Whirly family of single-stranded DNA-binding protein.	1.57621e-51
NZ_CP029191.1\|WP_150188399.1\|4997148_4998702_+\|family-20-glycosylhydrolase	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	4.28807e-90
NZ_CP029191.1\|WP_150185849.1\|4995755_4996136_-\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|239581	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	9.56511e-41
NZ_CP029191.1\|WP_150188398.1\|4985185_4985731_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.80765e-18
NZ_CP029191.1\|WP_150185841.1\|4983427_4983829_+\|ATP-binding-protein	gnl\|CDD\|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	5.77313e-17
NZ_CP029191.1\|WP_150185843.1\|4985750_4986161_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	3.26374e-05
NZ_CP029191.1\|WP_150185850.1\|4996285_4996864_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|184333	PRK13798, PRK13798, putative OHCU decarboxylase; Provisional.	1.68231e-49
NZ_CP029191.1\|WP_150188397.1\|4979033_4979489_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.42822e-19
NZ_CP029191.1\|WP_150185848.1\|4993481_4995236_-\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP029191.1\|WP_150185838.1\|4979476_4980376_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	2.4789e-36
NZ_CP029191.1\|WP_150185847.1\|4992711_4993482_-\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	5.23753e-146

>NZ_CP029191.1|WP_150185845.1|4987628_4987973_-|hypothetical-protein
MDLSYWSAGDYRDSWVRALRRLDAAQDEVDSCLITSITDPATANFVFGWPLYRRGTDVYVQNAVIFLDELAEAFRPAEPWLSVEPRGTVDEDGNEISEWRTTIDAVRAFLSTCQ
>NZ_CP029191.1|WP_150185844.1|4986261_4987173_-|hypothetical-protein
MTATVLALGAWPATAHAFGEDEDHPPTGPSGGASGNTLTAGVGTSITVKQVNGGKGGDLVHVTPSLSWGEELMVNHYEKGEDQSDGAEGYKDFNIGKDGKFWRGVMNPDVENTFEARQCETNLFWQDAREIPGIKNAPTPKILAGYAYNKIKVPDTKVEMKPVGESTVNLPTWVWLDKGKFEPVKVRAELPGTGLWAETTAKPVSLHLDPGTPDAETFPADGECAVNDDGSIGTPYRKGSAKEDPPCGIKYLRATGGDPYRMKASLTWEITWTGNGGAGGDLPDGTFEGTQDVDVQEIQSINR
>NZ_CP029191.1|WP_150185843.1|4985750_4986161_-|VOC-family-protein
MSDNQPVGLLGFDNVLFPVGDLGEAVGFYERAGFPVEARIDELGLAILKVGKETPGLLLRVEDGIVPRTPPWPSPRIWLEVPDARAKGQALAAAGIPLLNEPFSVATGWTVEITDAWGNVVGFTDYLKRPELARTA
>NZ_CP029191.1|WP_150188398.1|4985185_4985731_+|MarR-family-transcriptional-regulator
MTHGPQGGPAADGTPRDWTDGHVERWLPVLPTLDPDIEGAVTRMEKLTVHLRRVREQSLVDFDLERHEFDTLHKLAGRGGAASPSELAADLDLAPASVTGRLDGLERRGLVRRTPSRRDRRRVDVELTESGTTAWEGAMEILGREEERLLHVLPAEERRRLSDMLRRIMTVAEKGGDAGWR
>NZ_CP029191.1|WP_150185842.1|4983695_4985048_-|MFS-transporter
MPLPRPSSYPLLRNRPFRLLLTGRTLSLVGDAVIPAALALAVLRATGSSSALALVLGCAMGPRLLLLPLGGVVADRFDPRTVALVTDLARCGTQLFVGVELLGGSPGLWHIAVAEAVGGAASAFAMPTLPSLITGTVAPQDRHGANALFGVVRSGTVLGGPALAGLLIATAGPGWAFVLDAVSFAVSACLLSAVRLPYAHSGAAAPSRPSKSLRDDLVEGWQEVRSRDWYWTSLVAHAAWNGAAAVLMTLGPALAVQELGGEGVWIWFLQVGAVGLLLGSLLAGKARPRRPVLVANLGLATYALPLALLAAGAPAPAVIAAYGLAQAGLGFLSPVWETSVQAAIPAPVLARVTSYDWLLSMAAMPLGYVLAPLAASVWGAGPPLWVAAAVVGAACAGTAAVPGVRRFTLPAPAPTPSSRSPRDDTPPTPPPSRRADADRGRVRPPTRRVS
>NZ_CP029191.1|WP_150185841.1|4983427_4983829_+|ATP-binding-protein
MLRREAFRLPPHPASVPLARTRVYDHLSAWGHTADDGALDDTVLLVSELATNAIVHGYVAEGEFEVAVTVLADGACFIEVSDESPSEPEIRKPGAWEDEHGRGLRLLDATAEAWGVCRRGGCGKTVWALVRGA
>NZ_CP029191.1|WP_150185840.1|4981983_4983273_+|metallophosphoesterase
MVALMVLVGVAVLAAFAALHWYAWRRLVRDTTAGPGFARRAGTVVFVAAPLTMFAALVAERTGAPFLLQRVLAWPGFLWMALSLYLLLALIVGELARPLLRRWVERKERVEAAPEGEKAAPAPAPVTAPEPAPVTAPAPAPVTAPEPAPEKKITAPSRRLFVSRVVGGTAAAVAAGTVGYGTYGVLRGPKVKRVTVPLAKLPRAAHGFRIAVVSDIHLGPILGRGFTQRVVDTVNATQPDLIAVVGDLVDGSVEHLAPAAAPLAGMRARHGAYFVTGNHEYFSGAEQWVDHVRELGLHPLRNARTELPGFDLAGVDDVAGEDEGKGPDFAEALGDRDRSRASVLLAHQPVVIHDAVEHGVDLQLSGHTHGGQLWPGNLIADLANPTLAGLERYGDTQLYVTRGAGAWGPPVRVGAPSDITVVELASRRA
>NZ_CP029191.1|WP_150185839.1|4980366_4981941_-|DUF5136-domain-containing-protein
MVPTTVPKTKETTASVRCTQKYPVGLSASSKASPLPSFHRFLTKVIQMNQLHTPKASRNQETGRLSFIRSVSRASLPHRRRGGDEGTQWTSEPTRPAPPCTFSSVPAVKKTAILVASAALLTMSTAAPALADGKPGGDDNQPKPPAKMSTVGGARLGEAGTQVQLKPGAPVLPKELTGRSWIVSDAETGEVMASHNAHWRLPPASTLKMLFADTVLPKFPKSQKHKVTLADLAGIGAGSSMVGIKENETYSVHDLWLGVFLKSGNDAVHVLSAMNEGVPRTVKDMQKHAEELQALDTHVVSPDGYDAKGQVSSAYDLSLFARSGLQKKDFREYCATATAQFPGETKKVEKGKDKGKTKRGTFEIQNTNRLLTGAPGISAYKGIAGVKNGYTSNAGNTFTGVAERNGKVLLVTVMNPSSGEAHAVYKETASLFDWGFKAAGKVDPVGQLVAPKGAAGGAGKGAPGSGGEGTDTEKAAHSSDSGGSGMGTALAITGGVLVVLAGGAFVIRRRLPLPGQAGRRTSQD
>NZ_CP029191.1|WP_150185838.1|4979476_4980376_+|YihY/virulence-factor-BrkB-family-protein
MDWLKKLPGIGPLVAKGMRTHAWQSYERLDEVHWTRLAAAMTFISFLALFPLLTVAAAIAAATLSKKQQDTLESKISEQVPGISDQLNLDALVENAGTVGLVAGALLLFTGIGWVGSMRECLRAVWELPDEEENPVLRKVKDAGVLFGLGGAGLASFAASALASTAVGRTADLFGIDERGWGTVLLQVLAFAIAVLADFLLLLYVLTLLPGVQPDRRRLITAALIGAAGFELLKLLLGGYMKGVAAKNMYGAFGVPVALLLWINFTAKLLLFCAAWTATHSASSSTPKEEEASGPSRQS
>NZ_CP029191.1|WP_150188397.1|4979033_4979489_+|GtrA-family-protein
MRALGPELLGFAAAGICAYAADLGLFIWLRGPVGLDPLTAKSLSFVAGCSVAYAGNALGTYRGKTAEISRLRQYAVFFAVNIAGALVQLLCIAVSHYGLGHTSQRADTVSGAGIGMALATVLRFWGTRTLVFRTTGRTTGRTPGTEASWTG
>NZ_CP029191.1|WP_150185847.1|4992711_4993482_-|succinate-dehydrogenase-iron-sulfur-subunit
MATPTLDKEDVKPEAGFADSPYITITLRVRRFNPEVSADATWEDFHLEIDPKERVLDALHKVKWELDGTLTFRRSCAHGICGSDAMRINGKNRLACKTLIKDINPAKPITVEPIKGLTVLKDLVVDMDPFFQAYRDVMPFLVTKGNEPTRERLQSAEDRERFDDTTKCILCAACTSSCPVFWNDGQYFGPAAIVNAHRFIFDSRDEAGEQRLEILNDKDGVWRCRTTFNCTDACPRGIEVTKAIQEVKRALITRRF
>NZ_CP029191.1|WP_150185848.1|4993481_4995236_-|succinate-dehydrogenase-flavoprotein-subunit
MKIHKYDTVIVGAGGAGMRAAIEATKRSRTAVLTKLYPTRSHTGAAQGGMAAALANVEEDNWEWHTFDTIKGGDYLVDQDAAEILAKEAIDAVLDLEKMGLPFNRTPDGTIDQRRFGGHTRNHGEAAVRRSCYAADRTGHMILQTLYQNCVKEGVEFFNEFYVLDQLIVEVDGVKKSAGVVAYELATGEIHVFQAKSVIYASGGTGKFFKVTSNAHTLTGDGQAACYRRGLPLEDMEFFQFHPTGIWRMGILLTEGARGEGGILRNKDGERFMEKYAPVMKDLASRDVVSRSIYTEIREGRGCGPEGDHVYLDLTHLPPEQLDAKLPDITEFARTYLGIEPYTDPIPIQPTAHYAMGGIPTNVEGEVLADNSTVVPGLYAAGEVACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYAAKNDFVELPENPEELVVSQVERLRDASGNERVHEIRKELQETMDANVMVFRTEQTIKTAVEKIAELRKRYLNVSIQDKGKRFNTDLLEAIELGNLLDLAEVMAQSALARKESRGGHYREDFPNRDDVNFMRHTMAYREVGDDGTETIRLDYKPVVQTRYQPMERKY
>NZ_CP029191.1|WP_150171318.1|4995252_4995747_-|succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MSADTTLEKSGTSGIGPVEGASLYDSDNPAPVIEAPRKRTSKTPRSTRGNFEMAAWLFMRLSGVVLVVLVLGHLLIQLVLDGGVSKIGFAFVAGRWASPFWQVWDLLMLWLAMLHGANGLRTVINDYAERPNTRLWLKGLLYTATVFTILLGTLVIFTFDPNIR
>NZ_CP029191.1|WP_150185849.1|4995755_4996136_-|succinate-dehydrogenase,-cytochrome-b556-subunit
MPAGTLYRGREGMWSWVAHRVTGVLIFFFLFVHVLDTALVRVSPEAYDDVVSTYKTPIVALLEYGLVAAILFHALNGLRVIAVDFWSKGPRYQKQMLWTVVGIWVVLMVGALYPVLGHAVREVFGS
>NZ_CP029191.1|WP_150185850.1|4996285_4996864_-|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MPPPAQERTLHPHQLNSATPDAAEAALLTCCGSRRWARRVAAHRPYPDLEALLAASDEAAYDLSDADLTEALACEPLDTVLPQVPHQGAPRTGSTAAHTALRAAHAAYESRFGHTFVICLDDVPPSEALGQLLAGIRSRLGNDPEDERALAAEELRRLVRGRLTRLTLGDVPGHAARGQRSQPLPDSPYVPV
>NZ_CP029191.1|WP_150188399.1|4997148_4998702_+|family-20-glycosylhydrolase
MVLAVGFWPGGDGAGSGRAAPSGGRSAAAPSASPTKSYALSKAPATIPAVREHTAARGPGWRPDEGKGRVVVGDGALADEAKLLAGELKLKYGGESDPGKGDVQLTLDDDGEQDGSKGGDESYTLTVKGERVRISAPAEAGVFYGTRTLKQAVSGGRTAPEGVVRDRPAKPQRGFMIDIARKHFDLKWLEDRVRELGDLKYNQLGLHFSDDQAFRIESDSHPEIVSSDHLTKDQVRGLVKLAESRHITVVPEIDSPGHLGAVTREHPSLQLRNARGSVTRGAVDISKPEAAKIVDELLKEYAELFPGAYWHLGADEYLALTARDPEASYPQLAAAARERYGAGGRVQDLATGWLNDRADTVRPFGKKPKAWNDGFFRGGSTQAADDIEVAYWTGKEIGAREPDEYLKAGRKLVNYNDEYLYYVLGQPQTFRYPTGQRIYESWTPLVVRGTKPVSERYDDQILGGTFAVWGDLADAQTQEQVAAGIRMPLRATVQKLWDPRKPARAWKDFVKLADEVR
>NZ_CP029191.1|WP_150185851.1|4998818_4999340_+|hypothetical-protein
MGYWGYYVVGRSERPLVELAAVEGLRDELTLLDRRPDGWQVWEVPGGNGADGDGAPDVGNMNTLARESGAPALFGYVMDSSCVIIEAAAPESGAWTTCLARRAMAGYIDGSELTVEDYFLEPRDAAERAVAWAAESGRTVPAGPLLDVLNADAEPSAEELFFRFLDRLGVVPQ
>NZ_CP029191.1|WP_150185852.1|4999460_5000006_+|hypothetical-protein
MSLVELIAQADERGLAASGLACLDRCVPVLGGDDDVLRPLWARLAEGGDWRGPLAEARSALGAAPGTGTSHEAATLTRRMLDAVPAGPSGAEIREWADGCSVAALQVHRLLDTAPTDGTDAVSTLTSPLVAAELRRQVRILELLANKGAGPAGGLRQALDVSMEGRRVLRAVVSRRSRVRL
>NZ_CP029191.1|WP_150188400.1|5000035_5000398_-|hypothetical-protein
MCAGFVVYGFVGGDEPERRPAPTASVTYRVTGTGTGAADVSYVAEDAAGDADGGTRVELPWQKTVRVPLGKDPALSIRLGKQGGEVSCTLSVGGEHRQRATASGAYGRATCSAELPGKRE
>NZ_CP029191.1|WP_150188401.1|5000872_5001271_+|hypothetical-protein
MRGRAQGFVSRVTARNRLPLDFSVASLRIVDFLIDGLRKGGRPRAEIAGTLFGLGAYVGEVLVRRAGAVWVDFDQEQRQFFGQSVGVRMPDGRVWNPLGKVVNCLERGGTNGSEVSLQTFYLTLPGRVRHVA

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Crispr_ID: NZ_CP029191_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_13

5185426-5185506

Orphan

Consensus_repeat	Method
CAACCACGACGCACCCGCACCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_13

>merge|NZ_CP029191|13|5185426-5185506|CRISPRCasFinder
CAACCACGACGCACCCGCACCCGAGGAACGCCCCAGGGGCGCGGGGAACTGCGCGATCAACCACAACGCACCCGCACCCGA

>NZ_CP029191|13|13|5185426-5185506|CRISPRCasFinder
CAACCACGACGCACCCGCACCCGA	GGAACGCCCCAGGGGCGCGGGGAACTGCGCGAT
CAACCACAACGCACCCGCACCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150185983.1\|5178039_5179716_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
NZ_CP029191.1\|WP_150185993.1\|5189106_5189613_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240291
NZ_CP029191.1\|WP_150185990.1\|5185572_5186985_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP029191.1\|WP_150185982.1\|5176427_5177987_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238861
NZ_CP029191.1\|WP_150185992.1\|5188220_5188961_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP029191.1\|WP_150185994.1\|5190014_5191103_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP029191.1\|WP_150185995.1\|5191282_5191567_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185986.1\|5182405_5182924_+\|DUF4245-family-protein	unknown	unknown	gnl\|CDD\|379430
NZ_CP029191.1\|WP_150185987.1\|5183010_5183601_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP029191.1\|WP_150185999.1\|5196696_5197383_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185996.1\|5191548_5191962_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185984.1\|5179874_5180534_+\|DUF1707-domain-containing-protein	unknown	unknown	gnl\|CDD\|377959
NZ_CP029191.1\|WP_150185989.1\|5184014_5185283_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
NZ_CP029191.1\|WP_150185988.1\|5183747_5184005_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NZ_CP029191.1\|WP_150185991.1\|5187123_5188107_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP029191.1\|WP_150185985.1\|5181208_5182240_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP029191.1\|WP_150171609.1\|5180716_5181094_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP029191.1\|WP_150185997.1\|5192111_5195408_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224037
NZ_CP029191.1\|WP_150185998.1\|5195556_5196612_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150185981.1\|5174892_5176305_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|234779

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150185983.1\|5178039_5179716_-\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
NZ_CP029191.1\|WP_150185993.1\|5189106_5189613_-\|hypothetical-protein	gnl\|CDD\|240291	PTZ00146, PTZ00146, fibrillarin; Provisional.	0.00963353
NZ_CP029191.1\|WP_150185990.1\|5185572_5186985_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.64728e-37
NZ_CP029191.1\|WP_150185982.1\|5176427_5177987_+\|hypothetical-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	3.63606e-25
NZ_CP029191.1\|WP_150185992.1\|5188220_5188961_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.39379e-36
NZ_CP029191.1\|WP_150185994.1\|5190014_5191103_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP029191.1\|WP_150185986.1\|5182405_5182924_+\|DUF4245-family-protein	gnl\|CDD\|379430	pfam14030, DUF4245, Protein of unknown function (DUF4245). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 235 amino acids in length.	7.51061e-55
NZ_CP029191.1\|WP_150185987.1\|5183010_5183601_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	5.36376e-105
NZ_CP029191.1\|WP_150185984.1\|5179874_5180534_+\|DUF1707-domain-containing-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	9.15607e-20
NZ_CP029191.1\|WP_150185989.1\|5184014_5185283_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	3.38393e-159
NZ_CP029191.1\|WP_150185988.1\|5183747_5184005_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	2.44187e-20
NZ_CP029191.1\|WP_150185991.1\|5187123_5188107_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP029191.1\|WP_150185985.1\|5181208_5182240_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP029191.1\|WP_150171609.1\|5180716_5181094_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	3.22996e-20
NZ_CP029191.1\|WP_150185997.1\|5192111_5195408_+\|AAA-family-ATPase	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	4.4322e-29
NZ_CP029191.1\|WP_150185981.1\|5174892_5176305_-\|aspartate-ammonia-lyase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0

>NZ_CP029191.1|WP_150185989.1|5184014_5185283_-|exodeoxyribonuclease-VII-large-subunit
MALNTSADAPIPVGEVSRLIGGWIDRLGAVWVEGQITQLSRRPGAGVVFMTLRDPSHDISVSVTCYRQVFDAVADVVSEGARVVVRAKPEWYERRGQLSLRAAEIKPVGVGELLARIEQLKKSLGAEGLFSPERKKALPFLPQLIGLVTGRASAAERDVLENARHRWPAVRFEVRNVPVQGIHAVPQVVQAVKDLDAHDEVDVIIVARGGGSVEDLLPFSDEQLVRAVASCRTPVVSAIGHEPDNPLLDHVADLRASTPTDAAKKVVPDVGEEYERVQWLRDRARRSMDGFLEREARGLAHALARPCMEHPHRMVEEREEQVAALVDRSRRTLGHLLDRAGSELTHTHARVVALSPAATLQRGYAVLQKADGSVVRAPEDVDAGDELKARVAEGDFTVRAVQTTAQAEETAGTAQADAKSEN
>NZ_CP029191.1|WP_150185988.1|5183747_5184005_-|exodeoxyribonuclease-VII-small-subunit
MTSTTDHVTGSTDALGYEQARDELIEVVRRLETGGTTLEESLALWERGEKLAKICRRWLDGARARLDAALAGPEMDDEADTDEDA
>NZ_CP029191.1|WP_150185987.1|5183010_5183601_-|malonic-semialdehyde-reductase
MSLALDPAAQDLLFREARTANTFTDEPVTDEQVQAIYDLVKYGPTAFNQSPLRVTLVRSPEARERLVQHMAEGNRPKTAAAPLVAILSADNEFHNELPALFPHFPQAKDAFFSERPVREQAAQLNAALQAAYFIVGVRAAGLAAGPMTGYDPAGVQKEFLDDDHTPLMIVNIGKPGEDAWFPRSPRLSYEDVVTTV
>NZ_CP029191.1|WP_150185986.1|5182405_5182924_+|DUF4245-family-protein
MAGRQGTQTVKNMLWSLVVIALAAGVIYIFIPHNESKSSVKRVDYRVELLTARRAAAYPVAAPEGLAKAWKPTSVRFNGADHDTWHLGFLDPDEEYVAIEQSTEKPSAFIKRVTQNASKTDAADEIGGRTWQRYKGSKYDALVIEGQGATTVVTGTASFDQLAKMAESLKMS
>NZ_CP029191.1|WP_150185985.1|5181208_5182240_-|class-II-fructose-bisphosphatase
MTEHHLPSELEVSPEAPDRNLALELVRVTEAAAMAAGRWVGRGDKNGADGAAVRAMRTLVHTVSMNGVVVIGEGEKDEAPMLFNGERIGDGTGAEVDIAVDPIDGTTLCAKGMPNAIAVLAAADRGAMFDPSAVFYMDKLVTGPEAADYVDINAPVSVNIRRVAKAKNSSPEDVTVMILDRPRHEGIVKEIRETGARIKFISDGDVAGSVMAVREGTGVDLLMGIGGTPEGIISACAIKCLGGTIQGKLWPKDDEERQRAIDAGHDLDRTLSTDDLVKGDNVFFVATGITDGELLQGVRYRAATASTSSLVMRSKSGTIRKIDSDHRLSKLRAYSAVDFDRAK
>NZ_CP029191.1|WP_150171609.1|5180716_5181094_+|WhiB-family-transcriptional-regulator
MLQPSPHQSLQVAAVPAQREPVRDRDDDAPWHTEAVCRRDEAGLFFAPSKEPTAARLSREEAAKRVCARCPVMVECREHALLQPEPYGVWGGLTAAERRVVLARRRRRDLELQKAAHAAGIAAAG
>NZ_CP029191.1|WP_150185984.1|5179874_5180534_+|DUF1707-domain-containing-protein
MDLEKQQPSALRASDADRDRTADILREALAEGRLTADEHAERIDGVYRAKTMAELEPLVRDLPAAHEQPSARRAAPEPAPSRPSPGVVPPVADENLVAVLSSSVRRGRWRVGRRTHAYAVFGSVEIDLSEAIFEHRQVLIKAFAIFGSVEVRVPENVSLRGSGTGVLGSYEVDTLDSPDQDAPVVFVDGVAVMGSIEARPKRGKFVRDLHRQLRKHLGH
>NZ_CP029191.1|WP_150185983.1|5178039_5179716_-|fumarate-hydratase
MAVMPEFEYSDLLPLGEDTTPYRLVTAEGVSTFEADGRTFLKVDPEALRKLAAEAIHDIQHYLRPAHLAQLRRIVDDPEASGNDKFVALDLLKNANIAAAGVLPMCQDTGTAIVMGKRGQNVLTEGEDEKALSKGIFDAYTKLNLRYSQMAPLTMWEEKNTGSNLPAQIELYATDGGAYKFLFMAKGGGSANKSFLYQETKAVLNEASMMKFLEEKIRSLGTAACPPYHLAIVVGGTSAEFALKTAKYASAHYLDELPAEGSPTGHGFRDKELEEKVFELTQKIGIGAQFGGKYFCHDVRVVRLPRHGASLPVAIAVSCSADRQATAKITAEGVFLEQLETDPARFLPETTDEHLGEEEDVVKIDLNRPMDDILAELTKHPVKTRLSLTGPLVVARDIAHAKIKERLDAGEEMPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVEQFQAAGGSKVMLAKGNRSQQVTDACDAHGGFYLGSIGGPAARLAQDCIKKVEVVEYEELGMEAVWKIEVEDFPAFIVVDDKGNDFFQNPAPEPTFTHIPVRGPGLA
>NZ_CP029191.1|WP_150185982.1|5176427_5177987_+|hypothetical-protein
MKRIRRSGPGSGRGRLRCSFAAAVAMAAVLGTAAAVPAQAADGDTAKSAGATSLPPELEKIRAAEATKLYGSPAERPMADRKTGLISLGDSEISGEGVGTYEPGTDGPDNWCHRSPDAAIHRTGIPADVTYNVACSGAQTVNIKIGGQKQYADELVQSDNLAIKARNTRIKTILLVIGANDDLDFSGVMTDCVTRFLLSQGACAGKYDDGWQARVDGLVPKVERSIRDLKTVMKDAGYQEGDYKLVAMGYPSPIGPDFRDNPKFPGKLACGGLGYDSDTEWGRNTAVPAFETGMRKAARNAGATYLDNSRLFHGHEVCMEDTWARGLYVDLSNPFPPDSNSVRQSFHPNARGHAAFASCLTQIYHSDRREGSCADPASTGSPKLFEGAWDDVYRPLKNAATGTCLDVDASKSRNGTKVQGWDCTGNRNQTWWYDDTPGGQRSLHTGLTQDRCLDVPDSAYKEGTAVTLWNCHGGGNQKFVRDGATVRPAAANGLCLTLAGPKEPVRLQKCTGAANQRFA
>NZ_CP029191.1|WP_150185981.1|5174892_5176305_-|aspartate-ammonia-lyase
MTSDASEGHTGEYRTEHDSMGEVRVPAHAKWRAQTQRAVENFPISGQVLERAHIAALARIKAAAAKVNAELGVVDEDVADAIADAAAEVAEGRWDDHFPVDVFQTGSGTSSNMNTNEVIATLATERLGRDVHPNDHVNASQSSNDVFPSSIHIAATGAVSNDLIPALEHLAAALERKAEEFSDVVKSGRTHLMDATPVTLGQEFGGYAAQMRYGVERLRASLPRLAELPLGGTAVGTGINTPPGFSAAVIAEVARTTGLPLTEARDHFEAQGARDGIVETSGQLRTIGVGLTKIANDLRWMASGPRTGLAEISLPDLQPGSSIMPGKVNPVIPEAALMVAAQVTGNDATVAAAGAAGNFELNVMLPVIAKNVLESVRLLANVARLLADRTVDGITAHRERAREYAESSPSVVTPLNKYIGYEEAAKVAKKSLAERKTIREVVLESGYVERGDLTLEQLDEALDVLRMTHP
>NZ_CP029191.1|WP_150185990.1|5185572_5186985_-|amino-acid-permease
MSGQSASTGAHAEPARGAEPSPGDGLRRSLGFRDLVVYGLLFIAPMAPVGVFGTLDAKSHGAVALVYLVATVAMAFTAFSYAQMVRVVPQAGSVFAYARAGLGKGPGFIAGWMAMLDYLLIPAVAYLFSGIAMNSLVPSVSRWVWTALAVLITTALNLWGVRTAARVGFAVLAMEVVVLLVFVVAAVVVLIRDGATRDWLSPLAGDGSQGAFALSAVVGAVSIAVLSYLGFDAIASFAEEVTGGSAKVARAVLVCLALAGFLFILQTYLVALLEPMSSAELASDPGKQGTAFYDSVDSAAGSWLHDLVAVSKAIGAAFAALAGQAAAGRLLFAMARDRRLPKALSKTDSGTPRVALLCAAVITMVAAVWAARRDDGMDHLVSVVDIGALTAFLLLHASVVGWFALRHRDAGFSWWRHVLVPVLGAAIVIAVIWEASGSAQVVGAVWLGVGLVVLLAQGRARGRARGPVRD
>NZ_CP029191.1|WP_150185991.1|5187123_5188107_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MTATPGSRRVLLAAPRGYCAGVDRAVIAVEKALEQYGAPIYVRHEIVHNKYVVQTLEKKGAIFVDQTAEVPEGSIVMFSAHGVAPTVHAEAAERKLATIDATCPLVTKVHKEAVRFAKEDYDILLIGHEGHEEVIGTSGEAPDHITLVDGPEDVANVEVRDPDKVVWLSQTTLSVDETMETVDALKGKFPNLLSPPSDDICYATQNRQIAVKKLAEDAELVIVVGSKNSSNSIRMVEVALDAGAAASYLVDNAGEIDEAWLEGVTTVGLTSGASVPDVLVDGVIEWLAERGYGDVETVKTADESITFSLPKELRRDLRAEAAQLSQG
>NZ_CP029191.1|WP_150185992.1|5188220_5188961_+|ROK-family-protein
MQIFGVDIGGSGIKGAPVDLDRGDLTEERHKVLTPQPSTPDAVVDGVCEVVRHFGWTGPVGATFPGVITNGTARTAANVDKSWIGTDIQKLVSERLDGTKVTVLNDADAAGVAEMHFGAGRGRTGTVILLTLGTGIGSALFTGGRLVPNTELGHLELRGHDAEKKASSKAREDEDLSWEHWARRVQKYLAHVEMLFSPELFIIGGGVSRKSQKFLPLIEGISAEIVPAQLQNNAGIVGAAMAAAEA
>NZ_CP029191.1|WP_150185993.1|5189106_5189613_-|hypothetical-protein
MPNPRLTGLGSGLFCTAVMFLLACLLHLIGDGSVVAYGVLFVPVAALTALWVRPADLVTAPVAVPIAFAAGVLPVAEGTAGFGGRFMGLVTTLALQAGWLYGGTLVAGLIVTVRKIRLMVLRRQGRLTGPPAPAARSGSGGGGGGRGGGAGAGSAGNTGAAGKRLPTA
>NZ_CP029191.1|WP_150185994.1|5190014_5191103_+|redox-regulated-ATPase-YchF
MSLTIGIVGLPNVGKSTLFNALTKNDVLAANYPFATIEPNVGVVGVPDPRLTKLAEIFSSQKVLPATVDFVDIAGIVRGASEGEGLGNKFLANIRESDAICQVIRAFKDENVVHVDGKVSPKDDIETINTELILADLQTIEKVLPRLQKESRIKKDVAPKVRAVEEAQAILEKGDTLFSQGIVQGSGREELLHDLHLLTTKPFLYVFNVDEEELTDDAFKAEQSALVAPAEAIFLNAKLESDLAELDEDEALELLQSVGQEEPGLATLAHVGFRTLGLQTYLTAGPKESRAWTIPQGATAPEAAGVIHTDFQKGFIKAEVISFEDLVETGSVAEARAAGKARMEGKEYVMQDGDVVEFRFNV
>NZ_CP029191.1|WP_150185995.1|5191282_5191567_+|hypothetical-protein
MAGTTYSIGEGPATRVSLSLPEGTAEAIRARVGKREFSAFIAEAVERELRGQVLDEYLADYESRKGPVSEPARQRARQVFDEVFAEEAEWPAAG
>NZ_CP029191.1|WP_150185996.1|5191548_5191962_+|DNA-binding-protein
MARRRLSHEGTLVLDSEGLSKLLADDEQVVALIAEARSRGMEVVISALTIIEAVHARTNKSRLNWALSGLRVVPVGDEEARAASKLLMDAGLHGHKYAIDAAVAEAALRQHRPVIMLTSDIDDMAKLCGDRVRLVGI
>NZ_CP029191.1|WP_150185997.1|5192111_5195408_+|AAA-family-ATPase
MGWQEEVVSALDAWVAHEGVAAREPRWRPLGRAVRGRKPGEYVVDVRGSEAGTDQLQGDSLRLAGPDESDIDAGHSVLDVYKDGTALRVRVPEFADPADPCLWMKPQPTGFLVKALREGMASLADAPLAHLMARGEAGTGRLAATGLPPGTLLPAQDRAYRACMGEGLWLVWGPPGTGKTTVLKRAISDLVARGKRVLLVSATNIAVDNALWGVVKERRHGDGELVRVGPPHLREIAEDGSVCLTLMVRHRLTETDERRRAVAAQLVEARERARQLEELERGLTDFDAVAYAADRVRLDDPARASAALEQTLDQARRDAKDAEDTAVRLERSYQAALEAVRATKQAQTDWKTYDEYQESLDRLRRAVTDLQAKALVADRECAAAQELVDGLEQLKGFARRRAKRERETARTRLETARADAHHAAQKAVDARSVLARQENVVVTQLTEIGARIPYSKQEIELRQTTLKRVEKALEKARRHHLAEGAHLAVFARELGLSQAAEARIEEADRLGHPRRHAQVADLKPRVAQDQEHRPALERRHRELQEEYDKLARDAQGEIIRGAKVVATTLARFRTTKAVFEGEYDVVLVDEAGAATLPEVLLAVGKAKTTAVLLGDFMQLGPVLPQLDGSKRPDVARWILREVYEHFDIESPMAAVNHQGCVVLDVQHRFGHDVMSLANSLAYDGVLKAGPGIEQRAARRASDDPEIVIIDTDGLQNLAQVHRTGRRKGWWPAGSLLARALIDLHREDGEEAGVVTPYPVQAEATLEALRDNEGAGSRLAEVGTAHRFQGREFPVVIFDTVEDDYGDGLWMSRASRAPGASVWERNGIRLFNVAVTRVQTRLYVVGSRRRILAAGGQTAMGRLAALIGERRVRTVPATQLIAPGGRPDIPLGPFGTRLADVLSRHVEVSDVDDEISFYETFAARLAEARNSLWIWSPWTAKRLIGLLPVLDEAVHRGVRVTVFVRDPYDTGQKKQADLVRQLRAVVQTVVPVNVMHQKIVVIDEHTVLLGSLNSLSQSRSREVMLTIKGGHFARKILTHEHAEDFAEPPRCDACKGDEVDLRRRADGSWYWRCFNRMCSARRGSRAWEKAVRLKSGARR
>NZ_CP029191.1|WP_150185998.1|5195556_5196612_-|hypothetical-protein
MSEYQYYEFQALDRPLSPEEQAQLRAISTRARITATRFTNTYEWGDLKGDPRRMTERYFDAHLYVTNWGTHRLMLRLPEQTLSLPTALPYCLGPHLDAWTTRTHILLDLTSEDEDGDWVEGADDSLAALIGVRDELATGDLRPLYLAWLSALTAREREDDDEDEYRTCPEPPVPAGLGDLTAPQRALADFLRVDTDLLAIAAQTGPAPPKKPPKPAAESGLHTELLHRLRGTTAAPHTAPGRRTTAQLLDAAHTLRTDRRRHAEAERATARARHLTALADQAESVWQQIETHIATRKPSAHDRAVTLLADLRDACADTERHTSFHQRLTRLREANRHRPGLIQRLDRRDLR
>NZ_CP029191.1|WP_150185999.1|5196696_5197383_-|hypothetical-protein
MTVKREWTYEGTELAWLHDRLGRSVDGPGHVVSELVPEGYEAYVRIFHRFRATDGSGRSRRWQAWAKDSGVPFHPEMSHRWLRSDEPAPGPWRWAADDGVLDEHSRAALARLLATVSGEQGVYFAYDLGALLWGDHDEPLVRHGSLADLENVRESLRDALGESGPEFWWPQDRSWVVTTDYDLLSTYVGCSARTAERILTDETLEALPVTPRSRVDWDTEPPQGAATH

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Crispr_ID: NZ_CP029191_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_14

5472129-5472371

Orphan

Consensus_repeat	Method
CCGCGGGCTTCGCCGGGGCGGCGG	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP029191_14

>merge|NZ_CP029191|14|5472129-5472371|CRISPRCasFinder
CCGCGGGCTCCGCCTTCGCGGCGGGCTTGGCAGCATCGGGCTTGGCGGCGGGCTTCGCGGCGGGCGCCGGAGCGGCGGCCGCGGGCTTCGCGGGAGCGGCCGGTGCCTGCGCCTGGGGAGCGGCGGGGGCGGCCTGGGCCTGGGCCGCGGGCTTCGCCGGGGCGGCGGGCGCGGCAGGGGCGGGAGCAGTGGTGGACGCGGCCCCCGCGGCCGTGTCACCCGCCGGCTTCGCCGGGGCGGCGG

>NZ_CP029191|14|14|5472129-5472371|CRISPRCasFinder
CCGCGGGCTCCGCCTTCGCGGCGG	GCTTGGCAGCATCGGGCTTGG
CGGCGGGCTTCGCGGCGGGCGCCG	GAGCGGCGGCCGCGGGCTTCGCGGGAGCGG
CCGGTGCCTGCGCCTGGGGAGCGG	CGGGGGCGGCCTGGGCCTGGG
CCGCGGGCTTCGCCGGGGCGGCGG	GCGCGGCAGGGGCGGGAGCAGTGGTGGACGCGGCCCCCGCGGCCGTGTCAC
CCGCCGGCTTCGCCGGGGCGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150186173.1\|5464512_5465475_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176227
NZ_CP029191.1\|WP_150186179.1\|5475787_5476456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186178.1\|5474747_5475425_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|223498
NZ_CP029191.1\|WP_150186176.1\|5467591_5468401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186184.1\|5484752_5485250_+\|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl\|CDD\|214939
NZ_CP029191.1\|WP_150175870.1\|5472845_5473925_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP029191.1\|WP_150186171.1\|5461747_5462704_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270225
NZ_CP029191.1\|WP_150188450.1\|5480683_5481523_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_055568825.1\|5473944_5474682_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP029191.1\|WP_150172160.1\|5460004_5460766_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP029191.1\|WP_150186182.1\|5480110_5480620_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029191.1\|WP_150186172.1\|5463177_5464392_+\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP029191.1\|WP_150186170.1\|5460765_5461707_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_CP029191.1\|WP_150186181.1\|5479019_5479853_-\|lysozyme	unknown	unknown	gnl\|CDD\|119374
NZ_CP029191.1\|WP_150186183.1\|5481885_5484744_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NZ_CP029191.1\|WP_003961784.1\|5468430_5468613_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186180.1\|5476545_5478960_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP029191.1\|WP_150186174.1\|5465489_5466554_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NZ_CP029191.1\|WP_150186169.1\|5459093_5459879_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369778
NZ_CP029191.1\|WP_150186175.1\|5466555_5467434_-\|DUF4097-domain-containing-protein	unknown	unknown	gnl\|CDD\|372574

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150186173.1\|5464512_5465475_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.61555e-101
NZ_CP029191.1\|WP_150186171.1\|5461747_5462704_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.52154e-82
NZ_CP029191.1\|WP_150186184.1\|5484752_5485250_+\|roadblock/LC7-domain-containing-protein	gnl\|CDD\|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	1.35525e-12
NZ_CP029191.1\|WP_150175870.1\|5472845_5473925_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.31427e-50
NZ_CP029191.1\|WP_150186178.1\|5474747_5475425_-\|spermidine-synthase	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	4.75508e-12
NZ_CP029191.1\|WP_055568825.1\|5473944_5474682_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.25455e-83
NZ_CP029191.1\|WP_150172160.1\|5460004_5460766_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	7.56336e-156
NZ_CP029191.1\|WP_150186182.1\|5480110_5480620_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.85503e-18
NZ_CP029191.1\|WP_150186172.1\|5463177_5464392_+\|NADP-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	1.26711e-177
NZ_CP029191.1\|WP_150186170.1\|5460765_5461707_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.23995e-79
NZ_CP029191.1\|WP_150186181.1\|5479019_5479853_-\|lysozyme	gnl\|CDD\|119374	cd06412, GH25_CH-type, CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.	2.6578e-114
NZ_CP029191.1\|WP_150186183.1\|5481885_5484744_+\|HAMP-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	3.47242e-24
NZ_CP029191.1\|WP_150186180.1\|5476545_5478960_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP029191.1\|WP_150186174.1\|5465489_5466554_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.26339e-21
NZ_CP029191.1\|WP_150186169.1\|5459093_5459879_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.101e-16
NZ_CP029191.1\|WP_150186175.1\|5466555_5467434_-\|DUF4097-domain-containing-protein	gnl\|CDD\|372574	pfam13349, DUF4097, Putative adhesin. This has a putative all-beta structure with a twenty-residue repeat with a highly conserved repeating GD, gly-asp, motif. It may form part of a bacterial adhesin.	1.61905e-06

>NZ_CP029191.1|WP_003961784.1|5468430_5468613_-|hypothetical-protein
MYFTDRGIEELEKRRGEEEVTFEWLAEQLRTFVDLNPDFEVPVERLATWLARLDDEDEDE
>NZ_CP029191.1|WP_150186176.1|5467591_5468401_+|hypothetical-protein
MSSDAVSPGALLLCRAEPDVVEIAAQLLRERMLLAEAGRDWSVLVPEGKPWLHGEEPVDRVLTGWATALAVGSAWPVLALWWDGDRSGYTLASGFRRTVGYEWLANGTPVGEDEAMRTFAARLGLDPVLDMQSLEALARPDTEADARARMLGLLAVLTRAGLTLPPGLGPGEPADRLREAARVQQGVRQVEWPGWRDAVRAEFGAVEKGPLGPWVRGPRARALAAAQLAAGLPLAVWAVRRRSGGWGAAAALLMAQGAAGLAYDRVRSA
>NZ_CP029191.1|WP_150186175.1|5466555_5467434_-|DUF4097-domain-containing-protein
MSEWSVAEPMKLTFDAPVTALHVRVVNGTVNVVGTDEGAARLEVTEIEGPPLKVTHEDGTLTVAYEDLPWKGFLKWLDRKGWRRSALVSLAVPAATRVEVGVVGAGAVVSGIEGRTEVKGVTGDTTLLGLAGQVRADTVSGNVEAQGVTGDLRFNSVSGGLTVVEAAGHSVRADSVSGSMIVDLDPAGTPTDVALTSVSGEMAIRLPHPADAEVEVDTASGSVSNAFEDLRVGGQWGAKRITGRLGAGRGRLRATTVSGSIALLRRPQMEEDPYDDAGNEHKNDGSTDKKVL
>NZ_CP029191.1|WP_150186174.1|5465489_5466554_-|PadR-family-transcriptional-regulator
MPPVFAHGRLRLYLLKLLDEAPRHGYEVIRLLEERFHGLYAPSAGTVYPRLAKLEAEGLVTHTTEGGRKVYAITDAGRAELAGRSGELADLELEIRESVAELAAEIRDGVQGAAGDLRREMRAAAKEALSSEGTEGWHQTKEEFKRAKQGWKEQARRAKDESRRAREEAQRARRQAKDAQEQAHAQARQAQAEAQRIVRHVQEQVQDHFARGDWPTGVREGLTELAKEFGDFGTRLGKDFGKGFGTRTDSGTADSGTAEPGTADPGTAAAGKGPTFSVAREDLPVEYAPDWAKEDTTGDPGRDLDRLLDRFRDDIRDAARDHGVSESQLREARRHLSEAAAHIGAALRAPTPES
>NZ_CP029191.1|WP_150186173.1|5464512_5465475_+|zinc-binding-dehydrogenase
MFAAYAARIDRDQPLDGLELGERPAPEARPGWSTVNVKAASLNHHDLWSLRGVGLAEDKLPMILGCDAAGIDEDGNEVVLHSVIGQSGHGVGPHEGRSILTEKYQGTFAERVAVPTWNVLPKPKELSFAEAACLPTAWLTAYRMLFTNAGVRPGDSVLVQGAGGGVATAAIVLGKAAGLRVFATSRDEAKRKRALELGAVEAVEAGARLPQRVDAVIETVGAATWSHSVKSLKPGGSLVISGATSGDRPSHAELTRIFFLELKVVGSTMGTKDELEDLLAFCATTGVRPVVDEILPLDRAKEGFRRLESGEQFGKIVLAV
>NZ_CP029191.1|WP_150186172.1|5463177_5464392_+|NADP-dependent-malic-enzyme
MAAEIVNPRSDSSTDHEGADEPFDPAFALHRGGKMAVQATVPVRDKDDLSLAYTPGVAKVCSAIAERPELVHDYTWKSNVVAVVTDGTAVLGLGDIGAEASLPVMEGKAILFKQFGGVDAVPIALATTDADEIVETVVRLAPSFGGVNLEDISAPRCFEIERKLQERLDIPVFHDDQHGTAVVTLAALRNAAKLTGRTLGDLRAVISGAGAAGVAIAKFLLEAGLGDVAVADRKGIVSRDRDDLTPVKRELAELTNKAGISGSLEAALKGADVFIGVSGGTVPEPAVASMAPNAFVFAMANPNPEVHPDVAHKYAAVVATGRSDYPNQINNVLAFPGIFAGALQVRASRITEGMKIAAADALADVVGDELSADYVIPSPFDERVAPAVTAAVAAAARAEGVARS
>NZ_CP029191.1|WP_150186171.1|5461747_5462704_-|transporter-substrate-binding-domain-containing-protein
MTASSICRRTVGKSAKSRIAAVGTIAVVGSLLLSGCGDQTNDKGSDSVSNAPLADKLPKDIRDAGVIKVGSDIAYPPVEFKDKSGDTVGIDPDLGEALGKQLGVRFEFENGTFDTLLGGLRSKRYQVAMSAMTDTKNRQEGVDEETGKKVGDGVDFIDYFTAGVSIYTKKGDDQGIKTWADLCGKKIVVQRGTVSHDLAKAESKKCKGGKKIAIEQFDNDQQAQTRLRSGGADAGSSDFPVAAYAVKTSGGGKDFELVGEQVEAAPYGIAVSKKNPELRDAIQAALDAIIKNGDYEKIIKKWGVEDGAVEKAVINGGK
>NZ_CP029191.1|WP_150186170.1|5460765_5461707_-|ABC-transporter-permease-subunit
MTTDISKKGPEDDVPAARPAEAIKAIPVRHFGRYVAAVLAIGVLAAIVYAFSQGDINWGAIPDNFFDERILKGVRETLILTFLSMLIGVVGGVLLSVMRLSKNPVTSSIAWFYIWFFRGTPVLVQLFVWFNLGFVFDYINLGPVYKDEWSDFMTPFLTALLGLGLNEAAYMAEICRAGLLSVDEGQTEAAHALGMSHNKTLRRVVLPQAMRVVVPPTGNEFINMLKTTSLVAAVQYYELLKYAQDIGTSSGATVETLLLAACWYLIMTSILSVGQYYLERYYARGSSRTLPDTPFQKIKANMLSLGNRAGGVR
>NZ_CP029191.1|WP_150172160.1|5460004_5460766_-|ATP-binding-cassette-domain-containing-protein
MTAMVKSEGVHKSFGNVEVLKGIDLEVKTGEVFCLIGPSGSGKSTFLRCINHLEKINAGRLYVDGELVGYRQKGDKLYELKDSEVALKRRDIGMVFQRFNLFPHMTALENVMEAPVQVKGVAKAEARERAGQLLERVGLADKAGNYPSQLSGGQQQRVAIARALAMDPKLMLFDEPTSALDPELVGDVLDVMRDLAETGMTMVVVTHEMGFAREVGDSLVFMDGGVVVESGNPRDVLTNPQQERTQSFLSKVL
>NZ_CP029191.1|WP_150186169.1|5459093_5459879_+|methyltransferase-domain-containing-protein
MTETGTGTEAGAARGTDWRAWQDSWDRQQQWYLPDREERFRIMLDMVEAVVGTAPRILDLACGTGSITDRLLKRFPDATSVGVDLDPALLTIAEGTFAGDDRVTFVTADLKDPDWTAALPHDSYDAVLTATALHWLFSEPLAALYGQVAGLVRDGGVFMNADHMPDPATPRLNEADRAQRHARMDRAKAEGAVDWKEWWQLAAKDPVLAEPTARRFEIYGEHADGDTPSPEWHARTLREAGFGEARTVWASPSDAMVLGLK
>NZ_CP029191.1|WP_150175870.1|5472845_5473925_-|HAMP-domain-containing-protein
MYGPFGGLRPFSIKTKLGALVVVSVFITTGLLLVAMKTQTELRFITVFSVIATLLITQFVAHSLTAPLDEMNAVARAVSHGDYTRRARGADRRDELGDVAATINAMADDLEAQDTQRKELVANVSHELRTPIAALRAVLENVVDGVSAADPETMRTALKQTERLGRLVETLLDLSRLDNGVVPLKARRFEVWPYLSGVLKEANMVASARAGIASGSGSHTRTDVHLHLDVSPPELTAHADAERLHQVVANLIDNAVKHSPPHGRVTVRARRGPYPESLDLEVLDEGPGIPESEWHRVFERFNRGSHAGAPVKGSGNDGGTGLGLAIARWAVDLHGGHIGVAESPRGCRIQVTLPGLPEA
>NZ_CP029191.1|WP_055568825.1|5473944_5474682_-|response-regulator-transcription-factor
MEQTHTSHNGATAMPGAQRRVLVVEDDPTIVDAIAARLRAEGFVVQTAGDGPSAVDTAQAWQPDLLILDIMLPGFDGLEVCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERAALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLLAEVWDWADASGTRTVDSHIKALRRKIGAERIRTVHGVGYALETPTP
>NZ_CP029191.1|WP_150186178.1|5474747_5475425_-|spermidine-synthase
MRTDTTAPVVLDRREGPYGEVVLRRHGELLQIIANGCFLMDTSDGRSERLLVDAARDALDDRPAPALLIGGLGVGFSLAHAAADPRWGRIAVVEREQAIIDWHHGGPLAELSGAALRDTRAQILHTDLVSYVSGATESYDALCLDIDNGPGWTVTEGNNSLYSPAGLAACKARLNPGGVLAVWSAQPSSAFDDALRNAGFQRVRTEEIPVARGVPDVVHLGVRAA
>NZ_CP029191.1|WP_150186179.1|5475787_5476456_+|hypothetical-protein
MSGAPGTSARRPRLWRILPTPTGTPFTFGYAVILAATSLLTQYANPDLVDSLLHGSSTDVAHLTKSPLLVLVASALWIAGGITSPYAIVFLLVLTALERRIGGLRAAGVFLLGHVVATLATEVPVGFSVLAGHLPDSSLHRLDYGISFGVAASVGALAGLLTPWLRWTVLVCFGGMLVDDLIAFADPMTNWGHLLALTIGVLTWPLLRRVPVPARGLRNGVS
>NZ_CP029191.1|WP_150186180.1|5476545_5478960_+|endopeptidase-La
MATESASYTSLTLPVLPLDDEVVLPGMVVPFDLSDADVRAAVEAAQAAARSSGDSKPKVLLVPRIDGTYAATGVLGTVEQVGRLSDGDPGALIRGRSRVRIGAGTTGPGAALWVEGTKVDDAVPEPLPGAVTELVKEYKALATSWLKKRGAWQVVDRVTQIDDVAALADNSGYSPFLTTQQKIQLLETEDAVARLKLATAQLREHLAEQDVAETIAKDVQEGVDKQQREFLLRRQLDAVRKELREINGEQEGEESDDYRARVEAADLPEKVREAALKEVDKLERASDQSPEGSWIRTWLDTVLELPWNERTEDEYDIKGAQEILDAEHSGLQDVKERITEYLAVRKRRADRGLGVVGGRRGGAVLALVGPPGVGKTSLGESVAHAMGRKFVRVALGGVRDEAEIRGHRRTYVGALPGRIVRAIKEAGSMNPVVLLDEIDKVGSDFRGDPAAALLEVLDPAQNHTFRDHYLEVELDLSDVVFLATANVLEAIPEALLDRMELVRLDGYTEDEKVVIARDHLLPRQLERAGLDKDEVVLDESALRKLAGEYTREAGVRNLERSVARLLRKVAAQHELGDRELPFTVTDADLRGLIGRPRHVPESAQDPAERRTSVPGVATGLAVTGAGGDVLFVEASLADPETGASGLTLTGQLGEVMKESAQIALSFLRSHGAELELPVGDLKERGVHVHFPAGAVPKDGPSAGVTLTTALASLLSGRLVRTDVAMTGEISLTGRVLPIGGVKQKLLAAHRAGITTVIIPKRNEPDLDDVPAEVLEKLDVHAVTDVRQVLELALTAAEVKIPAAA
>NZ_CP029191.1|WP_150186181.1|5479019_5479853_-|lysozyme
MPVHRPGPARRSRLSPAGVLLAALSALSLLLTLPTAARADDVPERGTARLGQGVIEHDGQGGRPSGGDATQTEGVDVSSHQGNVAWSTLWNSGVKWAYTKATEGTYYKNPYFAQQYNGSYNVGMIRGAYHFATPDTASGAAQANYFVDNGGGWSRDGRTLPGALDIEWNPYGAACFGKTQSGMVSWIRDFLNTYKARTGRDAVIYTATSWWKQCTGNYSGFGASNPLWIARYNTSPGELPAGWGFQTMWQYTSSGPTVGDHNKFNGALDRVVALANG
>NZ_CP029191.1|WP_150186182.1|5480110_5480620_+|MarR-family-transcriptional-regulator
MGAAEEGVTPGAQDDDGGQETQEARGEDREFLSLERELSLLLRRARASSGEMARQVHPDLEPAAYGLLVCLDDSGPQRATDLAAFIGVGKATMSRQLRALEELGLVAREPDPADGRAWLIRLTPEGRTRFRTVRAARRARYVRRLASWDRAEVAELARLLGRLNASAEN
>NZ_CP029191.1|WP_150188450.1|5480683_5481523_-|hypothetical-protein
MELATEPGDPARPNEDYASVALPASGQGGSLVLLDGVTPPEGSVGCPHSVPWFTARLGGALGELSVSRRDMTLTEVLAAGITRTAEAHGSTCDLSHPRTPQATVVLVRWDDERVEHLVLSDSALLIAGHDGEVTAVLDRRLAELPPAVQALRDQVRALPRGSAERDVAARAYGTAVEALRNAEDGFFTAASDPSAAGRAVTGELPRADVTAVAALTDGAGRWVETFREGDWTDCFALLRKQGPRHLVDRVRELERADPDRLAFPRGKRHDDAAVVYAEW
>NZ_CP029191.1|WP_150186183.1|5481885_5484744_+|HAMP-domain-containing-protein
MRAPVQKMRPRRKGKQTAPEGATPGATTPTEHVPERTAADASAPDAAPPPVNKAPTARVRNRLIVAVAVVAAAIAGAGAPAVLAASADLNDTQNLVTLAEQTQQAVSLGHSLADERDEVTTFIAAGRPQDKGLSQSRSARVDRQIDELRGADAPAGLRGDLADIAAVRRAALTGKSTALEAHEAYTKVIAELHGLTRDLAEKLPPEANQGALALSDLDHAVEQAAAARGLLLAALALPRPTGTSTVDPVTGLPTTVTEESPTDAKRRDELSSAAQQARVRELAALADFRDAASDPARATYESTVTGSEVGAAEKYLERLTDQPKLSAAERRYDRKKVDAALSARIETMRGAESALAVERTKHLAQLRDDDVTALEIRIALVGVCLLVAVGVAMGAARSLTRPLAVLRLGSARLATDPAPQEPIRFTGRDDEFAQVVRSVNALHGHAAALTERLATLESDRKHLIGQRQSMADERAALREELAEASAHLERVRQSIHGTFVNLALRTLGLVERQLAVIEHLEDREQDPDRLATLFKLDHLATVMRRHSENLLVLAGAEHGHQHPGAVPLVDVVRAAVSEIERYERVRIATLPPHTHVAGFAADDISHLTAELLENATSFSPPDSSVEVSGWLLENGEVMLSVQDEGIGVTQDRMRELNARLADFDPDDAYDQESGDGLGLGLYVVARLAARHGARVRLRDQKQGGVAAVVVLPEGILADAPSQAPVVTPPRAGEPLTHLPGSEAEANSNVLPGRLAGAPGEDPLIAAAERTLETERPSPSPEPGPGPGPDAGPEPDTDPTPEPGPDPDTGPSPSPETTMELAVPPVPEETAEELAPEPQPQPQPETEQESAPQPEPDSTRPAPPKWERVTDKGLPKRTPKITAPAAAAPTPRTGSVDAESLRRRLGNFHQGAISGRRDVEAEIAGDGSGDDSGDEKNERAADVMGDPVEEASS
>NZ_CP029191.1|WP_150186184.1|5484752_5485250_+|roadblock/LC7-domain-containing-protein
MRTPSSSAEPATYGLSREARNLHWLLTNLVEEVPGLLSVAVVSSDGLLLLSSDPGRNAEQPAEKPTGPKGSSADLATIVSGLGSLTIGAAKLMDGGGVKQTVVAMEEGSLFVTVISDGSLLGVHATPDCDMSVVAYHMALFVGRAGHVLTPELRSELRQSMESAR

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Crispr_ID: NZ_CP029191_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_15

5573674-5574085

Orphan

Consensus_repeat	Method
CGGCCTCCGNGCGCAGNCG	CRT

6 spacers

The CRISPR arrays of NZ_CP029191_15

>merge|NZ_CP029191|15|5573674-5574085|CRT
CGGCCTCGCGGCGACGGCGCGCCGCCTCCTCCTGCGCGGCGGCCAGCTCCTCGGCGGCCTCCGCGCCCACGCGCTCGGCGGCGGCAGCGGCCTCCGCGCGCACGCGGTCGGCGGACTCCTGCGCCTCGGTCTTCAGTCGCTCGGCCTCGGCGGCGGCCTCCGAACGCAGGCGCACGGCGATGTTCTCGCCCTCCGCGCGGGCCTGTGACGCGTCGGCGGCGGCCTCCGTGCGCAGCCGCTCCGCCTCCGTCTCGGCCTGCGACTGGAGCGTACGGATCCGCTCGGCGGCCTCCGTGCGCAGCCGGTCCGTCTCGTCCGCGGCCTCCTTGCGGATGCGCTCGGCCTCCGCGCGGGCGTCGGTCAGCGCCTGCTCGGCGGCCGAAAGACGCTCCTCGGCCTCCGTGTGCAGCCG

>NZ_CP029191|15|1|5573674-5574085|CRT
CGGCCTCGCGGCGACGGCG	CGCCGCCTCCTCCTGCGCGGCGGCCAGCTCCTCGGCGGCCTCCGCGCCCACGCGCTCGGCGGCGGCAG
CGGCCTCCGCGCGCACGCG	GTCGGCGGACTCCTGCGCCTCGGTCTTCAGTCGCTCGGCCTCGGCGG
CGGCCTCCGAACGCAGGCG	CACGGCGATGTTCTCGCCCTCCGCGCGGGCCTGTGACGCGTCGGCGG
CGGCCTCCGTGCGCAGCCG	CTCCGCCTCCGTCTCGGCCTGCGACTGGAGCGTACGGATCCGCTCGG
CGGCCTCCGTGCGCAGCCG	GTCCGTCTCGTCCGCGGCCTCCTTGCGGATGCGCT
CGGCCTCCGCGCGGGCGTC	GGTCAGCGCCTGCTCGGCGGCCGAAAGACGCTCCT
CGGCCTCCGTGTGCAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150188461.1\|5568061_5568823_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186254.1\|5566696_5567911_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP029191.1\|WP_150172322.1\|5581910_5582387_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP029191.1\|WP_150186259.1\|5576636_5577839_+\|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP029191.1\|WP_150172321.1\|5579759_5580425_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP029191.1\|WP_150172295.1\|5562741_5563413_-\|endonuclease-NucS	unknown	unknown	gnl\|CDD\|235114
NZ_CP029191.1\|WP_150186258.1\|5576057_5576498_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|213772
NZ_CP029191.1\|WP_150188463.1\|5582505_5583261_-\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP029191.1\|WP_150188460.1\|5565743_5566532_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186262.1\|5583317_5583968_-\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP029191.1\|WP_150186253.1\|5565377_5565716_+\|ATP/GTP-binding-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186252.1\|5564133_5565168_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_CP029191.1\|WP_150188462.1\|5580430_5581879_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP029191.1\|WP_150186261.1\|5578925_5579609_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP029191.1\|WP_150186256.1\|5569673_5570654_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP029191.1\|WP_150186263.1\|5583969_5584608_-\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP029191.1\|WP_055700062.1\|5570729_5571665_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_CP029191.1\|WP_150186260.1\|5577896_5578856_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|224617
NZ_CP029191.1\|WP_150172297.1\|5563667_5564060_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186255.1\|5568899_5569670_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|372253

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150186254.1\|5566696_5567911_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	2.07725e-95
NZ_CP029191.1\|WP_150172322.1\|5581910_5582387_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.57903e-14
NZ_CP029191.1\|WP_150186259.1\|5576636_5577839_+\|acetyl-CoA-C-acyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP029191.1\|WP_150172295.1\|5562741_5563413_-\|endonuclease-NucS	gnl\|CDD\|235114	PRK03298, PRK03298, endonuclease NucS.	2.40348e-178
NZ_CP029191.1\|WP_150186258.1\|5576057_5576498_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	7.99471e-52
NZ_CP029191.1\|WP_150188463.1\|5582505_5583261_-\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	7.504e-07
NZ_CP029191.1\|WP_150186262.1\|5583317_5583968_-\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.32471e-39
NZ_CP029191.1\|WP_150186260.1\|5577896_5578856_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|224617	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism].	3.50784e-123
NZ_CP029191.1\|WP_150188462.1\|5580430_5581879_+\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.01926e-47
NZ_CP029191.1\|WP_150186261.1\|5578925_5579609_-\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	2.46343e-08
NZ_CP029191.1\|WP_150186256.1\|5569673_5570654_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.23262e-92
NZ_CP029191.1\|WP_150186263.1\|5583969_5584608_-\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	1.62862e-36
NZ_CP029191.1\|WP_055700062.1\|5570729_5571665_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.50931e-06
NZ_CP029191.1\|WP_150186252.1\|5564133_5565168_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	1.34897e-54
NZ_CP029191.1\|WP_150172321.1\|5579759_5580425_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.10873e-84
NZ_CP029191.1\|WP_150186255.1\|5568899_5569670_-\|ABC-transporter-permease	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	0.000176967

>NZ_CP029191.1|WP_055700062.1|5570729_5571665_-|hypothetical-protein
MSDTSPYGFELVRRGYDRAQVDERISKLVSDRDSALARITALEKRIEELHLETQNAQAQVADAEPSYAGLGARVEKILRLAEEEAKDLREEARRAAEQHRELAESAAQQVRNDAESFAAERKAKAEDEGVRIVEKAKGEASALRAEAQKDAQSKREEADALFEETRAKAAQAAADFETNLAKRREQSERDLASRQAKAEKRLAEIEHRAEQLRLEAEKLRTDAERRARQTVETAQRQAEDIVADANAKADRIRSESERELAALTNRRDSINAQLTNVREMLATLTGAAVAAAGTPAEDEPISRGVPAQQTR
>NZ_CP029191.1|WP_150186256.1|5569673_5570654_-|ATP-binding-cassette-domain-containing-protein
MIELEGLTKRYGEKMAVNNLTFTVRPGMVTGFLGPNGAGKSTTMRMLLGLDNPSAGSVRIDGRHYAQLKDPLKYIGALLDAKAMHGGRSAYNHLLCLAQSNGIPRARVAEVLDTVGLTAVAKKKAKGFSLGMGQRLGIAGALLGDPEILMFDEPVNGLDPEGIHWIRNLMKSLAAQGRTVFVSSHLMSEMALTADHLVVIGQGRLLADMSMSDFIRRNSRSYVRLRSPQRERLLDVLHEAGITAVEAGNGALEVDGTPAEELGELAASRQLVLHELSPQQASLEEAFMQLTAESVEYHAHTGDTAAQPPPPGGWGDGWQQQQRKGA
>NZ_CP029191.1|WP_150186255.1|5568899_5569670_-|ABC-transporter-permease
MAATQILQSEWTKIRSVSSTIWTLGLAFVVTIALGTLISILSKNDYDGLDAKDRLTFDPTYISFAGMSLGQLAMIVFGVLVVANEYSTGMIRTSLAAVPQRATFLFGKIAVATLLAFVVGLATSFVTFFVGQAMLGPYKAHLGDPGVLRAVIGGALYMTLIAVFSMGVAAMLRSPMLSLGILMPFFFLISSILGNVSATKKIGRFLPDQAGSKIMQVKSPFDDDTPYGPWGGLAIMLAWVVLALIGGYVLLKKRDA
>NZ_CP029191.1|WP_150188461.1|5568061_5568823_-|hypothetical-protein
MLQPLTYPGLPVTAPALLTGTELLPLRARPGGLGTWGVEAAGARRTLDDVLGALGQAPVAGRHPVLAVGSNASPGQLAHKLGRLGIPNTVPMVPVRLRGLGIGCSAHIGRAGYVATAPYARAGERRTLVVSWLDPAQLPAIDATELPNYRRVPLSGEAYGMTLPSGEPLTGASVYVSARGVLADPLTGLPRPGGGDQAALLDALLDASAPLRELLGPDAATWVRRAAADPELRARGTLLFAEEGWVLPWTDLP
>NZ_CP029191.1|WP_150186254.1|5566696_5567911_-|ATP-binding-cassette-domain-containing-protein
MIEAVGLTKRYGAKTAVYNLSFQVRPGTVTGFLGPNGSGKSTTMRMILGLDAPTSGQVTIGGYPYRKLPNAPRQVGALLDAKAVHGGRHARNHLLCLAQLSGIPARRVDEVLGVVGLQDVAKKRSKGFSLGMGQRLGIAAALLGDPQVLLFDEPVNGLDPEGILWVRNLMKSLAAEGRTVFVSSHLMSEMALTAEHLVVIGRGQLLADMSVRDFISHNSADFARVRTPDGEATAREKLTAALTEAGGQVLPEQDGALRVTGLPLPRISDLAHGADVRLWELSPHQASLEEAYMRMTQGAVDYRSTVDQRAGFQQEMPPGALPPGQQPPVPGQGQPGWYAPPPPQPGGQPFAMPQPQGAPGTPNPYAAAPPQQAPAAAPAAPAAAPSPAPAPAPDMTKRDSEDKR
>NZ_CP029191.1|WP_150188460.1|5565743_5566532_-|ABC-transporter-permease
MANAYTSPIPVKKTHLGNALSSEWTKIKSVRSTMWTLGIFLLLVIGIGLLAVANTDPVDYATMPFTVPAFFGLMLGQICLITLGVLVTSSEYGTGMIRTTFTASPQRHRVLTAKIIIFFVVAFVVSAGSILLVGLAASAANSGPEAGDVPWAGTVFKGGLYVSLLGVLALAVGSMLRHSAGAITAMLGVVLLPAILGGFLMIWESTQPLGEKMNDYNAITALAKIFGADDTGASGGSQLTLLVVITLAAVAGAFALLEKRDV
>NZ_CP029191.1|WP_150186253.1|5565377_5565716_+|ATP/GTP-binding-protein
MSPRRNRPKGAGEPSQATATGAEPSGRYGGFQSTESWQGEEWSVRHVAGASAAGKRYRCPGCDQEIPSGLAHVVAWPEHSGVDERRHWHKACWNAKDRRTTRVQRSRNAPRY
>NZ_CP029191.1|WP_150186252.1|5564133_5565168_-|LLM-class-flavin-dependent-oxidoreductase
MRVGSFVLAAQFPGQGQGEALHRAVRSAEVAEEAGLDSVWLAEHHFVPYGTCPSAVTLAALILGRTRRIHVGTAVSVLPTAHPVALGEQAALLHVTTGGRFSLGVGRGGPWVDLEVFGAGLEAYEKGFPESLDLLLRWLREPRVAGNGERFAFREVAVVPRPQEALNGQGAEGPEVVVACTSPSSVRLAAQRCLPMLLGMHVGDDEKAEMVALWNRHARAAGHPPERVSAAPHVSAGVAQVADRRLDAAEALQKAMPGWLKQGLDAHVTVDDRHRAMRDPVAYTELLCKLHPVGTPQVCADRLAATAERTGITRFALLVEGSGDLAATEENVRRLGAEVLPQLR
>NZ_CP029191.1|WP_150172297.1|5563667_5564060_+|hypothetical-protein
MSLDVSPALLEQAERGEVDEAEFVDCVRTSLPYAWEMISSLVAQLKVDGGEFADNQTPPPDEQARGQLLRALASDAIRGALQRHFGVRLAFQNCHRVAVFPLDPAVDDRLARFTSIRGQLLNQSPELRDC
>NZ_CP029191.1|WP_150172295.1|5562741_5563413_-|endonuclease-NucS
MRLVIARCSVDYAGRLTAHLPSAPRLILVKADGSVSIHADDRAYKPLNWMSPPCTLKEGTGDDAGVWTVVNKAGEKLIITMEEVLHDSSHELGVDPGLIKDGVEAHLQELLADRIETLGEGYTLIRREYMTAIGPVDILCRDADGQTVAVEIKRRGEIDGVEQLTRYLELLNRDPHLAPVRGIFAAQEIKPQARVLATDRGIGCTVLDYNALRGIEDDKLRLF
>NZ_CP029191.1|WP_150186258.1|5576057_5576498_-|methylmalonyl-CoA-epimerase
MLTRIDHIGIACFDLDKTVEFYRATYGFEVTHSEVNEEQGVREAMLKINDTGDGGASYLQLLEPTRDDSAVGKWLAKNGEGVHHIAFGTADVDGDAAAIKDKGVRVLYDEPRIGSMGSRITFLHPKDCHGVLTELVTSAPSDSLEH
>NZ_CP029191.1|WP_150186259.1|5576636_5577839_+|acetyl-CoA-C-acyltransferase
MAGTTGTTSVIVSGARTPMGRLLGSLKSFSGADLGGFAIKAALERAGIGGDQVQYVIMGQVLQAGTGQIPARQAAVKAGIPMNVPALTINKVCLSGLDSIALADQLIRAGEFDIVVAGGQESMTNAPHLLPKSREGHKYGAIEMIDSMAYDGLTDSFDGVAMGESTEKHNTRLGIGRPEQDEVAALSHQRAAAAQKNGLFEAEITPVEIPQRKGDPVLFAQDEGIRGETTVETLAKLRPAFAKDGTITAGTSSQISDGAAAVVVMSKAKAEELGLAWLAEIGAHGNVAGPDSSLQSQPSNAIQHALKKEGLAVADLDLIEINEAFAAVAVQSMKDLGVSSEKVNVNGGAIALGHPIGMSGARLVLHLALELKRRGGGVGAAALCGGGGQGDALIVKVAKA
>NZ_CP029191.1|WP_150186260.1|5577896_5578856_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MQDVPSLVAQAREGRPRAVARLISLVEGASPQLREVMAALAPLAGHAYVVGLTGSPGVGKSTSTSALVSAYRRTGKRVGVLAVDPSSPFSGGALLGDRVRMSDHASDPGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVILVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKADRDGADATARELNHMLGLGESRGPGDWRPPIVKTVAARGEGVDEVVEALEKHRAWMEERGVLGERRVARASREVETIAVTALRERIGSLHGDLRLSALAERIVAGELDPYTAADELVEGLTESV
>NZ_CP029191.1|WP_150186261.1|5578925_5579609_-|PepSY-domain-containing-protein
MKRNIVIATVAAAALIGGGTAAFATGGDDDSAASKSSVQLKDSDRKDDRDDDRDDAAENTAEAKAAKVTAADAIKAALADTSGTAVSAELDDEDGGLVWDVDILKGKTWHSVEVDPGTGKVLGSWVDKDDDKDDAAEDAADAARINSALKGASVSAADAAKAGADKGTVTSVDLDDDGTATAWNVETTDAKGAESEYDVDLKTGKVTADRTDTHDDDHGDHDGQDDD
>NZ_CP029191.1|WP_150172321.1|5579759_5580425_+|response-regulator
MRLLIVEDEKRLALSLAKGLTAEGFAVDVVHDGVDGLHRASEGTYDLVILDIMLPGMNGYRVCSTLRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRGTAGPSPVHTLGDLRIDTAARRVFRGEDEVTLTAKEFAVLEQLVLRSGEVVSKGDILDHVWDFAYEGDPNIVEVYVSTLRRKLGAALIKTVRGAGYRLEAPR
>NZ_CP029191.1|WP_150188462.1|5580430_5581879_+|HAMP-domain-containing-protein
MSRLFGSVRARATLGASLVVALALVAAGAAVLLSLRGNLTDQAGSRADSAARKVASQLLTVRSFGDLDLPDDEDQPVQVVDGDGRLVAANDDLQRISGTGVDQVKPGRGGAGAKEDGGDVEDRGDREDRGDREDGEIDDETKYTDGSATIDGESAQYRFAAVEVSSPKGDFTVYAGGSLASEKSAVSTALTAMLIGFPLLLAVVAGVTWLVTRRALRPVAAITAEMSAITASEDLARRVPEPDTHDEIARLARTTNETLTALQTSVERQRRFVADASHELRSPIASLRTQLEVGAAHPELLDVDGAVEDTVRLQELAADLLLLARLDAGEKPGAGRVDLAAFVREELSQRTRDRVEVHAELKSAEVAGSRSQLARVLGNLLNNAQRHARSRVTVTTRSDGAWAVLEVADDGSGVPEGERERIFERFVRLDDARTRDEGGAGLGLAIARDVAARHGGTLVVREAPSGGALFELRLPGPQSSAE
>NZ_CP029191.1|WP_150172322.1|5581910_5582387_-|MarR-family-transcriptional-regulator
METETAPQWLTDEEQCAWRTHVEVNRMLTYQLEKDLQPFNLTMNDYDILVYLSESEELRMRMSDLAAATLQSKSRLSHQITRMENAGLVRRENCESDRRGLYTVLTEEGMETMRKVAPHHVASVRRHFVDLISDEALEDLRKALTPIAEHLRSQRGKP
>NZ_CP029191.1|WP_150188463.1|5582505_5583261_-|AIM24-family-protein
MTLPSDDSVNPYTFCVELKGNQWFLQKGKMIAYYGRIEFNGIGHGRLDRLVRTSFHSPLHASDWVVADGQGKMLLADRAFDVNSYDLEEGNLTIRSGNLLAFQPTLALKQSIVPGFLTLIGTGKFVAASNGPVVFMEPPIRVDPQALVGWADCPSPCHHYDHGYLTGVIGGVRALTGIGGTSGEEHQFEFVGAGTVLLQSSEALMPERASGEVPHQGGVPGGRGTPGQPGQQPGAPRLPGQLGDLQRRFGL
>NZ_CP029191.1|WP_150186262.1|5583317_5583968_-|AIM24-family-protein
MPFREINSKMIEATVHPGTKIFSQRGAMLAYQGEVSFTPNLQGGQGGLASMIGRRVAGEATPLMTVEGSGTVLFGHGGHHIQVIGLSGDTLYVEADRLLAFDGTLQQGTMFLGSQGGVMGMVRGQVSGQGLFTTTLKGHGAVAVMAHGGVIEVPITPQRPVHVDPQAYVAHHGDVRNKLSTALGWRDMVGRGSGEAFQLELSGTGAVYVQASEEKL
>NZ_CP029191.1|WP_150186263.1|5583969_5584608_-|AIM24-family-protein
MATFRLQGSRVLAVDMTGDAVKAKNGSMVAYDGQMAFKKMTGGGEGIRGMVTRRVTGEQMTVMEVKGHGTCWFADRATEINLVRLNGEKLYVEASNLLCTDAGLRTGTSFTGMRGATQGNGLFTTTVEGTGQAAIVSDGPAVALRVSREYPLTVDPGAYIAHQGDVRQSFQSGVTFRTFMGEGGGEAFQVRFEGEGLVYVQPSERATIAGDV

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Crispr_ID: NZ_CP029191_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_16

5959787-5959884

Orphan

Consensus_repeat	Method
CCGAAGCCGCCGGCGCCCAAGCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_16

>merge|NZ_CP029191|16|5959787-5959884|CRISPRCasFinder
CGCAAGCAGGCCGCCCCCAAGCCGGCGAGCCCCGCGGCTCCCGCAACCCCCTCTCCCGCGCAGGCCGCCCGTCCGGGTCCGGCCGCGCCGAAGCCGCC

>NZ_CP029191|16|15|5959787-5959884|CRISPRCasFinder
CGCAAGCAGGCCGCCCCCAAGCCGGC	GAGCCCCGCGGCTCCCGCAACCCCCTCTCCCGCGCAGGCCGCCCGT
CCGGGTCCGGCCGCGCCGAAGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150186520.1\|5973965_5975885_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP029191.1\|WP_150186519.1\|5972867_5973962_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP029191.1\|WP_150186512.1\|5958029_5959019_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP029191.1\|WP_150186513.1\|5959151_5959442_+\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP029191.1\|WP_150186510.1\|5956695_5957262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186509.1\|5956213_5956699_-\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NZ_CP029191.1\|WP_150188497.1\|5970862_5971882_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP029191.1\|WP_150188496.1\|5964857_5968358_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP029191.1\|WP_150186505.1\|5950499_5951657_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP029191.1\|WP_150186516.1\|5963657_5964563_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP029191.1\|WP_150172847.1\|5962855_5963149_+\|DUF503-family-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP029191.1\|WP_150186511.1\|5957529_5958027_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP029191.1\|WP_150186508.1\|5955286_5956186_-\|kinase	unknown	unknown	gnl\|CDD\|309685
NZ_CP029191.1\|WP_150186515.1\|5963199_5963661_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP029191.1\|WP_150186507.1\|5953517_5955212_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP029191.1\|WP_150186506.1\|5952889_5953441_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP029191.1\|WP_150186518.1\|5971920_5972871_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP029191.1\|WP_150186517.1\|5968512_5969466_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP029191.1\|WP_150172827.1\|5952011_5952860_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379120
NZ_CP029191.1\|WP_150188498.1\|5969795_5970761_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150186520.1\|5973965_5975885_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.63147e-111
NZ_CP029191.1\|WP_150186519.1\|5972867_5973962_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.58814e-113
NZ_CP029191.1\|WP_150186512.1\|5958029_5959019_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP029191.1\|WP_150186513.1\|5959151_5959442_+\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.40112e-25
NZ_CP029191.1\|WP_150186509.1\|5956213_5956699_-\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	2.64353e-38
NZ_CP029191.1\|WP_150188497.1\|5970862_5971882_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.17953e-143
NZ_CP029191.1\|WP_150188496.1\|5964857_5968358_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	8.47376e-08
NZ_CP029191.1\|WP_150186505.1\|5950499_5951657_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP029191.1\|WP_150186516.1\|5963657_5964563_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	9.17375e-163
NZ_CP029191.1\|WP_150172847.1\|5962855_5963149_+\|DUF503-family-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	1.25283e-36
NZ_CP029191.1\|WP_150186511.1\|5957529_5958027_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.55421e-46
NZ_CP029191.1\|WP_150186508.1\|5955286_5956186_-\|kinase	gnl\|CDD\|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	4.17557e-63
NZ_CP029191.1\|WP_150186515.1\|5963199_5963661_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.53458e-47
NZ_CP029191.1\|WP_150186507.1\|5953517_5955212_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP029191.1\|WP_150186506.1\|5952889_5953441_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.33409e-07
NZ_CP029191.1\|WP_150186518.1\|5971920_5972871_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.25031e-90
NZ_CP029191.1\|WP_150186517.1\|5968512_5969466_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.10079e-147
NZ_CP029191.1\|WP_150172827.1\|5952011_5952860_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379120	pfam13312, DUF4081, Domain of unknown function (DUF4081). This domain is often found N-terminal to the GNAT acetyltransferase domain, pfam00583 and FR47, pfam08445.	4.25305e-47
NZ_CP029191.1\|WP_150188498.1\|5969795_5970761_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.0023e-120

>NZ_CP029191.1|WP_150186513.1|5959151_5959442_+|DUF448-domain-containing-protein
MSGRTHARACPERTCVGCRERAAKSDLLRIVRKEGACVPDPRGTLPGRGAYVHPALVCLDLAVRRRAFPRAFRAQGPLDTEALRRAVETVAQEATP
>NZ_CP029191.1|WP_150186512.1|5958029_5959019_+|transcription-termination/antitermination-protein-NusA
MDIDMSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSHRRARVKLDRESGHVTVWAKEEADDLEEGQEPREFDDTPSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEQYPHGMRLRSYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGSRVRNVMGELNGEKIDIVDWSDDPAEMVAHALSPARVSKVEVVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPADQ
>NZ_CP029191.1|WP_150186511.1|5957529_5958027_+|ribosome-maturation-factor-RimP
MSTTQSERLRQLLEPLVTSQDLDLEEIEVASVGRKRVLRVVIDSEDGVDLDQIADVSRALSAKLDETDAMGEGEYDLEVGSPGAERALTERRHYLRAVDRLVKFTLTEGGEVTARILTVDDEGLDLEVPGVKGRKPTSRRLAFDEIEKARVQVEFNRKDKKEEEA
>NZ_CP029191.1|WP_150186510.1|5956695_5957262_-|hypothetical-protein
MPSYRTAPRSRPGPRRRSLLAGAAGVASAALLAGCSDSADSDPDGRPSAARRLRAAAAKDSRELLRRYDAVLAAHPSLDGRLGPLRGEVKRHVEAFEKSTGPTGTDGKTPSPAASGPAGGSASKAPSPSVASDPKKAVRDLAEAERELADRRGKALLDAPAEEGRLLASVAAAGAAHAYLLTEKEDDK
>NZ_CP029191.1|WP_150186509.1|5956213_5956699_-|DUF4439-domain-containing-protein
MSDTKDSPEPSKDDELKALQAALGAEHAAVYGYGVVGGRIGDQRRTEARTAYDAHRARRDELQRAVRDLGGEPQSADAAYSLPFPVPDAAAAVRLATELEDRVAGVYSDLVRASSGTRRGTAALALREAAVRAARWRGGSVAFPGLAERSTPSSAPATPQA
>NZ_CP029191.1|WP_150186508.1|5955286_5956186_-|kinase
MALEPPQRLVTALGETAQDGDDWLDKLPGAAEKAVALRELTVERVHVPGGRSSLVLMVRRADDTPAVLKLVPPRSRPESERAALAHWNGLGAARLLDPECADGALLMERLHRDVSVRSLPEAKALLEAAGTLRRLWVKPPADHRFETVAERTGRQAEAMRTSAAADAEVAPLVDAALAARDELLAADVEPRLLHGTFRQSKVLAGDRLPWLAVGPDPVVGEPAFDLARLVRDRVEDLIASPSGASITRRRVKKLAESLEVEQERLRGWTLFRAVESGVRARRVGRAQDAELLLEFADWL
>NZ_CP029191.1|WP_150186507.1|5953517_5955212_+|proline--tRNA-ligase
MAQVQRMSRLMAKTLRDDPADAEVLSHKLLVRAGYVRRTAAGVWSWLPLGKKVLANVERVVREEMDEMGGQEVTLPALLPKEPYEATGRWTEYGAELFRLNDRKGGDYLLGPTHEEIFTLLVKDQCTSYKDLPVILYQIQTKYRDEARPRAGILRGREFLMKDSYSFDTEDEGLAQSYALHRAAYQKIFQRLGLDYRICAATAGAMGGSKSEEFLAPAAAGEDTFADCPNCDYAANTEAVSFALKPVDAADVPAAEEIPTPDTPTIETLAAHLGVPASATLKNLLVKVDGEIVAVGVPGDREVDMDKVEAHFAPAAVELVTAADFEGRADLVRGYVGPQGLEKVQYIADPRVAPGTAWITGANKDGVHAKNVVAGRDFEVDTYVDVVVVQEGDPCPNCGTGLKLDRAIEIGHIFQLGRKYADAFQLDVLGQNGKPVRVTMGSYGIGVSRAVAALAEQHADDKGLIWPEEIAPADVHVVAAGKALQTELALEVSDKLAAAGVRVLVDDRPGVSPGVKFTDSELIGVPKILVAGRRSADGVVELKDRRTGEREELTVDEAIARLTA
>NZ_CP029191.1|WP_150186506.1|5952889_5953441_+|GNAT-family-N-acetyltransferase
MTDDVVIAPLDLAARVDDALSVQAHAFGLSDDEVAVRRQIVLRHLTYPGARAFGATTPDDRLVGFVYGMPNSRGHWWSTVVEPYLRSQNLDGWLDDSFVITELHVHPGHQNRGIGRALITTITEGVPEPRSILSAIDVESPARGLYRSLGYADLARRVLFPSAARPYAVMGAPLPLPAPPKRF
>NZ_CP029191.1|WP_150172827.1|5952011_5952860_+|GNAT-family-N-acetyltransferase
MLTQTTTRVLEPSDLDAALAVLDREPVANAFVTARVQVAGLDPWRLGGEMWGWYEDGMLASLCYAGANLVPICATPRAIRGFADRARRAGRRCSSIVGPAESTARLWRLLEPSWGPAREVRAQQPLMVTDRLPDDVVPDPYVRRVRKDEMETIMPACVAMFTEEVGVSPLAGDGGLLYQARVAELVGSGRSFARLDRDGKVVFKAEIGAATSQACQIQGVWVAPEYRGRGLAAPGMAAVLRYALADIAPVASLYVNDFNTAARAAYRRVGFQEVGAFMSVLF
>NZ_CP029191.1|WP_150186505.1|5950499_5951657_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MTAVSLGIPSVPTKLADRRVSRKIQVGTVAVGGDAPVSVQSMTTTRTSDIGATLQQIAELTASGCQIVRVACPTQDDADALSVIAKKSQIPVIADIHFQPKYVFAAIDAGCAAVRVNPGNIKQFDDKVKEIARAAKDAGTPIRIGVNAGSLDARLLKKYGKATPEALVESALWEASLFEEHDFRDIKISVKHNDPVVMVNAYRQLAAQCDYPLHLGVTEAGPAFQGTIKSAVAFGALLSEGIGDTIRVSLSAPPAEEIKVGIQILESLNLRQRRLEIVSCPSCGRAQVDVYKLAEEVTAGLDGMEVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPESKIVETLIDEAMKIAEQMEKDGVASGEPTISVAG
>NZ_CP029191.1|WP_150172847.1|5962855_5963149_+|DUF503-family-protein
MYVGTLSFDLLLGDVHSLKEKRSVVRPIVAELQRKYAVSAAEVGGQNLHRRAEIGLAVVSGDAGHLHDVLDRCERLVAARPEVELLSVRRRLHGDDD
>NZ_CP029191.1|WP_150186515.1|5963199_5963661_+|30S-ribosome-binding-factor-RbfA
MADNARAKRLADLIREVVAQKLQRGIKDPRLGTHVTITDTRVTGDLREATVFYTVYGDDEDRAAAAAGLESAKGVLRSAVGQAAGVKFTPTLSFVADALPDNARAIEDLLDKARMSDAKVREVSAGAEFAGGADPYRKPEDESDEETDGDARA
>NZ_CP029191.1|WP_150186516.1|5963657_5964563_+|tRNA-pseudouridine(55)-synthase-TruB
MSNSGTTPDGLVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTEKEYLGTIRLGQNTLTDDAEGEITSSTDASKVTREAVDKGIAKLSGDIMQVPSKVSAIKIDGKRSYARARKGEDFEIPARPVTISAFTVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAIARDLGADLGVGGHLTALRRTRVGPYKLDTAKTLDQLQEELTVMPVAEAAGRAFPRWDVDEKRGRLLLNGVRIDMPEEYAGVGAVAVFDPEGRFLVLAEESRGKAKSLAVFA
>NZ_CP029191.1|WP_150188496.1|5964857_5968358_+|trypsin-like-peptidase-domain-containing-protein
MVRVCDLAGRPRGTGFAADEHGTVVTSHEAVDGLARIVLHAADGRTCVVPAEAVAELPGTDLALVRTEGLGLRPLPVSARASVATGTYVRIAAGGWREARVLGTSPVTYTATDRFHAVGAALELAIGTDGADALRLGGGAAGGPVVDAATGAVLAVLGTALRPRHGSGPSFEDAHRPAGFAVPLLEAAATDPGGPLAELVARNAATVPAYGEDLNLAGALHLTATSTGSDGPPVPLREPVERPSLAREFTTFMTGTARVLGLVGDPGTGRTTELAALAARRAQGTEPAPTLWLRGADLRGTDASVADAVERALDRAGRILTASAGDERTLGDVGADRLARLVRDAGRPLLLLLDGPEEMPAVLAHRLAQWSAGTARWLRDTDTRLVIACRVEYWEQAGAHFDAASLHAAAGGAELPGCVRLGDLPEPQASEARALHGIPDDALAPADARHPLALRLLGEVRGATPTAPPPGTPTREEVFSAYLHLLCLRVAVRLAAANGLRGSAVRRLAARVAGQVHEAARRCLGPGHGELDRASFEETFPWGARLHGCTGWASAVLTEGLLVPAGPGYRFAHEELADWLQGTHLDVDGALEALVHRHRGRGRGGPVVPEQRRRKPGSTSAPAPARPLPVPRHRIGPVIQALLLLGRQRGAAELASRLGELTDALVEFGREGEGGAEAEGPGGGGTGDSGDSGDAVWWAGHLLGEVLLRVPDATPYLAVLEPLAVRGEFGTAFWLRLPLAEADRFSLLRRLVVHDGPPGSPDRRLDAVAALLRADPANVQPLLARWFADERPLDAAPDATVASAAQALLHTHRHRAIDDLTEALVDCAHARADELLAALAEEEPAALCRAVDRWARDERPARRVAAAAYALRAAPHATTPAEHALLRCAALALLAHPADDALHGAALALLVRDPQTRATHLPDALRRFSAGDPRLPASALAAALTTHPDPVLDAFRTRLHASDPAADAILCCLADVTTPTLARRVATLVHDLLEARPEAAAPAVAYIDRRLEHGPDVRPVLFPLVAGLLHSRHVQVRAALAPVLAAPGTDASRALRGELLDVLLSQERDAAVLESVLRAVVLGAAECGGDRTRERVHRTALLLVRTPEGASRCDRCLVELARGGRPGFAALLIGWLTDAPQDWAALVGPSALRVLENLAGGVSVPA
>NZ_CP029191.1|WP_150186517.1|5968512_5969466_+|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWRGLEDIPQDWGRSVVTIGSYDGVHRGHQLIIGRAVERARELGVPAVVVTFDPHPSEVVRPGSHPPLLAPHHRRAELMAELGVDALLILPFTTEFSKLSPADFVVKVLVDKLHARVVVEGPNFRFGHKAAGNVDFLAELGGTYDYEVDVVDLYVSGEAGGGEPFSSTLTRRLIAEGDVTGAAESLGRPHRVEGVVVRGAQRGRELGFPTANVETLPHTAVPADGVYAGWLHAQGEAMPAAISVGTNPQFDGTERTVEAYAIDRVGLDLYGLHVAVDFLAFVRGQAKFDTIDSLLVAMADDVKRCGELVAAAGRS
>NZ_CP029191.1|WP_150188498.1|5969795_5970761_-|ATP-binding-cassette-domain-containing-protein
MLTAAGLHIAFPGRRGGPTARAVDGVDLDIKGGEIVALVGESGCGKTTLARSLLGLVPPTSGKVTFGGEPLNYSGRALKAYRKRVQLVLQDPSGSLNPRHTVYDAVAEGLRIHGYRGDERAAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLEPELIVADEPVASLDASVRGEILALLLRLRDELNLSALVVTHDLGLAWNIADRVAVMYLGRIVETGTVEEVLTSPQHPYTQALLSVLPEADGDPVVLTGEPPDPSRIPGGCRFHARCQVLASGEAARTGVADRCRGEDLPVLSGAGETQVACHWAAARS
>NZ_CP029191.1|WP_150188497.1|5970862_5971882_-|ATP-binding-cassette-domain-containing-protein
MTEASPRRLLDVRDLEVTYANGAAAVRGVNLHVEAGQKLGVAGESGCGKSTLALALLRLLPAGTKVSGEILLDGEDVLTMKWGRVRAVRWAGASIVFQGAMHSLNAVHRIGDQIAEPILLHKKATQAGAKTKVGELLEHVGLPAARAEAYPHELSGGQRQRVMIAMALACDPRLIIADEPTTALDVMIQAQILRLIEQLVSEQDLGLMMISHDLAVLSDTCDRLAVMYAGRVVEEGPASEVYENARHPYGKALSAAFPRIGDITSRFAPRGLPGDPPDPSALPTGCTFHPRCPVALDTCATEDQALRDAGPHHRAACVHAGAPLPAQPTSAPATAERTP
>NZ_CP029191.1|WP_150186518.1|5971920_5972871_-|ABC-transporter-permease-subunit
MTTESAPTDPVPATHTPTAAKSARSLAWTRRRHSAARFWREYRTHRAGLVGLAVLVLIALAAVFAPLLVGSDAQSVTGAPGDPMESPSGEFPLGTDQFGRDLLGLLVYGARMSLTVGLLAAVLSVAIGTLVGITAGHFKGWYATVIMRITDWFLVMPTLVLAIALAAVMSGTIWTIILAIGVTTWPTTARLVRAQTLAVESRPYIERAQALGGGHGHIMSRHVLPNVMPLVLAQTTLVISGAILTEATLAFLGLGDPTSVSWGGLLQDAREAGAVSAGHWWYLAPPGLAIAVVALAFTLCGRAVESVLNPRLGASR
>NZ_CP029191.1|WP_150186519.1|5972867_5973962_-|ABC-transporter-permease-subunit
MTADSNPALLDTEGPKGPGADGDPAAAGAASARGPRDRNTRAYLLYVAGKIGGAVVSLFAVLVTSFFLFRLIPGDPVKQMTGGKRVSAEQLAAMREEFGLDKSVMAQFWDYTGNVLSGDFGTSYQFHAPVMDKITEALPATLLLTGTAYVLYTIIGIWLGTRTAWRNGRLGDRFNTGLALTLYSVPSFWLGLLLIITFSVGIGPIPGMFPTGGLESGGETGFAYVVDVAHHMVLPVVTLVAVGYAQTLLVMRSSLLDEMGSDYLTTARAKGLRDDLVRRRHAVPNAMLPTVTLMFVNLGTVVAGAILVETVFSWPGLGGLFYQALSVPDLPLVQGLFFVFSVAVILMNTLADVIYPLLDPRVGR
>NZ_CP029191.1|WP_150186520.1|5973965_5975885_-|ABC-transporter-substrate-binding-protein
MDTQDQHGRSAAPRREATPRHQCHSRRRPHPHRPLKLVLAGGVAAFTLTAGLATPLNPGPQLAQAEDGGGKDVLTVAVAQSVDSLSPFLAQRLLSTSIHRLTYEYLTNYDAKDNKAIPGFAKKWESSDDKLTWTYTIRDDSKWSDGKQATAEDAAWTFNKVMSKEGTATANSNFVTNFKKVTAPSPTKLVIELKKPQATMAALDVPIVPKHVWEKVDDISKFNNDKDFPIVGNGPFTLTDYKVDQYVRLKANKDFWRGAPKFDELVFKTYKDQDAAVSALRKGEVSFVAGQPALTPAQAESLKNEDNIKVNEGPGRRFFALATNPGAKTLDGKKFGDGHPALLDKRVRQALFLSVDREALVEKVFQGHAVEGAGYIPPRFSEYAWKPSAEQELKYDPKRAAELLDEAGYKENSDGKRVGKDGKPLDFRILCHATDPNDKAVGKYLKEWWGELGIGLKVNCLDDVSVPWYAGEYDLAFDGWSVNPDPDFVLGIHTCAALPKKAKESAATDNFICDKKFDSLYDKQLAEYDPGKRADIVKQMESWLYDSGYMNVLLYPNAVEAYRTDQIKSITTMPTAAGNIYGQDGYWSWWSAVPADGKSSSKDGSSTGVIIGIAAAAVVLVGGGVLFALRRRSTAEDRE

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Crispr_ID: NZ_CP029191_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_17

5969515-5969622

Orphan

Consensus_repeat	Method
TCGCGCAGTTCCCCGCGCCCCTTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_17

>merge|NZ_CP029191|17|5969515-5969622|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTTGAACGCACTCGCCGTGGGGTGCCGGGGTCTTTACGCGGCTGCGGGCCGGTGGGGGCTGGTCGCGCAGTTCCCCGCGCCCCTGAAA

>NZ_CP029191|17|16|5969515-5969622|CRISPRCasFinder
TCGCGCAGTTCCCCGCGCCCCTTGAA	CGCACTCGCCGTGGGGTGCCGGGGTCTTTACGCGGCTGCGGGCCGGTGGGGGCTGG
TCGCGCAGTTCCCCGCGCCCCTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150186520.1\|5973965_5975885_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173853
NZ_CP029191.1\|WP_150186519.1\|5972867_5973962_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP029191.1\|WP_150186511.1\|5957529_5958027_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP029191.1\|WP_150188496.1\|5964857_5968358_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP029191.1\|WP_150186510.1\|5956695_5957262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150186521.1\|5976339_5979849_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223531
NZ_CP029191.1\|WP_150188497.1\|5970862_5971882_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP029191.1\|WP_150186523.1\|5980630_5980936_-\|DUF397-domain-containing-protein	unknown	unknown	gnl\|CDD\|377231
NZ_CP029191.1\|WP_150186524.1\|5982170_5983568_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|224437
NZ_CP029191.1\|WP_150186518.1\|5971920_5972871_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP029191.1\|WP_150172847.1\|5962855_5963149_+\|DUF503-family-protein	unknown	unknown	gnl\|CDD\|377364
NZ_CP029191.1\|WP_150186512.1\|5958029_5959019_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP029191.1\|WP_055568703.1\|5983785_5984073_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP029191.1\|WP_150186516.1\|5963657_5964563_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP029191.1\|WP_150186515.1\|5963199_5963661_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP029191.1\|WP_150186513.1\|5959151_5959442_+\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP029191.1\|WP_150186522.1\|5980125_5980398_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371417
NZ_CP029191.1\|WP_150186517.1\|5968512_5969466_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP029191.1\|WP_150186514.1\|5959588_5962699_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP029191.1\|WP_150188498.1\|5969795_5970761_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223521

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150186520.1\|5973965_5975885_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.63147e-111
NZ_CP029191.1\|WP_150186519.1\|5972867_5973962_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.58814e-113
NZ_CP029191.1\|WP_150186511.1\|5957529_5958027_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.55421e-46
NZ_CP029191.1\|WP_150188496.1\|5964857_5968358_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	8.47376e-08
NZ_CP029191.1\|WP_150186521.1\|5976339_5979849_-\|AAA-family-ATPase	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	2.63813e-47
NZ_CP029191.1\|WP_150188497.1\|5970862_5971882_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.17953e-143
NZ_CP029191.1\|WP_150186523.1\|5980630_5980936_-\|DUF397-domain-containing-protein	gnl\|CDD\|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	2.18418e-08
NZ_CP029191.1\|WP_150186524.1\|5982170_5983568_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|224437	COG1520, COG1520, FOG: WD40-like repeat [Function unknown].	5.38769e-06
NZ_CP029191.1\|WP_150186518.1\|5971920_5972871_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.25031e-90
NZ_CP029191.1\|WP_150172847.1\|5962855_5963149_+\|DUF503-family-protein	gnl\|CDD\|377364	pfam04456, DUF503, Protein of unknown function (DUF503). Family of hypothetical bacterial proteins.	1.25283e-36
NZ_CP029191.1\|WP_150186512.1\|5958029_5959019_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	0
NZ_CP029191.1\|WP_055568703.1\|5983785_5984073_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.85015e-52
NZ_CP029191.1\|WP_150186516.1\|5963657_5964563_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	9.17375e-163
NZ_CP029191.1\|WP_150186515.1\|5963199_5963661_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.53458e-47
NZ_CP029191.1\|WP_150186513.1\|5959151_5959442_+\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.40112e-25
NZ_CP029191.1\|WP_150186522.1\|5980125_5980398_-\|hypothetical-protein	gnl\|CDD\|371417	pfam11203, EccE, Putative type VII ESX secretion system translocon, EccE. EccE is a family of largely Gram-positive bacterial transmembrane componenets of the type VII secretion system characterized in Mycobacterium tuberculosis, systems ESX1-5. Translocation of virulent peptides through the membranes is thought to be mediated via a complex that includes EccB, EccC, EccD, EccE, and MycP. EccB, EccC, EccD, and EccE form a stable complex in the mycobacterial cell envelope.	1.13315e-06
NZ_CP029191.1\|WP_150186517.1\|5968512_5969466_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.10079e-147
NZ_CP029191.1\|WP_150186514.1\|5959588_5962699_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP029191.1\|WP_150188498.1\|5969795_5970761_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.0023e-120

>NZ_CP029191.1|WP_150186517.1|5968512_5969466_+|bifunctional-riboflavin-kinase/FAD-synthetase
MQRWRGLEDIPQDWGRSVVTIGSYDGVHRGHQLIIGRAVERARELGVPAVVVTFDPHPSEVVRPGSHPPLLAPHHRRAELMAELGVDALLILPFTTEFSKLSPADFVVKVLVDKLHARVVVEGPNFRFGHKAAGNVDFLAELGGTYDYEVDVVDLYVSGEAGGGEPFSSTLTRRLIAEGDVTGAAESLGRPHRVEGVVVRGAQRGRELGFPTANVETLPHTAVPADGVYAGWLHAQGEAMPAAISVGTNPQFDGTERTVEAYAIDRVGLDLYGLHVAVDFLAFVRGQAKFDTIDSLLVAMADDVKRCGELVAAAGRS
>NZ_CP029191.1|WP_150188496.1|5964857_5968358_+|trypsin-like-peptidase-domain-containing-protein
MVRVCDLAGRPRGTGFAADEHGTVVTSHEAVDGLARIVLHAADGRTCVVPAEAVAELPGTDLALVRTEGLGLRPLPVSARASVATGTYVRIAAGGWREARVLGTSPVTYTATDRFHAVGAALELAIGTDGADALRLGGGAAGGPVVDAATGAVLAVLGTALRPRHGSGPSFEDAHRPAGFAVPLLEAAATDPGGPLAELVARNAATVPAYGEDLNLAGALHLTATSTGSDGPPVPLREPVERPSLAREFTTFMTGTARVLGLVGDPGTGRTTELAALAARRAQGTEPAPTLWLRGADLRGTDASVADAVERALDRAGRILTASAGDERTLGDVGADRLARLVRDAGRPLLLLLDGPEEMPAVLAHRLAQWSAGTARWLRDTDTRLVIACRVEYWEQAGAHFDAASLHAAAGGAELPGCVRLGDLPEPQASEARALHGIPDDALAPADARHPLALRLLGEVRGATPTAPPPGTPTREEVFSAYLHLLCLRVAVRLAAANGLRGSAVRRLAARVAGQVHEAARRCLGPGHGELDRASFEETFPWGARLHGCTGWASAVLTEGLLVPAGPGYRFAHEELADWLQGTHLDVDGALEALVHRHRGRGRGGPVVPEQRRRKPGSTSAPAPARPLPVPRHRIGPVIQALLLLGRQRGAAELASRLGELTDALVEFGREGEGGAEAEGPGGGGTGDSGDSGDAVWWAGHLLGEVLLRVPDATPYLAVLEPLAVRGEFGTAFWLRLPLAEADRFSLLRRLVVHDGPPGSPDRRLDAVAALLRADPANVQPLLARWFADERPLDAAPDATVASAAQALLHTHRHRAIDDLTEALVDCAHARADELLAALAEEEPAALCRAVDRWARDERPARRVAAAAYALRAAPHATTPAEHALLRCAALALLAHPADDALHGAALALLVRDPQTRATHLPDALRRFSAGDPRLPASALAAALTTHPDPVLDAFRTRLHASDPAADAILCCLADVTTPTLARRVATLVHDLLEARPEAAAPAVAYIDRRLEHGPDVRPVLFPLVAGLLHSRHVQVRAALAPVLAAPGTDASRALRGELLDVLLSQERDAAVLESVLRAVVLGAAECGGDRTRERVHRTALLLVRTPEGASRCDRCLVELARGGRPGFAALLIGWLTDAPQDWAALVGPSALRVLENLAGGVSVPA
>NZ_CP029191.1|WP_150186516.1|5963657_5964563_+|tRNA-pseudouridine(55)-synthase-TruB
MSNSGTTPDGLVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTEKEYLGTIRLGQNTLTDDAEGEITSSTDASKVTREAVDKGIAKLSGDIMQVPSKVSAIKIDGKRSYARARKGEDFEIPARPVTISAFTVYDVRDAVAEDGTPVLDLVVSVVCSSGTYIRAIARDLGADLGVGGHLTALRRTRVGPYKLDTAKTLDQLQEELTVMPVAEAAGRAFPRWDVDEKRGRLLLNGVRIDMPEEYAGVGAVAVFDPEGRFLVLAEESRGKAKSLAVFA
>NZ_CP029191.1|WP_150186515.1|5963199_5963661_+|30S-ribosome-binding-factor-RbfA
MADNARAKRLADLIREVVAQKLQRGIKDPRLGTHVTITDTRVTGDLREATVFYTVYGDDEDRAAAAAGLESAKGVLRSAVGQAAGVKFTPTLSFVADALPDNARAIEDLLDKARMSDAKVREVSAGAEFAGGADPYRKPEDESDEETDGDARA
>NZ_CP029191.1|WP_150172847.1|5962855_5963149_+|DUF503-family-protein
MYVGTLSFDLLLGDVHSLKEKRSVVRPIVAELQRKYAVSAAEVGGQNLHRRAEIGLAVVSGDAGHLHDVLDRCERLVAARPEVELLSVRRRLHGDDD
>NZ_CP029191.1|WP_150186514.1|5959588_5962699_+|translation-initiation-factor-IF-2
MAKVRVYELAKEFGVESKVVMAKLQELGEFVRSASSTIEAPVVRKLTDALNQGGGNGKSAAKPAAPRKQAAPKPASPAAPATPSPAQAARPGPAAPKPPAPKPAAAEKPASPATPGPRPTPGPKPPAPKPAPASPAPTAPEFTAPPAAPAAPAAPQAPRPGARPGAPKPGGRPAPGQGQGQGQGRGDRGDRQGAPRPGGQGGAPRPGGARPSGPRPGNNPFTSGGSTGMARPQAPRPGGAPRPGGQGGQGGPGGAPRPQGQGGPGGAPRPQGQGGARPTPGGMPRPQGGAPRPGGGPAGNRPNPGMMPQRPAAGPRPGGGPGGGRGPGGGGRPGGGGGRPGGGGFAGRPGGGGGGFAGRPGGPGGGGAGRPGGGGGFGGRPGFGGRPGGPGARGGTQGAFGRPGGPARRGRKSKRQRRQEYEAMQAPSVGGVMLPRGNGQTVRLSRGASLTDFAEKINANPASLVGVMMNLGEMVTATQSVSDETLKLLAEEMNFVLEIVSPEEEDRELLESFSIEFGEDEGGEDMLVSRPPVVTVMGHVDHGKTRLLDAIRKTNVVAGEAGGITQHIGAYQVATEVNGEERAITFIDTPGHEAFTAMRARGAKSTDIAILVVAANDGVMPQTIEALNHAKAADVPIVVAVNKIDVEGADPTKVRGQLTEFGLVAEEYGGDTMFVDISARQGQNIEQLLEAVVLTADASLDLRANPEQDAQGIAIEAHLDKGRGAVATVLVQRGTLRVGDTMVAGDAYGRVRAMLDDKGENVEEATPSTPVLVLGLTNVPGAGDNFLVVDEDRTARQIAEKRAARERNAAFAKRTRRVSLEDLDQVLKAGLVQDLNIIIKGDASGSVEALESSLLQLDVGEEVDIRVLHRGVGAVTESDIDLAMGSDAIVIGFNVRAAGRAAQMAEREGVDVRYYSVIYQAIEEIEAALKGMLKPEYEEVELGTAEIREVFRSSKLGNIAGVLIRSGEVKRNTKARLLRDGKVIAEGLNIEGLRRFKDDVTEIREGFEGGINLGNFNDIKIDDVIATYEMREKPRG
>NZ_CP029191.1|WP_150186513.1|5959151_5959442_+|DUF448-domain-containing-protein
MSGRTHARACPERTCVGCRERAAKSDLLRIVRKEGACVPDPRGTLPGRGAYVHPALVCLDLAVRRRAFPRAFRAQGPLDTEALRRAVETVAQEATP
>NZ_CP029191.1|WP_150186512.1|5958029_5959019_+|transcription-termination/antitermination-protein-NusA
MDIDMSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSHRRARVKLDRESGHVTVWAKEEADDLEEGQEPREFDDTPSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTGVVQQGRDPKNVLVDIGKLEAILPVQEQVPGEQYPHGMRLRSYVVRVAKGVRGPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGACIGPMGSRVRNVMGELNGEKIDIVDWSDDPAEMVAHALSPARVSKVEVVDLGARSARVTVPDYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPADQ
>NZ_CP029191.1|WP_150186511.1|5957529_5958027_+|ribosome-maturation-factor-RimP
MSTTQSERLRQLLEPLVTSQDLDLEEIEVASVGRKRVLRVVIDSEDGVDLDQIADVSRALSAKLDETDAMGEGEYDLEVGSPGAERALTERRHYLRAVDRLVKFTLTEGGEVTARILTVDDEGLDLEVPGVKGRKPTSRRLAFDEIEKARVQVEFNRKDKKEEEA
>NZ_CP029191.1|WP_150186510.1|5956695_5957262_-|hypothetical-protein
MPSYRTAPRSRPGPRRRSLLAGAAGVASAALLAGCSDSADSDPDGRPSAARRLRAAAAKDSRELLRRYDAVLAAHPSLDGRLGPLRGEVKRHVEAFEKSTGPTGTDGKTPSPAASGPAGGSASKAPSPSVASDPKKAVRDLAEAERELADRRGKALLDAPAEEGRLLASVAAAGAAHAYLLTEKEDDK
>NZ_CP029191.1|WP_150188498.1|5969795_5970761_-|ATP-binding-cassette-domain-containing-protein
MLTAAGLHIAFPGRRGGPTARAVDGVDLDIKGGEIVALVGESGCGKTTLARSLLGLVPPTSGKVTFGGEPLNYSGRALKAYRKRVQLVLQDPSGSLNPRHTVYDAVAEGLRIHGYRGDERAAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLEPELIVADEPVASLDASVRGEILALLLRLRDELNLSALVVTHDLGLAWNIADRVAVMYLGRIVETGTVEEVLTSPQHPYTQALLSVLPEADGDPVVLTGEPPDPSRIPGGCRFHARCQVLASGEAARTGVADRCRGEDLPVLSGAGETQVACHWAAARS
>NZ_CP029191.1|WP_150188497.1|5970862_5971882_-|ATP-binding-cassette-domain-containing-protein
MTEASPRRLLDVRDLEVTYANGAAAVRGVNLHVEAGQKLGVAGESGCGKSTLALALLRLLPAGTKVSGEILLDGEDVLTMKWGRVRAVRWAGASIVFQGAMHSLNAVHRIGDQIAEPILLHKKATQAGAKTKVGELLEHVGLPAARAEAYPHELSGGQRQRVMIAMALACDPRLIIADEPTTALDVMIQAQILRLIEQLVSEQDLGLMMISHDLAVLSDTCDRLAVMYAGRVVEEGPASEVYENARHPYGKALSAAFPRIGDITSRFAPRGLPGDPPDPSALPTGCTFHPRCPVALDTCATEDQALRDAGPHHRAACVHAGAPLPAQPTSAPATAERTP
>NZ_CP029191.1|WP_150186518.1|5971920_5972871_-|ABC-transporter-permease-subunit
MTTESAPTDPVPATHTPTAAKSARSLAWTRRRHSAARFWREYRTHRAGLVGLAVLVLIALAAVFAPLLVGSDAQSVTGAPGDPMESPSGEFPLGTDQFGRDLLGLLVYGARMSLTVGLLAAVLSVAIGTLVGITAGHFKGWYATVIMRITDWFLVMPTLVLAIALAAVMSGTIWTIILAIGVTTWPTTARLVRAQTLAVESRPYIERAQALGGGHGHIMSRHVLPNVMPLVLAQTTLVISGAILTEATLAFLGLGDPTSVSWGGLLQDAREAGAVSAGHWWYLAPPGLAIAVVALAFTLCGRAVESVLNPRLGASR
>NZ_CP029191.1|WP_150186519.1|5972867_5973962_-|ABC-transporter-permease-subunit
MTADSNPALLDTEGPKGPGADGDPAAAGAASARGPRDRNTRAYLLYVAGKIGGAVVSLFAVLVTSFFLFRLIPGDPVKQMTGGKRVSAEQLAAMREEFGLDKSVMAQFWDYTGNVLSGDFGTSYQFHAPVMDKITEALPATLLLTGTAYVLYTIIGIWLGTRTAWRNGRLGDRFNTGLALTLYSVPSFWLGLLLIITFSVGIGPIPGMFPTGGLESGGETGFAYVVDVAHHMVLPVVTLVAVGYAQTLLVMRSSLLDEMGSDYLTTARAKGLRDDLVRRRHAVPNAMLPTVTLMFVNLGTVVAGAILVETVFSWPGLGGLFYQALSVPDLPLVQGLFFVFSVAVILMNTLADVIYPLLDPRVGR
>NZ_CP029191.1|WP_150186520.1|5973965_5975885_-|ABC-transporter-substrate-binding-protein
MDTQDQHGRSAAPRREATPRHQCHSRRRPHPHRPLKLVLAGGVAAFTLTAGLATPLNPGPQLAQAEDGGGKDVLTVAVAQSVDSLSPFLAQRLLSTSIHRLTYEYLTNYDAKDNKAIPGFAKKWESSDDKLTWTYTIRDDSKWSDGKQATAEDAAWTFNKVMSKEGTATANSNFVTNFKKVTAPSPTKLVIELKKPQATMAALDVPIVPKHVWEKVDDISKFNNDKDFPIVGNGPFTLTDYKVDQYVRLKANKDFWRGAPKFDELVFKTYKDQDAAVSALRKGEVSFVAGQPALTPAQAESLKNEDNIKVNEGPGRRFFALATNPGAKTLDGKKFGDGHPALLDKRVRQALFLSVDREALVEKVFQGHAVEGAGYIPPRFSEYAWKPSAEQELKYDPKRAAELLDEAGYKENSDGKRVGKDGKPLDFRILCHATDPNDKAVGKYLKEWWGELGIGLKVNCLDDVSVPWYAGEYDLAFDGWSVNPDPDFVLGIHTCAALPKKAKESAATDNFICDKKFDSLYDKQLAEYDPGKRADIVKQMESWLYDSGYMNVLLYPNAVEAYRTDQIKSITTMPTAAGNIYGQDGYWSWWSAVPADGKSSSKDGSSTGVIIGIAAAAVVLVGGGVLFALRRRSTAEDRE
>NZ_CP029191.1|WP_150186521.1|5976339_5979849_-|AAA-family-ATPase
MNSDRDEIRRGWDSPVDDQSDAESAAETTGEFTIDYAPPAWYTQNASGSAGETPSAAPVSTSGALDSSAASDSSAAADSSGSKESGSEESDSSGSGSGVAGPAAASAPAAPAPAMPSFAAPPPPPLPLGPPSAGVPGVVPKLPVGSGFQPAGSGAASDSSDASASVDDAEETGASASAGSSAVDVESPDAPSSVPPVASGGGASDWSGALAGPAASVHVTGVVPKKDVDALVEAEEAKEQEVEASPGAASASADSDVVEPAGESLGGGDLESGATMRFSARALKREFEELAAAAGRDVEAQAGAEAERSDVASASSGVASADSASSGAVSSGAASSGAASSGVDESGVVSSDDVGESGASAESGESADGSVDHEVSSSGSGGADDVVQDAVPSAWPPPPSPQDVLPPLPPAFQPAAPTAAPQWPVPAPDAQQPAAGQTPEAQVQPAAPVQPQAPQPAPGTWPPTAPAPAAAPGAPFAAPVPPAQDSTPATPATPAAPAAPQGAYGFPQTAPAAAPGTPFTAPPPPAQNSAPPAPATPEAPQGAYGFPQTAPAATPAPPAQNSNPNPTPAPAAPQPPQSGYGFPQSGAPAPGVPPQNFAPAPTAPVTPESAGPGSGYGFPQAPAPQGQQAPQPPVQPVQPAQPFPAQPQVPGQQAVPGAQPLSNQQPFPNQPLAPQQQAAPQQQAQAQPQAPAQPQPHVPAQAQPPAQPYAPQQPQQPQQPQAPVDPRTGAAWPQAVQHDQRERTNPGAPLGYTAAVELSSDRLLRNTKPKAKSSRPAGGSRFKLGGKKEEAERQRKLELIRTPVLSCYRIAVISLKGGVGKTTTTTALGSTLATERQDKILAIDANPDAGTLGRRVRRETGATIRDLVQAIPYINSYMDIRRFTSQAPSGLEIIANDVDPAVSTTFNDEDYRRAIDVLGKQYPIILTDSGTGLLYSAMRGVLDLADQLIIISTPSVDGASSASTTLDWLSAHGYADLVSRSITVISGVRETGKMIKVDDIVSHFETRCRGVVVIPFDEHLAAGAEVDLDMMRPKVREAYFNLSAMVAEDFVRAQQQQGLWTSDGNPPPHLAPPMPGQQVSQASPQAQAQAQSQPYAPQQPQPYAPQQPQPQPQAPQPGQQPYPQQPGAPQGWQPQQPQQPQPPQQPQQAPPPAQPGAPFQQPPPPQQQQ
>NZ_CP029191.1|WP_150186522.1|5980125_5980398_-|hypothetical-protein
MVGDGTFVTAVPQALTGAPTVRITWIALTLDPQLSPEAVPARGGGLTGPRGAWCAPRTSSRVDSQESLHGCRDRIVGYRSTDGLIRRGLW
>NZ_CP029191.1|WP_150186523.1|5980630_5980936_-|DUF397-domain-containing-protein
MTDAPDTEAQEKARKEREKEELYALDISGVEWHSAPGTEKHEERVEIAYLPEGAVAMRSSLDPETVLRYTAAEWRAFVLGARDGEFDLEPSVRNGGVAATE
>NZ_CP029191.1|WP_150186524.1|5982170_5983568_+|PQQ-binding-like-beta-propeller-repeat-protein
MLVVGVLLALTAALCAGGWVLWGRGGDSTSKPDADRARPADAIRETVETPPRTPEGGTAAEYVDKPLKEGQTASAKGTWATEKIVAKGIVNVVRGFRIGDSEKVWQLKFPGPVCAVTRHVSVDGRTAVAFSGERPKKTDTGEGDTAPCDRIAVFDIDTGRKLWDKKLPGEAALAMGVNVTMTRGTVVAVSGQASVAYDMTSGRRLWTDTSVSKCADLGYAGGRGLVALVRCGDSGDPEFRVQKVAPRTGKTLWTYKVAASIKGVHLASSSPPVIAVAAGDLTSTNLIALSDDKGRQRGTIRLEGDRYVHGCDETFSAEVERCTGVVVGKRQLYMATKPREFSPETSRGPVANEIVAFDLATGNTVRKFDARPGRPMFPLRMSGDKVIAYREAATAPSAAVSLDPDSGKESLLLLFGEDEAPEMNGLEPPEVVYEHGRIFLAATSVTRSKGDGPQQWVMRGFESSG
>NZ_CP029191.1|WP_055568703.1|5983785_5984073_+|30S-ribosomal-protein-S15
MSLDAATKKQIMTEFGQKEGDTGSPEVQVALLSRRISDLTEHLKTHKHDHHSRRGLLILVGQRRRLLQYLAKKDIQRFRALVERLGIRRGAAGAK

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Crispr_ID: NZ_CP029191_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP029191_18

8035460-8035596

Orphan

Consensus_repeat	Method
GGCAGCCGCCCATCAGTGACCGCCGGCAGGTAACAGCCGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP029191_18

>merge|NZ_CP029191|18|8035460-8035596|CRISPRCasFinder
GGCAGCCGCCCATCAGTGACCGCCGGCAGGTAACAGCCGCCACCCACTACCCACCACCCACCACCCGCCACCTGTCCGCCCGTCCGCCCTCGGCCGGCAGCCGCCCATCAGCGACCGCCGGCAGGTAACAGCCGCCA

>NZ_CP029191|18|17|8035460-8035596|CRISPRCasFinder
GGCAGCCGCCCATCAGTGACCGCCGGCAGGTAACAGCCGCCA	CCCACTACCCACCACCCACCACCCGCCACCTGTCCGCCCGTCCGCCCTCGGCC
GGCAGCCGCCCATCAGCGACCGCCGGCAGGTAACAGCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029191.1\|WP_150187945.1\|8022567_8023011_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380340
NZ_CP029191.1\|WP_150181871.1\|8031856_8032069_+\|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	unknown
NZ_CP029191.1\|WP_150187944.1\|8021617_8022496_+\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|377205
NZ_CP029191.1\|WP_150187943.1\|8019742_8020909_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP029191.1\|WP_150181870.1\|8035809_8036499_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP029191.1\|WP_150181872.1\|8029904_8030525_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP029191.1\|WP_150181865.1\|8044832_8045900_+\|type-III-polyketide-synthase	unknown	unknown	gnl\|CDD\|238427
NZ_CP029191.1\|WP_150181874.1\|8026466_8027132_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182177
NZ_CP029191.1\|WP_150181866.1\|8041737_8042697_+\|cyclase	unknown	unknown	gnl\|CDD\|176870
NZ_CP029191.1\|WP_150181867.1\|8038793_8039615_+\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP029191.1\|WP_150188714.1\|8025197_8025878_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|274534
NZ_CP029191.1\|WP_150181869.1\|8037180_8038173_+\|AfsR/SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|276938
NZ_CP029191.1\|WP_150181873.1\|8028545_8029316_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180440
NZ_CP029191.1\|WP_150187952.1\|8033112_8034744_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP029191.1\|WP_150187946.1\|8023334_8024531_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367638
NZ_CP029191.1\|WP_150181868.1\|8038561_8038795_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP029191.1\|WP_150187945.1\|8022567_8023011_+\|cupin-domain-containing-protein	gnl\|CDD\|380340	cd02210, cupin_BLR2406-like, Bradyrhizobium japonicum BLR2406 and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to BLR2406, a Bradyrhizobium japonicum protein of unknown function with a cupin beta barrel domain. Proteins in this subfamily appear to align closest to RmlC carbohydrate epimerase which is involved in dTDP-L-rhamnose production, and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	6.59678e-40
NZ_CP029191.1\|WP_150187944.1\|8021617_8022496_+\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|377205	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyze 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family.	6.87505e-16
NZ_CP029191.1\|WP_150181867.1\|8038793_8039615_+\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	7.04824e-60
NZ_CP029191.1\|WP_150181870.1\|8035809_8036499_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.85294e-09
NZ_CP029191.1\|WP_150181872.1\|8029904_8030525_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.1981e-11
NZ_CP029191.1\|WP_150181865.1\|8044832_8045900_+\|type-III-polyketide-synthase	gnl\|CDD\|238427	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.	5.05237e-107
NZ_CP029191.1\|WP_150181874.1\|8026466_8027132_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|182177	PRK09975, PRK09975, DNA-binding transcriptional regulator EnvR; Provisional.	3.01497e-12
NZ_CP029191.1\|WP_150181866.1\|8041737_8042697_+\|cyclase	gnl\|CDD\|176870	cd08861, OtcD1_ARO-CYC_like, N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this gene results in the production of novel polyketides having shorter chain lengths (by up to 10 carbons) than OTC. Monodomain ARO/CYCs have a single ARO/CYC domain, and are often associated with C9-C14 first ring cyclizations, these latter domains belong to a different subfamily in the SRPBCC superfamily.	6.91453e-40
NZ_CP029191.1\|WP_150188714.1\|8025197_8025878_+\|HAD-family-phosphatase	gnl\|CDD\|274534	TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the substrate is also, like Pald, a 2-oxo-ethylphosphonate. Despite this, the genomic context of members of this family are quite distinct from PhnX, which is almost invariably associated with the 2-aminoethylphosphonate transaminase PhnW (TIGR02326), the source of the substrate Pald. Members of this clade are never associated with PhnW, but rather associate with families of FAD-dependent oxidoreductases related to deaminating amino acid oxidases (pfam01266) as well as zinc-dependent dehydrogenases (pfam00107). Notably, family members from Arthrobacter aurescens TC1 and Nocardia farcinica IFM 10152 are adjacent to the PhnCDE ABC cassette phosphonates transporter (GenProp0236) typically found in association with the phosphonates C-P lyase system (GenProp0232). These observations suggest two possibilities. First, the substrate for this enzyme family is also Pald, the non-association with PhnW not withstanding. Alternatively, the substrate is something very closely related such as hydroxyphosphonoacetaldehyde (Hpald). Hpald could come from oxidative deamination of 1-hydroxy-2-aminoethylphosphonate (HAEP) by the associated oxidase. HAEP would not be a substrate for PhnW due to its high specificity for AEP. HAEP has been shown to be a constituent of the sphingophosphonolipid of Bacteriovorax stolpii, and presumably has other natural sources. If Hpald is the substrate, the product would be glycoaldehyde (hydroxyacetaldehyde), and the associated alcohol dehydrogenase may serve to convert this to glycol.	1.55868e-07
NZ_CP029191.1\|WP_150181869.1\|8037180_8038173_+\|AfsR/SARP-family-transcriptional-regulator	gnl\|CDD\|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	3.07567e-50
NZ_CP029191.1\|WP_150181873.1\|8028545_8029316_-\|glucose-1-dehydrogenase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	3.93569e-82
NZ_CP029191.1\|WP_150187952.1\|8033112_8034744_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP029191.1\|WP_150187946.1\|8023334_8024531_-\|hypothetical-protein	gnl\|CDD\|367638	pfam03756, AfsA, A-factor biosynthesis hotdog domain. The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a HotDog domain.	9.45777e-16

>NZ_CP029191.1|WP_150187952.1|8033112_8034744_+|acyl-CoA-carboxylase-subunit-beta
MTEPSTPDTAAAQAAAAAAAEAAAAAGAGARGKAAELAAIRAQALAGPGEQATAAQHARGKLTARERIALLLDEDSFQEVEQLRRHRATGFGLEAKKPYTDGVVTGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMAIAAGAPLVSLNDGAGARIQEGVAALAGYGGIFQRNTKASGVIPQISVMLGPCAGGAAYSPALTDFVFMVRDTSQMFITGPDVIKAVTGEDVTQNGLGGADVHAETSGVCHFAYDDEETCLAEVRYLLSLLPSNNRQAPPAAACTDPAARPTPRLLEVVPADGSRPYDMHQVLAELLDDGEYLEVHERWARNIICALARLDGQVVAVVANQPQALAGVLDIEASEKAARFVQMCDAFNIPILTLLDVPGFLPGVDQEHGGIIRHGAKLLYAYCNATVPRISLVLRKAYGGAYIVMDSQSIGADLTYAWPTNEIAVMGAEGAANVIFRKQIAAAQDPGAMRARLAKEYRAELMHPYYAAERGLVDDVIDPAATREVLIRALAMLRTKHADLPSRKHGNPPQ
>NZ_CP029191.1|WP_150181871.1|8031856_8032069_+|acyl-CoA-carboxylase-subunit-epsilon
MDAAERRTALLRIERGQASDEELAAVAVTLLSLAAGRPPGGEDRPHAPRRSEAWRPPEAARAYRAPHSWR
>NZ_CP029191.1|WP_150181872.1|8029904_8030525_-|TetR-family-transcriptional-regulator
MSKQERATRTRNALILSAAELFERYGYVRASLDEISSGARVSRGALHFHFENKAAVADAVEQAAARTLRATAQAIPLGQSSAIQSLMDLSHRMVHLLHHDVVVRAGFRLNCDTGPRTPLDLRQEWQACVRRLVTRAADERALAAGVCPDGLVATVVATTVGLEVLSRANRGWLSTSSLTTFWQLLLPSVASPPTLPTLQPGGTPTP
>NZ_CP029191.1|WP_150181873.1|8028545_8029316_-|glucose-1-dehydrogenase
MTPPLKNLAGKVALITGASSGIGAAAARVFTREGARVVLVARREDRLQTLVKELRTAGADASYCTADVQSAPDMQRAVAHTLNTHGRLDAAFNNAGAAAAKTPLHLMDDATYDLIMDTNVRGVWNCLRPQISAMLTTGGGAIVNTSSVAGLVATSVAAPYIAAKHAVIGLTKVAAVEYAPHHIRVNAIAPGLTRSEMVQDWFTRHPAQEAKSKASSPQNRMAEPEEIAEAAAWLCTDHASFITGTTLTIDGGATTW
>NZ_CP029191.1|WP_150181874.1|8026466_8027132_+|TetR-family-transcriptional-regulator
MARQERAVRTRRAVLEAAAVVFAECGYSAATVSDILQVAGVTKGALYFHFDSKEALARGVLQAQVAFAGPVQELKVQEWVDAGLLLAHRLPRDPVVRAGAVLSSDPQGREHYGSAWPAWIELSAQTLAEAKERGEVLSHVVPRQTAELIVSAFHGVQLFSQLECGLADVERRISVLYDHVIPAITVPAVLARLDLAPDRGARLYAEAVSVAQPSLVPTSAG
>NZ_CP029191.1|WP_150188714.1|8025197_8025878_+|HAD-family-phosphatase
MRLVAVNIDGVLLNDSFGPVIRRLVESRGGTYGPELEQALLSQSQMVAARAAAEVLGGSAEELLAAYFEERERYVAEHPVRVLPGAQELLERLRGLGVSTVCYGGLERKHFDRYLGHLAGLFDAPGYVCTNDFRPGIREIAEDVFGLRLDQVAFIDDVARVAEAARDLGVAFIGHPSDYEDGFQRPLMERAGARHVVRSLGEIDEELLRRVDAEAATGRSWAGRGV
>NZ_CP029191.1|WP_150187946.1|8023334_8024531_-|hypothetical-protein
MSSSLVLSKDAQVTHTTSNGTTTPDGTTVGVTVGATTPDIAQTSRNARNAQDAQDAQNSTIDIAAQPAGVTDGPTTPAATTPAPATRRTGTVKAAPVPPRLTTTVPAEYVHRAALAEVFLTGCEKTGPETYILTGQWPRAHTFFNTLDGRHDHLQACETFRQTGIYLAHAEHGIPLGHHFVMQDMTMTTHPEHLTIGSTPTNLTLHTTLSRPGRSPQFTITLKITDPQGQTLSTGYGHFTCISPAAYHRMRTASNPDNTTDPTTHTLKALVHTPTHQDPSIYGRVHSRDLVLAPTHQPRTYRLNPHPAHPVLFDHDGDHLPGMVLIEAARQATYPHPPTTQLTHTQTTFHHYVELTTPTTVTATPPTHTRDTTTHTVTTHQNGRLTHTTTLTHTHSQR
>NZ_CP029191.1|WP_150187945.1|8022567_8023011_+|cupin-domain-containing-protein
MNTNTAMDDPAPQKRPLGNRVHHVRAGELDGYAAISAGTVGSKKLWMGLVENPPLSATDNHHHGASEAGIYVVSGHPVFVYHDGTKEVRVAAGPGDFFLVPPFVPHREENPDPDEPAVVVIARTTQEPIKVSVPELYQLAEGEGATE
>NZ_CP029191.1|WP_150187944.1|8021617_8022496_+|2-phosphosulfolactate-phosphatase
MDDWYLQRPHGVRFDWGPTGAERLAVDVACLVVVDVLSFTTSVTVAVDAGTRVFPYRWRDETASAFAEQMGAELAVGRRMATTTTPWSLSPAALRRAPFTPRLVLPSPNGSAIAASAGGIPVVAGALRNATAVGHWLAREGYGTTERPVAVIASGERWPDGSLRPALEDLLGAGAIIGALHGWTRAGAGAGAGAGGGGGGDGCGDGGRAGGRDRIDDAPALSPEAEMAAAAFRTAPDIATAVAEGASGRELIGGGFAEDVAVATEGDVCSAVPVLADDGAFARIDGFAGPAT
>NZ_CP029191.1|WP_150187943.1|8019742_8020909_-|hypothetical-protein
MAKNSSSSTTVPDTAWLGRGRHLGPEPEQDVRRNLIALKAAGVLDDFLDLDPAEAARSTVLHPRDESADPGPSARRLFEARWHVTDDVTVRAQLTTYDSDARRKDGDAGVTWVLAAEAEQVWDAHWPSPATMFWPDSDLVPWDHDVPSDLRLRTTNHLPKDDDELRHLLRECTRRSWYIHVVVHEAMTPDAKGQQPVSTFLPPSLRHQVVEHRGTPEQAQIADFAMKRELGVRMPRGGAVVLPTAPPHPEYDAERFTVRTVFLDGSEPTELLDRVKEFAALPRPLPAEAEQALARLRHGWHLLTPDEELTHAQDMVTKYAEALDAMTTSRDLYREAAEAAQAALAEVTGGDGTAATTAAPGQGKTDGGAGSPLSAFTKAFGRFREHKK
>NZ_CP029191.1|WP_150181870.1|8035809_8036499_+|TetR-family-transcriptional-regulator
MVQQERAARTRESLMRAAAEVFAEEGFVPATLGTISRRAGVSTGALHFHFANKHALARAVEAASLATLHRITRQAEEDHSGPLQRLAAAGNALLRALEQDIVVRAGFQLVGPAPWRTDPLDLRGAWQRWVETLLHTARRQGALAGGISPAGAAAAVVAATVGFAALGRTDPRWLAPRTLAQYWDLLLPRLTPHPATAQAATTSHPAGPAHPAVPDAPQDRSHPGGRSTT
>NZ_CP029191.1|WP_150181869.1|8037180_8038173_+|AfsR/SARP-family-transcriptional-regulator
MDIEVLGALGVRENGRSITPTAPKPRQVLALLALHADRMVPVSALTEELWGAAPPRSARTTLQTYVLQLRELIAAALERDTLPDATGTAATGTAATGAGSAPGGTGAGAGPVRSAKDVLVTMPGGYLLCSGGGASDVRTFERLAGAGYRAMDAGDCAGAARQLREALALWSGTAFADVQAGPQLQMEIKRLDESRLCALDRRIEADLRLGRHRELLAELTVLVNGYRTHESLHAQYMLALHRSGRRGEALDAYQRLRTTLVQELGLEPSARLRRLQRSILTAGHDLAAPTPAAPAAPVVPAAAPAPAPAGAGAVPGAAPPAARVRLVPTG
>NZ_CP029191.1|WP_150181868.1|8038561_8038795_-|hypothetical-protein
MGVLRTSSSVCLDCIPSPRALLGRVRGVLLSPYGPRGPGRGTGTGTGTGAGRGTGTGTGRGRGEAASGAVHALRVAR
>NZ_CP029191.1|WP_150181867.1|8038793_8039615_+|AfsR/SARP-family-transcriptional-regulator
MKIQVLGPLSAEVNGGSIVPTARKPRQILSLFALYPGQVMPVPTLMEELWGTEPPQSALTTLQTYILQLRRHLGTALGPGTPGTAKEVLATRHGGYLMQIPAEGVDVHEYDRLATEGRTAFENGDDATAADRFRRALALWRGPALVDVRVGPILEIEVMRLEESRLGTVERRIDADLRLGRHSELIAELTELTARYPQHEGLHSQAMVALYRSGRQASALEIYRKLRIRMIEGLGVEPSPQVQRLHQAMLAVDPQLDVTAGPRRTSTFDLYAA
>NZ_CP029191.1|WP_150181866.1|8041737_8042697_+|cyclase
MPGERIHRLSHTREVAAPAATLYALIADPERWPLYLPRNIYAQRLDFDGVHERVRVWALAEGQIVSWTAHRTQDPVRRQIAFRQDLLMEPATSMAGRWSVQPLDPGRCRVTLEHEFTAAPDRPQDAIWLAQVTTDNTRSTLRSLQFLAERWTRLDQLALSFAESIRVHGPAELVYGFLYDVADWPGQLPHVRRAALEEPHLGIQKVALELAADDGGPARNVAGIRICFPHAGRIVHKATVPRPLLAAHCGEWSVLPDERGVTVVAQHHALLREDHIEQVLGAGTTLAEARRRIRADLARDSRQTLQLARHHAESAIRVL
>NZ_CP029191.1|WP_150181865.1|8044832_8045900_+|type-III-polyketide-synthase
MPRLCKPSVRVPEYVITAEETLQFAESVHAGKPQLPLALRLIRNTGVLKRHIVQPIEQTLAHPGLTERNRIYEAESKKRTPEVVEEALANAEVNARDIDAIIYVSCTGFLMPSLTAWLINKMGFRSDTRQIPIAQLGCAAGGAAINRAHDFCVAHPGSNVLIVSCELCSLCYQPDMDDIGSLLSDGLFGDAVAAAVVRGTGGTGIELERNSSYLIPDTEDWISYSVRDTGFHFQLDRRVPGTMEPLAPVLRDFAAGHQWDASNLDFYIVHAGGPRILNDLAKFLDVDRKVFRHSWSTLTEYGNIASAVVLDAALRLFEEDTPMPDATGLIAGFGPGITAEMALGRWNSDTPPAAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029191_1	1.1\|157087\|49\|NZ_CP029191\|CRISPRCasFinder	157087-157135	49	NZ_CP029191.1	8035459-8035507	0	1.0
NZ_CP029191_18	18.1\|8035502\|53\|NZ_CP029191\|CRISPRCasFinder	8035502-8035554	53	NZ_CP029191.1	157040-157092	0	1.0
NZ_CP029191_5	5.1\|2986756\|40\|NZ_CP029191\|CRISPRCasFinder	2986756-2986795	40	NZ_CP029191.1	2973195-2973234	1	0.975
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NZ_CP029191.1	2117710-2117730	2	0.905

1. spacer 1.1|157087|49|NZ_CP029191|CRISPRCasFinder matches to position: 8035459-8035507, mismatch: 0, identity: 1.0

agtgggtggcggctgttacctgccggcggtcactgatgggcggctgccc	CRISPR spacer
agtgggtggcggctgttacctgccggcggtcactgatgggcggctgccc	Protospacer
*************************************************

2. spacer 18.1|8035502|53|NZ_CP029191|CRISPRCasFinder matches to position: 157040-157092, mismatch: 0, identity: 1.0

cccactacccaccacccaccacccgccacctgtccgcccgtccgccctcggcc	CRISPR spacer
cccactacccaccacccaccacccgccacctgtccgcccgtccgccctcggcc	Protospacer
*****************************************************

3. spacer 5.1|2986756|40|NZ_CP029191|CRISPRCasFinder matches to position: 2973195-2973234, mismatch: 1, identity: 0.975

agcggccgtcacggtctggggcgggtgagctgctttcgtt	CRISPR spacer
agcggccgtcacggtctggggcgggtgagctgctctcgtt	Protospacer
**********************************.*****

4. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to position: 2117710-2117730, mismatch: 2, identity: 0.905

cgggggcggcctgggcctggg	CRISPR spacer
cgggggcggccggggcctcgg	Protospacer
*********** ****** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	826730-826750	0	1.0
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	428535-428555	0	1.0
NZ_CP029191_14	14.1\|5472153\|21\|NZ_CP029191\|CRISPRCasFinder	5472153-5472173	21	NZ_CP025431	Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence	83003-83023	1	0.952
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NZ_CP049912	Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence	5950-5970	1	0.952
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NZ_CP039991	Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence	169513-169533	1	0.952
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	NZ_CP010862	Marinovum algicola DG 898 plasmid pMaD7	78984-79004	1	0.952
NZ_CP029191_14	14.3\|5472252\|21\|NZ_CP029191\|CRISPRCasFinder	5472252-5472272	21	MK016490	Arthrobacter phage Anjali, complete genome	13918-13938	1	0.952
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_013531	Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence	36170-36199	4	0.867
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	629966-629995	4	0.867
NZ_CP029191_10	10.1\|4254393\|29\|NZ_CP029191\|CRISPRCasFinder	4254393-4254421	29	NZ_CP016820	Rhodococcus sp. p52 plasmid pDF02, complete sequence	124518-124546	5	0.828
NZ_CP029191_10	10.1\|4254393\|29\|NZ_CP029191\|CRISPRCasFinder	4254393-4254421	29	NZ_CP016820	Rhodococcus sp. p52 plasmid pDF02, complete sequence	238188-238216	5	0.828
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	76970-77001	6	0.812
NZ_CP029191_8	8.1\|3725937\|27\|NZ_CP029191\|CRISPRCasFinder	3725937-3725963	27	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	627238-627264	6	0.778
NZ_CP029191_8	8.1\|3725937\|27\|NZ_CP029191\|CRISPRCasFinder	3725937-3725963	27	KX585251	Mycobacterium phage Waterfoul, complete genome	34255-34281	6	0.778
NZ_CP029191_8	8.1\|3725937\|27\|NZ_CP029191\|CRISPRCasFinder	3725937-3725963	27	MH576966	Mycobacterium phage Thyatira, complete genome	36361-36387	6	0.778
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	251495-251524	6	0.8
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_LR134459	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence	204550-204579	6	0.8
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KT186228	Streptomyces phage Amela, complete genome	23901-23930	6	0.8
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	224425-224454	6	0.8
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	MN234183	Mycobacterium phage Antsirabe, complete genome	25084-25115	7	0.781
NZ_CP029191_13	13.1\|5185450\|33\|NZ_CP029191\|CRISPRCasFinder	5185450-5185482	33	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	59487-59519	7	0.788
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH067967	Arthrobacter sp. strain ANT_H19B plasmid pA19BH1, complete sequence	66532-66561	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_KP691638	Bifidobacterium longum subsp. longum 72B plasmid p72B, complete sequence	112-141	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_KP691633	Bifidobacterium longum subsp. longum 2-2B plasmid p2-2B, complete sequence	112-141	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_CP015236	Rhodococcus fascians D188 plasmid pFiD188, complete sequence	8078-8107	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_CP022747	Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence	131161-131190	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_006843	Bifidobacterium longum plasmid pTB6, complete sequence	106-135	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	CP000385	Mycobacterium sp. MCS Plasmid1, complete sequence	124560-124589	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_008704	Mycobacterium sp. KMS plasmid pMKMS02, complete sequence	150619-150648	7	0.767
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	50507-50536	7	0.767
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	NZ_CP029776	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence	115396-115427	8	0.75
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	201250-201279	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	303594-303623	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MK291445	Paracoccus phage vB_PyeM_Pyei1, complete genome	27426-27455	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	184059-184088	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	241394-241423	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MK524524	Streptomyces phage Caelum, complete genome	22219-22248	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_016652	Rhodococcus phage REQ2, complete genome	37273-37302	8	0.733
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_013936	Mycobacterium phage Ardmore, complete genome	39410-39439	8	0.733
NZ_CP029191_15	15.5\|5573978\|35\|NZ_CP029191\|CRT	5573978-5574012	35	MN284901	Microbacterium phage YuuY, complete genome	25102-25136	8	0.771
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_014918	Mesorhizobium ciceri biovar biserrulae WSM1271 plasmid pMESCI01, complete sequence	359393-359422	9	0.7
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	283899-283928	9	0.7
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586057	Gordonia phage Cleo, complete genome	25276-25305	9	0.7
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	132335-132364	9	0.7
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN033164	Leviviridae sp. isolate H4_Bulk_Litter_23_scaffold_696 RNA-dependent RNA polymerase (H4BulkLitter23696_000001) and hypothetical protein (H4BulkLitter23696_000002) genes, complete cds; and hypothetical protein (H4BulkLitter23696_000003) gene, partial cds	1732-1761	9	0.7
NZ_CP029191_15	15.6\|5574032\|35\|NZ_CP029191\|CRT	5574032-5574066	35	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	443941-443975	9	0.743
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	MN693051	Marine virus AFVG_25M152, complete genome	38170-38201	10	0.688
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	MN693582	Marine virus AFVG_25M154, complete genome	21447-21478	10	0.688
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	MN693500	Marine virus AFVG_25M151, complete genome	21403-21434	10	0.688
NZ_CP029191_3	3.1\|2101581\|32\|NZ_CP029191\|CRISPRCasFinder	2101581-2101612	32	MN693522	Marine virus AFVG_25M153, complete genome	21424-21455	10	0.688
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MT657343	Microbacterium phage GaeCeo, complete genome	29496-29525	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN310543	Microbacterium phage ChickenKing, complete genome	29263-29292	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KT373978	Mycobacterium phage Ukulele, complete genome	6369-6398	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MK016498	Mycobacterium phage Manda, complete genome	6884-6913	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH651174	Mycobacterium phage Easy2Say, complete genome	7344-7373	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH000607	Mycobacterium phage RiverMonster, complete genome	6366-6395	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH576953	Mycobacterium phage Hopey, complete genome	6366-6395	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KX834009	Mycobacterium phage Goldilocks, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	AY129331	Mycobacterium virus Cjw1, complete genome	7371-7400	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586043	Mycobacterium phage Buck, complete genome	7147-7176	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH371112	Mycobacterium phage Adnama, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KX611831	Mycobacterium phage Pharsalus, complete genome	7388-7417	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN428059	Mycobacterium phage Kanye, complete genome	7594-7623	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586041	Mycobacterium phage Elite2014, complete genome	5821-5850	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	EU816588	Mycobacterium phage Porky, complete genome	5926-5955	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MT952854	Mycobacterium phage Miniwave, complete genome	7388-7417	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH669002	Mycobacterium phage Emmina, complete genome	5926-5955	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586035	Mycobacterium phage ChosenOne, complete genome	5821-5850	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	DQ398041	Mycobacterium virus 244, complete genome	6369-6398	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586032	Mycobacterium phage Command613, complete genome	7459-7488	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KC661277	Mycobacterium phage Phrux, complete genome	6352-6381	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MG757160	Mycobacterium phage Kimchi, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH779503	Mycobacterium phage Gemini, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586019	Mycobacterium phage Stark, complete genome	6369-6398	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586050	Mycobacterium phage Lilpickle, complete genome	5821-5850	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MG872837	Mycobacterium phage Gage, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_008194	Mycobacterium phage 244, complete genome	6369-6398	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH727557	Mycobacterium phage Paperbeatsrock, complete genome	7588-7617	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	KF279417	Mycobacterium phage Quink, complete genome	6369-6398	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_028785	Mycobacterium phage NelitzaMV, complete genome	7259-7288	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586037	Mycobacterium phage GooberAzure, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MN586034	Mycobacterium phage Hoonter, complete genome	6601-6630	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	NC_004681	Mycobacterium phage Cjw1, complete genome	7371-7400	10	0.667
NZ_CP029191_14	14.2\|5472198\|30\|NZ_CP029191\|CRISPRCasFinder	5472198-5472227	30	MH513983	Mycobacterium phage ShereKhan, complete genome	7594-7623	10	0.667

1. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 0, identity: 1.0

cgggggcggcctgggcctggg	CRISPR spacer
cgggggcggcctgggcctggg	Protospacer
*********************

2. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 0, identity: 1.0

cgggggcggcctgggcctggg	CRISPR spacer
cgggggcggcctgggcctggg	Protospacer
*********************

3. spacer 14.1|5472153|21|NZ_CP029191|CRISPRCasFinder matches to NZ_CP025431 (Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence) position: , mismatch: 1, identity: 0.952

gcttggcagcatcgggcttgg	CRISPR spacer
gcttggccgcatcgggcttgg	Protospacer
******* *************

4. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to NZ_CP049912 (Diaphorobacter sp. HDW4A plasmid p_unnamed2, complete sequence) position: , mismatch: 1, identity: 0.952

cgggggcggcctgggcctggg	CRISPR spacer
cgcgggcggcctgggcctggg	Protospacer
** ******************

5. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to NZ_CP039991 (Pseudomonas aeruginosa strain T2101 plasmid pBT2101, complete sequence) position: , mismatch: 1, identity: 0.952

cgggggcggcctgggcctggg	CRISPR spacer
cggcggcggcctgggcctggg	Protospacer
*** *****************

6. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to NZ_CP010862 (Marinovum algicola DG 898 plasmid pMaD7) position: , mismatch: 1, identity: 0.952

cgggggcggcctgggcctggg	CRISPR spacer
cgggggcggcctgggcctcgg	Protospacer
****************** **

7. spacer 14.3|5472252|21|NZ_CP029191|CRISPRCasFinder matches to MK016490 (Arthrobacter phage Anjali, complete genome) position: , mismatch: 1, identity: 0.952

cgggggcggcctgggcctggg	CRISPR spacer
cgggggcggcctgggcatggg	Protospacer
**************** ****

8. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_013531 (Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01, complete sequence) position: , mismatch: 4, identity: 0.867

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gcacggcggccgcagggttcgcgggagcgg	Protospacer
* .**********.** *************

9. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 4, identity: 0.867

gagcggcggccgcgggcttcgcgg-gagcgg	CRISPR spacer
gagcggcggctgcgggctgcgcggtgagct-	Protospacer
**********.******* ***** ****

10. spacer 10.1|4254393|29|NZ_CP029191|CRISPRCasFinder matches to NZ_CP016820 (Rhodococcus sp. p52 plasmid pDF02, complete sequence) position: , mismatch: 5, identity: 0.828

ggagtccaccttccgtgcgggccgcatgt-	CRISPR spacer
agagtccaccgcccgtgcgggccg-atatt	Protospacer
.********* .************ **.*

11. spacer 10.1|4254393|29|NZ_CP029191|CRISPRCasFinder matches to NZ_CP016820 (Rhodococcus sp. p52 plasmid pDF02, complete sequence) position: , mismatch: 5, identity: 0.828

ggagtccaccttccgtgcgggccgcatgt-	CRISPR spacer
agagtccaccgcccgtgcgggccg-atatt	Protospacer
.********* .************ **.*

12. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 6, identity: 0.812

-ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
gctgc-ccctcctctgccggttcgctgtgcttt	Protospacer
 **** ***** ***** *********** .*

13. spacer 8.1|3725937|27|NZ_CP029191|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.778

caacccagcccacggcccggggggttt	CRISPR spacer
ccacccagcccacggccccggggccag	Protospacer
* **************** **** .

14. spacer 8.1|3725937|27|NZ_CP029191|CRISPRCasFinder matches to KX585251 (Mycobacterium phage Waterfoul, complete genome) position: , mismatch: 6, identity: 0.778

caacccagcccacggcccggggggttt	CRISPR spacer
ggacccagccgtcggcccggggggtga	Protospacer
 .********  *************

15. spacer 8.1|3725937|27|NZ_CP029191|CRISPRCasFinder matches to MH576966 (Mycobacterium phage Thyatira, complete genome) position: , mismatch: 6, identity: 0.778

caacccagcccacggcccggggggttt	CRISPR spacer
ggacccagccgtcggcccggggggtga	Protospacer
 .********  *************

16. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gcttcgcggccacgggcttcgcgggcgcgg	Protospacer
*  . ******.************* ****

17. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_LR134459 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 17, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccgccgcggccgcgggcttcgcggtgccgg	Protospacer
  ** ******************* . ***

18. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KT186228 (Streptomyces phage Amela, complete genome) position: , mismatch: 6, identity: 0.8

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
aggtgccggtcgcgggcttggcgggagcgg	Protospacer
..*.* ***.********* **********

19. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gatgcgtggtcgcgggcttcgccggagcgg	Protospacer
**   *.**.************ *******

20. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to MN234183 (Mycobacterium phage Antsirabe, complete genome) position: , mismatch: 7, identity: 0.781

ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
agctggcctcgtctgcggggtcgctgttgctg	Protospacer
   .* ************* ******* ****

21. spacer 13.1|5185450|33|NZ_CP029191|CRISPRCasFinder matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 7, identity: 0.788

ggaacgcc-ccaggggcgcggggaactgcgcgat	CRISPR spacer
-ctgcgcctccaggggcgcggtgaactgcgtgaa	Protospacer
   .**** ************ ********.**

22. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH067967 (Arthrobacter sp. strain ANT_H19B plasmid pA19BH1, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
agttgccggcggcgggcctcgcgggagcgg	Protospacer
.. .* **** ******.************

23. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_KP691638 (Bifidobacterium longum subsp. longum 72B plasmid p72B, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccgagtcggccgcgggcttcgagggaggcg	Protospacer
  * * *************** *****  *

24. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_KP691633 (Bifidobacterium longum subsp. longum 2-2B plasmid p2-2B, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccgagtcggccgcgggcttcgagggaggcg	Protospacer
  * * *************** *****  *

25. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_CP015236 (Rhodococcus fascians D188 plasmid pFiD188, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
acgggttggccgcggtcttcgcgggagctg	Protospacer
. * * .******** ************ *

26. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_CP022747 (Sphingobium hydrophobicum strain C1 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gcctggcggctgcgggcttcgcgagagggc	Protospacer
*  .******.************.*** *

27. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_006843 (Bifidobacterium longum plasmid pTB6, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccgagtcggccgcgggcttcgagggaggcg	Protospacer
  * * *************** *****  *

28. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to CP000385 (Mycobacterium sp. MCS Plasmid1, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cgccggcggccgcgggctgcgcggaggtgg	Protospacer
 . *************** *****..*.**

29. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_008704 (Mycobacterium sp. KMS plasmid pMKMS02, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cgccggcggccgcgggctgcgcggaggtgg	Protospacer
 . *************** *****..*.**

30. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 7, identity: 0.767

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cagcggcggccgcgggcttggtggcatggc	Protospacer
 ****************** *.** *  *

31. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to NZ_CP029776 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ctgcgccctcgtctgcgggttcgctg--tggctg	CRISPR spacer
gggcaccctcggctgcgggttcgctgcccagc--	Protospacer
  **.****** **************  ..**

32. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcgcggcggctgcgggcttggcggggcaga	Protospacer
  ********.******** *****.  *.

33. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gctcggcggcctcgggcttcgcggcgggca	Protospacer
*  ******** ************ .*  .

34. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MK291445 (Paracoccus phage vB_PyeM_Pyei1, complete genome) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gagcggcggcggcgggcttcggcagacgaa	Protospacer
********** **********  .**  ..

35. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cgccggcggccgcgcgcgtcgcgggaccat	Protospacer
 . *********** ** ******** *.

36. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
gagcgccggccgcgagcttcgcgacgtggt	Protospacer
***** ********.********. .  *

37. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MK524524 (Streptomyces phage Caelum, complete genome) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttcgagggcgcgggcttcgcgggagcag	Protospacer
   . * ** ******************.*

38. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_016652 (Rhodococcus phage REQ2, complete genome) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccgtagcggcggcggtcttcgcgggagcct	Protospacer
  *..***** **** ************

39. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_013936 (Mycobacterium phage Ardmore, complete genome) position: , mismatch: 8, identity: 0.733

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cagcggcggcagcggccttcgcggcgtcca	Protospacer
 ********* **** ******** . * .

40. spacer 15.5|5573978|35|NZ_CP029191|CRT matches to MN284901 (Microbacterium phage YuuY, complete genome) position: , mismatch: 8, identity: 0.771

gtccgtctcgtccgcggcctccttg-cggatgcgct	CRISPR spacer
gtccgtcccgtccccggcctccttgtcctccacgc-	Protospacer
*******.***** *********** *   ..***

41. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_014918 (Mesorhizobium ciceri biovar biserrulae WSM1271 plasmid pMESCI01, complete sequence) position: , mismatch: 9, identity: 0.7

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
aagcggcggcagccggcttcgcggcgtacc	Protospacer
.********* ** ********** .

42. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 9, identity: 0.7

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cgccggcggccgcgggcgtcgcggctgacc	Protospacer
 . ************** ******  *

43. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586057 (Gordonia phage Cleo, complete genome) position: , mismatch: 9, identity: 0.7

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
cctttgcggcggcgggctttgcgggagcct	Protospacer
   . ***** ********.********

44. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.7

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
aagcggcggcagccggcttcgcggcgtacc	Protospacer
.********* ** ********** .

45. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN033164 (Leviviridae sp. isolate H4_Bulk_Litter_23_scaffold_696 RNA-dependent RNA polymerase (H4BulkLitter23696_000001) and hypothetical protein (H4BulkLitter23696_000002) genes, complete cds; and hypothetical protein (H4BulkLitter23696_000003) gene, partial cds) position: , mismatch: 9, identity: 0.7

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
aagcggcggccgcgggctacgctcctacct	Protospacer
.***************** ***    .*

46. spacer 15.6|5574032|35|NZ_CP029191|CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 9, identity: 0.743

ggtcagcgcctgctcggcggccgaaagacgctcct	CRISPR spacer
gatccgcgcctgttcggcggccgaaagcgggcgcc	Protospacer
*.** *******.**************  * . *.

47. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to MN693051 (Marine virus AFVG_25M152, complete genome) position: , mismatch: 10, identity: 0.688

ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
tgacgcactcgactgcgggttcgctggctacg	Protospacer
. .*** **** **************    .*

48. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to MN693582 (Marine virus AFVG_25M154, complete genome) position: , mismatch: 10, identity: 0.688

ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
tgacgcactcgactgcgggttcgctggctacg	Protospacer
. .*** **** **************    .*

49. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to MN693500 (Marine virus AFVG_25M151, complete genome) position: , mismatch: 10, identity: 0.688

ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
tgacgcactcgactgcgggttcgctggctacg	Protospacer
. .*** **** **************    .*

50. spacer 3.1|2101581|32|NZ_CP029191|CRISPRCasFinder matches to MN693522 (Marine virus AFVG_25M153, complete genome) position: , mismatch: 10, identity: 0.688

ctgcgccctcgtctgcgggttcgctgtggctg	CRISPR spacer
tgacgcactcgactgcgggttcgctggctacg	Protospacer
. .*** **** **************    .*

51. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MT657343 (Microbacterium phage GaeCeo, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccttcttggcggcgggcttcgcgggagcct	Protospacer
   .  .*** *****************

52. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN310543 (Microbacterium phage ChickenKing, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
ccttcttggcggcgggcttcgcgggagcct	Protospacer
   .  .*** *****************

53. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KT373978 (Mycobacterium phage Ukulele, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

54. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MK016498 (Mycobacterium phage Manda, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

55. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH651174 (Mycobacterium phage Easy2Say, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

56. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH000607 (Mycobacterium phage RiverMonster, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

57. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH576953 (Mycobacterium phage Hopey, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

58. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KX834009 (Mycobacterium phage Goldilocks, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

59. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to AY129331 (Mycobacterium virus Cjw1, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

60. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586043 (Mycobacterium phage Buck, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

61. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH371112 (Mycobacterium phage Adnama, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

62. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KX611831 (Mycobacterium phage Pharsalus, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

63. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN428059 (Mycobacterium phage Kanye, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

64. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586041 (Mycobacterium phage Elite2014, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

65. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to EU816588 (Mycobacterium phage Porky, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

66. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MT952854 (Mycobacterium phage Miniwave, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

67. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH669002 (Mycobacterium phage Emmina, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

68. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586035 (Mycobacterium phage ChosenOne, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

69. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to DQ398041 (Mycobacterium virus 244, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

70. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586032 (Mycobacterium phage Command613, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

71. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KC661277 (Mycobacterium phage Phrux, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

72. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MG757160 (Mycobacterium phage Kimchi, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

73. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH779503 (Mycobacterium phage Gemini, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

74. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586019 (Mycobacterium phage Stark, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

75. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586050 (Mycobacterium phage Lilpickle, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

76. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MG872837 (Mycobacterium phage Gage, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

77. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_008194 (Mycobacterium phage 244, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

78. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH727557 (Mycobacterium phage Paperbeatsrock, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

79. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to KF279417 (Mycobacterium phage Quink, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

80. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_028785 (Mycobacterium phage NelitzaMV, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

81. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586037 (Mycobacterium phage GooberAzure, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

82. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MN586034 (Mycobacterium phage Hoonter, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

83. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to NC_004681 (Mycobacterium phage Cjw1, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

84. spacer 14.2|5472198|30|NZ_CP029191|CRISPRCasFinder matches to MH513983 (Mycobacterium phage ShereKhan, complete genome) position: , mismatch: 10, identity: 0.667

gagcggcggccgcgggcttcgcgggagcgg	CRISPR spacer
tcttctcggccgcgggcttggcgggaggct	Protospacer
   .  ************* *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7445976 : 7452164

Mycobacterium_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150188649.1\|7445976_7447491_+	DNA cytosine methyltransferase	G1BSJ2	Mycobacterium_virus	1.5e-111	46.5
WP_150187501.1\|7447643_7448342_+	hypothetical protein	Q5ULI6	Lactobacillus_virus	1.1e-19	36.5
WP_150187502.1\|7448331_7448760_+	hypothetical protein	G9FH14	Rhodococcus_phage	2.1e-34	53.0
WP_150187503.1\|7448847_7450860_+	hypothetical protein	A0A2P1JS77	Mycobacterium_phage	3.6e-23	32.5
WP_150187504.1\|7450793_7451288_+	HNH endonuclease	A0A2D1GEU4	Gordonia_phage	1.1e-13	49.5
WP_150187505.1\|7451592_7451907_+	hypothetical protein	NA	NA	NA	NA
WP_150187506.1\|7451903_7452164_+	hypothetical protein	A0A221SB55	Streptomyces_phage	3.0e-15	47.6

DBSCAN-SWA_2

7488921 : 7507163

Rhodococcus_phage(66.67%)

capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150187568.1\|7488921_7490502_+	hypothetical protein	G9FHH3	Rhodococcus_phage	3.3e-125	46.1
WP_150187569.1\|7490557_7491907_+\|portal	phage portal protein	G9FHH5	Rhodococcus_phage	4.9e-101	46.9
WP_150187570.1\|7491899_7493006_+	hypothetical protein	A0A1B1INB2	uncultured_Mediterranean_phage	3.7e-06	32.4
WP_150187571.1\|7493008_7494256_+\|capsid	phage major capsid protein	A0A2R4A2B5	Microbacterium_phage	2.1e-29	31.2
WP_150187572.1\|7494322_7494721_+	hypothetical protein	NA	NA	NA	NA
WP_150187573.1\|7494729_7494957_+	hypothetical protein	NA	NA	NA	NA
WP_150187574.1\|7494976_7495588_+	hypothetical protein	G9FHH7	Rhodococcus_phage	2.6e-33	43.0
WP_150187575.1\|7495589_7496030_+	hypothetical protein	NA	NA	NA	NA
WP_150187576.1\|7496040_7496379_+	hypothetical protein	G9FHH9	Rhodococcus_phage	1.3e-13	41.6
WP_150187577.1\|7496650_7497067_+	hypothetical protein	G9FHI1	Rhodococcus_phage	9.6e-48	69.1
WP_150187578.1\|7497066_7497558_+	hypothetical protein	G9FHI2	Rhodococcus_phage	5.3e-13	32.2
WP_150187579.1\|7497648_7497984_-	Lsr2 family protein	A0A0K1YA95	Streptomyces_phage	8.9e-12	38.5
WP_150187580.1\|7498051_7498447_+	hypothetical protein	G9FHI3	Rhodococcus_phage	6.3e-33	56.5
WP_150187581.1\|7498461_7498755_+	hypothetical protein	NA	NA	NA	NA
WP_150187582.1\|7498761_7503204_+	hypothetical protein	A0A2L1IWI7	Gordonia_phage	5.1e-22	26.8
WP_150187583.1\|7503251_7507163_+	hypothetical protein	G9FHI6	Rhodococcus_phage	0.0e+00	48.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP029191

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection