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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029193 Streptomyces venezuelae strain ATCC 14583 chromosome, complete genome 8 crisprs casR,DEDDh,WYL,cas4,cas3,csa3,DinG 3 2 2 0

Results visualization

1. NZ_CP029193
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_1 708499-708587 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_2 2252937-2253028 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_3 3106661-3106750 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_4 3119288-3119377 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_5 3881732-3881857 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_6 5025112-5025200 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_7 5253283-5253404 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029193_8 6059273-6059367 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP029193_1 1.1|708528|31|NZ_CP029193|CRISPRCasFinder 708528-708558 31 NZ_CP029193.1 708573-708603 0 1.0
NZ_CP029193_3 3.1|3106686|40|NZ_CP029193|CRISPRCasFinder 3106686-3106725 40 NZ_CP029193.1 2727279-2727318 0 1.0
NZ_CP029193_4 4.1|3119313|40|NZ_CP029193|CRISPRCasFinder 3119313-3119352 40 NZ_CP029193.1 2727279-2727318 0 1.0

1. spacer 1.1|708528|31|NZ_CP029193|CRISPRCasFinder matches to position: 708573-708603, mismatch: 0, identity: 1.0

ggggcgctcccgcactggccgttcccacagg	CRISPR spacer
ggggcgctcccgcactggccgttcccacagg	Protospacer
*******************************

2. spacer 3.1|3106686|40|NZ_CP029193|CRISPRCasFinder matches to position: 2727279-2727318, mismatch: 0, identity: 1.0

cccgtcccaacgcaagccgccctcacggttcgggtcgggt	CRISPR spacer
cccgtcccaacgcaagccgccctcacggttcgggtcgggt	Protospacer
****************************************

3. spacer 4.1|3119313|40|NZ_CP029193|CRISPRCasFinder matches to position: 2727279-2727318, mismatch: 0, identity: 1.0

acccgacccgaaccgtgagggcggcttgcgttgggacggg	CRISPR spacer
acccgacccgaaccgtgagggcggcttgcgttgggacggg	Protospacer
****************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 MN807247 Mycobacterium phage Chupacabra, complete genome 19649-19678 6 0.8
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 MF773750 Mycobacterium phage OKCentral2016, complete genome 19356-19385 6 0.8
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 JX307704 Mycobacterium virus Goose, complete genome 19650-19679 6 0.8
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 448312-448341 6 0.8
NZ_CP029193_7 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder 5253306-5253336 31 NZ_CP034821 Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence 98054-98084 7 0.774
NZ_CP029193_7 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder 5253306-5253336 31 NZ_CP036181 Escherichia coli strain WCHEC025970 plasmid p2_025970, complete sequence 71712-71742 7 0.774
NZ_CP029193_7 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder 5253306-5253336 31 NZ_MG825377 Escherichia coli strain 1108 plasmid p1108-emrB, complete sequence 70529-70559 7 0.774
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1234421-1234450 8 0.733
NZ_CP029193_5 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder 3881756-3881785 30 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 897954-897983 8 0.733
NZ_CP029193_7 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder 5253306-5253336 31 NC_010510 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence 257780-257810 8 0.742
NZ_CP029193_7 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder 5253306-5253336 31 NZ_AP022333 Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence 294962-294992 8 0.742

1. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to MN807247 (Mycobacterium phage Chupacabra, complete genome) position: , mismatch: 6, identity: 0.8

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
acggtgtgcggttccggcacccggtcccgc	Protospacer
 *   **************** ***** **

2. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 6, identity: 0.8

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
acggtgtgcggttccggcacccggtcccgc	Protospacer
 *   **************** ***** **

3. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 6, identity: 0.8

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
acggtgtgcggttccggcacccggtcccgc	Protospacer
 *   **************** ***** **

4. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
tgctggagcggttccggcaccagggtgcgc	Protospacer
* **** ***************** .  **

5. spacer 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 7, identity: 0.774

ctgcgggccgggagcgccctgcggt-cctgcg	CRISPR spacer
tgtggggccggcagcggcctgcggtccctgc-	Protospacer
.   ******* **** ******** ***** 

6. spacer 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder matches to NZ_CP036181 (Escherichia coli strain WCHEC025970 plasmid p2_025970, complete sequence) position: , mismatch: 7, identity: 0.774

ctgcgggccgggagcgccctgcggt-cctgcg	CRISPR spacer
tgtggggccggcagcggcctgcggtccctgc-	Protospacer
.   ******* **** ******** ***** 

7. spacer 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder matches to NZ_MG825377 (Escherichia coli strain 1108 plasmid p1108-emrB, complete sequence) position: , mismatch: 7, identity: 0.774

ctgcgggccgggagcgccctgcggt-cctgcg	CRISPR spacer
tgtggggccggcagcggcctgcggtccctgc-	Protospacer
.   ******* **** ******** ***** 

8. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
cggtaaggcggttccggcgccagatccagc	Protospacer
.  *.. ***********.****.******

9. spacer 5.1|3881756|30|NZ_CP029193|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.733

tcctggtgcggttccggcaccaggtccagc	CRISPR spacer
cggtaaggcggttccggcgccagatccagc	Protospacer
.  *.. ***********.****.******

10. spacer 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.742

ctgcgggccgggagcgccctgcggtcctgcg	CRISPR spacer
gagccgcccgggagcgccctgcggtcgcggt	Protospacer
  ** * ******************* .*  

11. spacer 7.1|5253306|31|NZ_CP029193|CRISPRCasFinder matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 8, identity: 0.742

ctgcgggccgggagcgccctgcggtcctgcg	CRISPR spacer
tctggtgccggcagcgccctgcggtccagct	Protospacer
..  * ***** *************** ** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1065932 : 1078979 20 Mycobacterium_phage(30.0%) NA NA
DBSCAN-SWA_2 5240919 : 5302061 71 Streptomyces_phage(90.91%) portal,integrase,tail,head attL 5244117:5244133|attR 5305376:5305392
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage