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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP029194 Streptomyces venezuelae strain ATCC 15068 chromosome, complete genome 8 crisprs csa3,WYL,DEDDh,DinG,cas3,Cas14u_CAS-V,cas4 4 9 3 0

Results visualization

1. NZ_CP029194
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_1 1249011-1249099 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_2 3748354-3748446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_3 3751053-3751231 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_5 5313762-5313856 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_4 5313600-5313695 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_6 5513372-5513898 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_7 6726837-6726952 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP029194_8 6755577-6756238 Orphan NA
14 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP029194_6 6.6|5513791|19|NZ_CP029194|CRT 5513791-5513809 19 NZ_CP029194.1 935820-935838 2 0.895
NZ_CP029194_6 6.6|5513791|19|NZ_CP029194|CRT 5513791-5513809 19 NZ_CP029194.1 1711430-1711448 2 0.895
NZ_CP029194_6 6.6|5513791|19|NZ_CP029194|CRT 5513791-5513809 19 NZ_CP029194.1 1967127-1967145 2 0.895
NZ_CP029194_8 8.3|6755696|19|NZ_CP029194|CRT 6755696-6755714 19 NZ_CP029194.1 6758750-6758768 2 0.895
NZ_CP029194_8 8.6|6755834|19|NZ_CP029194|CRT 6755834-6755852 19 NZ_CP029194.1 1096974-1096992 2 0.895
NZ_CP029194_8 8.6|6755834|19|NZ_CP029194|CRT 6755834-6755852 19 NZ_CP029194.1 8255597-8255615 2 0.895
NZ_CP029194_8 8.9|6755972|19|NZ_CP029194|CRT 6755972-6755990 19 NZ_CP029194.1 1096974-1096992 2 0.895
NZ_CP029194_8 8.9|6755972|19|NZ_CP029194|CRT 6755972-6755990 19 NZ_CP029194.1 8255597-8255615 2 0.895

1. spacer 6.6|5513791|19|NZ_CP029194|CRT matches to position: 935820-935838, mismatch: 2, identity: 0.895

cgtgccacggcctcgcccc	CRISPR spacer
cgtgccacggccccgctcc	Protospacer
************.***.**

2. spacer 6.6|5513791|19|NZ_CP029194|CRT matches to position: 1711430-1711448, mismatch: 2, identity: 0.895

cgtgccacggcctcgcccc	CRISPR spacer
cgtccctcggcctcgcccc	Protospacer
*** ** ************

3. spacer 6.6|5513791|19|NZ_CP029194|CRT matches to position: 1967127-1967145, mismatch: 2, identity: 0.895

cgtgccacggcctcgcccc	CRISPR spacer
cgcgcctcggcctcgcccc	Protospacer
**.*** ************

4. spacer 8.3|6755696|19|NZ_CP029194|CRT matches to position: 6758750-6758768, mismatch: 2, identity: 0.895

ttccggtggcgggttccgg	CRISPR spacer
ttgcggtggcgggtgccgg	Protospacer
** *********** ****

5. spacer 8.6|6755834|19|NZ_CP029194|CRT matches to position: 1096974-1096992, mismatch: 2, identity: 0.895

ctccggtggtggcttccgg	CRISPR spacer
ctccggtgctgccttccgg	Protospacer
******** ** *******

6. spacer 8.6|6755834|19|NZ_CP029194|CRT matches to position: 8255597-8255615, mismatch: 2, identity: 0.895

ctccggtggtggcttccgg	CRISPR spacer
ctccggtggtggcctcggg	Protospacer
*************.** **

7. spacer 8.9|6755972|19|NZ_CP029194|CRT matches to position: 1096974-1096992, mismatch: 2, identity: 0.895

ctccggtggtggcttccgg	CRISPR spacer
ctccggtgctgccttccgg	Protospacer
******** ** *******

8. spacer 8.9|6755972|19|NZ_CP029194|CRT matches to position: 8255597-8255615, mismatch: 2, identity: 0.895

ctccggtggtggcttccgg	CRISPR spacer
ctccggtggtggcctcggg	Protospacer
*************.** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP029194_8 8.14|6756194|22|NZ_CP029194|CRT 6756194-6756215 22 NZ_CP042265 Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence 251677-251698 2 0.909
NZ_CP029194_8 8.7|6755876|31|NZ_CP029194|CRT 6755876-6755906 31 NC_022995 Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence 21240-21270 4 0.871
NZ_CP029194_8 8.13|6756140|31|NZ_CP029194|CRT 6756140-6756170 31 NC_022995 Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence 21240-21270 4 0.871
NZ_CP029194_8 8.4|6755738|31|NZ_CP029194|CRT 6755738-6755768 31 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 670908-670938 5 0.839
NZ_CP029194_2 2.1|3748387|27|NZ_CP029194|CRISPRCasFinder 3748387-3748413 27 NC_019737 Crinalium epipsammum PCC 9333 plasmid pCRI9333.07, complete sequence 20356-20382 6 0.778
NZ_CP029194_6 6.7|5513839|31|NZ_CP029194|CRT 5513839-5513869 31 NZ_CP039694 Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence 338136-338166 6 0.806
NZ_CP029194_8 8.1|6755600|31|NZ_CP029194|CRT 6755600-6755630 31 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 670908-670938 6 0.806
NZ_CP029194_8 8.7|6755876|31|NZ_CP029194|CRT 6755876-6755906 31 NZ_CP018075 Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence 133637-133667 6 0.806
NZ_CP029194_8 8.13|6756140|31|NZ_CP029194|CRT 6756140-6756170 31 NZ_CP018075 Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence 133637-133667 6 0.806
NZ_CP029194_6 6.5|5513731|31|NZ_CP029194|CRT 5513731-5513761 31 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 942180-942210 7 0.774
NZ_CP029194_8 8.1|6755600|31|NZ_CP029194|CRT 6755600-6755630 31 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 1894072-1894102 7 0.774
NZ_CP029194_8 8.4|6755738|31|NZ_CP029194|CRT 6755738-6755768 31 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 1894072-1894102 7 0.774
NZ_CP029194_8 8.7|6755876|31|NZ_CP029194|CRT 6755876-6755906 31 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 359493-359523 7 0.774
NZ_CP029194_8 8.13|6756140|31|NZ_CP029194|CRT 6756140-6756170 31 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 359493-359523 7 0.774
NZ_CP029194_6 6.5|5513731|31|NZ_CP029194|CRT 5513731-5513761 31 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 1508407-1508437 8 0.742
NZ_CP029194_6 6.5|5513731|31|NZ_CP029194|CRT 5513731-5513761 31 NZ_CP034999 Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence 397226-397256 8 0.742
NZ_CP029194_8 8.7|6755876|31|NZ_CP029194|CRT 6755876-6755906 31 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 124487-124517 9 0.71
NZ_CP029194_8 8.13|6756140|31|NZ_CP029194|CRT 6756140-6756170 31 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 124487-124517 9 0.71
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 783370-783406 10 0.73
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NZ_CP032342 Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence 581250-581286 11 0.703
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NZ_CP033321 Azospirillum brasilense strain Cd plasmid p3, complete sequence 183595-183631 11 0.703
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NZ_CP033323 Azospirillum brasilense strain Cd plasmid p5, complete sequence 169041-169077 11 0.703
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NZ_CP033317 Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence 175556-175592 11 0.703
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 CU468217 Azospirillum brasilense bacteriophage Cd, complete genome 7674-7710 11 0.703
NZ_CP029194_6 6.3|5513581|37|NZ_CP029194|CRT 5513581-5513617 37 NC_010355 Azospirillum phage Cd, complete genome 7674-7710 11 0.703

1. spacer 8.14|6756194|22|NZ_CP029194|CRT matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 2, identity: 0.909

ttccggtggcgggttccgccgt	CRISPR spacer
ttccggtggcgggttccgacgg	Protospacer
****************** ** 

2. spacer 8.7|6755876|31|NZ_CP029194|CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 4, identity: 0.871

taccggtg--gtggcttccggcgcgacgaccgt	CRISPR spacer
--ccggtggcgtggctttcggcgcgacgatcgt	Protospacer
  ******  *******.***********.***

3. spacer 8.13|6756140|31|NZ_CP029194|CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 4, identity: 0.871

taccggtg--gtggcttccggcgcgacgaccgt	CRISPR spacer
--ccggtggcgtggctttcggcgcgacgatcgt	Protospacer
  ******  *******.***********.***

4. spacer 8.4|6755738|31|NZ_CP029194|CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.839

ctccggtggtggcttccgtcgtgatgaccgt--	CRISPR spacer
cgccggtcgtggcttccgccgtgat--ccgtga	Protospacer
* ***** **********.******  ****  

5. spacer 2.1|3748387|27|NZ_CP029194|CRISPRCasFinder matches to NC_019737 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.07, complete sequence) position: , mismatch: 6, identity: 0.778

agttgccctctcctggtccaagtcctc	CRISPR spacer
tagcgccctctcctgttccaagtcatc	Protospacer
 . .*********** ******** **

6. spacer 6.7|5513839|31|NZ_CP029194|CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 6, identity: 0.806

tcgcccccggaccgtgccacggcctcgcccc	CRISPR spacer
ttgatcccggaccttgccacggcctcgccga	Protospacer
*.* .******** ***************  

7. spacer 8.1|6755600|31|NZ_CP029194|CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.806

ttccggtggtggcttccgtcgtgatgaccgt--	CRISPR spacer
cgccggtcgtggcttccgccgtgat--ccgtga	Protospacer
. ***** **********.******  ****  

8. spacer 8.7|6755876|31|NZ_CP029194|CRT matches to NZ_CP018075 (Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence) position: , mismatch: 6, identity: 0.806

taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
gtccggcggtggcttccgccgcgacgaccac	Protospacer
  ****.*********** **********..

9. spacer 8.13|6756140|31|NZ_CP029194|CRT matches to NZ_CP018075 (Streptomyces venezuelae strain NRRL B-65442 plasmid, complete sequence) position: , mismatch: 6, identity: 0.806

taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
gtccggcggtggcttccgccgcgacgaccac	Protospacer
  ****.*********** **********..

10. spacer 6.5|5513731|31|NZ_CP029194|CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

gggcgcacgtctacgtcaacggccggggccc	CRISPR spacer
cggcgcgcgtctacgtgaacggccgcaacct	Protospacer
 *****.********* ******** ..**.

11. spacer 8.1|6755600|31|NZ_CP029194|CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.774

ttccggtggtggcttccgtcgtgatgaccgt	CRISPR spacer
atctggtgatggcttccgtcgtgatcgtcgg	Protospacer
 **.****.**************** ..** 

12. spacer 8.4|6755738|31|NZ_CP029194|CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 7, identity: 0.774

ctccggtggtggcttccgtcgtgatgaccgt	CRISPR spacer
atctggtgatggcttccgtcgtgatcgtcgg	Protospacer
 **.****.**************** ..** 

13. spacer 8.7|6755876|31|NZ_CP029194|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.774

-taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
gcggcgg-ggtggcttcccgcgcgacgagcgg	Protospacer
 .. *** ********** ********* ** 

14. spacer 8.13|6756140|31|NZ_CP029194|CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.774

-taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
gcggcgg-ggtggcttcccgcgcgacgagcgg	Protospacer
 .. *** ********** ********* ** 

15. spacer 6.5|5513731|31|NZ_CP029194|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.742

gggcgcacgtctacgtcaacggccggggccc	CRISPR spacer
cggcgcacgcctacgtcaacgacctgatcaa	Protospacer
 ********.***********.** *. *  

16. spacer 6.5|5513731|31|NZ_CP029194|CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 8, identity: 0.742

gggcgcacgtctacgtcaacggccggggccc	CRISPR spacer
gcgggcacgtgcacgtcaacggccgggaagt	Protospacer
* * ****** .***************.  .

17. spacer 8.7|6755876|31|NZ_CP029194|CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
cgaaggtggtgtcttcctgcgcgacgatggc	Protospacer
..  ******* ***** *********. *.

18. spacer 8.13|6756140|31|NZ_CP029194|CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

taccggtggtggcttccggcgcgacgaccgt	CRISPR spacer
cgaaggtggtgtcttcctgcgcgacgatggc	Protospacer
..  ******* ***** *********. *.

19. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.73

---gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tgggtgg---cggccatgcccaaggcctgggcggcgttgc	Protospacer
   ***.   ******.***** *************.. .

20. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

21. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

22. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

23. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NZ_CP033317 (Azospirillum brasilense strain Sp 7 plasmid p5, complete sequence) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

24. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to CU468217 (Azospirillum brasilense bacteriophage Cd, complete genome) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

25. spacer 6.3|5513581|37|NZ_CP029194|CRT matches to NC_010355 (Azospirillum phage Cd, complete genome) position: , mismatch: 11, identity: 0.703

gtgagcccggccacgcccacggcctgggcggcgccct	CRISPR spacer
tttcatgccgccacccccacgggctgggcggcgccga	Protospacer
 *  .. * ***** ******* ************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 413903 : 449375 32 Bacillus_phage(40.0%) tail,holin,plate NA
DBSCAN-SWA_2 3540813 : 3559371 14 Streptomyces_phage(72.73%) tail NA
DBSCAN-SWA_3 8491449 : 8549811 48 Faustovirus(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage